VFD SWMR: Merges from develop (#1670)

* Cleans up SWMR test scripts (both legacy and VFD)

* Brings over format source changes for Java

* Normalization of HL, Fortran, C++, Java w/ develop

* Removes the STATIC flavor of FUNC_ENTER macros (#1622)

* Removes the STATIC flavor of FUNC_ENTER macros

* Remove H5_NO_ALIGNMENT_RESTRICTIONS (#1426)

* Do not conditionally compile code that uses a pointer dereference
and assignment to copy a potentially unaligned variable to aligned
automatic storage, or vice versa.  Instead, always use naked `memcpy(3)`s.
Disassembling the generated code reveals that the `memcpy(3)`s optimize
(`-O3`) to a single `mov` instruction for x86_64, which is not strict
about alignment.

This change reduces the size of code and scripts by 143 lines, eases
our way to cross-compilation, and avoids invoking undefined behavior.

* Committing clang-format changes

* Per discussion, use HD and add comments.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes unused definitions from module headers (#1624)

* Misc stuff from develop (includes some parallel things)

* Brings over SWMR test quiet mode changes from develop

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

1 files changed, 244 insertions, 147 deletions

diff --git a/java/test/TestH5OcopyOld.java b/java/test/TestH5OcopyOld.java
index e547051..2cfccc7 100644
--- a/java/test/TestH5OcopyOld.java
+++ b/java/test/TestH5OcopyOld.java
@@ -31,20 +31,22 @@ import org.junit.Test;
 import org.junit.rules.TestName;
 
 public class TestH5OcopyOld {
-    @Rule public TestName testname = new TestName();
+    @Rule
+    public TestName testname             = new TestName();
     private static final String FILENAME = "testRefsattributeO.h5";
-    private static final int DIM_X = 4;
-    private static final int DIM_Y = 6;
-    long H5fid = HDF5Constants.H5I_INVALID_HID;
-    long H5dsid = HDF5Constants.H5I_INVALID_HID;
-    long H5did1 = HDF5Constants.H5I_INVALID_HID;
-    long H5did2 = HDF5Constants.H5I_INVALID_HID;
-    long H5gcpl = HDF5Constants.H5I_INVALID_HID;
-    long H5gid = HDF5Constants.H5I_INVALID_HID;
-    long H5dsid2 = HDF5Constants.H5I_INVALID_HID;
-    long[] dims = { 2 };
-
-    private final void _deleteFile(String filename) {
+    private static final int DIM_X       = 4;
+    private static final int DIM_Y       = 6;
+    long H5fid                           = HDF5Constants.H5I_INVALID_HID;
+    long H5dsid                          = HDF5Constants.H5I_INVALID_HID;
+    long H5did1                          = HDF5Constants.H5I_INVALID_HID;
+    long H5did2                          = HDF5Constants.H5I_INVALID_HID;
+    long H5gcpl                          = HDF5Constants.H5I_INVALID_HID;
+    long H5gid                           = HDF5Constants.H5I_INVALID_HID;
+    long H5dsid2                         = HDF5Constants.H5I_INVALID_HID;
+    long[] dims                          = {2};
+
+    private final void _deleteFile(String filename)
+    {
         File file = new File(filename);
 
         if (file.exists()) {
@@ -57,93 +59,119 @@ public class TestH5OcopyOld {
         }
     }
 
-    private final long _createDataset(long fid, long dsid, String name, long dapl) {
+    private final long _createDataset(long fid, long dsid, String name, long dapl)
+    {
         long did = HDF5Constants.H5I_INVALID_HID;
         try {
-            did = H5.H5Dcreate(fid, name,
-                        HDF5Constants.H5T_STD_I32BE, dsid,
-                        HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+            did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+                               HDF5Constants.H5P_DEFAULT, dapl);
         }
         catch (Throwable err) {
             err.printStackTrace();
             fail("H5.H5Dcreate: " + err);
         }
-        assertTrue("TestH5O._createDataset: ",did >= 0);
+        assertTrue("TestH5O._createDataset: ", did >= 0);
 
         return did;
     }
 
-    private final long _createGroup(long fid, String name) {
+    private final long _createGroup(long fid, String name)
+    {
         long gid = HDF5Constants.H5I_INVALID_HID;
         try {
             H5gcpl = HDF5Constants.H5P_DEFAULT;
-            gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
-                    H5gcpl, HDF5Constants.H5P_DEFAULT);
+            gid    = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, H5gcpl, HDF5Constants.H5P_DEFAULT);
         }
         catch (Throwable err) {
             err.printStackTrace();
             fail("H5.H5Gcreate: " + err);
         }
-        assertTrue("TestH5O._createGroup: ",gid >= 0);
+        assertTrue("TestH5O._createGroup: ", gid >= 0);
 
         return gid;
     }
 
     @Before
-    public void createH5file()
-            throws NullPointerException, HDF5Exception {
-        assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+    public void createH5file() throws NullPointerException, HDF5Exception
+    {
+        assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
         System.out.print(testname.getMethodName());
         try {
-            H5fid = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC,
-                    HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
-            H5dsid2 =  H5.H5Screate(HDF5Constants.H5S_SCALAR);
-            H5did1 = _createDataset(H5fid, H5dsid2, "DS2", HDF5Constants.H5P_DEFAULT);
-            H5dsid = H5.H5Screate_simple(1, dims, null);
-            H5gid = _createGroup(H5fid, "/G1");
-            H5did2 = _createDataset(H5gid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT);
+            H5fid   = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+                                 HDF5Constants.H5P_DEFAULT);
+            H5dsid2 = H5.H5Screate(HDF5Constants.H5S_SCALAR);
+            H5did1  = _createDataset(H5fid, H5dsid2, "DS2", HDF5Constants.H5P_DEFAULT);
+            H5dsid  = H5.H5Screate_simple(1, dims, null);
+            H5gid   = _createGroup(H5fid, "/G1");
+            H5did2  = _createDataset(H5gid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT);
         }
         catch (Throwable err) {
             err.printStackTrace();
             fail("TestH5O.createH5file: " + err);
         }
-        assertTrue("TestH5O.createH5file: H5.H5Fcreate: ",H5fid >= 0);
-        assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ",H5dsid >= 0);
-        assertTrue("TestH5O.createH5file: H5.H5Gcreate: ",H5gid >= 0);
+        assertTrue("TestH5O.createH5file: H5.H5Fcreate: ", H5fid >= 0);
+        assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ", H5dsid >= 0);
+        assertTrue("TestH5O.createH5file: H5.H5Gcreate: ", H5gid >= 0);
 
         H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
     }
 
     @After
-    public void deleteH5file() throws HDF5LibraryException {
+    public void deleteH5file() throws HDF5LibraryException
+    {
         if (H5gid > 0)
-            try {H5.H5Gclose(H5gid);} catch (Exception ex) {}
+            try {
+                H5.H5Gclose(H5gid);
+            }
+            catch (Exception ex) {
+            }
         if (H5did2 > 0)
-            try {H5.H5Dclose(H5did2);} catch (Exception ex) {}
+            try {
+                H5.H5Dclose(H5did2);
+            }
+            catch (Exception ex) {
+            }
         if (H5dsid > 0)
-            try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+            try {
+                H5.H5Sclose(H5dsid);
+            }
+            catch (Exception ex) {
+            }
         if (H5dsid2 > 0)
-            try {H5.H5Sclose(H5dsid2);} catch (Exception ex) {}
+            try {
+                H5.H5Sclose(H5dsid2);
+            }
+            catch (Exception ex) {
+            }
         if (H5did1 > 0)
-            try {H5.H5Dclose(H5did1);} catch (Exception ex) {}
+            try {
+                H5.H5Dclose(H5did1);
+            }
+            catch (Exception ex) {
+            }
         if (H5fid > 0)
-            try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+            try {
+                H5.H5Fclose(H5fid);
+            }
+            catch (Exception ex) {
+            }
 
         _deleteFile(FILENAME);
         System.out.println();
     }
 
     @Test
-    public void testH5OcopyRefsAttr() {
+    public void testH5OcopyRefsAttr()
+    {
         long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
-        byte rbuf0[]=null , rbuf1[] = null;
-        byte[] dset_data = new byte[16];
+        byte rbuf0[] = null, rbuf1[] = null;
+        byte[] dset_data  = new byte[16];
         long attribute_id = HDF5Constants.H5I_INVALID_HID;
 
         try {
             rbuf0 = H5.H5Rcreate(H5fid, "/G1", HDF5Constants.H5R_OBJECT, -1);
             rbuf1 = H5.H5Rcreate(H5fid, "DS2", HDF5Constants.H5R_OBJECT, -1);
-            //System.arraycopy(rbuf0, 0, dset_data, 0, 8);
+            // System.arraycopy(rbuf0, 0, dset_data, 0, 8);
             System.arraycopy(rbuf1, 0, dset_data, 8, 8);
         }
         catch (Exception ex) {
@@ -151,7 +179,8 @@ public class TestH5OcopyOld {
         }
 
         try {
-            attribute_id = H5.H5Acreate(H5did2, "A1", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+            attribute_id = H5.H5Acreate(H5did2, "A1", HDF5Constants.H5T_STD_REF_OBJ, H5dsid,
+                                        HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
             assertTrue("testH5OcopyRefsAttr.H5Acreate: ", attribute_id >= 0);
             H5.H5Awrite(attribute_id, HDF5Constants.H5T_STD_REF_OBJ, dset_data);
 
@@ -161,7 +190,11 @@ public class TestH5OcopyOld {
             fail("testH5OcopyRefsAttr: H5Awrite failed");
         }
         finally {
-            try {H5.H5Aclose(attribute_id);} catch (Exception exx) {}
+            try {
+                H5.H5Aclose(attribute_id);
+            }
+            catch (Exception exx) {
+            }
         }
 
         try {
@@ -171,82 +204,103 @@ public class TestH5OcopyOld {
             H5.H5Ocopy(H5fid, ".", H5fid, "CPYREF", ocp_plist_id, HDF5Constants.H5P_DEFAULT);
         }
         catch (Exception ex) {
-             fail("testH5OcopyRefsAttr: H5Ocopy failed");
+            fail("testH5OcopyRefsAttr: H5Ocopy failed");
         }
         finally {
-            try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {}
+            try {
+                H5.H5Pclose(ocp_plist_id);
+            }
+            catch (Exception ex) {
+            }
         }
     }
 
     @Test
-    public void testH5OcopyRefsDatasettodiffFile() {
-        byte rbuf1[] = null;
-        byte[] dset_data = new byte[16];
+    public void testH5OcopyRefsDatasettodiffFile()
+    {
+        byte rbuf1[]      = null;
+        byte[] dset_data  = new byte[16];
         long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
-        long dataset_id = HDF5Constants.H5I_INVALID_HID;
-        long H5fid2 = HDF5Constants.H5I_INVALID_HID;
+        long dataset_id   = HDF5Constants.H5I_INVALID_HID;
+        long H5fid2       = HDF5Constants.H5I_INVALID_HID;
 
         try {
             rbuf1 = H5.H5Rcreate(H5fid, "DS2", HDF5Constants.H5R_OBJECT, -1);
             System.arraycopy(rbuf1, 0, dset_data, 8, 8);
 
-            dataset_id = H5.H5Dcreate(H5fid, "DSREF",
-                    HDF5Constants.H5T_STD_REF_OBJ, H5dsid,
-                    HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+            dataset_id =
+                H5.H5Dcreate(H5fid, "DSREF", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, HDF5Constants.H5P_DEFAULT,
+                             HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
             assertTrue("testH5OcopyRefsDatasettodiffFile.H5Dcreate: ", dataset_id >= 0);
-            H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ,
-                    HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
-                    HDF5Constants.H5P_DEFAULT, dset_data);
+            H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL,
+                        HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
             H5.H5Dclose(dataset_id);
         }
         catch (Exception ex) {
             fail("testH5OcopyRefsDatasettodiffFile: create dataset failed");
         }
         finally {
-            try {H5.H5Dclose(dataset_id);} catch (Exception exx) {}
+            try {
+                H5.H5Dclose(dataset_id);
+            }
+            catch (Exception exx) {
+            }
         }
 
         try {
-            //create new file
-            H5fid2 = H5.H5Fcreate("copy.h5", HDF5Constants.H5F_ACC_TRUNC,
-                    HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+            // create new file
+            H5fid2 = H5.H5Fcreate("copy.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+                                  HDF5Constants.H5P_DEFAULT);
             assertTrue("testH5OcopyRefsDatasettodiffFile.H5Fcreate: ", H5fid2 >= 0);
             H5.H5Fflush(H5fid2, HDF5Constants.H5F_SCOPE_LOCAL);
         }
         catch (Exception ex) {
-            try {H5.H5Fclose(H5fid2);} catch (Exception exx) {}
+            try {
+                H5.H5Fclose(H5fid2);
+            }
+            catch (Exception exx) {
+            }
             fail("testH5OcopyRefsDatasettodiffFile: H5Fcreate failed");
         }
 
         try {
-            //create object copy property list id and set the flags.
+            // create object copy property list id and set the flags.
             ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
             assertTrue("testH5OcopyRefsDatasettodiffFile.H5Pcreate: ", ocp_plist_id >= 0);
             H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
 
-            //Perform copy function.
+            // Perform copy function.
             H5.H5Ocopy(H5fid, ".", H5fid2, "CPYREFD", ocp_plist_id, HDF5Constants.H5P_DEFAULT);
         }
-        catch (Exception ex){
+        catch (Exception ex) {
             ex.printStackTrace();
             fail("testH5OcopyRefsDatasettodiffFile: H5Ocopy failed");
         }
         finally {
-            try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {}
-            try {H5.H5Fclose(H5fid2);} catch (Exception ex) {}
+            try {
+                H5.H5Pclose(ocp_plist_id);
+            }
+            catch (Exception ex) {
+            }
+            try {
+                H5.H5Fclose(H5fid2);
+            }
+            catch (Exception ex) {
+            }
         }
         _deleteFile("copy.h5");
     }
 
     @Test
-    public void testH5OcopyRefsDatasettosameFile() {
-        byte rbuf0[]=null , rbuf1[] = null;
-        byte[] dset_data = new byte[16];
+    public void testH5OcopyRefsDatasettosameFile()
+    {
+        byte rbuf0[] = null, rbuf1[] = null;
+        byte[] dset_data  = new byte[16];
         long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
-        long dataset_id = HDF5Constants.H5I_INVALID_HID;
-        long did = HDF5Constants.H5I_INVALID_HID;
-        int obj_type = -1;
-        byte[] read_data = new byte[16];
+        long dataset_id   = HDF5Constants.H5I_INVALID_HID;
+        long did          = HDF5Constants.H5I_INVALID_HID;
+        int obj_type      = -1;
+        byte[] read_data  = new byte[16];
 
         try {
             rbuf0 = H5.H5Rcreate(H5fid, "/G1", HDF5Constants.H5R_OBJECT, -1);
@@ -254,19 +308,22 @@ public class TestH5OcopyOld {
             System.arraycopy(rbuf0, 0, dset_data, 0, 8);
             System.arraycopy(rbuf1, 0, dset_data, 8, 8);
 
-            //Create a dataset and write object references to it.
-            dataset_id = H5.H5Dcreate(H5fid, "DSREF",
-                    HDF5Constants.H5T_STD_REF_OBJ, H5dsid,
-                    HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+            // Create a dataset and write object references to it.
+            dataset_id =
+                H5.H5Dcreate(H5fid, "DSREF", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, HDF5Constants.H5P_DEFAULT,
+                             HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
             assertTrue("testH5OcopyRefsDatasettosameFile.H5Dcreate: ", dataset_id >= 0);
-            H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ,
-                    HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
-                    HDF5Constants.H5P_DEFAULT, dset_data);
-            //Close the dataset.
+            H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL,
+                        HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
+            // Close the dataset.
             H5.H5Dclose(dataset_id);
         }
         catch (Exception ex) {
-            try {H5.H5Dclose(dataset_id);} catch (Exception exx) {}
+            try {
+                H5.H5Dclose(dataset_id);
+            }
+            catch (Exception exx) {
+            }
             fail("testH5OcopyRefsDatasettosameFile: create dataset failed");
         }
 
@@ -276,37 +333,50 @@ public class TestH5OcopyOld {
             H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
         }
         catch (Exception ex) {
-            try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {}
+            try {
+                H5.H5Pclose(ocp_plist_id);
+            }
+            catch (Exception exx) {
+            }
             fail("testH5OcopyRefsDatasettosameFile: H5Pset_copy_object failed");
         }
 
-        //Perform copy function.
+        // Perform copy function.
         try {
             H5.H5Ocopy(H5fid, "DSREF", H5fid, "CPYREFD", ocp_plist_id, HDF5Constants.H5P_DEFAULT);
         }
-        catch(Exception ex) {
-            try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {}
+        catch (Exception ex) {
+            try {
+                H5.H5Pclose(ocp_plist_id);
+            }
+            catch (Exception exx) {
+            }
             fail("testH5OcopyRefsDatasettosameFile: H5Ocopy failed");
         }
 
-        //Open the dataset that has been copied
+        // Open the dataset that has been copied
         try {
             did = H5.H5Dopen(H5fid, "DSREF", HDF5Constants.H5P_DEFAULT);
             assertTrue("testH5OcopyRefsDatasettosameFile.H5Dopen: ", did >= 0);
         }
         catch (Exception e) {
-            try {H5.H5Dclose(did);} catch (Exception exx) {}
+            try {
+                H5.H5Dclose(did);
+            }
+            catch (Exception exx) {
+            }
             e.printStackTrace();
             fail("testH5OcopyRefsDatasettosameFile: H5Dopen failed");
         }
 
         try {
-            //Read the dataset object references in the read_data buffer.
-            H5.H5Dread(did, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL,HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, read_data);
+            // Read the dataset object references in the read_data buffer.
+            H5.H5Dread(did, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+                       HDF5Constants.H5P_DEFAULT, read_data);
             System.arraycopy(read_data, 0, rbuf0, 0, 8);
             System.arraycopy(read_data, 8, rbuf1, 0, 8);
 
-            //Get the type of object the reference points to.
+            // Get the type of object the reference points to.
             obj_type = H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_OBJECT, rbuf1);
             assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET);
 
@@ -317,22 +387,32 @@ public class TestH5OcopyOld {
             ex.printStackTrace();
         }
         finally {
-            try {H5.H5Dclose(did);} catch (Exception ex) {}
-            try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {}
+            try {
+                H5.H5Dclose(did);
+            }
+            catch (Exception ex) {
+            }
+            try {
+                H5.H5Pclose(ocp_plist_id);
+            }
+            catch (Exception ex) {
+            }
         }
-     }
-    
+    }
+
     @Test
-    public void testH5OcopyNullRef() throws Throwable {
+    public void testH5OcopyNullRef() throws Throwable
+    {
         final long _pid_ = HDF5Constants.H5P_DEFAULT;
-        long sid = HDF5Constants.H5I_INVALID_HID;
-        long did = HDF5Constants.H5I_INVALID_HID;
-        long aid = HDF5Constants.H5I_INVALID_HID;
+        long sid         = HDF5Constants.H5I_INVALID_HID;
+        long did         = HDF5Constants.H5I_INVALID_HID;
+        long aid         = HDF5Constants.H5I_INVALID_HID;
 
         try {
             sid = H5.H5Screate_simple(1, new long[] {1}, null);
             assertTrue("testH5OcopyNullRef.H5Screate_simple: ", sid >= 0);
-            did = H5.H5Dcreate(H5fid, "Dataset_with_null_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_, _pid_, _pid_);
+            did = H5.H5Dcreate(H5fid, "Dataset_with_null_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_,
+                               _pid_, _pid_);
             assertTrue("testH5OcopyNullRef.H5Dcreate: ", did > 0);
             aid = H5.H5Acreate(did, "Null_Ref", HDF5Constants.H5T_STD_REF_OBJ, sid, _pid_, _pid_);
             assertTrue("testH5OcopyNullRef.H5Acreate: ", aid > 0);
@@ -341,57 +421,74 @@ public class TestH5OcopyOld {
             ex.printStackTrace();
         }
         finally {
-            try {H5.H5Dclose(did);} catch (Exception exx) {}
-            try {H5.H5Aclose(aid);} catch (Exception exx) {}
-            try {H5.H5Sclose(sid);} catch (Exception exx) {}
+            try {
+                H5.H5Dclose(did);
+            }
+            catch (Exception exx) {
+            }
+            try {
+                H5.H5Aclose(aid);
+            }
+            catch (Exception exx) {
+            }
+            try {
+                H5.H5Sclose(sid);
+            }
+            catch (Exception exx) {
+            }
         }
 
         long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
         assertTrue("testH5OcopyNullRef.H5Pcreate: ", ocp_plist_id >= 0);
         H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
         try {
-            H5.H5Ocopy(H5fid, "/Dataset_with_null_Ref", H5fid, "/Dataset_with_null_Ref_cp", ocp_plist_id, _pid_);
+            H5.H5Ocopy(H5fid, "/Dataset_with_null_Ref", H5fid, "/Dataset_with_null_Ref_cp", ocp_plist_id,
+                       _pid_);
         }
         finally {
-            try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {}
+            try {
+                H5.H5Pclose(ocp_plist_id);
+            }
+            catch (Exception exx) {
+            }
         }
     }
 
-//    @Ignore because of JIRA HDF5-9547
-//    @Test(expected = HDF5LibraryException.class)
-//    public void testH5OcopyInvalidRef() throws Throwable {
-//        final long _pid_ = HDF5Constants.H5P_DEFAULT;
-//        long sid = HDF5Constants.H5I_INVALID_HID;
-//        long did = HDF5Constants.H5I_INVALID_HID;
-//        long aid = HDF5Constants.H5I_INVALID_HID;
-//
-//        try {
-//            sid = H5.H5Screate_simple(1, new long[] {1}, null);
-//            assertTrue("testH5OcopyInvalidRef.H5Screate_simple: ", sid >= 0);
-//            did = H5.H5Dcreate(H5fid, "Dataset_with_invalid_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_, _pid_, _pid_);
-//            assertTrue("testH5OcopyInvalidRef.H5Dcreate: ", did > 0);
-//            aid = H5.H5Acreate(did, "Invalid_Ref", HDF5Constants.H5T_STD_REF_OBJ, sid, _pid_, _pid_);
-//            assertTrue("testH5OcopyInvalidRef.H5Acreate: ", aid > 0);
-//            H5.H5Awrite(aid, HDF5Constants.H5T_STD_REF_OBJ, new long[]{-1});
-//        }
-//        catch (Exception ex) {
-//            ex.printStackTrace();
-//        }
-//        finally {
-//            try {H5.H5Dclose(did);} catch (Exception exx) {}
-//            try {H5.H5Aclose(aid);} catch (Exception exx) {}
-//            try {H5.H5Sclose(sid);} catch (Exception exx) {}
-//        }
-//
-//        long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
-//        assertTrue("testH5OcopyInvalidRef.H5Pcreate: ", ocp_plist_id >= 0);
-//        H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
-//        try {
-//            H5.H5Ocopy(H5fid, "/Dataset_with_invalid_Ref", H5fid, "/Dataset_with_invalid_Ref_cp", ocp_plist_id, _pid_);
-//        }
-//        finally {
-//            try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {}
-//        }
-//    }
-
+    //    @Ignore because of JIRA HDF5-9547
+    //    @Test(expected = HDF5LibraryException.class)
+    //    public void testH5OcopyInvalidRef() throws Throwable {
+    //        final long _pid_ = HDF5Constants.H5P_DEFAULT;
+    //        long sid = HDF5Constants.H5I_INVALID_HID;
+    //        long did = HDF5Constants.H5I_INVALID_HID;
+    //        long aid = HDF5Constants.H5I_INVALID_HID;
+    //
+    //        try {
+    //            sid = H5.H5Screate_simple(1, new long[] {1}, null);
+    //            assertTrue("testH5OcopyInvalidRef.H5Screate_simple: ", sid >= 0);
+    //            did = H5.H5Dcreate(H5fid, "Dataset_with_invalid_Ref", HDF5Constants.H5T_NATIVE_INT, sid,
+    //            _pid_, _pid_, _pid_); assertTrue("testH5OcopyInvalidRef.H5Dcreate: ", did > 0); aid =
+    //            H5.H5Acreate(did, "Invalid_Ref", HDF5Constants.H5T_STD_REF_OBJ, sid, _pid_, _pid_);
+    //            assertTrue("testH5OcopyInvalidRef.H5Acreate: ", aid > 0);
+    //            H5.H5Awrite(aid, HDF5Constants.H5T_STD_REF_OBJ, new long[]{-1});
+    //        }
+    //        catch (Exception ex) {
+    //            ex.printStackTrace();
+    //        }
+    //        finally {
+    //            try {H5.H5Dclose(did);} catch (Exception exx) {}
+    //            try {H5.H5Aclose(aid);} catch (Exception exx) {}
+    //            try {H5.H5Sclose(sid);} catch (Exception exx) {}
+    //        }
+    //
+    //        long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
+    //        assertTrue("testH5OcopyInvalidRef.H5Pcreate: ", ocp_plist_id >= 0);
+    //        H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
+    //        try {
+    //            H5.H5Ocopy(H5fid, "/Dataset_with_invalid_Ref", H5fid, "/Dataset_with_invalid_Ref_cp",
+    //            ocp_plist_id, _pid_);
+    //        }
+    //        finally {
+    //            try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {}
+    //        }
+    //    }
 }