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author | Allen Byrne <50328838+byrnHDF@users.noreply.github.com> | 2022-04-22 15:24:27 (GMT) |
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committer | GitHub <noreply@github.com> | 2022-04-22 15:24:27 (GMT) |
commit | 974aefb8416d78b0687a54e5f72f21d0ca72ae2d (patch) | |
tree | 0fe4e4327b95c38f362ceace220d59cb08aa88a3 /java/test/TestH5D.java | |
parent | f5042fd4d3549e9e3453ab99d81bb46f1688b240 (diff) | |
download | hdf5-974aefb8416d78b0687a54e5f72f21d0ca72ae2d.zip hdf5-974aefb8416d78b0687a54e5f72f21d0ca72ae2d.tar.gz hdf5-974aefb8416d78b0687a54e5f72f21d0ca72ae2d.tar.bz2 |
Add java clang-format (#1672)
Diffstat (limited to 'java/test/TestH5D.java')
-rw-r--r-- | java/test/TestH5D.java | 555 |
1 files changed, 315 insertions, 240 deletions
diff --git a/java/test/TestH5D.java b/java/test/TestH5D.java index dac3a9c..4bab1a9 100644 --- a/java/test/TestH5D.java +++ b/java/test/TestH5D.java @@ -33,46 +33,50 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5D { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "testD.h5"; - private static final int DIM_X = 4; - private static final int DIM_Y = 6; - private static final int RANK = 2; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5faplid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5dtid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - long H5did0 = HDF5Constants.H5I_INVALID_HID; - long H5dcpl_id = HDF5Constants.H5I_INVALID_HID; - long[] H5dims = { DIM_X, DIM_Y }; + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + private static final int RANK = 2; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5faplid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5dtid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + long H5did0 = HDF5Constants.H5I_INVALID_HID; + long H5dcpl_id = HDF5Constants.H5I_INVALID_HID; + long[] H5dims = {DIM_X, DIM_Y}; // Values for the status of space allocation enum H5D_space_status { - H5D_SPACE_STATUS_ERROR(-1), H5D_SPACE_STATUS_NOT_ALLOCATED(0), H5D_SPACE_STATUS_PART_ALLOCATED( - 1), H5D_SPACE_STATUS_ALLOCATED(2); + H5D_SPACE_STATUS_ERROR(-1), + H5D_SPACE_STATUS_NOT_ALLOCATED(0), + H5D_SPACE_STATUS_PART_ALLOCATED(1), + H5D_SPACE_STATUS_ALLOCATED(2); private int code; - H5D_space_status(int space_status) { - this.code = space_status; - } + H5D_space_status(int space_status) { this.code = space_status; } - public int getCode() { - return this.code; - } + public int getCode() { return this.code; } } - private final void _deleteFile(String filename) { + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} - catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } - private final void _createPDataset(long fid, long dsid, String name, long dcpl_val) { + private final void _createPDataset(long fid, long dsid, String name, long dcpl_val) + { try { H5dcpl_id = H5.H5Pcreate(dcpl_val); @@ -94,9 +98,8 @@ public class TestH5D { } try { - H5did0 = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, H5dcpl_id, HDF5Constants.H5P_DEFAULT); + H5did0 = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + H5dcpl_id, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -105,7 +108,8 @@ public class TestH5D { assertTrue("TestH5D._createPDataset.H5Dcreate: ", H5did0 >= 0); } - private final void _createChunkDataset(long fid, long dsid, String name, long dapl) { + private final void _createChunkDataset(long fid, long dsid, String name, long dapl) + { try { H5dcpl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE); @@ -127,9 +131,8 @@ public class TestH5D { } try { - H5did = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, H5dcpl_id, dapl); + H5did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + H5dcpl_id, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -138,11 +141,11 @@ public class TestH5D { assertTrue("TestH5D._createChunkDataset.H5Dcreate: ", H5did >= 0); } - private final void _createDataset(long fid, long dsid, String name, long dapl) { + private final void _createDataset(long fid, long dsid, String name, long dapl) + { try { - H5did = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + H5did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -151,7 +154,8 @@ public class TestH5D { assertTrue("TestH5D._createDataset.H5Dcreate: ", H5did >= 0); } - private final void _createVLDataset(long fid, long dsid, String name, long dapl) { + private final void _createVLDataset(long fid, long dsid, String name, long dapl) + { try { H5dtid = H5.H5Tcopy(HDF5Constants.H5T_C_S1); } @@ -169,8 +173,8 @@ public class TestH5D { fail("H5.H5Tset_size: " + err); } try { - H5did = H5.H5Dcreate(fid, name, H5dtid, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + H5did = H5.H5Dcreate(fid, name, H5dtid, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -179,99 +183,153 @@ public class TestH5D { assertTrue("TestH5D._createVLDataset.H5Dcreate: ", H5did >= 0); } - private final void _closeH5file() throws HDF5LibraryException { + private final void _closeH5file() throws HDF5LibraryException + { if (H5dcpl_id >= 0) - try {H5.H5Pclose(H5dcpl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(H5dcpl_id); + } + catch (Exception ex) { + } if (H5did0 >= 0) - try {H5.H5Dclose(H5did0);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did0); + } + catch (Exception ex) { + } if (H5did >= 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5dtid > 0) - try {H5.H5Tclose(H5dtid);} catch (Exception ex) {} + try { + H5.H5Tclose(H5dtid); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } - private final void _openH5file(String filename, String dsetname, long dapl) { - try { - H5fid = H5.H5Fopen(filename, - HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5D._openH5file: " + err); - } - assertTrue("TestH5D._openH5file: H5.H5Fopen: ",H5fid >= 0); - try { - H5did = H5.H5Dopen(H5fid, dsetname, dapl); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5D._openH5file: " + err); - } - assertTrue("TestH5D._openH5file: H5.H5Dopen: ",H5did >= 0); - try { - H5dsid = H5.H5Dget_space(H5did); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5D._openH5file: " + err); - } - assertTrue("TestH5D._openH5file: H5.H5Screate_simple: ",H5dsid > 0); + private final void _openH5file(String filename, String dsetname, long dapl) + { + try { + H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5D._openH5file: " + err); + } + assertTrue("TestH5D._openH5file: H5.H5Fopen: ", H5fid >= 0); + try { + H5did = H5.H5Dopen(H5fid, dsetname, dapl); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5D._openH5file: " + err); + } + assertTrue("TestH5D._openH5file: H5.H5Dopen: ", H5did >= 0); + try { + H5dsid = H5.H5Dget_space(H5did); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5D._openH5file: " + err); + } + assertTrue("TestH5D._openH5file: H5.H5Screate_simple: ", H5dsid > 0); } @Before - public void createH5file() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); - System.out.print(testname.getMethodName()); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); + System.out.print(testname.getMethodName()); try { H5faplid = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS); - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, H5faplid); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, H5faplid); H5dsid = H5.H5Screate_simple(RANK, H5dims, null); } catch (Throwable err) { err.printStackTrace(); fail("TestH5D.createH5file: " + err); } - assertTrue("TestH5D.createH5file: H5.H5Fcreate: ",H5fid >= 0); - assertTrue("TestH5D.createH5file: H5.H5Screate_simple: ",H5dsid >= 0); + assertTrue("TestH5D.createH5file: H5.H5Fcreate: ", H5fid >= 0); + assertTrue("TestH5D.createH5file: H5.H5Screate_simple: ", H5dsid >= 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5dcpl_id >= 0) - try {H5.H5Pclose(H5dcpl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(H5dcpl_id); + } + catch (Exception ex) { + } if (H5did0 >= 0) - try {H5.H5Dclose(H5did0);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did0); + } + catch (Exception ex) { + } if (H5did >= 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5dtid > 0) - try {H5.H5Tclose(H5dtid);} catch (Exception ex) {} + try { + H5.H5Tclose(H5dtid); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5faplid >= 0) - try {H5.H5Pclose(H5faplid);} catch (Exception ex) {} + try { + H5.H5Pclose(H5faplid); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } _deleteFile(H5_FILE); System.out.println(); } @Test - public void testH5Dcreate() { + public void testH5Dcreate() + { long dataset_id = HDF5Constants.H5I_INVALID_HID; try { - dataset_id = H5.H5Dcreate(H5fid, "dset", - HDF5Constants.H5T_STD_I32BE, H5dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + dataset_id = + H5.H5Dcreate(H5fid, "dset", HDF5Constants.H5T_STD_I32BE, H5dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Exception err) { err.printStackTrace(); @@ -290,11 +348,12 @@ public class TestH5D { } @Test - public void testH5Dcreate_anon() { + public void testH5Dcreate_anon() + { long dataset_id = HDF5Constants.H5I_INVALID_HID; try { - dataset_id = H5.H5Dcreate_anon(H5fid, HDF5Constants.H5T_STD_I32BE, - H5dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + dataset_id = H5.H5Dcreate_anon(H5fid, HDF5Constants.H5T_STD_I32BE, H5dsid, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Exception err) { err.printStackTrace(); @@ -313,13 +372,14 @@ public class TestH5D { } @Test - public void testH5Dopen() { + public void testH5Dopen() + { long dataset_id = HDF5Constants.H5I_INVALID_HID; _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); try { H5.H5Dclose(H5did); - H5did = HDF5Constants.H5I_INVALID_HID; + H5did = HDF5Constants.H5I_INVALID_HID; dataset_id = H5.H5Dopen(H5fid, "dset", HDF5Constants.H5P_DEFAULT); } catch (Exception err) { @@ -339,7 +399,8 @@ public class TestH5D { } @Test - public void testH5Dget_storage_size_empty() { + public void testH5Dget_storage_size_empty() + { long storage_size = 0; _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); @@ -354,10 +415,11 @@ public class TestH5D { } @Test - public void testH5Dget_storage_size() { + public void testH5Dget_storage_size() + { long storage_size = 0; int[][] dset_data = new int[DIM_X][DIM_Y]; - int FILLVAL = 99; + int FILLVAL = 99; _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); // Initialize the dataset. @@ -367,9 +429,8 @@ public class TestH5D { try { if (H5did >= 0) - H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data[0]); + H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, dset_data[0]); } catch (Exception e) { e.printStackTrace(); @@ -382,21 +443,22 @@ public class TestH5D { err.printStackTrace(); fail("testH5Dget_storage_size: " + err); } - assertTrue("testH5Dget_storage_size: "+storage_size, storage_size == DIM_X*DIM_Y*4); + assertTrue("testH5Dget_storage_size: " + storage_size, storage_size == DIM_X * DIM_Y * 4); } @Test - public void testH5Dget_access_plist() { - long dapl_id = HDF5Constants.H5I_INVALID_HID; - long test_dapl_id = HDF5Constants.H5I_INVALID_HID; - int[] mdc_nelmts1 = {0}; - int[] mdc_nelmts2 = {0}; + public void testH5Dget_access_plist() + { + long dapl_id = HDF5Constants.H5I_INVALID_HID; + long test_dapl_id = HDF5Constants.H5I_INVALID_HID; + int[] mdc_nelmts1 = {0}; + int[] mdc_nelmts2 = {0}; long[] rdcc_nelmts1 = {0}; long[] rdcc_nelmts2 = {0}; long[] rdcc_nbytes1 = {0}; long[] rdcc_nbytes2 = {0}; - double[] rdcc_w01 = {0}; - double[] rdcc_w02 = {0}; + double[] rdcc_w01 = {0}; + double[] rdcc_w02 = {0}; try { test_dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); @@ -442,14 +504,15 @@ public class TestH5D { catch (Exception err) { err.printStackTrace(); } - assertTrue("testH5Dget_access_plist: ", rdcc_nelmts2==rdcc_nelmts2 && rdcc_nbytes2==rdcc_nbytes2); + assertTrue("testH5Dget_access_plist: ", rdcc_nelmts2 == rdcc_nelmts2 && rdcc_nbytes2 == rdcc_nbytes2); } @Test - public void testH5Dget_space_status() { + public void testH5Dget_space_status() + { int[][] write_dset_data = new int[DIM_X][DIM_Y]; - int space_status = -1; - int space_status0 = -1; + int space_status = -1; + int space_status0 = -1; // Initialize the dataset. for (int indx = 0; indx < DIM_X; indx++) @@ -466,7 +529,8 @@ public class TestH5D { catch (Exception e) { e.printStackTrace(); } - assertTrue("testH5Dget_space_status0 - H5.H5Dget_space_status: ", space_status0 == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode()); + assertTrue("testH5Dget_space_status0 - H5.H5Dget_space_status: ", + space_status0 == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode()); // Retrieve and print space status and storage size for dset. try { @@ -475,12 +539,12 @@ public class TestH5D { catch (Exception e) { e.printStackTrace(); } - assertFalse("testH5Dget_space_status - H5.H5Dget_space_status: ", space_status == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode()); + assertFalse("testH5Dget_space_status - H5.H5Dget_space_status: ", + space_status == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode()); // Write the data to the dataset. try { - H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, write_dset_data); } catch (Exception e) { @@ -494,16 +558,18 @@ public class TestH5D { catch (Exception e) { e.printStackTrace(); } - assertTrue("testH5Dget_space_status - H5.H5Dget_space_status: ", space_status == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode()); + assertTrue("testH5Dget_space_status - H5.H5Dget_space_status: ", + space_status == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode()); } @Test(expected = HDF5LibraryException.class) - public void testH5Dget_space_closed() throws Throwable { + public void testH5Dget_space_closed() throws Throwable + { long dataset_id = HDF5Constants.H5I_INVALID_HID; try { - dataset_id = H5.H5Dcreate(H5fid, "dset", - HDF5Constants.H5T_STD_I32BE, H5dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + dataset_id = + H5.H5Dcreate(H5fid, "dset", HDF5Constants.H5T_STD_I32BE, H5dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -516,7 +582,8 @@ public class TestH5D { } @Test - public void testH5Dget_space() { + public void testH5Dget_space() + { long dataspace_id = HDF5Constants.H5I_INVALID_HID; _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); @@ -540,12 +607,13 @@ public class TestH5D { } @Test(expected = HDF5LibraryException.class) - public void testH5Dget_type_closed() throws Throwable { + public void testH5Dget_type_closed() throws Throwable + { long dataset_id = HDF5Constants.H5I_INVALID_HID; try { - dataset_id = H5.H5Dcreate(H5fid, "dset", - HDF5Constants.H5T_STD_I32BE, H5dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + dataset_id = + H5.H5Dcreate(H5fid, "dset", HDF5Constants.H5T_STD_I32BE, H5dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -558,7 +626,8 @@ public class TestH5D { } @Test - public void testH5Dget_type() { + public void testH5Dget_type() + { long datatype_id = HDF5Constants.H5I_INVALID_HID; _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); @@ -582,9 +651,10 @@ public class TestH5D { } @Test - public void testH5Dget_offset() { + public void testH5Dget_offset() + { int[][] write_dset_data = new int[DIM_X][DIM_Y]; - long dset_address = 0; + long dset_address = 0; _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); try { @@ -600,8 +670,7 @@ public class TestH5D { } // Write the data to the dataset. try { - H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, write_dset_data); } catch (Exception e) { @@ -621,15 +690,16 @@ public class TestH5D { } @Test - public void testH5Dfill_null() { - int[] buf_data = new int[DIM_X*DIM_Y]; + public void testH5Dfill_null() + { + int[] buf_data = new int[DIM_X * DIM_Y]; // Initialize memory buffer for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) { buf_data[(indx * DIM_Y) + jndx] = indx * jndx - jndx; } - byte[] buf_array = HDFNativeData.intToByte(0, DIM_X*DIM_Y, buf_data); + byte[] buf_array = HDFNativeData.intToByte(0, DIM_X * DIM_Y, buf_data); // Fill selection in memory try { @@ -644,12 +714,13 @@ public class TestH5D { // Verify memory buffer the hard way for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) - assertTrue("H5.H5Dfill: [" + indx+","+jndx + "] ", buf_data[(indx * DIM_Y) + jndx] == 0); + assertTrue("H5.H5Dfill: [" + indx + "," + jndx + "] ", buf_data[(indx * DIM_Y) + jndx] == 0); } @Test - public void testH5Dfill() { - int[] buf_data = new int[DIM_X*DIM_Y]; + public void testH5Dfill() + { + int[] buf_data = new int[DIM_X * DIM_Y]; byte[] fill_value = HDFNativeData.intToByte(254); // Initialize memory buffer @@ -657,11 +728,12 @@ public class TestH5D { for (int jndx = 0; jndx < DIM_Y; jndx++) { buf_data[(indx * DIM_Y) + jndx] = indx * jndx - jndx; } - byte[] buf_array = HDFNativeData.intToByte(0, DIM_X*DIM_Y, buf_data); + byte[] buf_array = HDFNativeData.intToByte(0, DIM_X * DIM_Y, buf_data); // Fill selection in memory try { - H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid); + H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, + H5dsid); } catch (Exception err) { err.printStackTrace(); @@ -672,46 +744,51 @@ public class TestH5D { // Verify memory buffer the hard way for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) - assertTrue("H5.H5Dfill: [" + indx+","+jndx + "] ", buf_data[(indx * DIM_Y) + jndx] == 254); + assertTrue("H5.H5Dfill: [" + indx + "," + jndx + "] ", + buf_data[(indx * DIM_Y) + jndx] == 254); } @Test - public void testH5Diterate() { + public void testH5Diterate() + { final int SPACE_RANK = 2; final int SPACE_FILL = 254; class H5D_iter_data implements H5D_iterate_t { - public int fill_value; /* The fill value to check */ - public long fill_curr_coord; /* Current coordinate to examine */ - public long[] fill_coords; /* Pointer to selection's coordinates */ + public int fill_value; /* The fill value to check */ + public long fill_curr_coord; /* Current coordinate to examine */ + public long[] fill_coords; /* Pointer to selection's coordinates */ } H5D_iterate_t iter_data = new H5D_iter_data(); class H5D_iter_callback implements H5D_iterate_cb { - public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_iterate_t op_data) { - //Check value in current buffer location + public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_iterate_t op_data) + { + // Check value in current buffer location int element = HDFNativeData.byteToInt(elem_buf, 0); - if(element != ((H5D_iter_data)op_data).fill_value) + if (element != ((H5D_iter_data)op_data).fill_value) return -1; - //Check number of dimensions - if(ndim != SPACE_RANK) - return(-1); - //Check Coordinates + // Check number of dimensions + if (ndim != SPACE_RANK) + return (-1); + // Check Coordinates long[] fill_coords = new long[2]; - fill_coords[0] = ((H5D_iter_data)op_data).fill_coords[(int) (2 * ((H5D_iter_data)op_data).fill_curr_coord)]; - fill_coords[1] = ((H5D_iter_data)op_data).fill_coords[(int) (2 * ((H5D_iter_data)op_data).fill_curr_coord) + 1]; + fill_coords[0] = + ((H5D_iter_data)op_data).fill_coords[(int)(2 * ((H5D_iter_data)op_data).fill_curr_coord)]; + fill_coords[1] = ((H5D_iter_data)op_data) + .fill_coords[(int)(2 * ((H5D_iter_data)op_data).fill_curr_coord) + 1]; ((H5D_iter_data)op_data).fill_curr_coord++; - if(fill_coords[0] != point[0]) - return(-1); - if(fill_coords[1] != point[1]) - return(-1); + if (fill_coords[0] != point[0]) + return (-1); + if (fill_coords[1] != point[1]) + return (-1); - return(0); + return (0); } } - int[] buf_data = new int[DIM_X*DIM_Y]; + int[] buf_data = new int[DIM_X * DIM_Y]; byte[] fill_value = HDFNativeData.intToByte(SPACE_FILL); // Initialize memory buffer @@ -719,11 +796,12 @@ public class TestH5D { for (int jndx = 0; jndx < DIM_Y; jndx++) { buf_data[(indx * DIM_Y) + jndx] = indx * jndx - jndx; } - byte[] buf_array = HDFNativeData.intToByte(0, DIM_X*DIM_Y, buf_data); + byte[] buf_array = HDFNativeData.intToByte(0, DIM_X * DIM_Y, buf_data); // Fill selection in memory try { - H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid); + H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, + H5dsid); } catch (Exception err) { err.printStackTrace(); @@ -731,19 +809,20 @@ public class TestH5D { } // Initialize the iterator structure - ((H5D_iter_data)iter_data).fill_value = SPACE_FILL; + ((H5D_iter_data)iter_data).fill_value = SPACE_FILL; ((H5D_iter_data)iter_data).fill_curr_coord = 0; // Set the coordinates of the selection - ((H5D_iter_data)iter_data).fill_coords = new long[DIM_X*DIM_Y*SPACE_RANK]; /* Coordinates of selection */ + ((H5D_iter_data)iter_data).fill_coords = + new long[DIM_X * DIM_Y * SPACE_RANK]; /* Coordinates of selection */ for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) { - ((H5D_iter_data)iter_data).fill_coords[2*(indx * DIM_Y + jndx)] = indx; - ((H5D_iter_data)iter_data).fill_coords[2*(indx * DIM_Y + jndx) + 1] = jndx; + ((H5D_iter_data)iter_data).fill_coords[2 * (indx * DIM_Y + jndx)] = indx; + ((H5D_iter_data)iter_data).fill_coords[2 * (indx * DIM_Y + jndx) + 1] = jndx; } /* end for */ // Iterate through selection, verifying correct data H5D_iterate_cb iter_cb = new H5D_iter_callback(); - int op_status = -1; + int op_status = -1; try { op_status = H5.H5Diterate(buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid, iter_cb, iter_data); } @@ -755,47 +834,51 @@ public class TestH5D { } @Test - public void testH5Diterate_write() { + public void testH5Diterate_write() + { final int SPACE_RANK = 2; final int SPACE_FILL = 254; class H5D_iter_data implements H5D_iterate_t { - public int fill_value; /* The fill value to check */ - public long fill_curr_coord; /* Current coordinate to examine */ - public long[] fill_coords; /* Pointer to selection's coordinates */ + public int fill_value; /* The fill value to check */ + public long fill_curr_coord; /* Current coordinate to examine */ + public long[] fill_coords; /* Pointer to selection's coordinates */ } H5D_iterate_t iter_data = new H5D_iter_data(); class H5D_iter_callback implements H5D_iterate_cb { - public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_iterate_t op_data) { - //Check value in current buffer location + public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_iterate_t op_data) + { + // Check value in current buffer location int element = HDFNativeData.byteToInt(elem_buf, 0); - if(element != ((H5D_iter_data)op_data).fill_value) + if (element != ((H5D_iter_data)op_data).fill_value) return -1; - //Check number of dimensions - if(ndim != SPACE_RANK) - return(-1); - //Check Coordinates + // Check number of dimensions + if (ndim != SPACE_RANK) + return (-1); + // Check Coordinates long[] fill_coords = new long[2]; - fill_coords[0] = ((H5D_iter_data)op_data).fill_coords[(int) (2 * ((H5D_iter_data)op_data).fill_curr_coord)]; - fill_coords[1] = ((H5D_iter_data)op_data).fill_coords[(int) (2 * ((H5D_iter_data)op_data).fill_curr_coord) + 1]; + fill_coords[0] = + ((H5D_iter_data)op_data).fill_coords[(int)(2 * ((H5D_iter_data)op_data).fill_curr_coord)]; + fill_coords[1] = ((H5D_iter_data)op_data) + .fill_coords[(int)(2 * ((H5D_iter_data)op_data).fill_curr_coord) + 1]; ((H5D_iter_data)op_data).fill_curr_coord++; - if(fill_coords[0] != point[0]) - return(-1); - if(fill_coords[1] != point[1]) - return(-1); + if (fill_coords[0] != point[0]) + return (-1); + if (fill_coords[1] != point[1]) + return (-1); element -= 128; byte[] new_elembuf = HDFNativeData.intToByte(element); - elem_buf[0] = new_elembuf[0]; - elem_buf[1] = new_elembuf[1]; - elem_buf[2] = new_elembuf[2]; - elem_buf[3] = new_elembuf[3]; - return(0); + elem_buf[0] = new_elembuf[0]; + elem_buf[1] = new_elembuf[1]; + elem_buf[2] = new_elembuf[2]; + elem_buf[3] = new_elembuf[3]; + return (0); } } - int[] buf_data = new int[DIM_X*DIM_Y]; + int[] buf_data = new int[DIM_X * DIM_Y]; byte[] fill_value = HDFNativeData.intToByte(SPACE_FILL); // Initialize memory buffer @@ -803,11 +886,12 @@ public class TestH5D { for (int jndx = 0; jndx < DIM_Y; jndx++) { buf_data[(indx * DIM_Y) + jndx] = indx * jndx - jndx; } - byte[] buf_array = HDFNativeData.intToByte(0, DIM_X*DIM_Y, buf_data); + byte[] buf_array = HDFNativeData.intToByte(0, DIM_X * DIM_Y, buf_data); // Fill selection in memory try { - H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid); + H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, + H5dsid); } catch (Exception err) { err.printStackTrace(); @@ -815,19 +899,20 @@ public class TestH5D { } // Initialize the iterator structure - ((H5D_iter_data)iter_data).fill_value = SPACE_FILL; + ((H5D_iter_data)iter_data).fill_value = SPACE_FILL; ((H5D_iter_data)iter_data).fill_curr_coord = 0; // Set the coordinates of the selection - ((H5D_iter_data)iter_data).fill_coords = new long[DIM_X*DIM_Y*SPACE_RANK]; /* Coordinates of selection */ + ((H5D_iter_data)iter_data).fill_coords = + new long[DIM_X * DIM_Y * SPACE_RANK]; /* Coordinates of selection */ for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) { - ((H5D_iter_data)iter_data).fill_coords[2*(indx * DIM_Y + jndx)] = indx; - ((H5D_iter_data)iter_data).fill_coords[2*(indx * DIM_Y + jndx) + 1] = jndx; + ((H5D_iter_data)iter_data).fill_coords[2 * (indx * DIM_Y + jndx)] = indx; + ((H5D_iter_data)iter_data).fill_coords[2 * (indx * DIM_Y + jndx) + 1] = jndx; } /* end for */ // Iterate through selection, verifying correct data H5D_iterate_cb iter_cb = new H5D_iter_callback(); - int op_status = -1; + int op_status = -1; try { op_status = H5.H5Diterate(buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid, iter_cb, iter_data); } @@ -842,29 +927,27 @@ public class TestH5D { // Verify memory buffer the hard way for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) - assertTrue("H5.H5Diterate: [" + indx+","+jndx + "] "+buf_data[(indx * DIM_Y) + jndx], buf_data[(indx * DIM_Y) + jndx] == 126); + assertTrue("H5.H5Diterate: [" + indx + "," + jndx + "] " + buf_data[(indx * DIM_Y) + jndx], + buf_data[(indx * DIM_Y) + jndx] == 126); } @Test - public void testH5Dvlen_get_buf_size() { - String[] str_data = { "Parting", "is such", "sweet", "sorrow.", - "Testing", "one", "two", "three.", - "Dog,", "man's", "best", "friend.", - "Diamonds", "are", "a", "girls!", - "S A", "T U R", "D A Y", "night", - "That's", "all", "folks", "!!!" }; - long vl_size = -1; /* Number of bytes used */ + public void testH5Dvlen_get_buf_size() + { + String[] str_data = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.", + "Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!", + "S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"}; + long vl_size = -1; /* Number of bytes used */ long str_data_bytes = 0; for (int idx = 0; idx < str_data.length; idx++) - str_data_bytes += str_data[idx].length() + 1; //Account for terminating null + str_data_bytes += str_data[idx].length() + 1; // Account for terminating null _createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); try { if ((H5did >= 0) && (H5dtid >= 0)) - H5.H5Dwrite_VLStrings(H5did, H5dtid, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, str_data); + H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, str_data); } catch (Exception e) { e.printStackTrace(); @@ -879,63 +962,55 @@ public class TestH5D { } @Test(expected = IllegalArgumentException.class) - public void testH5Dvlen_read_invalid_buffer() throws Throwable { - String[] str_data = { "Parting", "is such", "sweet", "sorrow.", - "Testing", "one", "two", "three.", - "Dog,", "man's", "best", "friend.", - "Diamonds", "are", "a", "girls!", - "S A", "T U R", "D A Y", "night", - "That's", "all", "folks", "!!!" }; - byte[] read_data = new byte[512]; + public void testH5Dvlen_read_invalid_buffer() throws Throwable + { + String[] str_data = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.", + "Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!", + "S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"}; + byte[] read_data = new byte[512]; _createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); try { - H5.H5Dwrite_VLStrings(H5did, H5dtid, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, str_data); + H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, str_data); } catch (Exception e) { e.printStackTrace(); } - H5.H5Dread(H5did, H5dtid, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, read_data); + H5.H5Dread(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, + read_data); } @Test - public void testH5Dvlen_write_read() { - String[] str_wdata = { "Parting", "is such", "sweet", "sorrow.", - "Testing", "one", "two", "three.", - "Dog,", "man's", "best", "friend.", - "Diamonds", "are", "a", "girls!", - "S A", "T U R", "D A Y", "night", - "That's", "all", "folks", "!!!" }; + public void testH5Dvlen_write_read() + { + String[] str_wdata = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.", + "Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!", + "S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"}; String[] str_rdata = new String[DIM_X * DIM_Y]; _createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); try { if ((H5did >= 0) && (H5dtid >= 0)) - H5.H5Dwrite_VLStrings(H5did, H5dtid, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, str_wdata); + H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, str_wdata); } catch (Exception e) { e.printStackTrace(); } try { if ((H5did >= 0) && (H5dtid >= 0)) - H5.H5Dread_VLStrings(H5did, H5dtid, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, str_rdata); + H5.H5Dread_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, str_rdata); } catch (Exception e) { e.printStackTrace(); } for (int v = 0; v < DIM_X * DIM_Y; v++) - assertTrue("testH5Dvlen_write_read " + str_wdata[v] + " == " + str_rdata[v], str_wdata[v] == str_wdata[v]); + assertTrue("testH5Dvlen_write_read " + str_wdata[v] + " == " + str_rdata[v], + str_wdata[v] == str_wdata[v]); } - } |