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| author | Allen Byrne <byrn@hdfgroup.org> | 2018-06-20 21:06:18 (GMT) |
|---|---|---|
| committer | Allen Byrne <byrn@hdfgroup.org> | 2018-06-20 21:06:18 (GMT) |
| commit | 651b728a62bf2cda702270a9ccb78233051da638 (patch) | |
| tree | 53e2975c9748e12603cbe6074e56ee625fecd350 /java/src | |
| parent | 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053 (diff) | |
| download | hdf5-651b728a62bf2cda702270a9ccb78233051da638.zip hdf5-651b728a62bf2cda702270a9ccb78233051da638.tar.gz hdf5-651b728a62bf2cda702270a9ccb78233051da638.tar.bz2 | |
HDFVIEW compound vlen needed vlen_t size
Diffstat (limited to 'java/src')
| -rw-r--r-- | java/src/hdf/hdf5lib/HDF5Constants.java | 3 | ||||
| -rw-r--r-- | java/src/jni/h5Constants.c | 2 | ||||
| -rw-r--r-- | java/src/jni/h5dImp.c | 30 |
3 files changed, 29 insertions, 6 deletions
diff --git a/java/src/hdf/hdf5lib/HDF5Constants.java b/java/src/hdf/hdf5lib/HDF5Constants.java index 43109f2..7eddac0 100644 --- a/java/src/hdf/hdf5lib/HDF5Constants.java +++ b/java/src/hdf/hdf5lib/HDF5Constants.java @@ -623,6 +623,7 @@ public class HDF5Constants { public static final long H5T_UNIX_D64LE = H5T_UNIX_D64LE(); public static final long H5T_VARIABLE = H5T_VARIABLE(); public static final int H5T_VLEN = H5T_VLEN(); + public static final int H5T_VL_T = H5T_VL_T(); public static final int H5Z_CB_CONT = H5Z_CB_CONT(); public static final int H5Z_CB_ERROR = H5Z_CB_ERROR(); public static final int H5Z_CB_FAIL = H5Z_CB_FAIL(); @@ -1825,6 +1826,8 @@ public class HDF5Constants { private static native final int H5T_VLEN(); + private static native final int H5T_VL_T(); + private static native final int H5Z_CB_CONT(); private static native final int H5Z_CB_ERROR(); diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c index 0f4361f..c99745d 100644 --- a/java/src/jni/h5Constants.c +++ b/java/src/jni/h5Constants.c @@ -1231,6 +1231,8 @@ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5T_1VARIABLE(JNIEnv *env, jclass cls) { return (int)H5T_VARIABLE; } JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5T_1VLEN(JNIEnv *env, jclass cls) { return H5T_VLEN; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5T_1VL_1T(JNIEnv *env, jclass cls) { return sizeof(hvl_t); } JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5Z_1CB_1CONT(JNIEnv *env, jclass cls) { return H5Z_CB_CONT; } diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c index 9784055..19013db 100644 --- a/java/src/jni/h5dImp.c +++ b/java/src/jni/h5dImp.c @@ -1002,20 +1002,38 @@ Java_hdf_hdf5lib_H5_H5DreadVL jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) { herr_t status = -1; - htri_t isVlenStr=0; + htri_t isStr = 0; + htri_t isVlenStr = 0; + htri_t isComplex = 0; if (buf == NULL) { h5nullArgument(env, "H5DreadVL: buf is NULL"); } /* end if */ else { - isVlenStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING); - - if (isVlenStr) - h5badArgument(env, "H5DreadVL: type is not variable length non-string"); - else + isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING); + if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) { + unsigned i; + int nm = H5Tget_nmembers(mem_type_id); + for(i = 0; i <nm; i++) { + hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i); + isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) || + H5Tdetect_class((hid_t)nested_tid, H5T_VLEN); + H5Tclose(nested_tid); + } + } + else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) { + isVlenStr = 1; /* strings created by H5Tvlen_create( H5T_C_S1) */ + } + if (isStr == 0 || isComplex>0 || isVlenStr) { status = H5DreadVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf); + } + else if (isStr > 0) { + status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, + (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, buf); + } } /* end else */ return (jint)status; |