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| author | Allen Byrne <50328838+byrnHDF@users.noreply.github.com> | 2022-04-22 15:24:27 (GMT) |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-04-22 15:24:27 (GMT) |
| commit | 974aefb8416d78b0687a54e5f72f21d0ca72ae2d (patch) | |
| tree | 0fe4e4327b95c38f362ceace220d59cb08aa88a3 /java/test | |
| parent | f5042fd4d3549e9e3453ab99d81bb46f1688b240 (diff) | |
| download | hdf5-974aefb8416d78b0687a54e5f72f21d0ca72ae2d.zip hdf5-974aefb8416d78b0687a54e5f72f21d0ca72ae2d.tar.gz hdf5-974aefb8416d78b0687a54e5f72f21d0ca72ae2d.tar.bz2 | |
Add java clang-format (#1672)
Diffstat (limited to 'java/test')
45 files changed, 7584 insertions, 4913 deletions
diff --git a/java/test/CMakeLists.txt b/java/test/CMakeLists.txt index 9362b42..3e18d35 100644 --- a/java/test/CMakeLists.txt +++ b/java/test/CMakeLists.txt @@ -86,6 +86,13 @@ foreach (test_file ${HDF5_JAVA_TEST_SOURCES}) add_dependencies (${HDF5_JAVA_TEST_LIB_TARGET}_${test_file} ${HDF5_JAVA_HDF5_LIB_TARGET}) set_target_properties (${HDF5_JAVA_TEST_LIB_TARGET}_${test_file} PROPERTIES FOLDER test/java) + + #----------------------------------------------------------------------------- + # Add Target to clang-format + #----------------------------------------------------------------------------- + if (HDF5_ENABLE_FORMATTERS) + clang_format (HDF5_JAVA_TEST_${test_file}_SRC_FORMAT ${test_file}.java) + endif () endforeach () foreach (h5_file ${HDF5_JAVA_TEST_SOURCES}) diff --git a/java/test/TestAll.java b/java/test/TestAll.java index 16414e4..c22fbfe 100644 --- a/java/test/TestAll.java +++ b/java/test/TestAll.java @@ -16,21 +16,17 @@ import org.junit.runner.RunWith; import org.junit.runners.Suite; @RunWith(Suite.class) -@Suite.SuiteClasses( { TestH5.class, - TestH5Eparams.class, TestH5Eregister.class, TestH5Edefault.class, TestH5E.class, - TestH5Fparams.class, TestH5Fbasic.class, TestH5F.class, TestH5Fswmr.class, - TestH5Gbasic.class, TestH5G.class, TestH5Giterate.class, - TestH5Sbasic.class, TestH5S.class, - TestH5Tparams.class, TestH5Tbasic.class, TestH5T.class, - TestH5Dparams.class, TestH5D.class, TestH5Dplist.class, TestH5Drw.class, - TestH5Lparams.class, TestH5Lbasic.class, TestH5Lcreate.class, - TestH5R.class, TestH5Rref.class, - TestH5P.class, TestH5PData.class, TestH5Pfapl.class, TestH5Pvirtual.class, TestH5Plist.class, - TestH5Pfapls3.class, TestH5Pfaplhdfs.class, - TestH5A.class, TestH5Arw.class, - TestH5Oparams.class, TestH5Obasic.class, TestH5Ocopy.class, TestH5Ocreate.class, - TestH5PL.class, TestH5Z.class -}) +@Suite.SuiteClasses({TestH5.class, TestH5Eparams.class, TestH5Eregister.class, TestH5Edefault.class, + TestH5E.class, TestH5Fparams.class, TestH5Fbasic.class, TestH5F.class, + TestH5Fswmr.class, TestH5Gbasic.class, TestH5G.class, TestH5Giterate.class, + TestH5Sbasic.class, TestH5S.class, TestH5Tparams.class, TestH5Tbasic.class, + TestH5T.class, TestH5Dparams.class, TestH5D.class, TestH5Dplist.class, + TestH5Drw.class, TestH5Lparams.class, TestH5Lbasic.class, TestH5Lcreate.class, + TestH5R.class, TestH5Rref.class, TestH5P.class, TestH5PData.class, + TestH5Pfapl.class, TestH5Pvirtual.class, TestH5Plist.class, TestH5Pfapls3.class, + TestH5Pfaplhdfs.class, TestH5A.class, TestH5Arw.class, TestH5Oparams.class, + TestH5Obasic.class, TestH5Ocopy.class, TestH5Ocreate.class, TestH5PL.class, + TestH5Z.class}) public class TestAll { } diff --git a/java/test/TestH5.java b/java/test/TestH5.java index 9ea3069..3d3d741 100644 --- a/java/test/TestH5.java +++ b/java/test/TestH5.java @@ -20,9 +20,9 @@ import static org.junit.Assert.fail; import java.io.ByteArrayOutputStream; import java.io.File; import java.io.FileInputStream; +import java.io.FileNotFoundException; import java.io.FileOutputStream; import java.io.FileReader; -import java.io.FileNotFoundException; import java.io.IOException; import java.io.ObjectInputStream; import java.io.ObjectOutputStream; @@ -46,45 +46,53 @@ import org.junit.rules.TestName; * */ public class TestH5 { - @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "testData.h5"; - private static final String EXPORT_FILE = "testExport.txt"; - private static final String H5_REGION_FILE = "trefer_reg.h5"; + @Rule + public TestName testname = new TestName(); + private static final String H5_FILE = "testData.h5"; + private static final String EXPORT_FILE = "testExport.txt"; + private static final String H5_REGION_FILE = "trefer_reg.h5"; private static final String EXPORT_REGION_FILE = "testExportReg.txt"; - private static final String H5_ATTR_FILE = "trefer_attr.h5"; - private static final String EXPORT_ATTR_FILE = "testExportAttr.txt"; - private static final String H5_DREG_FILE = "tdatareg.h5"; - private static final String EXPORT_DREG_FILE = "testExportDReg.txt"; - private static final String H5_AREG_FILE = "tattrreg.h5"; - private static final String EXPORT_AREG_FILE = "testExportAReg.txt"; - private static final int DIM_X = 4; - private static final int DIM_Y = 6; - private static final int DIM_BLKS = 36; - private static final int DIM_PNTS = 10; - private static final int DIM_ATTR = 12; - private static final int RANK = 2; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - long[] H5dims = { DIM_X, DIM_Y }; - - private final void _deleteFile(String filename) { + private static final String H5_ATTR_FILE = "trefer_attr.h5"; + private static final String EXPORT_ATTR_FILE = "testExportAttr.txt"; + private static final String H5_DREG_FILE = "tdatareg.h5"; + private static final String EXPORT_DREG_FILE = "testExportDReg.txt"; + private static final String H5_AREG_FILE = "tattrreg.h5"; + private static final String EXPORT_AREG_FILE = "testExportAReg.txt"; + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + private static final int DIM_BLKS = 36; + private static final int DIM_PNTS = 10; + private static final int DIM_ATTR = 12; + private static final int RANK = 2; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + long[] H5dims = {DIM_X, DIM_Y}; + + private final void _deleteFile(String filename) + { File file = null; try { file = new File(filename); } - catch (Throwable err) {} + catch (Throwable err) { + } if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } - private final long _createDataset(long fid, long dsid, String name, long dapl) { + private final long _createDataset(long fid, long dsid, String name, long dapl) + { long did = HDF5Constants.H5I_INVALID_HID; try { - did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32LE, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32LE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -95,12 +103,13 @@ public class TestH5 { return did; } - private final void _createH5File() { + private final void _createH5File() + { try { - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5dsid = H5.H5Screate_simple(2, H5dims, null); - H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); + H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -118,62 +127,77 @@ public class TestH5 { } } - private final void _closeH5File() { + private final void _closeH5File() + { if (H5did >= 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} - H5fid = HDF5Constants.H5I_INVALID_HID; + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } + H5fid = HDF5Constants.H5I_INVALID_HID; H5dsid = HDF5Constants.H5I_INVALID_HID; - H5did = HDF5Constants.H5I_INVALID_HID; + H5did = HDF5Constants.H5I_INVALID_HID; } - public void _openH5File(String filename, String dsetname) { - try { - H5fid = H5.H5Fopen(filename, - HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5._openH5file: " + err); - } - assertTrue("TestH5._openH5file: H5.H5Fopen: ", H5fid >= 0); - try { - H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5._openH5file: " + err); - } - assertTrue("TestH5._openH5file: H5.H5Dopen: ", H5did >= 0); - try { - H5dsid = H5.H5Dget_space(H5did); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5._openH5file: " + err); - } - assertTrue("TestH5._openH5file: H5.H5Screate_simple: ",H5dsid > 0); + public void _openH5File(String filename, String dsetname) + { + try { + H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5._openH5file: " + err); + } + assertTrue("TestH5._openH5file: H5.H5Fopen: ", H5fid >= 0); + try { + H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5._openH5file: " + err); + } + assertTrue("TestH5._openH5file: H5.H5Dopen: ", H5did >= 0); + try { + H5dsid = H5.H5Dget_space(H5did); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5._openH5file: " + err); + } + assertTrue("TestH5._openH5file: H5.H5Screate_simple: ", H5dsid > 0); } - public final void _deleteH5file() { + public final void _deleteH5file() + { _closeH5File(); _deleteFile(H5_FILE); } @After - public void closeH5File() throws HDF5LibraryException { + public void closeH5File() throws HDF5LibraryException + { _closeH5File(); - assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0); + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.println(); } @Before - public void verifyCount() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0); + public void verifyCount() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @@ -184,33 +208,30 @@ public class TestH5 { * being retained hdf java does not access the symbol. */ @Test - public void testJ2C() { - int H5F_ACC_RDONLY = 0x0000; - int H5F_ACC_RDWR = 0x0001; - int H5F_ACC_TRUNC = 0x0002; - int H5F_ACC_EXCL = 0x0004; - int H5F_ACC_CREAT = 0x0010; - int H5F_OBJ_FILE = 0x0001; - int H5F_OBJ_DATASET = 0x0002; - int H5F_OBJ_GROUP = 0x0004; + public void testJ2C() + { + int H5F_ACC_RDONLY = 0x0000; + int H5F_ACC_RDWR = 0x0001; + int H5F_ACC_TRUNC = 0x0002; + int H5F_ACC_EXCL = 0x0004; + int H5F_ACC_CREAT = 0x0010; + int H5F_OBJ_FILE = 0x0001; + int H5F_OBJ_DATASET = 0x0002; + int H5F_OBJ_GROUP = 0x0004; int H5F_OBJ_DATATYPE = 0x0008; - int H5F_OBJ_ATTR = 0x0010; - int H5F_OBJ_ALL = H5F_OBJ_FILE | H5F_OBJ_DATASET | H5F_OBJ_GROUP - | H5F_OBJ_DATATYPE | H5F_OBJ_ATTR; + int H5F_OBJ_ATTR = 0x0010; + int H5F_OBJ_ALL = H5F_OBJ_FILE | H5F_OBJ_DATASET | H5F_OBJ_GROUP | H5F_OBJ_DATATYPE | H5F_OBJ_ATTR; int H5F_OBJ_LOCAL = 0x0020; - int definedValues[] = { H5F_ACC_RDONLY, H5F_ACC_RDWR, H5F_ACC_TRUNC, - H5F_ACC_EXCL, H5F_ACC_CREAT, H5F_OBJ_FILE, - H5F_OBJ_DATASET, H5F_OBJ_GROUP, H5F_OBJ_DATATYPE, H5F_OBJ_ATTR, - H5F_OBJ_ALL, H5F_OBJ_LOCAL }; + int definedValues[] = {H5F_ACC_RDONLY, H5F_ACC_RDWR, H5F_ACC_TRUNC, H5F_ACC_EXCL, + H5F_ACC_CREAT, H5F_OBJ_FILE, H5F_OBJ_DATASET, H5F_OBJ_GROUP, + H5F_OBJ_DATATYPE, H5F_OBJ_ATTR, H5F_OBJ_ALL, H5F_OBJ_LOCAL}; - int j2cValues[] = { HDF5Constants.H5F_ACC_RDONLY, - HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5F_ACC_EXCL, - HDF5Constants.H5F_ACC_CREAT, HDF5Constants.H5F_OBJ_FILE, - HDF5Constants.H5F_OBJ_DATASET, HDF5Constants.H5F_OBJ_GROUP, - HDF5Constants.H5F_OBJ_DATATYPE, HDF5Constants.H5F_OBJ_ATTR, - HDF5Constants.H5F_OBJ_ALL, HDF5Constants.H5F_OBJ_LOCAL }; + int j2cValues[] = { + HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5F_ACC_TRUNC, + HDF5Constants.H5F_ACC_EXCL, HDF5Constants.H5F_ACC_CREAT, HDF5Constants.H5F_OBJ_FILE, + HDF5Constants.H5F_OBJ_DATASET, HDF5Constants.H5F_OBJ_GROUP, HDF5Constants.H5F_OBJ_DATATYPE, + HDF5Constants.H5F_OBJ_ATTR, HDF5Constants.H5F_OBJ_ALL, HDF5Constants.H5F_OBJ_LOCAL}; for (int i = 0; i < definedValues.length; i++) { assertEquals(definedValues[i], j2cValues[i]); @@ -224,7 +245,8 @@ public class TestH5 { * Test method for {@link hdf.hdf5lib.H5#H5error_off()}. */ @Test - public void testH5error_off() { + public void testH5error_off() + { try { H5.H5error_off(); } @@ -237,7 +259,8 @@ public class TestH5 { * Test method for {@link hdf.hdf5lib.H5#H5open()}. */ @Test - public void testH5open() { + public void testH5open() + { try { H5.H5open(); } @@ -250,7 +273,8 @@ public class TestH5 { * Test method for {@link hdf.hdf5lib.H5#H5garbage_collect()}. */ @Test - public void testH5garbage_collect() { + public void testH5garbage_collect() + { try { H5.H5garbage_collect(); } @@ -265,17 +289,18 @@ public class TestH5 { * . */ @Test - public void testH5set_free_list_limits() { + public void testH5set_free_list_limits() + { int reg_global_lim = 1; - int reg_list_lim = 1; + int reg_list_lim = 1; int arr_global_lim = 1; - int arr_list_lim = 1; + int arr_list_lim = 1; int blk_global_lim = 1; - int blk_list_lim = 1; + int blk_list_lim = 1; try { - H5.H5set_free_list_limits(reg_global_lim, reg_list_lim, - arr_global_lim, arr_list_lim, blk_global_lim, blk_list_lim); + H5.H5set_free_list_limits(reg_global_lim, reg_list_lim, arr_global_lim, arr_list_lim, + blk_global_lim, blk_list_lim); } catch (Throwable err) { fail("H5.H5set_free_list_limits failed: " + err); @@ -286,8 +311,9 @@ public class TestH5 { * Test method for {@link hdf.hdf5lib.H5#H5get_libversion(int[])}. */ @Test - public void testH5get_libversion() { - int libversion[] = { 1, 12, 3 }; + public void testH5get_libversion() + { + int libversion[] = {1, 12, 3}; try { H5.H5get_libversion(libversion); @@ -309,7 +335,8 @@ public class TestH5 { * fail. */ @Test - public void testH5get_libversion_null_param() { + public void testH5get_libversion_null_param() + { try { H5.H5get_libversion(null); } @@ -325,7 +352,8 @@ public class TestH5 { * {@link hdf.hdf5lib.H5#H5check_version(int, int, int)}. */ @Test - public void testH5check_version() { + public void testH5check_version() + { int majnum = 1, minnum = 12, relnum = 3; try { @@ -344,8 +372,9 @@ public class TestH5 { } @Test - public void testIsSerializable() { - H5 test = new H5(); + public void testIsSerializable() + { + H5 test = new H5(); ByteArrayOutputStream out = new ByteArrayOutputStream(); ObjectOutputStream oos; try { @@ -358,7 +387,6 @@ public class TestH5 { fail("ObjectOutputStream failed: " + err); } assertTrue(out.toByteArray().length > 0); - } @SuppressWarnings("static-access") @@ -368,7 +396,7 @@ public class TestH5 { try { H5 test = new H5(); - FileOutputStream fos = new FileOutputStream("temph5.ser"); + FileOutputStream fos = new FileOutputStream("temph5.ser"); ObjectOutputStream oos = new ObjectOutputStream(fos); oos.writeObject(test); oos.close(); @@ -378,14 +406,14 @@ public class TestH5 { } try { - FileInputStream fis = new FileInputStream("temph5.ser"); + FileInputStream fis = new FileInputStream("temph5.ser"); ObjectInputStream ois = new ObjectInputStream(fis); - H5 test = (hdf.hdf5lib.H5) ois.readObject(); + H5 test = (hdf.hdf5lib.H5)ois.readObject(); ois.close(); - assertTrue("H5.LIB_VERSION[0]", test.LIB_VERSION[0]==H5.LIB_VERSION[0]); - assertTrue("H5.LIB_VERSION[1]", test.LIB_VERSION[1]==H5.LIB_VERSION[1]); -// assertTrue("H5.LIB_VERSION[2]", test.LIB_VERSION[2]==H5.LIB_VERSION[2]); + assertTrue("H5.LIB_VERSION[0]", test.LIB_VERSION[0] == H5.LIB_VERSION[0]); + assertTrue("H5.LIB_VERSION[1]", test.LIB_VERSION[1] == H5.LIB_VERSION[1]); + // assertTrue("H5.LIB_VERSION[2]", test.LIB_VERSION[2]==H5.LIB_VERSION[2]); // Clean up the file new File("temph5.ser").delete(); @@ -396,10 +424,11 @@ public class TestH5 { } @Test - public void testH5export_dataset() { - int[][] dset_data = new int[DIM_X][DIM_Y]; + public void testH5export_dataset() + { + int[][] dset_data = new int[DIM_X][DIM_Y]; int[][] dset_indata = new int[DIM_X][DIM_Y]; - int FILLVAL = 99; + int FILLVAL = 99; _createH5File(); @@ -410,9 +439,8 @@ public class TestH5 { try { if (H5did >= 0) - H5.H5Dwrite(H5did, HDF5Constants.H5T_STD_I32LE, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + H5.H5Dwrite(H5did, HDF5Constants.H5T_STD_I32LE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, dset_data); } catch (Exception e) { e.printStackTrace(); @@ -433,12 +461,12 @@ public class TestH5 { File file = new File(EXPORT_FILE); try { - Reader reader = new FileReader(EXPORT_FILE); + Reader reader = new FileReader(EXPORT_FILE); StreamTokenizer streamTokenizer = new StreamTokenizer(reader); - int indx = 0; - int jndx = 0; - while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){ - if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) { + int indx = 0; + int jndx = 0; + while (streamTokenizer.nextToken() != StreamTokenizer.TT_EOF) { + if (streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) { dset_indata[indx][jndx] = (int)streamTokenizer.nval; jndx++; if (jndx >= DIM_Y) { @@ -453,21 +481,23 @@ public class TestH5 { err.printStackTrace(); fail("read file failed: " + err); } - for(int row = 0; row < DIM_X; row++) - for(int col = 0; col < DIM_Y; col++) { - assertTrue("H5export_dataset: <"+row+","+col+">"+dset_indata[row][col]+"=99", dset_indata[row][col]==99); + for (int row = 0; row < DIM_X; row++) + for (int col = 0; col < DIM_Y; col++) { + assertTrue("H5export_dataset: <" + row + "," + col + ">" + dset_indata[row][col] + "=99", + dset_indata[row][col] == 99); } _deleteH5file(); } @Test - public void testH5export_region() { - int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108, - 111, 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171, - 186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231, - 207, 66, 252, 48, 84, 96, 12, 14, 213, 99}; - int[] dset_indata = new int[DIM_BLKS+DIM_PNTS]; - String objName = "/Dataset1"; + public void testH5export_region() + { + int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108, 111, + 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171, + 186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231, + 207, 66, 252, 48, 84, 96, 12, 14, 213, 99}; + int[] dset_indata = new int[DIM_BLKS + DIM_PNTS]; + String objName = "/Dataset1"; _openH5File(H5_REGION_FILE, objName); @@ -482,11 +512,11 @@ public class TestH5 { File file = new File(EXPORT_REGION_FILE); try { - Reader reader = new FileReader(EXPORT_REGION_FILE); + Reader reader = new FileReader(EXPORT_REGION_FILE); StreamTokenizer streamTokenizer = new StreamTokenizer(reader); - int indx = 0; - while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){ - if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) { + int indx = 0; + while (streamTokenizer.nextToken() != StreamTokenizer.TT_EOF) { + if (streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) { dset_indata[indx] = (int)streamTokenizer.nval; indx++; } @@ -497,15 +527,17 @@ public class TestH5 { err.printStackTrace(); fail("read file failed: " + err); } - for(int row = 0; row < DIM_X; row++) - assertTrue("testH5export_region: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]); + for (int row = 0; row < DIM_X; row++) + assertTrue("testH5export_region: <" + row + ">" + dset_indata[row], + dset_indata[row] == dset_data_expect[row]); } @Test - public void testH5export_attribute() { + public void testH5export_attribute() + { int[] dset_data_expect = {0, 3, 6, 9, 1, 4, 7, 10, 2, 5, 8, 11}; - int[] dset_indata = new int[DIM_ATTR]; - String objName = "/Dataset3"; + int[] dset_indata = new int[DIM_ATTR]; + String objName = "/Dataset3"; _openH5File(H5_ATTR_FILE, objName); @@ -520,12 +552,12 @@ public class TestH5 { File file = new File(EXPORT_ATTR_FILE); try { - Reader reader = new FileReader(EXPORT_ATTR_FILE); + Reader reader = new FileReader(EXPORT_ATTR_FILE); StreamTokenizer streamTokenizer = new StreamTokenizer(reader); - int indx = 0; - int jndx = 0; - while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){ - if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) { + int indx = 0; + int jndx = 0; + while (streamTokenizer.nextToken() != StreamTokenizer.TT_EOF) { + if (streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) { dset_indata[indx] = (int)streamTokenizer.nval; indx++; } @@ -536,18 +568,20 @@ public class TestH5 { err.printStackTrace(); fail("read file failed: " + err); } - for(int row = 0; row < DIM_X; row++) - assertTrue("testH5export_attribute: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]); + for (int row = 0; row < DIM_X; row++) + assertTrue("testH5export_attribute: <" + row + ">" + dset_indata[row], + dset_indata[row] == dset_data_expect[row]); } @Test - public void testH5export_regdataset() { - int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108, - 111, 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171, - 186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231, - 207, 66, 252, 48, 84, 96, 12, 14, 213, 99}; - int[] dset_indata = new int[DIM_BLKS+DIM_PNTS]; - String objName = "/Dataset1"; + public void testH5export_regdataset() + { + int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108, 111, + 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171, + 186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231, + 207, 66, 252, 48, 84, 96, 12, 14, 213, 99}; + int[] dset_indata = new int[DIM_BLKS + DIM_PNTS]; + String objName = "/Dataset1"; _openH5File(H5_DREG_FILE, objName); @@ -562,11 +596,11 @@ public class TestH5 { File file = new File(EXPORT_DREG_FILE); try { - Reader reader = new FileReader(EXPORT_DREG_FILE); + Reader reader = new FileReader(EXPORT_DREG_FILE); StreamTokenizer streamTokenizer = new StreamTokenizer(reader); - int indx = 0; - while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){ - if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) { + int indx = 0; + while (streamTokenizer.nextToken() != StreamTokenizer.TT_EOF) { + if (streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) { dset_indata[indx] = (int)streamTokenizer.nval; indx++; } @@ -577,19 +611,21 @@ public class TestH5 { err.printStackTrace(); fail("read file failed: " + err); } - for(int row = 0; row < DIM_X; row++) - assertTrue("testH5export_regdataset: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]); + for (int row = 0; row < DIM_X; row++) + assertTrue("testH5export_regdataset: <" + row + ">" + dset_indata[row], + dset_indata[row] == dset_data_expect[row]); } @Test - public void testH5export_attrdataset() { - int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108, - 111, 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171, - 186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231, - 207, 66, 252, 48, 84, 96, 12, 14, 213, 99}; - int[] dset_indata = new int[DIM_BLKS+DIM_PNTS]; - String dsetName = "/Dataset1"; - String objName = "Attribute1"; + public void testH5export_attrdataset() + { + int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108, 111, + 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171, + 186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231, + 207, 66, 252, 48, 84, 96, 12, 14, 213, 99}; + int[] dset_indata = new int[DIM_BLKS + DIM_PNTS]; + String dsetName = "/Dataset1"; + String objName = "Attribute1"; _openH5File(H5_AREG_FILE, dsetName); @@ -604,12 +640,12 @@ public class TestH5 { File file = new File(EXPORT_AREG_FILE); try { - Reader reader = new FileReader(EXPORT_AREG_FILE); + Reader reader = new FileReader(EXPORT_AREG_FILE); StreamTokenizer streamTokenizer = new StreamTokenizer(reader); - int indx = 0; - int jndx = 0; - while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){ - if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) { + int indx = 0; + int jndx = 0; + while (streamTokenizer.nextToken() != StreamTokenizer.TT_EOF) { + if (streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) { dset_indata[indx] = (int)streamTokenizer.nval; indx++; } @@ -620,7 +656,8 @@ public class TestH5 { err.printStackTrace(); fail("read file failed: " + err); } - for(int row = 0; row < DIM_X; row++) - assertTrue("testH5export_attrdataset: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]); + for (int row = 0; row < DIM_X; row++) + assertTrue("testH5export_attrdataset: <" + row + ">" + dset_indata[row], + dset_indata[row] == dset_data_expect[row]); } } diff --git a/java/test/TestH5A.java b/java/test/TestH5A.java index f2134d2..fed13ce 100644 --- a/java/test/TestH5A.java +++ b/java/test/TestH5A.java @@ -18,9 +18,8 @@ import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; -import java.util.ArrayList; - import java.io.File; +import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; @@ -38,32 +37,39 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5A { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "testA.h5"; - private static final int DIM_X = 4; - private static final int DIM_Y = 6; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - long[] H5dims = { DIM_X, DIM_Y }; - long type_id = HDF5Constants.H5I_INVALID_HID; - long space_id = HDF5Constants.H5I_INVALID_HID; - long lapl_id = HDF5Constants.H5I_INVALID_HID; - long aapl_id = HDF5Constants.H5I_INVALID_HID; - - private final void _deleteFile(String filename) { + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + long[] H5dims = {DIM_X, DIM_Y}; + long type_id = HDF5Constants.H5I_INVALID_HID; + long space_id = HDF5Constants.H5I_INVALID_HID; + long lapl_id = HDF5Constants.H5I_INVALID_HID; + long aapl_id = HDF5Constants.H5I_INVALID_HID; + + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } - private final long _createDataset(long fid, long dsid, String name, long dapl) { + private final long _createDataset(long fid, long dsid, String name, long dapl) + { long did = HDF5Constants.H5I_INVALID_HID; try { - did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -75,18 +81,18 @@ public class TestH5A { } @Before - public void createH5file() throws NullPointerException, HDF5Exception { + public void createH5file() throws NullPointerException, HDF5Exception + { assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); assertTrue("TestH5A.createH5file: H5.H5Fcreate: ", H5fid > 0); H5dsid = H5.H5Screate_simple(2, H5dims, null); assertTrue("TestH5A.createH5file: H5.H5Screate_simple: ", H5dsid > 0); - H5did = _createDataset(H5fid, H5dsid, "dset", - HDF5Constants.H5P_DEFAULT); + H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); assertTrue("TestH5A.createH5file: _createDataset: ", H5did > 0); space_id = H5.H5Screate(HDF5Constants.H5S_NULL); assertTrue(space_id > 0); @@ -108,32 +114,63 @@ public class TestH5A { } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } _deleteFile(H5_FILE); if (type_id > 0) - try {H5.H5Tclose(type_id);} catch (Exception ex) {} + try { + H5.H5Tclose(type_id); + } + catch (Exception ex) { + } if (space_id > 0) - try {H5.H5Sclose(space_id);} catch (Exception ex) {} + try { + H5.H5Sclose(space_id); + } + catch (Exception ex) { + } if (lapl_id > 0) - try {H5.H5Pclose(lapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(lapl_id); + } + catch (Exception ex) { + } if (aapl_id > 0) - try {H5.H5Pclose(aapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(aapl_id); + } + catch (Exception ex) { + } System.out.println(); } @Test - public void testH5Acreate2() { + public void testH5Acreate2() + { long attr_id = HDF5Constants.H5I_INVALID_HID; try { - attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); assertTrue("testH5Acreate2", attr_id >= 0); } catch (Throwable err) { @@ -142,34 +179,40 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } } } @Test(expected = HDF5LibraryException.class) - public void testH5Acreate2_invalidobject() throws Throwable { + public void testH5Acreate2_invalidobject() throws Throwable + { H5.H5Acreate(H5dsid, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } @Test(expected = NullPointerException.class) - public void testH5Acreate2_nullname() throws Throwable { + public void testH5Acreate2_nullname() throws Throwable + { H5.H5Acreate(H5did, null, type_id, space_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Aopen() { - String attr_name = "dset"; + public void testH5Aopen() + { + String attr_name = "dset"; long attribute_id = HDF5Constants.H5I_INVALID_HID; - long attr_id = HDF5Constants.H5I_INVALID_HID; + long attr_id = HDF5Constants.H5I_INVALID_HID; try { - attr_id = H5.H5Acreate(H5did, attr_name, type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + attr_id = H5.H5Acreate(H5did, attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); // Opening the existing attribute, attr_name(Created by H5ACreate2) // attached to an object identifier. - attribute_id = H5.H5Aopen(H5did, attr_name, - HDF5Constants.H5P_DEFAULT); + attribute_id = H5.H5Aopen(H5did, attr_name, HDF5Constants.H5P_DEFAULT); assertTrue("testH5Aopen: H5Aopen", attribute_id >= 0); } catch (Throwable err) { @@ -178,35 +221,45 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } if (attribute_id > 0) - try {H5.H5Aclose(attribute_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attribute_id); + } + catch (Exception ex) { + } } } @Test(expected = HDF5LibraryException.class) - public void testH5Aopen_invalidname() throws Throwable { + public void testH5Aopen_invalidname() throws Throwable + { H5.H5Aopen(H5did, "attr_name", HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Aopen_by_idx() { - long loc_id = H5did; - String obj_name = "."; - int idx_type = HDF5Constants.H5_INDEX_CRT_ORDER; - int order = HDF5Constants.H5_ITER_INC; - long n = 0; - long attr_id = HDF5Constants.H5I_INVALID_HID; + public void testH5Aopen_by_idx() + { + long loc_id = H5did; + String obj_name = "."; + int idx_type = HDF5Constants.H5_INDEX_CRT_ORDER; + int order = HDF5Constants.H5_ITER_INC; + long n = 0; + long attr_id = HDF5Constants.H5I_INVALID_HID; long attribute_id = HDF5Constants.H5I_INVALID_HID; try { - attr_id = H5.H5Acreate(H5did, "file", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + attr_id = H5.H5Acreate(H5did, "file", type_id, space_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); // Opening the existing attribute, obj_name(Created by H5ACreate2) // by index, attached to an object identifier. - attribute_id = H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, - 0, aapl_id, lapl_id); + attribute_id = H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 0, aapl_id, lapl_id); assertTrue("testH5Aopen_by_idx: H5Aopen_by_idx", attribute_id >= 0); @@ -215,29 +268,29 @@ public class TestH5A { // with n=5 and we do not have 5 attributes created. try { n = 5; - H5.H5Aopen_by_idx(loc_id, obj_name, idx_type, order, n, - aapl_id, lapl_id); + H5.H5Aopen_by_idx(loc_id, obj_name, idx_type, order, n, aapl_id, lapl_id); fail("Negative Test Failed:- Error not Thrown when n is invalid."); } catch (AssertionError err) { fail("H5.H5Aopen_by_idx: " + err); } - catch (HDF5LibraryException err) {} + catch (HDF5LibraryException err) { + } // Negative test- Error should be thrown when H5Aopen_by_idx is // called // with an invalid object name(which hasn't been created). try { - n = 0; + n = 0; obj_name = "file"; - H5.H5Aopen_by_idx(loc_id, obj_name, idx_type, order, n, - aapl_id, lapl_id); + H5.H5Aopen_by_idx(loc_id, obj_name, idx_type, order, n, aapl_id, lapl_id); fail("Negative Test Failed:- Error not Thrown when attribute name is invalid."); } catch (AssertionError err) { fail("H5.H5Aopen_by_idx: " + err); } - catch (HDF5LibraryException err) {} + catch (HDF5LibraryException err) { + } } catch (Throwable err) { err.printStackTrace(); @@ -245,32 +298,37 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } if (attribute_id > 0) - try {H5.H5Aclose(attribute_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attribute_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Acreate_by_name() { - String obj_name = "."; - String attr_name = "DATASET"; + public void testH5Acreate_by_name() + { + String obj_name = "."; + String attr_name = "DATASET"; long attribute_id = HDF5Constants.H5I_INVALID_HID; - boolean bool_val = false; + boolean bool_val = false; try { - attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, - type_id, space_id, HDF5Constants.H5P_DEFAULT, - aapl_id, lapl_id); - assertTrue("testH5Acreate_by_name: H5Acreate_by_name", - attribute_id >= 0); + attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id, + HDF5Constants.H5P_DEFAULT, aapl_id, lapl_id); + assertTrue("testH5Acreate_by_name: H5Acreate_by_name", attribute_id >= 0); // Check if the name of attribute attached to the object specified // by loc_id and obj_name exists.It should be true. - bool_val = H5.H5Aexists_by_name(H5fid, obj_name, attr_name, - lapl_id); - assertTrue("testH5Acreate_by_name: H5Aexists_by_name", - bool_val == true); + bool_val = H5.H5Aexists_by_name(H5fid, obj_name, attr_name, lapl_id); + assertTrue("testH5Acreate_by_name: H5Aexists_by_name", bool_val == true); } catch (Throwable err) { err.printStackTrace(); @@ -278,21 +336,27 @@ public class TestH5A { } finally { if (attribute_id > 0) - try {H5.H5Aclose(attribute_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attribute_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Arename() throws Throwable, HDF5LibraryException, NullPointerException { - long loc_id = H5fid; + public void testH5Arename() throws Throwable, HDF5LibraryException, NullPointerException + { + long loc_id = H5fid; String old_attr_name = "old"; String new_attr_name = "new"; - long attr_id = HDF5Constants.H5I_INVALID_HID; - int ret_val = -1; - boolean bool_val = false; + long attr_id = HDF5Constants.H5I_INVALID_HID; + int ret_val = -1; + boolean bool_val = false; try { - attr_id = H5.H5Acreate(loc_id, old_attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT, aapl_id); + attr_id = + H5.H5Acreate(loc_id, old_attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT, aapl_id); ret_val = H5.H5Arename(loc_id, old_attr_name, new_attr_name); @@ -315,41 +379,42 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Arename_by_name() { - long loc_id = H5fid; - String obj_name = "."; + public void testH5Arename_by_name() + { + long loc_id = H5fid; + String obj_name = "."; String old_attr_name = "old"; String new_attr_name = "new"; - long attr_id = HDF5Constants.H5I_INVALID_HID; - int ret_val = -1; - boolean bool_val = false; + long attr_id = HDF5Constants.H5I_INVALID_HID; + int ret_val = -1; + boolean bool_val = false; try { - attr_id = H5.H5Acreate_by_name(loc_id, obj_name, old_attr_name, - type_id, space_id, HDF5Constants.H5P_DEFAULT, aapl_id, lapl_id); + attr_id = H5.H5Acreate_by_name(loc_id, obj_name, old_attr_name, type_id, space_id, + HDF5Constants.H5P_DEFAULT, aapl_id, lapl_id); - ret_val = H5.H5Arename_by_name(loc_id, obj_name, old_attr_name, - new_attr_name, lapl_id); + ret_val = H5.H5Arename_by_name(loc_id, obj_name, old_attr_name, new_attr_name, lapl_id); // Check the return value.It should be non negative. assertTrue("testH5Arename_by_name: H5Arename_by_name", ret_val >= 0); // Check if the new name of attribute attached to the object // specified by loc_id and obj_name exists.It should be true. - bool_val = H5.H5Aexists_by_name(loc_id, obj_name, new_attr_name, - lapl_id); - assertTrue("testH5Arename_by_name: H5Aexists_by_name", - bool_val == true); + bool_val = H5.H5Aexists_by_name(loc_id, obj_name, new_attr_name, lapl_id); + assertTrue("testH5Arename_by_name: H5Aexists_by_name", bool_val == true); // Check if the old name of attribute attached to the object // specified by loc_id and obj_name exists. It should equal false. - bool_val = H5.H5Aexists_by_name(loc_id, obj_name, old_attr_name, - lapl_id); + bool_val = H5.H5Aexists_by_name(loc_id, obj_name, old_attr_name, lapl_id); assertEquals(bool_val, false); } catch (Throwable err) { @@ -358,21 +423,25 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Aget_name() { - String obj_name = "."; - String attr_name = "DATASET1"; - String ret_name = null; + public void testH5Aget_name() + { + String obj_name = "."; + String attr_name = "DATASET1"; + String ret_name = null; long attribute_id = HDF5Constants.H5I_INVALID_HID; try { - attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, - type_id, space_id, HDF5Constants.H5P_DEFAULT, - aapl_id, lapl_id); + attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id, + HDF5Constants.H5P_DEFAULT, aapl_id, lapl_id); assertTrue("testH5Aget_name: H5Acreate_by_name ", attribute_id > 0); ret_name = H5.H5Aget_name(attribute_id); assertEquals(ret_name, attr_name); @@ -383,40 +452,40 @@ public class TestH5A { } finally { if (attribute_id > 0) - try {H5.H5Aclose(attribute_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attribute_id); + } + catch (Exception ex) { + } } } - @Test - public void testH5Aget_name_by_idx() { - long loc_id = H5fid; - String obj_name = "."; + public void testH5Aget_name_by_idx() + { + long loc_id = H5fid; + String obj_name = "."; String attr_name = "DATASET1", attr2_name = "DATASET2"; String ret_name = null; - int idx_type = HDF5Constants.H5_INDEX_NAME; - int order = HDF5Constants.H5_ITER_INC; - int n = 0; - long attr1_id = HDF5Constants.H5I_INVALID_HID; - long attr2_id = HDF5Constants.H5I_INVALID_HID; + int idx_type = HDF5Constants.H5_INDEX_NAME; + int order = HDF5Constants.H5_ITER_INC; + int n = 0; + long attr1_id = HDF5Constants.H5I_INVALID_HID; + long attr2_id = HDF5Constants.H5I_INVALID_HID; try { - attr1_id = H5.H5Acreate_by_name(loc_id, obj_name, attr_name, - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr2_id = H5.H5Acreate_by_name(loc_id, obj_name, attr2_name, - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); + attr1_id = H5.H5Acreate_by_name(loc_id, obj_name, attr_name, type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr2_id = H5.H5Acreate_by_name(loc_id, obj_name, attr2_name, type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); // getting the 1st attribute name(n=0). - ret_name = H5.H5Aget_name_by_idx(loc_id, obj_name, idx_type, order, - n, lapl_id); + ret_name = H5.H5Aget_name_by_idx(loc_id, obj_name, idx_type, order, n, lapl_id); assertFalse("H5Aget_name_by_idx ", ret_name == null); assertEquals(ret_name, attr_name); // getting the second attribute name(n=1) - ret_name = H5.H5Aget_name_by_idx(loc_id, obj_name, idx_type, order, - 1, lapl_id); + ret_name = H5.H5Aget_name_by_idx(loc_id, obj_name, idx_type, order, 1, lapl_id); assertFalse("H5Aget_name_by_idx ", ret_name == null); assertEquals(ret_name, attr2_name); } @@ -426,20 +495,29 @@ public class TestH5A { } finally { if (attr1_id > 0) - try {H5.H5Aclose(attr1_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr1_id); + } + catch (Exception ex) { + } if (attr2_id > 0) - try {H5.H5Aclose(attr2_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr2_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Aget_storage_size() { - long attr_id = HDF5Constants.H5I_INVALID_HID; + public void testH5Aget_storage_size() + { + long attr_id = HDF5Constants.H5I_INVALID_HID; long attr_size = HDF5Constants.H5I_INVALID_HID; try { - attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); attr_size = H5.H5Aget_storage_size(attr_id); assertTrue("The size of attribute is :", attr_size == 0); @@ -450,27 +528,31 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Aget_info() { + public void testH5Aget_info() + { H5A_info_t attr_info = null; - long attribute_id = HDF5Constants.H5I_INVALID_HID; - long attr_id = HDF5Constants.H5I_INVALID_HID; + long attribute_id = HDF5Constants.H5I_INVALID_HID; + long attr_id = HDF5Constants.H5I_INVALID_HID; try { - attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); attribute_id = H5.H5Aopen(H5did, "dset", HDF5Constants.H5P_DEFAULT); // Calling H5Aget_info with attribute_id returned from H5Aopen. attr_info = H5.H5Aget_info(attribute_id); assertFalse("H5Aget_info ", attr_info == null); - assertTrue("Corder_Valid should be false", - attr_info.corder_valid == false); + assertTrue("Corder_Valid should be false", attr_info.corder_valid == false); assertTrue("Character set used for attribute name", - attr_info.cset == HDF5Constants.H5T_CSET_ASCII); + attr_info.cset == HDF5Constants.H5T_CSET_ASCII); assertTrue("Corder ", attr_info.corder == 0); assertEquals(attr_info.data_size, H5.H5Aget_storage_size(attr_id)); } @@ -480,34 +562,40 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } if (attribute_id > 0) - try {H5.H5Aclose(attribute_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attribute_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Aget_info1() { + public void testH5Aget_info1() + { H5A_info_t attr_info = null; - long attribute_id = HDF5Constants.H5I_INVALID_HID; - long attr_id = HDF5Constants.H5I_INVALID_HID; - int order = HDF5Constants.H5_ITER_INC; + long attribute_id = HDF5Constants.H5I_INVALID_HID; + long attr_id = HDF5Constants.H5I_INVALID_HID; + int order = HDF5Constants.H5_ITER_INC; try { - attr_id = H5.H5Acreate(H5did, ".", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - attribute_id = H5.H5Aopen_by_idx(H5did, ".", - HDF5Constants.H5_INDEX_CRT_ORDER, order, 0, - HDF5Constants.H5P_DEFAULT, lapl_id); + attr_id = H5.H5Acreate(H5did, ".", type_id, space_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + attribute_id = H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, order, 0, + HDF5Constants.H5P_DEFAULT, lapl_id); // Calling H5Aget_info with attribute_id returned from // H5Aopen_by_idx. attr_info = H5.H5Aget_info(attribute_id); assertFalse("H5Aget_info ", attr_info == null); - assertTrue("Corder_Valid should be true", - attr_info.corder_valid == true); - assertTrue("Character set", - attr_info.cset == HDF5Constants.H5T_CSET_ASCII); + assertTrue("Corder_Valid should be true", attr_info.corder_valid == true); + assertTrue("Character set", attr_info.cset == HDF5Constants.H5T_CSET_ASCII); assertTrue("Corder ", attr_info.corder == 0); assertEquals(attr_info.data_size, H5.H5Aget_storage_size(attr_id)); } @@ -517,55 +605,81 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } if (attribute_id > 0) - try {H5.H5Aclose(attribute_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attribute_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Aget_info_by_idx() { - long attr_id = HDF5Constants.H5I_INVALID_HID; - long attr2_id = HDF5Constants.H5I_INVALID_HID;; + public void testH5Aget_info_by_idx() + { + long attr_id = HDF5Constants.H5I_INVALID_HID; + long attr2_id = HDF5Constants.H5I_INVALID_HID; + ; H5A_info_t attr_info = null; try { - attr_id = H5.H5Acreate(H5did, "dset1", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - attr2_id = H5.H5Acreate(H5did, "dataset2", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - - //Verify info for 1st attribute, in increasing creation order - attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, lapl_id); + attr_id = H5.H5Acreate(H5did, "dset1", type_id, space_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + attr2_id = H5.H5Acreate(H5did, "dataset2", type_id, space_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + + // Verify info for 1st attribute, in increasing creation order + attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 0, lapl_id); assertNotNull(attr_info); - assertTrue("Corder ", attr_info.corder == 0);//should equal 0 as this is the order of 1st attribute created. + assertTrue("Corder ", + attr_info.corder == + 0); // should equal 0 as this is the order of 1st attribute created. assertEquals(attr_info.data_size, H5.H5Aget_storage_size(attr_id)); - //Verify info for 2nd attribute, in increasing creation order - attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 1, lapl_id); + // Verify info for 2nd attribute, in increasing creation order + attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 1, lapl_id); assertNotNull(attr_info); assertTrue("Corder", attr_info.corder == 1); assertEquals(attr_info.data_size, H5.H5Aget_storage_size(attr2_id)); - //verify info for 2nd attribute, in decreasing creation order - attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_DEC, 0, lapl_id); + // verify info for 2nd attribute, in decreasing creation order + attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_DEC, 0, lapl_id); assertNotNull(attr_info); - assertTrue("Corder", attr_info.corder == 1); //should equal 1 as this is the order of 2nd attribute created. + assertTrue("Corder", + attr_info.corder == + 1); // should equal 1 as this is the order of 2nd attribute created. - //verify info for 1st attribute, in decreasing creation order - attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_DEC, 1, lapl_id); + // verify info for 1st attribute, in decreasing creation order + attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_DEC, 1, lapl_id); assertNotNull(attr_info); - assertTrue("Corder", attr_info.corder == 0); //should equal 0 as this is the order of 1st attribute created. + assertTrue("Corder", + attr_info.corder == + 0); // should equal 0 as this is the order of 1st attribute created. - //verify info for 1st attribute, in increasing name order - attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 1, lapl_id); + // verify info for 1st attribute, in increasing name order + attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 1, lapl_id); assertNotNull(attr_info); - assertTrue("Corder", attr_info.corder == 0); //should equal 0 as this is the order of 1st attribute created. + assertTrue("Corder", + attr_info.corder == + 0); // should equal 0 as this is the order of 1st attribute created. - //verify info for 2nd attribute, in decreasing name order - attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_DEC, 1, lapl_id); + // verify info for 2nd attribute, in decreasing name order + attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_DEC, 1, lapl_id); assertNotNull(attr_info); - assertTrue("Corder", attr_info.corder == 1); //should equal 1 as this is the order of 2nd attribute created. + assertTrue("Corder", + attr_info.corder == + 1); // should equal 1 as this is the order of 2nd attribute created. } catch (Throwable err) { err.printStackTrace(); @@ -573,25 +687,32 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } if (attr2_id > 0) - try {H5.H5Aclose(attr2_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr2_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Aget_info_by_name() { - long attr_id = HDF5Constants.H5I_INVALID_HID; + public void testH5Aget_info_by_name() + { + long attr_id = HDF5Constants.H5I_INVALID_HID; H5A_info_t attr_info = null; - String obj_name = "."; - String attr_name = "DATASET"; + String obj_name = "."; + String attr_name = "DATASET"; try { - attr_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, - space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr_info = H5.H5Aget_info_by_name(H5fid, obj_name, attr_name, - lapl_id); + attr_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr_info = H5.H5Aget_info_by_name(H5fid, obj_name, attr_name, lapl_id); assertNotNull(attr_info); } catch (Throwable err) { @@ -600,41 +721,45 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Adelete_by_name() { - long attr_id = HDF5Constants.H5I_INVALID_HID; - int ret_val = -1; + public void testH5Adelete_by_name() + { + long attr_id = HDF5Constants.H5I_INVALID_HID; + int ret_val = -1; boolean bool_val = false; - boolean exists = false; + boolean exists = false; try { - attr_id = H5.H5Acreate_by_name(H5fid, ".", "DATASET", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); + attr_id = H5.H5Acreate_by_name(H5fid, ".", "DATASET", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); ret_val = H5.H5Adelete_by_name(H5fid, ".", "DATASET", lapl_id); assertTrue("H5Adelete_by_name", ret_val >= 0); // Check if the Attribute still exists. - bool_val = H5.H5Aexists_by_name(H5fid, ".", "DATASET", - lapl_id); + bool_val = H5.H5Aexists_by_name(H5fid, ".", "DATASET", lapl_id); assertFalse("testH5Adelete_by_name: H5Aexists_by_name", bool_val); exists = H5.H5Aexists(H5fid, "DATASET"); - assertFalse("testH5Adelete_by_name: H5Aexists ",exists); + assertFalse("testH5Adelete_by_name: H5Aexists ", exists); // Negative test. Error thrown when we try to delete an attribute // that has already been deleted. - try{ + try { ret_val = H5.H5Adelete_by_name(H5fid, ".", "DATASET", lapl_id); fail("Negative Test Failed: Error Not thrown."); } catch (AssertionError err) { fail("H5.H5Adelete_by_name: " + err); } - catch (HDF5LibraryException err) {} + catch (HDF5LibraryException err) { + } } catch (Throwable err) { err.printStackTrace(); @@ -642,14 +767,19 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Aexists() { - boolean exists = false; - long attr_id = HDF5Constants.H5I_INVALID_HID; + public void testH5Aexists() + { + boolean exists = false; + long attr_id = HDF5Constants.H5I_INVALID_HID; long attribute_id = HDF5Constants.H5I_INVALID_HID; try { @@ -662,14 +792,14 @@ public class TestH5A { assertFalse("H5Aexists ", exists); try { - attr_id = H5.H5Acreate(H5fid, "dset", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - exists = H5.H5Aexists(H5fid, "dset"); + attr_id = H5.H5Acreate(H5fid, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + exists = H5.H5Aexists(H5fid, "dset"); assertTrue("H5Aexists ", exists); - attribute_id = H5.H5Acreate_by_name(H5fid, ".", "attribute", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); + attribute_id = + H5.H5Acreate_by_name(H5fid, ".", "attribute", type_id, space_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, lapl_id); exists = H5.H5Aexists(H5fid, "attribute"); assertTrue("H5Aexists ", exists); } @@ -679,35 +809,41 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } if (attribute_id > 0) - try {H5.H5Aclose(attribute_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attribute_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Adelete_by_idx_order() { + public void testH5Adelete_by_idx_order() + { boolean exists = false; - long attr1_id = HDF5Constants.H5I_INVALID_HID; - long attr2_id = HDF5Constants.H5I_INVALID_HID; - long attr3_id = HDF5Constants.H5I_INVALID_HID; - long attr4_id = HDF5Constants.H5I_INVALID_HID; + long attr1_id = HDF5Constants.H5I_INVALID_HID; + long attr2_id = HDF5Constants.H5I_INVALID_HID; + long attr3_id = HDF5Constants.H5I_INVALID_HID; + long attr4_id = HDF5Constants.H5I_INVALID_HID; try { - attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - - H5.H5Adelete_by_idx(H5fid, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 3, lapl_id); + attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + + H5.H5Adelete_by_idx(H5fid, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 3, + lapl_id); exists = H5.H5Aexists(H5fid, "attribute4"); assertFalse("H5Adelete_by_idx: H5Aexists", exists); } @@ -717,34 +853,49 @@ public class TestH5A { } finally { if (attr1_id > 0) - try {H5.H5Aclose(attr1_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr1_id); + } + catch (Exception ex) { + } if (attr2_id > 0) - try {H5.H5Aclose(attr2_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr2_id); + } + catch (Exception ex) { + } if (attr3_id > 0) - try {H5.H5Aclose(attr3_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr3_id); + } + catch (Exception ex) { + } if (attr4_id > 0) - try {H5.H5Aclose(attr4_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr4_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Adelete_by_idx_name1() { + public void testH5Adelete_by_idx_name1() + { boolean exists = false; - long attr1_id = HDF5Constants.H5I_INVALID_HID; - long attr2_id = HDF5Constants.H5I_INVALID_HID; - long attr3_id = HDF5Constants.H5I_INVALID_HID; + long attr1_id = HDF5Constants.H5I_INVALID_HID; + long attr2_id = HDF5Constants.H5I_INVALID_HID; + long attr3_id = HDF5Constants.H5I_INVALID_HID; try { - attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - H5.H5Adelete_by_idx(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, lapl_id); + attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + H5.H5Adelete_by_idx(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, + lapl_id); exists = H5.H5Aexists(H5fid, "attribute3"); assertFalse("H5Adelete_by_idx: H5Aexists", exists); } @@ -754,37 +905,47 @@ public class TestH5A { } finally { if (attr1_id > 0) - try {H5.H5Aclose(attr1_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr1_id); + } + catch (Exception ex) { + } if (attr2_id > 0) - try {H5.H5Aclose(attr2_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr2_id); + } + catch (Exception ex) { + } if (attr3_id > 0) - try {H5.H5Aclose(attr3_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr3_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Adelete_by_idx_name2() { + public void testH5Adelete_by_idx_name2() + { boolean exists = false; - long attr1_id = HDF5Constants.H5I_INVALID_HID; - long attr2_id = HDF5Constants.H5I_INVALID_HID; - long attr3_id = HDF5Constants.H5I_INVALID_HID; - long attr4_id = HDF5Constants.H5I_INVALID_HID; + long attr1_id = HDF5Constants.H5I_INVALID_HID; + long attr2_id = HDF5Constants.H5I_INVALID_HID; + long attr3_id = HDF5Constants.H5I_INVALID_HID; + long attr4_id = HDF5Constants.H5I_INVALID_HID; try { - attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - - H5.H5Adelete_by_idx(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_DEC, 3, lapl_id); + attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + + H5.H5Adelete_by_idx(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_DEC, 3, + lapl_id); exists = H5.H5Aexists(H5fid, "attribute1"); assertFalse("H5Adelete_by_idx: H5Aexists", exists); } @@ -794,47 +955,66 @@ public class TestH5A { } finally { if (attr1_id > 0) - try {H5.H5Aclose(attr1_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr1_id); + } + catch (Exception ex) { + } if (attr2_id > 0) - try {H5.H5Aclose(attr2_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr2_id); + } + catch (Exception ex) { + } if (attr3_id > 0) - try {H5.H5Aclose(attr3_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr3_id); + } + catch (Exception ex) { + } if (attr4_id > 0) - try {H5.H5Aclose(attr4_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr4_id); + } + catch (Exception ex) { + } } } @Test(expected = NullPointerException.class) - public void testH5Adelete_by_idx_null() throws Throwable { - H5.H5Adelete_by_idx(H5fid, null, HDF5Constants.H5_INDEX_CRT_ORDER, - HDF5Constants.H5_ITER_INC, 0, lapl_id); + public void testH5Adelete_by_idx_null() throws Throwable + { + H5.H5Adelete_by_idx(H5fid, null, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, + lapl_id); } @Test(expected = HDF5LibraryException.class) - public void testH5Adelete_by_idx_invalidobject() throws Throwable { - H5.H5Adelete_by_idx(H5fid, "invalid", HDF5Constants.H5_INDEX_CRT_ORDER, - HDF5Constants.H5_ITER_INC, 0, lapl_id); + public void testH5Adelete_by_idx_invalidobject() throws Throwable + { + H5.H5Adelete_by_idx(H5fid, "invalid", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, + lapl_id); } @Test - public void testH5Aopen_by_name() { - String obj_name = "."; - String attr_name = "DATASET"; + public void testH5Aopen_by_name() + { + String obj_name = "."; + String attr_name = "DATASET"; long attribute_id = HDF5Constants.H5I_INVALID_HID; - long aid = HDF5Constants.H5I_INVALID_HID; + long aid = HDF5Constants.H5I_INVALID_HID; try { - attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); + attribute_id = + H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, lapl_id); - //open Attribute by name - if(attribute_id >= 0) { + // open Attribute by name + if (attribute_id >= 0) { try { aid = H5.H5Aopen_by_name(H5fid, obj_name, attr_name, HDF5Constants.H5P_DEFAULT, lapl_id); - assertTrue("testH5Aopen_by_name: ", aid>=0); + assertTrue("testH5Aopen_by_name: ", aid >= 0); } - catch(Throwable err) { + catch (Throwable err) { err.printStackTrace(); fail("H5.H5Aopen_by_name " + err); } @@ -846,21 +1026,30 @@ public class TestH5A { } finally { if (aid > 0) - try {H5.H5Aclose(aid);} catch (Exception ex) {} + try { + H5.H5Aclose(aid); + } + catch (Exception ex) { + } if (attribute_id > 0) - try {H5.H5Aclose(attribute_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attribute_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Awrite_readVL() { - String attr_name = "VLdata"; - long attr_id = HDF5Constants.H5I_INVALID_HID; - long atype_id = HDF5Constants.H5I_INVALID_HID; - long aspace_id = HDF5Constants.H5I_INVALID_HID; - String[] str_data = { "Parting", "is such", "sweet", "sorrow." }; - long[] dims = { str_data.length }; - long lsize = 1; + public void testH5Awrite_readVL() + { + String attr_name = "VLdata"; + long attr_id = HDF5Constants.H5I_INVALID_HID; + long atype_id = HDF5Constants.H5I_INVALID_HID; + long aspace_id = HDF5Constants.H5I_INVALID_HID; + String[] str_data = {"Parting", "is such", "sweet", "sorrow."}; + long[] dims = {str_data.length}; + long lsize = 1; try { atype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1); @@ -870,7 +1059,11 @@ public class TestH5A { } catch (Exception err) { if (atype_id > 0) - try {H5.H5Tclose(atype_id);} catch (Exception ex) {} + try { + H5.H5Tclose(atype_id); + } + catch (Exception ex) { + } err.printStackTrace(); fail("H5.testH5Awrite_readVL: " + err); } @@ -878,8 +1071,8 @@ public class TestH5A { try { aspace_id = H5.H5Screate_simple(1, dims, null); assertTrue(aspace_id > 0); - attr_id = H5.H5Acreate(H5did, attr_name, atype_id, aspace_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + attr_id = H5.H5Acreate(H5did, attr_name, atype_id, aspace_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); assertTrue("testH5Awrite_readVL: ", attr_id >= 0); H5.H5AwriteVL(attr_id, atype_id, str_data); @@ -889,7 +1082,7 @@ public class TestH5A { for (int j = 0; j < dims.length; j++) { lsize *= dims[j]; } - String[] strs = new String[(int) lsize]; + String[] strs = new String[(int)lsize]; for (int j = 0; j < lsize; j++) { strs[j] = ""; } @@ -910,19 +1103,32 @@ public class TestH5A { } finally { if (attr_id > 0) - try {H5.H5Aclose(attr_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr_id); + } + catch (Exception ex) { + } if (aspace_id > 0) - try {H5.H5Sclose(aspace_id);} catch (Exception ex) {} + try { + H5.H5Sclose(aspace_id); + } + catch (Exception ex) { + } if (atype_id > 0) - try {H5.H5Tclose(atype_id);} catch (Exception ex) {} + try { + H5.H5Tclose(atype_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Aget_create_plist() { - String attr_name = "DATASET1"; + public void testH5Aget_create_plist() + { + String attr_name = "DATASET1"; int char_encoding = 0; - long plist_id = HDF5Constants.H5I_INVALID_HID; + long plist_id = HDF5Constants.H5I_INVALID_HID; long attribute_id = HDF5Constants.H5I_INVALID_HID; try { @@ -942,11 +1148,13 @@ public class TestH5A { err.printStackTrace(); fail("H5Pget_char_encoding: " + err); } - assertTrue("testH5Aget_create_plist: get_char_encoding", char_encoding == HDF5Constants.H5T_CSET_ASCII); + assertTrue("testH5Aget_create_plist: get_char_encoding", + char_encoding == HDF5Constants.H5T_CSET_ASCII); // Create an attribute for the dataset using the property list try { - attribute_id = H5.H5Acreate(H5fid, attr_name, type_id, space_id, plist_id, HDF5Constants.H5P_DEFAULT); + attribute_id = + H5.H5Acreate(H5fid, attr_name, type_id, space_id, plist_id, HDF5Constants.H5P_DEFAULT); assertTrue("testH5Aget_create_plist: H5Acreate", attribute_id >= 0); } catch (Throwable err) { @@ -967,7 +1175,8 @@ public class TestH5A { err.printStackTrace(); fail("H5Pget_char_encoding: " + err); } - assertTrue("testH5Aget_create_plist: get_char_encoding", char_encoding == HDF5Constants.H5T_CSET_ASCII); + assertTrue("testH5Aget_create_plist: get_char_encoding", + char_encoding == HDF5Constants.H5T_CSET_ASCII); } catch (Throwable err) { err.printStackTrace(); @@ -975,14 +1184,23 @@ public class TestH5A { } finally { if (plist_id > 0) - try {H5.H5Pclose(plist_id);} catch (Exception ex) {} + try { + H5.H5Pclose(plist_id); + } + catch (Exception ex) { + } if (attribute_id > 0) - try {H5.H5Aclose(attribute_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attribute_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Aiterate() { + public void testH5Aiterate() + { long attr1_id = HDF5Constants.H5I_INVALID_HID; long attr2_id = HDF5Constants.H5I_INVALID_HID; long attr3_id = HDF5Constants.H5I_INVALID_HID; @@ -990,48 +1208,56 @@ public class TestH5A { class idata { public String attr_name = null; - idata(String name) { - this.attr_name = name; - } + idata(String name) { this.attr_name = name; } } class H5A_iter_data implements H5A_iterate_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } H5A_iterate_t iter_data = new H5A_iter_data(); class H5A_iter_callback implements H5A_iterate_cb { - public int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data) { + public int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data) + { idata id = new idata(name); ((H5A_iter_data)op_data).iterdata.add(id); return 0; } } try { - attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); + attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); H5A_iterate_cb iter_cb = new H5A_iter_callback(); try { - H5.H5Aiterate(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0L, iter_cb, iter_data); + H5.H5Aiterate(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0L, iter_cb, + iter_data); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Aiterate: " + err); } - assertFalse("H5Aiterate ",((H5A_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Aiterate "+((H5A_iter_data)iter_data).iterdata.size(),((H5A_iter_data)iter_data).iterdata.size()==4); - assertTrue("H5Aiterate "+(((H5A_iter_data)iter_data).iterdata.get(0)).attr_name,(((H5A_iter_data)iter_data).iterdata.get(0)).attr_name.compareToIgnoreCase("attribute1")==0); - assertTrue("H5Aiterate "+(((H5A_iter_data)iter_data).iterdata.get(1)).attr_name,(((H5A_iter_data)iter_data).iterdata.get(1)).attr_name.compareToIgnoreCase("attribute2")==0); - assertTrue("H5Aiterate "+((idata)((H5A_iter_data)iter_data).iterdata.get(2)).attr_name,(((H5A_iter_data)iter_data).iterdata.get(2)).attr_name.compareToIgnoreCase("attribute3")==0); - assertTrue("H5Aiterate "+((idata)((H5A_iter_data)iter_data).iterdata.get(3)).attr_name,((idata)((H5A_iter_data)iter_data).iterdata.get(3)).attr_name.compareToIgnoreCase("attribute4")==0); + assertFalse("H5Aiterate ", ((H5A_iter_data)iter_data).iterdata.isEmpty()); + assertTrue("H5Aiterate " + ((H5A_iter_data)iter_data).iterdata.size(), + ((H5A_iter_data)iter_data).iterdata.size() == 4); + assertTrue( + "H5Aiterate " + (((H5A_iter_data)iter_data).iterdata.get(0)).attr_name, + (((H5A_iter_data)iter_data).iterdata.get(0)).attr_name.compareToIgnoreCase("attribute1") == + 0); + assertTrue( + "H5Aiterate " + (((H5A_iter_data)iter_data).iterdata.get(1)).attr_name, + (((H5A_iter_data)iter_data).iterdata.get(1)).attr_name.compareToIgnoreCase("attribute2") == + 0); + assertTrue( + "H5Aiterate " + ((idata)((H5A_iter_data)iter_data).iterdata.get(2)).attr_name, + (((H5A_iter_data)iter_data).iterdata.get(2)).attr_name.compareToIgnoreCase("attribute3") == + 0); + assertTrue("H5Aiterate " + ((idata)((H5A_iter_data)iter_data).iterdata.get(3)).attr_name, + ((idata)((H5A_iter_data)iter_data).iterdata.get(3)) + .attr_name.compareToIgnoreCase("attribute4") == 0); } catch (Throwable err) { err.printStackTrace(); @@ -1039,18 +1265,35 @@ public class TestH5A { } finally { if (attr1_id > 0) - try {H5.H5Aclose(attr1_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr1_id); + } + catch (Exception ex) { + } if (attr2_id > 0) - try {H5.H5Aclose(attr2_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr2_id); + } + catch (Exception ex) { + } if (attr3_id > 0) - try {H5.H5Aclose(attr3_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr3_id); + } + catch (Exception ex) { + } if (attr4_id > 0) - try {H5.H5Aclose(attr4_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr4_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Aiterate_by_name() { + public void testH5Aiterate_by_name() + { long attr1_id = HDF5Constants.H5I_INVALID_HID; long attr2_id = HDF5Constants.H5I_INVALID_HID; long attr3_id = HDF5Constants.H5I_INVALID_HID; @@ -1058,45 +1301,44 @@ public class TestH5A { class idata { public String attr_name = null; - idata(String name) { - this.attr_name = name; - } + idata(String name) { this.attr_name = name; } } class H5A_iter_data implements H5A_iterate_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } H5A_iterate_t iter_data = new H5A_iter_data(); class H5A_iter_callback implements H5A_iterate_cb { - public int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data) { + public int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data) + { idata id = new idata(name); ((H5A_iter_data)op_data).iterdata.add(id); return 0; } } try { - attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); - attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", - type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); + attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); H5A_iterate_cb iter_cb = new H5A_iter_callback(); try { - H5.H5Aiterate_by_name(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT); + H5.H5Aiterate_by_name(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, + iter_cb, iter_data, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Aiterate_by_name: " + err); } - assertFalse("H5Aiterate_by_name ",((H5A_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Aiterate_by_name "+((H5A_iter_data)iter_data).iterdata.size(),((H5A_iter_data)iter_data).iterdata.size()==4); - assertTrue("H5Aiterate_by_name "+((idata)((H5A_iter_data)iter_data).iterdata.get(1)).attr_name,((idata)((H5A_iter_data)iter_data).iterdata.get(1)).attr_name.compareToIgnoreCase("attribute2")==0); + assertFalse("H5Aiterate_by_name ", ((H5A_iter_data)iter_data).iterdata.isEmpty()); + assertTrue("H5Aiterate_by_name " + ((H5A_iter_data)iter_data).iterdata.size(), + ((H5A_iter_data)iter_data).iterdata.size() == 4); + assertTrue("H5Aiterate_by_name " + ((idata)((H5A_iter_data)iter_data).iterdata.get(1)).attr_name, + ((idata)((H5A_iter_data)iter_data).iterdata.get(1)) + .attr_name.compareToIgnoreCase("attribute2") == 0); } catch (Throwable err) { err.printStackTrace(); @@ -1104,17 +1346,29 @@ public class TestH5A { } finally { if (attr1_id > 0) - try {H5.H5Aclose(attr1_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr1_id); + } + catch (Exception ex) { + } if (attr2_id > 0) - try {H5.H5Aclose(attr2_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr2_id); + } + catch (Exception ex) { + } if (attr3_id > 0) - try {H5.H5Aclose(attr3_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr3_id); + } + catch (Exception ex) { + } if (attr4_id > 0) - try {H5.H5Aclose(attr4_id);} catch (Exception ex) {} + try { + H5.H5Aclose(attr4_id); + } + catch (Exception ex) { + } } } - } - - - diff --git a/java/test/TestH5Arw.java b/java/test/TestH5Arw.java index 8ce2fee..56ac7f4 100644 --- a/java/test/TestH5Arw.java +++ b/java/test/TestH5Arw.java @@ -33,76 +33,103 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Arw { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_INTS_FILE = "tintsattrs.h5"; private static final String H5_FLTS_FILE = "tfloatsattrs.h5"; - private static final int DIM_X = 8; - private static final int DIM8_Y = 8; - private static final int DIM16_Y = 16; - private static final int DIM32_Y = 32; - private static final int DIM64_Y = 64; - private static final int DIM128_Y = 128; - private static final String DATASETU08 = "DU08BITS"; - private static final String DATASETS08 = "DS08BITS"; - private static final String DATASETU16 = "DU16BITS"; - private static final String DATASETS16 = "DS16BITS"; - private static final String DATASETU32 = "DU32BITS"; - private static final String DATASETS32 = "DS32BITS"; - private static final String DATASETU64 = "DU64BITS"; - private static final String DATASETS64 = "DS64BITS"; - private static final String DATASETF32 = "DS32BITS"; - private static final String DATASETF64 = "DS64BITS"; - private static final String DATASETF128 = "DS128BITS"; - private static final int RANK = 2; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5aid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - - private final void _closeH5file() throws HDF5LibraryException { + private static final int DIM_X = 8; + private static final int DIM8_Y = 8; + private static final int DIM16_Y = 16; + private static final int DIM32_Y = 32; + private static final int DIM64_Y = 64; + private static final int DIM128_Y = 128; + private static final String DATASETU08 = "DU08BITS"; + private static final String DATASETS08 = "DS08BITS"; + private static final String DATASETU16 = "DU16BITS"; + private static final String DATASETS16 = "DS16BITS"; + private static final String DATASETU32 = "DU32BITS"; + private static final String DATASETS32 = "DS32BITS"; + private static final String DATASETU64 = "DU64BITS"; + private static final String DATASETS64 = "DS64BITS"; + private static final String DATASETF32 = "DS32BITS"; + private static final String DATASETF64 = "DS64BITS"; + private static final String DATASETF128 = "DS128BITS"; + private static final int RANK = 2; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5aid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + + private final void _closeH5file() throws HDF5LibraryException + { if (H5aid >= 0) - try {H5.H5Aclose(H5aid);} catch (Exception ex) {} + try { + H5.H5Aclose(H5aid); + } + catch (Exception ex) { + } if (H5did >= 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } - public void openH5file(String filename, String dsetname) { - try { - H5fid = H5.H5Fopen(filename, - HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5Arw._openH5file: " + err); - } - assertTrue("TestH5Arw._openH5file: H5.H5Fopen: ", H5fid >= 0); - try { - H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5Arw._openH5file: " + err); - } - assertTrue("TestH5Arw._openH5file: H5.H5Dopen: ", H5did >= 0); - try { - H5aid = H5.H5Aopen(H5did, dsetname, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5Arw._openH5file: " + err); - } - assertTrue("TestH5Arw._openH5file: H5.H5Aopen: ", H5aid >= 0); + public void openH5file(String filename, String dsetname) + { + try { + H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5Arw._openH5file: " + err); + } + assertTrue("TestH5Arw._openH5file: H5.H5Fopen: ", H5fid >= 0); + try { + H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5Arw._openH5file: " + err); + } + assertTrue("TestH5Arw._openH5file: H5.H5Dopen: ", H5did >= 0); + try { + H5aid = H5.H5Aopen(H5did, dsetname, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5Arw._openH5file: " + err); + } + assertTrue("TestH5Arw._openH5file: H5.H5Aopen: ", H5aid >= 0); } @After - public void closeH5file() throws HDF5LibraryException { + public void closeH5file() throws HDF5LibraryException + { if (H5aid >= 0) - try {H5.H5Aclose(H5aid);} catch (Exception ex) {} + try { + H5.H5Aclose(H5aid); + } + catch (Exception ex) { + } if (H5did >= 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } H5fid = HDF5Constants.H5I_INVALID_HID; H5did = HDF5Constants.H5I_INVALID_HID; H5aid = HDF5Constants.H5I_INVALID_HID; @@ -110,14 +137,15 @@ public class TestH5Arw { } @Before - public void verifyCount() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0); + public void verifyCount() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @Test - public void testH5Aread_8bit_ints() { + public void testH5Aread_8bit_ints() + { byte[][] attr_data = new byte[DIM_X][DIM8_Y]; try { @@ -182,7 +210,8 @@ public class TestH5Arw { } @Test - public void testH5Aread_16bit_ints() { + public void testH5Aread_16bit_ints() + { short[][] attr_data = new short[DIM_X][DIM16_Y]; try { @@ -247,7 +276,8 @@ public class TestH5Arw { } @Test - public void testH5Aread_32bit_ints() { + public void testH5Aread_32bit_ints() + { int[][] attr_data = new int[DIM_X][DIM16_Y]; try { @@ -312,7 +342,8 @@ public class TestH5Arw { } @Test - public void testH5Aread_64bit_ints() { + public void testH5Aread_64bit_ints() + { long[][] attr_data = new long[DIM_X][DIM64_Y]; try { @@ -377,7 +408,8 @@ public class TestH5Arw { } @Test - public void testH5Aread_32bit_floats() { + public void testH5Aread_32bit_floats() + { float[][] attr_data = new float[DIM_X][DIM32_Y]; try { @@ -401,7 +433,8 @@ public class TestH5Arw { } @Test - public void testH5Aread_64bit_floats() { + public void testH5Aread_64bit_floats() + { double[][] attr_data = new double[DIM_X][DIM64_Y]; try { @@ -425,7 +458,8 @@ public class TestH5Arw { } @Test - public void testH5Aread_128bit_floats() { + public void testH5Aread_128bit_floats() + { byte[][][] attr_data = new byte[DIM_X][DIM128_Y][8]; try { @@ -445,5 +479,4 @@ public class TestH5Arw { fail("testH5Aread_128bit_floats: H5Aread: " + err); } } - } diff --git a/java/test/TestH5D.java b/java/test/TestH5D.java index dac3a9c..4bab1a9 100644 --- a/java/test/TestH5D.java +++ b/java/test/TestH5D.java @@ -33,46 +33,50 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5D { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "testD.h5"; - private static final int DIM_X = 4; - private static final int DIM_Y = 6; - private static final int RANK = 2; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5faplid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5dtid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - long H5did0 = HDF5Constants.H5I_INVALID_HID; - long H5dcpl_id = HDF5Constants.H5I_INVALID_HID; - long[] H5dims = { DIM_X, DIM_Y }; + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + private static final int RANK = 2; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5faplid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5dtid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + long H5did0 = HDF5Constants.H5I_INVALID_HID; + long H5dcpl_id = HDF5Constants.H5I_INVALID_HID; + long[] H5dims = {DIM_X, DIM_Y}; // Values for the status of space allocation enum H5D_space_status { - H5D_SPACE_STATUS_ERROR(-1), H5D_SPACE_STATUS_NOT_ALLOCATED(0), H5D_SPACE_STATUS_PART_ALLOCATED( - 1), H5D_SPACE_STATUS_ALLOCATED(2); + H5D_SPACE_STATUS_ERROR(-1), + H5D_SPACE_STATUS_NOT_ALLOCATED(0), + H5D_SPACE_STATUS_PART_ALLOCATED(1), + H5D_SPACE_STATUS_ALLOCATED(2); private int code; - H5D_space_status(int space_status) { - this.code = space_status; - } + H5D_space_status(int space_status) { this.code = space_status; } - public int getCode() { - return this.code; - } + public int getCode() { return this.code; } } - private final void _deleteFile(String filename) { + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} - catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } - private final void _createPDataset(long fid, long dsid, String name, long dcpl_val) { + private final void _createPDataset(long fid, long dsid, String name, long dcpl_val) + { try { H5dcpl_id = H5.H5Pcreate(dcpl_val); @@ -94,9 +98,8 @@ public class TestH5D { } try { - H5did0 = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, H5dcpl_id, HDF5Constants.H5P_DEFAULT); + H5did0 = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + H5dcpl_id, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -105,7 +108,8 @@ public class TestH5D { assertTrue("TestH5D._createPDataset.H5Dcreate: ", H5did0 >= 0); } - private final void _createChunkDataset(long fid, long dsid, String name, long dapl) { + private final void _createChunkDataset(long fid, long dsid, String name, long dapl) + { try { H5dcpl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE); @@ -127,9 +131,8 @@ public class TestH5D { } try { - H5did = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, H5dcpl_id, dapl); + H5did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + H5dcpl_id, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -138,11 +141,11 @@ public class TestH5D { assertTrue("TestH5D._createChunkDataset.H5Dcreate: ", H5did >= 0); } - private final void _createDataset(long fid, long dsid, String name, long dapl) { + private final void _createDataset(long fid, long dsid, String name, long dapl) + { try { - H5did = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + H5did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -151,7 +154,8 @@ public class TestH5D { assertTrue("TestH5D._createDataset.H5Dcreate: ", H5did >= 0); } - private final void _createVLDataset(long fid, long dsid, String name, long dapl) { + private final void _createVLDataset(long fid, long dsid, String name, long dapl) + { try { H5dtid = H5.H5Tcopy(HDF5Constants.H5T_C_S1); } @@ -169,8 +173,8 @@ public class TestH5D { fail("H5.H5Tset_size: " + err); } try { - H5did = H5.H5Dcreate(fid, name, H5dtid, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + H5did = H5.H5Dcreate(fid, name, H5dtid, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -179,99 +183,153 @@ public class TestH5D { assertTrue("TestH5D._createVLDataset.H5Dcreate: ", H5did >= 0); } - private final void _closeH5file() throws HDF5LibraryException { + private final void _closeH5file() throws HDF5LibraryException + { if (H5dcpl_id >= 0) - try {H5.H5Pclose(H5dcpl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(H5dcpl_id); + } + catch (Exception ex) { + } if (H5did0 >= 0) - try {H5.H5Dclose(H5did0);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did0); + } + catch (Exception ex) { + } if (H5did >= 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5dtid > 0) - try {H5.H5Tclose(H5dtid);} catch (Exception ex) {} + try { + H5.H5Tclose(H5dtid); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } - private final void _openH5file(String filename, String dsetname, long dapl) { - try { - H5fid = H5.H5Fopen(filename, - HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5D._openH5file: " + err); - } - assertTrue("TestH5D._openH5file: H5.H5Fopen: ",H5fid >= 0); - try { - H5did = H5.H5Dopen(H5fid, dsetname, dapl); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5D._openH5file: " + err); - } - assertTrue("TestH5D._openH5file: H5.H5Dopen: ",H5did >= 0); - try { - H5dsid = H5.H5Dget_space(H5did); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5D._openH5file: " + err); - } - assertTrue("TestH5D._openH5file: H5.H5Screate_simple: ",H5dsid > 0); + private final void _openH5file(String filename, String dsetname, long dapl) + { + try { + H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5D._openH5file: " + err); + } + assertTrue("TestH5D._openH5file: H5.H5Fopen: ", H5fid >= 0); + try { + H5did = H5.H5Dopen(H5fid, dsetname, dapl); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5D._openH5file: " + err); + } + assertTrue("TestH5D._openH5file: H5.H5Dopen: ", H5did >= 0); + try { + H5dsid = H5.H5Dget_space(H5did); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5D._openH5file: " + err); + } + assertTrue("TestH5D._openH5file: H5.H5Screate_simple: ", H5dsid > 0); } @Before - public void createH5file() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); - System.out.print(testname.getMethodName()); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); + System.out.print(testname.getMethodName()); try { H5faplid = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS); - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, H5faplid); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, H5faplid); H5dsid = H5.H5Screate_simple(RANK, H5dims, null); } catch (Throwable err) { err.printStackTrace(); fail("TestH5D.createH5file: " + err); } - assertTrue("TestH5D.createH5file: H5.H5Fcreate: ",H5fid >= 0); - assertTrue("TestH5D.createH5file: H5.H5Screate_simple: ",H5dsid >= 0); + assertTrue("TestH5D.createH5file: H5.H5Fcreate: ", H5fid >= 0); + assertTrue("TestH5D.createH5file: H5.H5Screate_simple: ", H5dsid >= 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5dcpl_id >= 0) - try {H5.H5Pclose(H5dcpl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(H5dcpl_id); + } + catch (Exception ex) { + } if (H5did0 >= 0) - try {H5.H5Dclose(H5did0);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did0); + } + catch (Exception ex) { + } if (H5did >= 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5dtid > 0) - try {H5.H5Tclose(H5dtid);} catch (Exception ex) {} + try { + H5.H5Tclose(H5dtid); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5faplid >= 0) - try {H5.H5Pclose(H5faplid);} catch (Exception ex) {} + try { + H5.H5Pclose(H5faplid); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } _deleteFile(H5_FILE); System.out.println(); } @Test - public void testH5Dcreate() { + public void testH5Dcreate() + { long dataset_id = HDF5Constants.H5I_INVALID_HID; try { - dataset_id = H5.H5Dcreate(H5fid, "dset", - HDF5Constants.H5T_STD_I32BE, H5dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + dataset_id = + H5.H5Dcreate(H5fid, "dset", HDF5Constants.H5T_STD_I32BE, H5dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Exception err) { err.printStackTrace(); @@ -290,11 +348,12 @@ public class TestH5D { } @Test - public void testH5Dcreate_anon() { + public void testH5Dcreate_anon() + { long dataset_id = HDF5Constants.H5I_INVALID_HID; try { - dataset_id = H5.H5Dcreate_anon(H5fid, HDF5Constants.H5T_STD_I32BE, - H5dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + dataset_id = H5.H5Dcreate_anon(H5fid, HDF5Constants.H5T_STD_I32BE, H5dsid, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Exception err) { err.printStackTrace(); @@ -313,13 +372,14 @@ public class TestH5D { } @Test - public void testH5Dopen() { + public void testH5Dopen() + { long dataset_id = HDF5Constants.H5I_INVALID_HID; _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); try { H5.H5Dclose(H5did); - H5did = HDF5Constants.H5I_INVALID_HID; + H5did = HDF5Constants.H5I_INVALID_HID; dataset_id = H5.H5Dopen(H5fid, "dset", HDF5Constants.H5P_DEFAULT); } catch (Exception err) { @@ -339,7 +399,8 @@ public class TestH5D { } @Test - public void testH5Dget_storage_size_empty() { + public void testH5Dget_storage_size_empty() + { long storage_size = 0; _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); @@ -354,10 +415,11 @@ public class TestH5D { } @Test - public void testH5Dget_storage_size() { + public void testH5Dget_storage_size() + { long storage_size = 0; int[][] dset_data = new int[DIM_X][DIM_Y]; - int FILLVAL = 99; + int FILLVAL = 99; _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); // Initialize the dataset. @@ -367,9 +429,8 @@ public class TestH5D { try { if (H5did >= 0) - H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data[0]); + H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, dset_data[0]); } catch (Exception e) { e.printStackTrace(); @@ -382,21 +443,22 @@ public class TestH5D { err.printStackTrace(); fail("testH5Dget_storage_size: " + err); } - assertTrue("testH5Dget_storage_size: "+storage_size, storage_size == DIM_X*DIM_Y*4); + assertTrue("testH5Dget_storage_size: " + storage_size, storage_size == DIM_X * DIM_Y * 4); } @Test - public void testH5Dget_access_plist() { - long dapl_id = HDF5Constants.H5I_INVALID_HID; - long test_dapl_id = HDF5Constants.H5I_INVALID_HID; - int[] mdc_nelmts1 = {0}; - int[] mdc_nelmts2 = {0}; + public void testH5Dget_access_plist() + { + long dapl_id = HDF5Constants.H5I_INVALID_HID; + long test_dapl_id = HDF5Constants.H5I_INVALID_HID; + int[] mdc_nelmts1 = {0}; + int[] mdc_nelmts2 = {0}; long[] rdcc_nelmts1 = {0}; long[] rdcc_nelmts2 = {0}; long[] rdcc_nbytes1 = {0}; long[] rdcc_nbytes2 = {0}; - double[] rdcc_w01 = {0}; - double[] rdcc_w02 = {0}; + double[] rdcc_w01 = {0}; + double[] rdcc_w02 = {0}; try { test_dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); @@ -442,14 +504,15 @@ public class TestH5D { catch (Exception err) { err.printStackTrace(); } - assertTrue("testH5Dget_access_plist: ", rdcc_nelmts2==rdcc_nelmts2 && rdcc_nbytes2==rdcc_nbytes2); + assertTrue("testH5Dget_access_plist: ", rdcc_nelmts2 == rdcc_nelmts2 && rdcc_nbytes2 == rdcc_nbytes2); } @Test - public void testH5Dget_space_status() { + public void testH5Dget_space_status() + { int[][] write_dset_data = new int[DIM_X][DIM_Y]; - int space_status = -1; - int space_status0 = -1; + int space_status = -1; + int space_status0 = -1; // Initialize the dataset. for (int indx = 0; indx < DIM_X; indx++) @@ -466,7 +529,8 @@ public class TestH5D { catch (Exception e) { e.printStackTrace(); } - assertTrue("testH5Dget_space_status0 - H5.H5Dget_space_status: ", space_status0 == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode()); + assertTrue("testH5Dget_space_status0 - H5.H5Dget_space_status: ", + space_status0 == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode()); // Retrieve and print space status and storage size for dset. try { @@ -475,12 +539,12 @@ public class TestH5D { catch (Exception e) { e.printStackTrace(); } - assertFalse("testH5Dget_space_status - H5.H5Dget_space_status: ", space_status == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode()); + assertFalse("testH5Dget_space_status - H5.H5Dget_space_status: ", + space_status == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode()); // Write the data to the dataset. try { - H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, write_dset_data); } catch (Exception e) { @@ -494,16 +558,18 @@ public class TestH5D { catch (Exception e) { e.printStackTrace(); } - assertTrue("testH5Dget_space_status - H5.H5Dget_space_status: ", space_status == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode()); + assertTrue("testH5Dget_space_status - H5.H5Dget_space_status: ", + space_status == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode()); } @Test(expected = HDF5LibraryException.class) - public void testH5Dget_space_closed() throws Throwable { + public void testH5Dget_space_closed() throws Throwable + { long dataset_id = HDF5Constants.H5I_INVALID_HID; try { - dataset_id = H5.H5Dcreate(H5fid, "dset", - HDF5Constants.H5T_STD_I32BE, H5dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + dataset_id = + H5.H5Dcreate(H5fid, "dset", HDF5Constants.H5T_STD_I32BE, H5dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -516,7 +582,8 @@ public class TestH5D { } @Test - public void testH5Dget_space() { + public void testH5Dget_space() + { long dataspace_id = HDF5Constants.H5I_INVALID_HID; _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); @@ -540,12 +607,13 @@ public class TestH5D { } @Test(expected = HDF5LibraryException.class) - public void testH5Dget_type_closed() throws Throwable { + public void testH5Dget_type_closed() throws Throwable + { long dataset_id = HDF5Constants.H5I_INVALID_HID; try { - dataset_id = H5.H5Dcreate(H5fid, "dset", - HDF5Constants.H5T_STD_I32BE, H5dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + dataset_id = + H5.H5Dcreate(H5fid, "dset", HDF5Constants.H5T_STD_I32BE, H5dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -558,7 +626,8 @@ public class TestH5D { } @Test - public void testH5Dget_type() { + public void testH5Dget_type() + { long datatype_id = HDF5Constants.H5I_INVALID_HID; _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); @@ -582,9 +651,10 @@ public class TestH5D { } @Test - public void testH5Dget_offset() { + public void testH5Dget_offset() + { int[][] write_dset_data = new int[DIM_X][DIM_Y]; - long dset_address = 0; + long dset_address = 0; _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); try { @@ -600,8 +670,7 @@ public class TestH5D { } // Write the data to the dataset. try { - H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, write_dset_data); } catch (Exception e) { @@ -621,15 +690,16 @@ public class TestH5D { } @Test - public void testH5Dfill_null() { - int[] buf_data = new int[DIM_X*DIM_Y]; + public void testH5Dfill_null() + { + int[] buf_data = new int[DIM_X * DIM_Y]; // Initialize memory buffer for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) { buf_data[(indx * DIM_Y) + jndx] = indx * jndx - jndx; } - byte[] buf_array = HDFNativeData.intToByte(0, DIM_X*DIM_Y, buf_data); + byte[] buf_array = HDFNativeData.intToByte(0, DIM_X * DIM_Y, buf_data); // Fill selection in memory try { @@ -644,12 +714,13 @@ public class TestH5D { // Verify memory buffer the hard way for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) - assertTrue("H5.H5Dfill: [" + indx+","+jndx + "] ", buf_data[(indx * DIM_Y) + jndx] == 0); + assertTrue("H5.H5Dfill: [" + indx + "," + jndx + "] ", buf_data[(indx * DIM_Y) + jndx] == 0); } @Test - public void testH5Dfill() { - int[] buf_data = new int[DIM_X*DIM_Y]; + public void testH5Dfill() + { + int[] buf_data = new int[DIM_X * DIM_Y]; byte[] fill_value = HDFNativeData.intToByte(254); // Initialize memory buffer @@ -657,11 +728,12 @@ public class TestH5D { for (int jndx = 0; jndx < DIM_Y; jndx++) { buf_data[(indx * DIM_Y) + jndx] = indx * jndx - jndx; } - byte[] buf_array = HDFNativeData.intToByte(0, DIM_X*DIM_Y, buf_data); + byte[] buf_array = HDFNativeData.intToByte(0, DIM_X * DIM_Y, buf_data); // Fill selection in memory try { - H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid); + H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, + H5dsid); } catch (Exception err) { err.printStackTrace(); @@ -672,46 +744,51 @@ public class TestH5D { // Verify memory buffer the hard way for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) - assertTrue("H5.H5Dfill: [" + indx+","+jndx + "] ", buf_data[(indx * DIM_Y) + jndx] == 254); + assertTrue("H5.H5Dfill: [" + indx + "," + jndx + "] ", + buf_data[(indx * DIM_Y) + jndx] == 254); } @Test - public void testH5Diterate() { + public void testH5Diterate() + { final int SPACE_RANK = 2; final int SPACE_FILL = 254; class H5D_iter_data implements H5D_iterate_t { - public int fill_value; /* The fill value to check */ - public long fill_curr_coord; /* Current coordinate to examine */ - public long[] fill_coords; /* Pointer to selection's coordinates */ + public int fill_value; /* The fill value to check */ + public long fill_curr_coord; /* Current coordinate to examine */ + public long[] fill_coords; /* Pointer to selection's coordinates */ } H5D_iterate_t iter_data = new H5D_iter_data(); class H5D_iter_callback implements H5D_iterate_cb { - public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_iterate_t op_data) { - //Check value in current buffer location + public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_iterate_t op_data) + { + // Check value in current buffer location int element = HDFNativeData.byteToInt(elem_buf, 0); - if(element != ((H5D_iter_data)op_data).fill_value) + if (element != ((H5D_iter_data)op_data).fill_value) return -1; - //Check number of dimensions - if(ndim != SPACE_RANK) - return(-1); - //Check Coordinates + // Check number of dimensions + if (ndim != SPACE_RANK) + return (-1); + // Check Coordinates long[] fill_coords = new long[2]; - fill_coords[0] = ((H5D_iter_data)op_data).fill_coords[(int) (2 * ((H5D_iter_data)op_data).fill_curr_coord)]; - fill_coords[1] = ((H5D_iter_data)op_data).fill_coords[(int) (2 * ((H5D_iter_data)op_data).fill_curr_coord) + 1]; + fill_coords[0] = + ((H5D_iter_data)op_data).fill_coords[(int)(2 * ((H5D_iter_data)op_data).fill_curr_coord)]; + fill_coords[1] = ((H5D_iter_data)op_data) + .fill_coords[(int)(2 * ((H5D_iter_data)op_data).fill_curr_coord) + 1]; ((H5D_iter_data)op_data).fill_curr_coord++; - if(fill_coords[0] != point[0]) - return(-1); - if(fill_coords[1] != point[1]) - return(-1); + if (fill_coords[0] != point[0]) + return (-1); + if (fill_coords[1] != point[1]) + return (-1); - return(0); + return (0); } } - int[] buf_data = new int[DIM_X*DIM_Y]; + int[] buf_data = new int[DIM_X * DIM_Y]; byte[] fill_value = HDFNativeData.intToByte(SPACE_FILL); // Initialize memory buffer @@ -719,11 +796,12 @@ public class TestH5D { for (int jndx = 0; jndx < DIM_Y; jndx++) { buf_data[(indx * DIM_Y) + jndx] = indx * jndx - jndx; } - byte[] buf_array = HDFNativeData.intToByte(0, DIM_X*DIM_Y, buf_data); + byte[] buf_array = HDFNativeData.intToByte(0, DIM_X * DIM_Y, buf_data); // Fill selection in memory try { - H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid); + H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, + H5dsid); } catch (Exception err) { err.printStackTrace(); @@ -731,19 +809,20 @@ public class TestH5D { } // Initialize the iterator structure - ((H5D_iter_data)iter_data).fill_value = SPACE_FILL; + ((H5D_iter_data)iter_data).fill_value = SPACE_FILL; ((H5D_iter_data)iter_data).fill_curr_coord = 0; // Set the coordinates of the selection - ((H5D_iter_data)iter_data).fill_coords = new long[DIM_X*DIM_Y*SPACE_RANK]; /* Coordinates of selection */ + ((H5D_iter_data)iter_data).fill_coords = + new long[DIM_X * DIM_Y * SPACE_RANK]; /* Coordinates of selection */ for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) { - ((H5D_iter_data)iter_data).fill_coords[2*(indx * DIM_Y + jndx)] = indx; - ((H5D_iter_data)iter_data).fill_coords[2*(indx * DIM_Y + jndx) + 1] = jndx; + ((H5D_iter_data)iter_data).fill_coords[2 * (indx * DIM_Y + jndx)] = indx; + ((H5D_iter_data)iter_data).fill_coords[2 * (indx * DIM_Y + jndx) + 1] = jndx; } /* end for */ // Iterate through selection, verifying correct data H5D_iterate_cb iter_cb = new H5D_iter_callback(); - int op_status = -1; + int op_status = -1; try { op_status = H5.H5Diterate(buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid, iter_cb, iter_data); } @@ -755,47 +834,51 @@ public class TestH5D { } @Test - public void testH5Diterate_write() { + public void testH5Diterate_write() + { final int SPACE_RANK = 2; final int SPACE_FILL = 254; class H5D_iter_data implements H5D_iterate_t { - public int fill_value; /* The fill value to check */ - public long fill_curr_coord; /* Current coordinate to examine */ - public long[] fill_coords; /* Pointer to selection's coordinates */ + public int fill_value; /* The fill value to check */ + public long fill_curr_coord; /* Current coordinate to examine */ + public long[] fill_coords; /* Pointer to selection's coordinates */ } H5D_iterate_t iter_data = new H5D_iter_data(); class H5D_iter_callback implements H5D_iterate_cb { - public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_iterate_t op_data) { - //Check value in current buffer location + public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_iterate_t op_data) + { + // Check value in current buffer location int element = HDFNativeData.byteToInt(elem_buf, 0); - if(element != ((H5D_iter_data)op_data).fill_value) + if (element != ((H5D_iter_data)op_data).fill_value) return -1; - //Check number of dimensions - if(ndim != SPACE_RANK) - return(-1); - //Check Coordinates + // Check number of dimensions + if (ndim != SPACE_RANK) + return (-1); + // Check Coordinates long[] fill_coords = new long[2]; - fill_coords[0] = ((H5D_iter_data)op_data).fill_coords[(int) (2 * ((H5D_iter_data)op_data).fill_curr_coord)]; - fill_coords[1] = ((H5D_iter_data)op_data).fill_coords[(int) (2 * ((H5D_iter_data)op_data).fill_curr_coord) + 1]; + fill_coords[0] = + ((H5D_iter_data)op_data).fill_coords[(int)(2 * ((H5D_iter_data)op_data).fill_curr_coord)]; + fill_coords[1] = ((H5D_iter_data)op_data) + .fill_coords[(int)(2 * ((H5D_iter_data)op_data).fill_curr_coord) + 1]; ((H5D_iter_data)op_data).fill_curr_coord++; - if(fill_coords[0] != point[0]) - return(-1); - if(fill_coords[1] != point[1]) - return(-1); + if (fill_coords[0] != point[0]) + return (-1); + if (fill_coords[1] != point[1]) + return (-1); element -= 128; byte[] new_elembuf = HDFNativeData.intToByte(element); - elem_buf[0] = new_elembuf[0]; - elem_buf[1] = new_elembuf[1]; - elem_buf[2] = new_elembuf[2]; - elem_buf[3] = new_elembuf[3]; - return(0); + elem_buf[0] = new_elembuf[0]; + elem_buf[1] = new_elembuf[1]; + elem_buf[2] = new_elembuf[2]; + elem_buf[3] = new_elembuf[3]; + return (0); } } - int[] buf_data = new int[DIM_X*DIM_Y]; + int[] buf_data = new int[DIM_X * DIM_Y]; byte[] fill_value = HDFNativeData.intToByte(SPACE_FILL); // Initialize memory buffer @@ -803,11 +886,12 @@ public class TestH5D { for (int jndx = 0; jndx < DIM_Y; jndx++) { buf_data[(indx * DIM_Y) + jndx] = indx * jndx - jndx; } - byte[] buf_array = HDFNativeData.intToByte(0, DIM_X*DIM_Y, buf_data); + byte[] buf_array = HDFNativeData.intToByte(0, DIM_X * DIM_Y, buf_data); // Fill selection in memory try { - H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid); + H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, + H5dsid); } catch (Exception err) { err.printStackTrace(); @@ -815,19 +899,20 @@ public class TestH5D { } // Initialize the iterator structure - ((H5D_iter_data)iter_data).fill_value = SPACE_FILL; + ((H5D_iter_data)iter_data).fill_value = SPACE_FILL; ((H5D_iter_data)iter_data).fill_curr_coord = 0; // Set the coordinates of the selection - ((H5D_iter_data)iter_data).fill_coords = new long[DIM_X*DIM_Y*SPACE_RANK]; /* Coordinates of selection */ + ((H5D_iter_data)iter_data).fill_coords = + new long[DIM_X * DIM_Y * SPACE_RANK]; /* Coordinates of selection */ for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) { - ((H5D_iter_data)iter_data).fill_coords[2*(indx * DIM_Y + jndx)] = indx; - ((H5D_iter_data)iter_data).fill_coords[2*(indx * DIM_Y + jndx) + 1] = jndx; + ((H5D_iter_data)iter_data).fill_coords[2 * (indx * DIM_Y + jndx)] = indx; + ((H5D_iter_data)iter_data).fill_coords[2 * (indx * DIM_Y + jndx) + 1] = jndx; } /* end for */ // Iterate through selection, verifying correct data H5D_iterate_cb iter_cb = new H5D_iter_callback(); - int op_status = -1; + int op_status = -1; try { op_status = H5.H5Diterate(buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid, iter_cb, iter_data); } @@ -842,29 +927,27 @@ public class TestH5D { // Verify memory buffer the hard way for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) - assertTrue("H5.H5Diterate: [" + indx+","+jndx + "] "+buf_data[(indx * DIM_Y) + jndx], buf_data[(indx * DIM_Y) + jndx] == 126); + assertTrue("H5.H5Diterate: [" + indx + "," + jndx + "] " + buf_data[(indx * DIM_Y) + jndx], + buf_data[(indx * DIM_Y) + jndx] == 126); } @Test - public void testH5Dvlen_get_buf_size() { - String[] str_data = { "Parting", "is such", "sweet", "sorrow.", - "Testing", "one", "two", "three.", - "Dog,", "man's", "best", "friend.", - "Diamonds", "are", "a", "girls!", - "S A", "T U R", "D A Y", "night", - "That's", "all", "folks", "!!!" }; - long vl_size = -1; /* Number of bytes used */ + public void testH5Dvlen_get_buf_size() + { + String[] str_data = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.", + "Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!", + "S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"}; + long vl_size = -1; /* Number of bytes used */ long str_data_bytes = 0; for (int idx = 0; idx < str_data.length; idx++) - str_data_bytes += str_data[idx].length() + 1; //Account for terminating null + str_data_bytes += str_data[idx].length() + 1; // Account for terminating null _createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); try { if ((H5did >= 0) && (H5dtid >= 0)) - H5.H5Dwrite_VLStrings(H5did, H5dtid, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, str_data); + H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, str_data); } catch (Exception e) { e.printStackTrace(); @@ -879,63 +962,55 @@ public class TestH5D { } @Test(expected = IllegalArgumentException.class) - public void testH5Dvlen_read_invalid_buffer() throws Throwable { - String[] str_data = { "Parting", "is such", "sweet", "sorrow.", - "Testing", "one", "two", "three.", - "Dog,", "man's", "best", "friend.", - "Diamonds", "are", "a", "girls!", - "S A", "T U R", "D A Y", "night", - "That's", "all", "folks", "!!!" }; - byte[] read_data = new byte[512]; + public void testH5Dvlen_read_invalid_buffer() throws Throwable + { + String[] str_data = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.", + "Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!", + "S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"}; + byte[] read_data = new byte[512]; _createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); try { - H5.H5Dwrite_VLStrings(H5did, H5dtid, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, str_data); + H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, str_data); } catch (Exception e) { e.printStackTrace(); } - H5.H5Dread(H5did, H5dtid, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, read_data); + H5.H5Dread(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, + read_data); } @Test - public void testH5Dvlen_write_read() { - String[] str_wdata = { "Parting", "is such", "sweet", "sorrow.", - "Testing", "one", "two", "three.", - "Dog,", "man's", "best", "friend.", - "Diamonds", "are", "a", "girls!", - "S A", "T U R", "D A Y", "night", - "That's", "all", "folks", "!!!" }; + public void testH5Dvlen_write_read() + { + String[] str_wdata = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.", + "Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!", + "S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"}; String[] str_rdata = new String[DIM_X * DIM_Y]; _createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); try { if ((H5did >= 0) && (H5dtid >= 0)) - H5.H5Dwrite_VLStrings(H5did, H5dtid, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, str_wdata); + H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, str_wdata); } catch (Exception e) { e.printStackTrace(); } try { if ((H5did >= 0) && (H5dtid >= 0)) - H5.H5Dread_VLStrings(H5did, H5dtid, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, str_rdata); + H5.H5Dread_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, str_rdata); } catch (Exception e) { e.printStackTrace(); } for (int v = 0; v < DIM_X * DIM_Y; v++) - assertTrue("testH5Dvlen_write_read " + str_wdata[v] + " == " + str_rdata[v], str_wdata[v] == str_wdata[v]); + assertTrue("testH5Dvlen_write_read " + str_wdata[v] + " == " + str_rdata[v], + str_wdata[v] == str_wdata[v]); } - } diff --git a/java/test/TestH5Dparams.java b/java/test/TestH5Dparams.java index 3661139..e42e10b 100644 --- a/java/test/TestH5Dparams.java +++ b/java/test/TestH5Dparams.java @@ -13,6 +13,7 @@ package test; import static org.junit.Assert.assertTrue; + import hdf.hdf5lib.H5; import hdf.hdf5lib.exceptions.HDF5LibraryException; @@ -23,108 +24,128 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Dparams { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); @Before - public void checkOpenIDs() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void checkOpenIDs() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @After - public void nextTestName() { + public void nextTestName() + { System.out.println(); } - @Test//(expected = HDF5LibraryException.class) - public void testH5Dclose_invalid() throws Throwable { + @Test //(expected = HDF5LibraryException.class) + public void testH5Dclose_invalid() throws Throwable + { long did = H5.H5Dclose(-1); assertTrue(did == 0); } @Test(expected = NullPointerException.class) - public void testH5Dcreate_null() throws Throwable { + public void testH5Dcreate_null() throws Throwable + { H5.H5Dcreate(-1, null, 0, 0, 0, 0, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Dcreate_invalid() throws Throwable { + public void testH5Dcreate_invalid() throws Throwable + { H5.H5Dcreate(-1, "Bogus", -1, -1, -1, -1, -1); } @Test(expected = HDF5LibraryException.class) - public void testH5Dcreate_anon_invalid() throws Throwable { + public void testH5Dcreate_anon_invalid() throws Throwable + { H5.H5Dcreate_anon(-1, -1, -1, -1, -1); } @Test(expected = HDF5LibraryException.class) - public void testH5Dget_access_plist_invalid() throws Throwable { + public void testH5Dget_access_plist_invalid() throws Throwable + { H5.H5Dget_access_plist(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Dget_create_plist_invalid() throws Throwable { + public void testH5Dget_create_plist_invalid() throws Throwable + { H5.H5Dget_create_plist(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Dget_offset_invalid() throws Throwable { + public void testH5Dget_offset_invalid() throws Throwable + { H5.H5Dget_offset(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Dget_space_invalid() throws Throwable { + public void testH5Dget_space_invalid() throws Throwable + { H5.H5Dget_space(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Dget_type_invalid() throws Throwable { + public void testH5Dget_type_invalid() throws Throwable + { H5.H5Dget_type(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Dget_space_status_invalid() throws Throwable { + public void testH5Dget_space_status_invalid() throws Throwable + { int status = H5.H5Dget_space_status(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Dset_extent_status_invalid() throws Throwable { + public void testH5Dset_extent_status_invalid() throws Throwable + { long[] size = new long[2]; H5.H5Dset_extent(-1, size); } @Test(expected = NullPointerException.class) - public void testH5Dset_extent_status_null() throws Throwable { + public void testH5Dset_extent_status_null() throws Throwable + { H5.H5Dset_extent(-1, null); } @Test(expected = NullPointerException.class) - public void testH5Dopen_null() throws Throwable { + public void testH5Dopen_null() throws Throwable + { H5.H5Dopen(-1, null, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Dopen_invalid() throws Throwable { + public void testH5Dopen_invalid() throws Throwable + { H5.H5Dopen(-1, "Bogus", 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Dvlen_get_buf_size_invalid() throws Throwable { + public void testH5Dvlen_get_buf_size_invalid() throws Throwable + { H5.H5Dvlen_get_buf_size(-1, -1, -1); } @Test(expected = IllegalArgumentException.class) - public void testH5Dget_storage_size_invalid() throws Throwable { + public void testH5Dget_storage_size_invalid() throws Throwable + { H5.H5Dget_storage_size(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Dflush_invalid() throws Throwable { + public void testH5Dflush_invalid() throws Throwable + { H5.H5Dflush(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Drefresh_invalid() throws Throwable { + public void testH5Drefresh_invalid() throws Throwable + { H5.H5Drefresh(-1); } - } diff --git a/java/test/TestH5Dplist.java b/java/test/TestH5Dplist.java index 774b9dd..b9e97f4 100644 --- a/java/test/TestH5Dplist.java +++ b/java/test/TestH5Dplist.java @@ -30,35 +30,42 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Dplist { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "testDp.h5"; - private static final int DIM_X = 4; - private static final int DIM_Y = 7; - private static final int EDIM_X = 6; - private static final int EDIM_Y = 10; - private static final int CHUNK_X = 4; - private static final int CHUNK_Y = 4; - private static final int NDIMS = 2; - private static final int FILLVAL = 99; - private static final int RANK = 2; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - long H5dcpl_id = HDF5Constants.H5I_INVALID_HID; - long[] H5dims = { DIM_X, DIM_Y }; - long[] H5extdims = { EDIM_X, EDIM_Y }; - long[] H5chunk_dims = { CHUNK_X, CHUNK_Y }; - long[] H5maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED }; - - private final void _deleteFile(String filename) { + private static final int DIM_X = 4; + private static final int DIM_Y = 7; + private static final int EDIM_X = 6; + private static final int EDIM_Y = 10; + private static final int CHUNK_X = 4; + private static final int CHUNK_Y = 4; + private static final int NDIMS = 2; + private static final int FILLVAL = 99; + private static final int RANK = 2; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + long H5dcpl_id = HDF5Constants.H5I_INVALID_HID; + long[] H5dims = {DIM_X, DIM_Y}; + long[] H5extdims = {EDIM_X, EDIM_Y}; + long[] H5chunk_dims = {CHUNK_X, CHUNK_Y}; + long[] H5maxdims = {HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED}; + + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } - private final void _createPDataset(long fid, long dsid, String name, long dcpl_val) { + private final void _createPDataset(long fid, long dsid, String name, long dcpl_val) + { try { H5dcpl_id = H5.H5Pcreate(dcpl_val); } @@ -78,7 +85,7 @@ public class TestH5Dplist { // Set the fill value for the dataset try { - int[] fill_value = { FILLVAL }; + int[] fill_value = {FILLVAL}; H5.H5Pset_fill_value(H5dcpl_id, HDF5Constants.H5T_NATIVE_INT, fill_value); } catch (Exception e) { @@ -98,136 +105,151 @@ public class TestH5Dplist { _createDataset(H5fid, H5dsid, "dset", H5dcpl_id, HDF5Constants.H5P_DEFAULT); } - private final void _createDataset(long fid, long dsid, String name, long dcpl, long dapl) { + private final void _createDataset(long fid, long dsid, String name, long dcpl, long dapl) + { try { - H5did = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, dcpl, dapl); + H5did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + dcpl, dapl); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Dcreate: " + err); } - assertTrue("TestH5Dplist._createDataset: ",H5did > 0); + assertTrue("TestH5Dplist._createDataset: ", H5did > 0); } @Before - public void createH5file() throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5dsid = H5.H5Screate_simple(RANK, H5dims, H5maxdims); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Dplist.createH5file: " + err); } - assertTrue("TestH5Dplist.createH5file: H5.H5Fcreate: ",H5fid > 0); - assertTrue("TestH5Dplist.createH5file: H5.H5Screate_simple: ",H5dsid > 0); + assertTrue("TestH5Dplist.createH5file: H5.H5Fcreate: ", H5fid > 0); + assertTrue("TestH5Dplist.createH5file: H5.H5Screate_simple: ", H5dsid > 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5dcpl_id >= 0) - try {H5.H5Pclose(H5dcpl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(H5dcpl_id); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } _deleteFile(H5_FILE); System.out.println(); } - @Test - public void testH5Dset_extent() { - int[][] write_dset_data = new int[DIM_X][DIM_Y]; - int[][] read_dset_data = new int[DIM_X][DIM_Y]; - int[][] extend_dset_data = new int[EDIM_X][EDIM_Y]; - - // Initialize the dataset. - for (int indx = 0; indx < DIM_X; indx++) - for (int jndx = 0; jndx < DIM_Y; jndx++) - write_dset_data[indx][jndx] = indx * jndx - jndx; - - _createPDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DATASET_CREATE); - - // Read values from the dataset, which has not been written to yet. - try { - H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, read_dset_data); - } - catch (Exception e) { - e.printStackTrace(); - } - assertTrue("testH5Dset_extent - H5.H5Dread: ", read_dset_data[0][0] == 99); - - // Write the data to the dataset. - try { - H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, write_dset_data); - } - catch (Exception e) { - e.printStackTrace(); - } - - // Read the data back. - try { - H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, read_dset_data); - } - catch (Exception e) { - e.printStackTrace(); - } - assertTrue("testH5Dset_extent - H5.H5Dread: ", read_dset_data[3][6] == 12); - - // Extend the dataset. - try { - H5.H5Dset_extent(H5did, H5extdims); - } - catch (Exception e) { - e.printStackTrace(); - } - - // Read from the extended dataset. - try { - H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, extend_dset_data); - } - catch (Exception e) { - e.printStackTrace(); - } - assertTrue("testH5Dset_extent - H5.H5Dread: ", extend_dset_data[3][6] == 12); - assertTrue("testH5Dset_extent - H5.H5Dread: ", extend_dset_data[4][8] == 99); - } - - @Test - public void testH5P_dset_no_attrs_hint() { - boolean ret_val_id = true; - - _createPDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DATASET_CREATE); - - try { - ret_val_id = H5.H5Pget_dset_no_attrs_hint(H5dcpl_id); - assertFalse("H5P_dset_no_attrs_hint", ret_val_id); - H5.H5Pset_dset_no_attrs_hint(H5dcpl_id, true); - ret_val_id = H5.H5Pget_dset_no_attrs_hint(H5dcpl_id); - assertTrue("H5P_dset_no_attrs_hint", ret_val_id); - } - catch (Throwable err) { - err.printStackTrace(); - fail("H5P_dset_no_attrs_hint: " + err); - } - } + @Test + public void testH5Dset_extent() + { + int[][] write_dset_data = new int[DIM_X][DIM_Y]; + int[][] read_dset_data = new int[DIM_X][DIM_Y]; + int[][] extend_dset_data = new int[EDIM_X][EDIM_Y]; + // Initialize the dataset. + for (int indx = 0; indx < DIM_X; indx++) + for (int jndx = 0; jndx < DIM_Y; jndx++) + write_dset_data[indx][jndx] = indx * jndx - jndx; + + _createPDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DATASET_CREATE); + + // Read values from the dataset, which has not been written to yet. + try { + H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, read_dset_data); + } + catch (Exception e) { + e.printStackTrace(); + } + assertTrue("testH5Dset_extent - H5.H5Dread: ", read_dset_data[0][0] == 99); + + // Write the data to the dataset. + try { + H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, write_dset_data); + } + catch (Exception e) { + e.printStackTrace(); + } + + // Read the data back. + try { + H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, read_dset_data); + } + catch (Exception e) { + e.printStackTrace(); + } + assertTrue("testH5Dset_extent - H5.H5Dread: ", read_dset_data[3][6] == 12); + + // Extend the dataset. + try { + H5.H5Dset_extent(H5did, H5extdims); + } + catch (Exception e) { + e.printStackTrace(); + } + + // Read from the extended dataset. + try { + H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, extend_dset_data); + } + catch (Exception e) { + e.printStackTrace(); + } + assertTrue("testH5Dset_extent - H5.H5Dread: ", extend_dset_data[3][6] == 12); + assertTrue("testH5Dset_extent - H5.H5Dread: ", extend_dset_data[4][8] == 99); + } + + @Test + public void testH5P_dset_no_attrs_hint() + { + boolean ret_val_id = true; + + _createPDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DATASET_CREATE); + + try { + ret_val_id = H5.H5Pget_dset_no_attrs_hint(H5dcpl_id); + assertFalse("H5P_dset_no_attrs_hint", ret_val_id); + H5.H5Pset_dset_no_attrs_hint(H5dcpl_id, true); + ret_val_id = H5.H5Pget_dset_no_attrs_hint(H5dcpl_id); + assertTrue("H5P_dset_no_attrs_hint", ret_val_id); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5P_dset_no_attrs_hint: " + err); + } + } } diff --git a/java/test/TestH5Drw.java b/java/test/TestH5Drw.java index 69fb9d7..b18bed7 100644 --- a/java/test/TestH5Drw.java +++ b/java/test/TestH5Drw.java @@ -33,77 +33,97 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Drw { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_INTS_FILE = "tintsattrs.h5"; private static final String H5_FLTS_FILE = "tfloatsattrs.h5"; - private static final int DIM_X = 8; - private static final int DIM8_Y = 8; - private static final int DIM16_Y = 16; - private static final int DIM32_Y = 32; - private static final int DIM64_Y = 64; - private static final int DIM128_Y = 128; - private static final String DATASETU08 = "DU08BITS"; - private static final String DATASETS08 = "DS08BITS"; - private static final String DATASETU16 = "DU16BITS"; - private static final String DATASETS16 = "DS16BITS"; - private static final String DATASETU32 = "DU32BITS"; - private static final String DATASETS32 = "DS32BITS"; - private static final String DATASETU64 = "DU64BITS"; - private static final String DATASETS64 = "DS64BITS"; - private static final String DATASETF32 = "DS32BITS"; - private static final String DATASETF64 = "DS64BITS"; - private static final String DATASETF128 = "DS128BITS"; - private static final int RANK = 2; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - - private final void _closeH5file() throws HDF5LibraryException { + private static final int DIM_X = 8; + private static final int DIM8_Y = 8; + private static final int DIM16_Y = 16; + private static final int DIM32_Y = 32; + private static final int DIM64_Y = 64; + private static final int DIM128_Y = 128; + private static final String DATASETU08 = "DU08BITS"; + private static final String DATASETS08 = "DS08BITS"; + private static final String DATASETU16 = "DU16BITS"; + private static final String DATASETS16 = "DS16BITS"; + private static final String DATASETU32 = "DU32BITS"; + private static final String DATASETS32 = "DS32BITS"; + private static final String DATASETU64 = "DU64BITS"; + private static final String DATASETS64 = "DS64BITS"; + private static final String DATASETF32 = "DS32BITS"; + private static final String DATASETF64 = "DS64BITS"; + private static final String DATASETF128 = "DS128BITS"; + private static final int RANK = 2; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + + private final void _closeH5file() throws HDF5LibraryException + { if (H5did >= 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } - public void openH5file(String filename, String dsetname) { - try { - H5fid = H5.H5Fopen(filename, - HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5Drw._openH5file: " + err); - } - assertTrue("TestH5Drw._openH5file: H5.H5Fopen: ", H5fid >= 0); - try { - H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5Drw._openH5file: " + err); - } - assertTrue("TestH5Drw._openH5file: H5.H5Dopen: ", H5did >= 0); + public void openH5file(String filename, String dsetname) + { + try { + H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5Drw._openH5file: " + err); + } + assertTrue("TestH5Drw._openH5file: H5.H5Fopen: ", H5fid >= 0); + try { + H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5Drw._openH5file: " + err); + } + assertTrue("TestH5Drw._openH5file: H5.H5Dopen: ", H5did >= 0); } @After - public void closeH5file() throws HDF5LibraryException { + public void closeH5file() throws HDF5LibraryException + { if (H5did >= 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } H5fid = HDF5Constants.H5I_INVALID_HID; H5did = HDF5Constants.H5I_INVALID_HID; System.out.println(); } @Before - public void verifyCount() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0); + public void verifyCount() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @Test - public void testH5Dread_8bit_ints() { + public void testH5Dread_8bit_ints() + { byte[][] dset_data = new byte[DIM_X][DIM8_Y]; try { @@ -117,7 +137,7 @@ public class TestH5Drw { // Read data. try { H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_UINT8, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + HDF5Constants.H5P_DEFAULT, dset_data); } catch (Exception err) { err.printStackTrace(); @@ -144,7 +164,7 @@ public class TestH5Drw { // Read data. try { H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT8, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + HDF5Constants.H5P_DEFAULT, dset_data); } catch (Exception err) { err.printStackTrace(); @@ -153,7 +173,8 @@ public class TestH5Drw { } @Test - public void testH5Dread_16bit_ints() { + public void testH5Dread_16bit_ints() + { short[][] dset_data = new short[DIM_X][DIM16_Y]; try { @@ -167,7 +188,7 @@ public class TestH5Drw { // Read data. try { H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_UINT16, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + HDF5Constants.H5P_DEFAULT, dset_data); } catch (Exception err) { err.printStackTrace(); @@ -194,7 +215,7 @@ public class TestH5Drw { // Read data. try { H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT16, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + HDF5Constants.H5P_DEFAULT, dset_data); } catch (Exception err) { err.printStackTrace(); @@ -203,7 +224,8 @@ public class TestH5Drw { } @Test - public void testH5Dread_32bit_ints() { + public void testH5Dread_32bit_ints() + { int[][] dset_data = new int[DIM_X][DIM16_Y]; try { @@ -217,7 +239,7 @@ public class TestH5Drw { // Read data. try { H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_UINT32, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + HDF5Constants.H5P_DEFAULT, dset_data); } catch (Exception err) { err.printStackTrace(); @@ -244,7 +266,7 @@ public class TestH5Drw { // Read data. try { H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT32, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + HDF5Constants.H5P_DEFAULT, dset_data); } catch (Exception err) { err.printStackTrace(); @@ -253,7 +275,8 @@ public class TestH5Drw { } @Test - public void testH5Dread_64bit_ints() { + public void testH5Dread_64bit_ints() + { long[][] dset_data = new long[DIM_X][DIM64_Y]; try { @@ -267,7 +290,7 @@ public class TestH5Drw { // Read data. try { H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_UINT64, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + HDF5Constants.H5P_DEFAULT, dset_data); } catch (Exception err) { err.printStackTrace(); @@ -294,7 +317,7 @@ public class TestH5Drw { // Read data. try { H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT64, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + HDF5Constants.H5P_DEFAULT, dset_data); } catch (Exception err) { err.printStackTrace(); @@ -303,7 +326,8 @@ public class TestH5Drw { } @Test - public void testH5Dread_32bit_floats() { + public void testH5Dread_32bit_floats() + { float[][] dset_data = new float[DIM_X][DIM32_Y]; try { @@ -317,7 +341,7 @@ public class TestH5Drw { // Read data. try { H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_FLOAT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + HDF5Constants.H5P_DEFAULT, dset_data); } catch (Exception err) { err.printStackTrace(); @@ -328,7 +352,8 @@ public class TestH5Drw { } @Test - public void testH5Dread_64bit_floats() { + public void testH5Dread_64bit_floats() + { double[][] dset_data = new double[DIM_X][DIM64_Y]; try { @@ -342,7 +367,7 @@ public class TestH5Drw { // Read data. try { H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + HDF5Constants.H5P_DEFAULT, dset_data); } catch (Exception err) { err.printStackTrace(); @@ -353,7 +378,8 @@ public class TestH5Drw { } @Test - public void testH5Dread_128bit_floats() { + public void testH5Dread_128bit_floats() + { byte[][][] dset_data = new byte[DIM_X][DIM128_Y][8]; try { @@ -367,12 +393,11 @@ public class TestH5Drw { // Read data. try { H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_LDOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + HDF5Constants.H5P_DEFAULT, dset_data); } catch (Exception err) { err.printStackTrace(); fail("testH5Dread_128bit_floats: H5Dread: " + err); } } - } diff --git a/java/test/TestH5E.java b/java/test/TestH5E.java index cad0a06..bdd6802 100644 --- a/java/test/TestH5E.java +++ b/java/test/TestH5E.java @@ -22,9 +22,9 @@ import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.callbacks.H5E_walk_cb; import hdf.hdf5lib.callbacks.H5E_walk_t; +import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5E_error2_t; import org.junit.After; @@ -35,20 +35,22 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5E { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); long hdf_java_classid = -1; - long current_stackid = -1; + long current_stackid = -1; @Before - public void H5Eget_stack_class() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void H5Eget_stack_class() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); hdf_java_classid = -1; try { hdf_java_classid = H5.H5Eregister_class("HDF-Java-Error", "hdf-java", "2.5"); - current_stackid = H5.H5Eget_current_stack(); + current_stackid = H5.H5Eget_current_stack(); } catch (Throwable err) { err.printStackTrace(); @@ -57,7 +59,8 @@ public class TestH5E { } @After - public void H5Erestore_stack_class() { + public void H5Erestore_stack_class() + { try { H5.H5Eunregister_class(hdf_java_classid); hdf_java_classid = -1; @@ -72,14 +75,15 @@ public class TestH5E { } @Test - public void testH5Eget_msg_major() { + public void testH5Eget_msg_major() + { try { H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (HDF5LibraryException hdferr) { - long errnum = hdferr.getMajorErrorNumber(); - int[] error_msg_type = { HDF5Constants.H5E_MAJOR }; - String msg = null; + long errnum = hdferr.getMajorErrorNumber(); + int[] error_msg_type = {HDF5Constants.H5E_MAJOR}; + String msg = null; try { msg = H5.H5Eget_msg(errnum, error_msg_type); @@ -92,11 +96,11 @@ public class TestH5E { assertEquals("H5.H5Eget_msg: ", HDF5Constants.H5E_MAJOR, error_msg_type[0]); /* - * If HDF5_VOL_CONNECTOR is set, this might not be the - * native connector and the error string might be different. - * Only check for the specific error message if the native - * connector is being used. - */ + * If HDF5_VOL_CONNECTOR is set, this might not be the + * native connector and the error string might be different. + * Only check for the specific error message if the native + * connector is being used. + */ String connector = System.getenv("HDF5_VOL_CONNECTOR"); if (connector == null) assertTrue("H5.H5Eget_msg: ", msg.contains("File accessibility")); @@ -108,14 +112,15 @@ public class TestH5E { } @Test - public void testH5Eget_msg_minor() { + public void testH5Eget_msg_minor() + { try { H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (HDF5LibraryException hdferr) { - long errnum = hdferr.getMinorErrorNumber(); - int[] error_msg_type = { HDF5Constants.H5E_MINOR }; - String msg = null; + long errnum = hdferr.getMinorErrorNumber(); + int[] error_msg_type = {HDF5Constants.H5E_MINOR}; + String msg = null; try { msg = H5.H5Eget_msg(errnum, error_msg_type); @@ -128,11 +133,11 @@ public class TestH5E { assertEquals("H5.H5Eget_msg: ", HDF5Constants.H5E_MINOR, error_msg_type[0]); /* - * If HDF5_VOL_CONNECTOR is set, this might not be the - * native connector and the error string might be different. - * Only check for the specific error message if the native - * connector is being used. - */ + * If HDF5_VOL_CONNECTOR is set, this might not be the + * native connector and the error string might be different. + * Only check for the specific error message if the native + * connector is being used. + */ String connector = System.getenv("HDF5_VOL_CONNECTOR"); if (connector == null) assertTrue("H5.H5Eget_msg: ", msg.contains("Unable to open file")); @@ -144,9 +149,10 @@ public class TestH5E { } @Test - public void testH5Epop() { + public void testH5Epop() + { - long num_msg = -1; + long num_msg = -1; long saved_num_msg = -1; try { @@ -213,13 +219,14 @@ public class TestH5E { } @Test - public void testH5Epush() { - String err_func = "testH5Epush"; - String err_msg = "Error message"; - long estack_id = -1; - long maj_err_id = -1; - long min_err_id = -1; - long num_msg = -1; + public void testH5Epush() + { + String err_func = "testH5Epush"; + String err_msg = "Error message"; + long estack_id = -1; + long maj_err_id = -1; + long min_err_id = -1; + long num_msg = -1; try { try { @@ -231,7 +238,8 @@ public class TestH5E { fail("testH5Epush: H5.H5Ecreate_msg_major: " + err); } try { - min_err_id = H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MINOR, "Error in Test Function"); + min_err_id = + H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MINOR, "Error in Test Function"); assertFalse("H5.H5Ecreate_msg_minor: " + min_err_id, min_err_id < 0); } catch (Throwable err) { @@ -257,7 +265,8 @@ public class TestH5E { fail("testH5Epush: H5.H5Eget_num: " + err); } - H5.H5Epush(estack_id, "TestH5E.java", err_func, 354, hdf_java_classid, maj_err_id, min_err_id, err_msg); + H5.H5Epush(estack_id, "TestH5E.java", err_func, 354, hdf_java_classid, maj_err_id, min_err_id, + err_msg); try { num_msg = H5.H5Eget_num(estack_id); @@ -274,24 +283,38 @@ public class TestH5E { } finally { if (estack_id >= 0) - try {H5.H5Eclose_stack(estack_id);} catch (Exception ex) {} + try { + H5.H5Eclose_stack(estack_id); + } + catch (Exception ex) { + } if (maj_err_id >= 0) - try {H5.H5Eclose_msg(maj_err_id);} catch (Exception ex) {} + try { + H5.H5Eclose_msg(maj_err_id); + } + catch (Exception ex) { + } if (min_err_id >= 0) - try {H5.H5Eclose_msg(min_err_id);} catch (Exception ex) {} + try { + H5.H5Eclose_msg(min_err_id); + } + catch (Exception ex) { + } } } /* end test_create() */ @Test - public void testH5Ewalk() { + public void testH5Ewalk() + { class wdata { - public String err_desc = null; + public String err_desc = null; public String func_name = null; - public int line = -1; - wdata(String desc, String func, int lineno) { - this.err_desc = new String(desc); + public int line = -1; + wdata(String desc, String func, int lineno) + { + this.err_desc = new String(desc); this.func_name = new String(func); - this.line = lineno; + this.line = lineno; } } class H5E_walk_data implements H5E_walk_t { @@ -299,14 +322,15 @@ public class TestH5E { } H5E_walk_t walk_data = new H5E_walk_data(); class H5E_walk_callback implements H5E_walk_cb { - public int callback(int nidx, H5E_error2_t info, H5E_walk_t op_data) { + public int callback(int nidx, H5E_error2_t info, H5E_walk_t op_data) + { wdata wd = new wdata(info.desc, info.func_name, info.line); ((H5E_walk_data)op_data).walkdata.add(wd); return 0; } } H5E_walk_cb walk_cb = new H5E_walk_callback(); - long num_msg = -1; + long num_msg = -1; try { H5.H5Eset_current_stack(current_stackid); @@ -346,9 +370,8 @@ public class TestH5E { err.printStackTrace(); fail("testH5Ewalk:H5Ewalk2 " + err); } - assertFalse("testH5Ewalk:H5Ewalk2 ",((H5E_walk_data)walk_data).walkdata.isEmpty()); - assertTrue("testH5Ewalk:H5Ewalk2 "+((H5E_walk_data)walk_data).walkdata.size(),((H5E_walk_data)walk_data).walkdata.size() > 0); + assertFalse("testH5Ewalk:H5Ewalk2 ", ((H5E_walk_data)walk_data).walkdata.isEmpty()); + assertTrue("testH5Ewalk:H5Ewalk2 " + ((H5E_walk_data)walk_data).walkdata.size(), + ((H5E_walk_data)walk_data).walkdata.size() > 0); } - } - diff --git a/java/test/TestH5Edefault.java b/java/test/TestH5Edefault.java index 9e93cea..c412cf2 100644 --- a/java/test/TestH5Edefault.java +++ b/java/test/TestH5Edefault.java @@ -15,25 +15,28 @@ package test; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; + import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5LibraryException; import org.junit.After; import org.junit.Before; +import org.junit.Ignore; import org.junit.Rule; import org.junit.Test; -import org.junit.Ignore; import org.junit.rules.TestName; public class TestH5Edefault { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); public static final int ERRSTACK_CNT = 6; @Before - public void H5Eset_default_stack() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void H5Eset_default_stack() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { @@ -46,23 +49,26 @@ public class TestH5Edefault { } } @After - public void nextTestName() { + public void nextTestName() + { System.out.println(); } @Test(expected = IllegalArgumentException.class) - public void testH5Eprint2_invalid_classid() throws Throwable { + public void testH5Eprint2_invalid_classid() throws Throwable + { H5.H5Eprint2(-1, null); } @Ignore - public void testH5Eprint() { + public void testH5Eprint() + { /* - * If HDF5_VOL_CONNECTOR is set, this might not be the - * native connector and the error stack might be different. - * Only check for the specific error stack if the native - * connector is being used. - */ + * If HDF5_VOL_CONNECTOR is set, this might not be the + * native connector and the error stack might be different. + * Only check for the specific error stack if the native + * connector is being used. + */ String connector = System.getenv("HDF5_VOL_CONNECTOR"); if (connector == null) { try { @@ -81,19 +87,20 @@ public class TestH5Edefault { } @Test - public void testH5Eget_current_stack() { - long num_msg = -1; - long num_msg_default = -1; - long saved_num_msg = -1; - long stack_id = -1; + public void testH5Eget_current_stack() + { + long num_msg = -1; + long num_msg_default = -1; + long saved_num_msg = -1; + long stack_id = -1; long stack_id_default = HDF5Constants.H5E_DEFAULT; try { H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { - //default stack id will be different after exception + // default stack id will be different after exception stack_id_default = HDF5Constants.H5E_DEFAULT; - //err.printStackTrace(); //This will clear the error stack + // err.printStackTrace(); //This will clear the error stack } // Verify we have messages on the error stack try { @@ -147,16 +154,17 @@ public class TestH5Edefault { } @Test - public void testH5Eget_current_stack_pop() { - long num_msg = -1; + public void testH5Eget_current_stack_pop() + { + long num_msg = -1; long num_msg_default = -1; - long saved_num_msg = -1; - long stack_id = -1; + long saved_num_msg = -1; + long stack_id = -1; try { H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { - //err.printStackTrace(); //This will clear the error stack + // err.printStackTrace(); //This will clear the error stack } // Verify there are error messages on the stack and save it @@ -179,7 +187,8 @@ public class TestH5Edefault { fail("H5.H5Eget_current_stack: " + err); } assertFalse("H5.H5Eget_current_stack: get_current_stack - " + stack_id, stack_id < 0); - assertFalse("H5.H5Eget_current_stack: get_current_stack - " + stack_id, stack_id == HDF5Constants.H5E_DEFAULT); + assertFalse("H5.H5Eget_current_stack: get_current_stack - " + stack_id, + stack_id == HDF5Constants.H5E_DEFAULT); // Verify the stack is empty try { @@ -206,7 +215,7 @@ public class TestH5Edefault { H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { - //err.printStackTrace(); //This will clear the error stack + // err.printStackTrace(); //This will clear the error stack } // Verify we have a nonzero number of messages and save it @@ -243,37 +252,44 @@ public class TestH5Edefault { } @Test(expected = IllegalArgumentException.class) - public void testH5Eclose_stack_invalid_stackid() throws Throwable { + public void testH5Eclose_stack_invalid_stackid() throws Throwable + { H5.H5Eclose_stack(-1); } @Test(expected = IllegalArgumentException.class) - public void testH5Eget_class_name_invalid_classid() throws Throwable { + public void testH5Eget_class_name_invalid_classid() throws Throwable + { H5.H5Eget_class_name(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Eget_class_name_invalid_classname() throws Throwable { + public void testH5Eget_class_name_invalid_classname() throws Throwable + { H5.H5Eget_class_name(HDF5Constants.H5E_DEFAULT); } @Test(expected = IllegalArgumentException.class) - public void testH5Eclose_msg_invalid_errid() throws Throwable { + public void testH5Eclose_msg_invalid_errid() throws Throwable + { H5.H5Eclose_msg(-1); } @Test(expected = IllegalArgumentException.class) - public void testH5Ecreate_msg_invalid_errid() throws Throwable { + public void testH5Ecreate_msg_invalid_errid() throws Throwable + { H5.H5Ecreate_msg(-1, HDF5Constants.H5E_MAJOR, "null"); } @Test(expected = IllegalArgumentException.class) - public void testH5Eget_msg_invalid_msgid() throws Throwable { + public void testH5Eget_msg_invalid_msgid() throws Throwable + { H5.H5Eget_msg(-1, null); } @Test - public void testH5Ecreate_stack() { + public void testH5Ecreate_stack() + { try { long stack_id = H5.H5Ecreate_stack(); assertTrue("H5.H5Ecreate_stack", stack_id > 0); @@ -286,14 +302,16 @@ public class TestH5Edefault { } @Test(expected = IllegalArgumentException.class) - public void testH5Eset_current_stack_invalid_stkid() throws Throwable { + public void testH5Eset_current_stack_invalid_stkid() throws Throwable + { H5.H5Eset_current_stack(-1); } @Test - public void testH5Eset_current_stack() { - long num_msg = -1; - long stack_id = -1; + public void testH5Eset_current_stack() + { + long num_msg = -1; + long stack_id = -1; long saved_num_msg = -1; // Generate errors on the default stack @@ -301,7 +319,7 @@ public class TestH5Edefault { H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { - //err.printStackTrace(); //This will clear the error stack + // err.printStackTrace(); //This will clear the error stack } // Verify we have a nonzero number of messages and save it @@ -324,7 +342,8 @@ public class TestH5Edefault { fail("H5.H5Eset_current_stack: " + err); } assertFalse("H5.H5Eset_current_stack: get_current_stack - " + stack_id, stack_id < 0); - assertFalse("H5.H5Eset_current_stack: get_current_stack - " + stack_id, stack_id == HDF5Constants.H5E_DEFAULT); + assertFalse("H5.H5Eset_current_stack: get_current_stack - " + stack_id, + stack_id == HDF5Constants.H5E_DEFAULT); // Verify the copy has the same number of messages as the original stack try { @@ -341,7 +360,7 @@ public class TestH5Edefault { H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { - //err.printStackTrace(); //This will clear the error stack + // err.printStackTrace(); //This will clear the error stack } // Verify we have the same number of messages as before @@ -388,13 +407,15 @@ public class TestH5Edefault { } @Test(expected = IllegalArgumentException.class) - public void testH5Epop_invalid_stkid() throws Throwable { + public void testH5Epop_invalid_stkid() throws Throwable + { H5.H5Epop(-1, 0); } @Test - public void testH5Epop() throws Throwable { - long num_msg = -1; + public void testH5Epop() throws Throwable + { + long num_msg = -1; long saved_num_msg = -1; try { H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); @@ -422,28 +443,33 @@ public class TestH5Edefault { } @Test(expected = IllegalArgumentException.class) - public void testH5Epush_invalid_stkid() throws Throwable { + public void testH5Epush_invalid_stkid() throws Throwable + { H5.H5Epush(-1, "Invalid", "Invalid", 0, -1, -1, -1, "Invalid message"); } @Test(expected = NullPointerException.class) - public void testH5Epush_null_name() throws Throwable { - H5.H5Epush(HDF5Constants.H5E_DEFAULT, null, "Invalid", 0, HDF5Constants.H5E_DEFAULT, HDF5Constants.H5E_DEFAULT, HDF5Constants.H5E_DEFAULT, "Invalid message"); + public void testH5Epush_null_name() throws Throwable + { + H5.H5Epush(HDF5Constants.H5E_DEFAULT, null, "Invalid", 0, HDF5Constants.H5E_DEFAULT, + HDF5Constants.H5E_DEFAULT, HDF5Constants.H5E_DEFAULT, "Invalid message"); } @Test(expected = IllegalArgumentException.class) - public void testH5EprintInt_invalid_classid() throws Throwable { + public void testH5EprintInt_invalid_classid() throws Throwable + { H5.H5Eprint2(-1, null); } @Ignore - public void testH5EprintInt() { + public void testH5EprintInt() + { /* - * If HDF5_VOL_CONNECTOR is set, this might not be the - * native connector and the error stack might be different. - * Only check for the specific error stack if the native - * connector is being used. - */ + * If HDF5_VOL_CONNECTOR is set, this might not be the + * native connector and the error stack might be different. + * Only check for the specific error stack if the native + * connector is being used. + */ String connector = System.getenv("HDF5_VOL_CONNECTOR"); if (connector == null) { try { @@ -462,7 +488,8 @@ public class TestH5Edefault { } @Test - public void testH5EclearInt() { + public void testH5EclearInt() + { try { H5.H5Eclear(HDF5Constants.H5E_DEFAULT); } @@ -473,12 +500,14 @@ public class TestH5Edefault { } @Test(expected = IllegalArgumentException.class) - public void testH5Eclear2_invalid_stkid() throws Throwable { + public void testH5Eclear2_invalid_stkid() throws Throwable + { H5.H5Eclear2(-1); } @Test - public void testH5Eclear() { + public void testH5Eclear() + { try { H5.H5Eclear2(HDF5Constants.H5E_DEFAULT); } @@ -489,7 +518,8 @@ public class TestH5Edefault { } @Test - public void testH5Eclear2_with_msg() { + public void testH5Eclear2_with_msg() + { long num_msg = -1; try { H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); @@ -516,12 +546,14 @@ public class TestH5Edefault { } @Test(expected = IllegalArgumentException.class) - public void testH5Eauto_is_v2_invalid_stkid() throws Throwable { + public void testH5Eauto_is_v2_invalid_stkid() throws Throwable + { H5.H5Eauto_is_v2(-1); } @Test - public void testH5Eauto_is_v2() { + public void testH5Eauto_is_v2() + { boolean is_v2 = false; try { is_v2 = H5.H5Eauto_is_v2(HDF5Constants.H5E_DEFAULT); @@ -534,12 +566,14 @@ public class TestH5Edefault { } @Test(expected = IllegalArgumentException.class) - public void testH5Eget_num_invalid_stkid() throws Throwable { + public void testH5Eget_num_invalid_stkid() throws Throwable + { H5.H5Eget_num(-1); } @Test - public void testH5Eget_num() { + public void testH5Eget_num() + { long num_msg = -1; try { num_msg = H5.H5Eget_num(HDF5Constants.H5E_DEFAULT); @@ -552,7 +586,8 @@ public class TestH5Edefault { } @Test - public void testH5Eget_num_with_msg() { + public void testH5Eget_num_with_msg() + { long num_msg = -1; try { H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); @@ -568,6 +603,4 @@ public class TestH5Edefault { } assertTrue("H5.H5Eget_num_with_msg #:" + num_msg, num_msg > 0); } - } - diff --git a/java/test/TestH5Eparams.java b/java/test/TestH5Eparams.java index e55f1fc..4300ae6 100644 --- a/java/test/TestH5Eparams.java +++ b/java/test/TestH5Eparams.java @@ -22,9 +22,9 @@ import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.callbacks.H5E_walk_cb; import hdf.hdf5lib.callbacks.H5E_walk_t; +import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5E_error2_t; import org.junit.After; @@ -35,19 +35,21 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Eparams { - @Rule public TestName testname = new TestName(); - long hdf_java_classid = -1; - long current_stackid = -1; + @Rule + public TestName testname = new TestName(); + long hdf_java_classid = -1; + long current_stackid = -1; @Before - public void H5Eget_stack_class() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void H5Eget_stack_class() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); hdf_java_classid = -1; try { hdf_java_classid = H5.H5Eregister_class("HDF-Java-Error", "hdf-java", "2.5"); - current_stackid = H5.H5Eget_current_stack(); + current_stackid = H5.H5Eget_current_stack(); } catch (Throwable err) { err.printStackTrace(); @@ -56,7 +58,8 @@ public class TestH5Eparams { } @After - public void H5Erestore_stack_class() { + public void H5Erestore_stack_class() + { try { H5.H5Eunregister_class(hdf_java_classid); hdf_java_classid = -1; @@ -71,7 +74,8 @@ public class TestH5Eparams { } @Test - public void testH5Eget_class_name() { + public void testH5Eget_class_name() + { try { String class_name = H5.H5Eget_class_name(hdf_java_classid); assertNotNull("H5.H5Eget_class_name: " + class_name, class_name); @@ -84,7 +88,8 @@ public class TestH5Eparams { } @Test - public void testH5Eprint2() { + public void testH5Eprint2() + { try { assertFalse(current_stackid < 0); H5.H5Eprint2(current_stackid, null); @@ -96,17 +101,20 @@ public class TestH5Eparams { } @Ignore("Tested with create_msg_major[minor]") - public void testH5Eclose_msg() { + public void testH5Eclose_msg() + { fail("Not yet implemented"); } @Test(expected = NullPointerException.class) - public void testH5Ecreate_msg_name_null() throws Throwable { + public void testH5Ecreate_msg_name_null() throws Throwable + { H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MAJOR, null); } @Test - public void testH5Ecreate_msg_major() { + public void testH5Ecreate_msg_major() + { try { long err_id = H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MAJOR, "Error in Test"); assertFalse("H5.H5Ecreate_msg_major: " + err_id, err_id < 0); @@ -119,9 +127,11 @@ public class TestH5Eparams { } @Test - public void testH5Ecreate_msg_minor() { + public void testH5Ecreate_msg_minor() + { try { - long err_id = H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MINOR, "Error in Test Function"); + long err_id = + H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MINOR, "Error in Test Function"); assertFalse("H5.H5Ecreate_msg_minor: " + err_id, err_id < 0); H5.H5Eclose_msg(err_id); } @@ -132,10 +142,11 @@ public class TestH5Eparams { } @Test - public void testH5Eget_msg() { - int[] error_msg_type = { HDF5Constants.H5E_MINOR }; - long err_id = -1; - String msg = null; + public void testH5Eget_msg() + { + int[] error_msg_type = {HDF5Constants.H5E_MINOR}; + long err_id = -1; + String msg = null; try { err_id = H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MAJOR, "Error in Test"); } @@ -164,7 +175,8 @@ public class TestH5Eparams { } @Test - public void testH5Ecreate_stack() { + public void testH5Ecreate_stack() + { long stk_id = -1; try { stk_id = H5.H5Ecreate_stack(); @@ -184,7 +196,8 @@ public class TestH5Eparams { } @Test - public void testH5EprintInt() { + public void testH5EprintInt() + { assertFalse(current_stackid < 0); try { H5.H5Eprint2(current_stackid, null); @@ -196,7 +209,8 @@ public class TestH5Eparams { } @Test - public void testH5EclearInt() { + public void testH5EclearInt() + { try { H5.H5Eclear(current_stackid); } @@ -207,7 +221,8 @@ public class TestH5Eparams { } @Test - public void testH5Eclear2() { + public void testH5Eclear2() + { try { H5.H5Eclear2(current_stackid); } @@ -218,7 +233,8 @@ public class TestH5Eparams { } @Test - public void testH5Eauto_is_v2() { + public void testH5Eauto_is_v2() + { boolean is_v2 = false; try { is_v2 = H5.H5Eauto_is_v2(current_stackid); @@ -231,7 +247,8 @@ public class TestH5Eparams { } @Test - public void testH5Eget_num() { + public void testH5Eget_num() + { long num_msg = -1; try { num_msg = H5.H5Eget_num(current_stackid); @@ -244,7 +261,8 @@ public class TestH5Eparams { } @Test - public void testH5Eget_num_with_msg() { + public void testH5Eget_num_with_msg() + { try { H5.H5Eset_current_stack(current_stackid); } @@ -277,5 +295,4 @@ public class TestH5Eparams { } assertTrue("H5.H5Eget_num_with_msg #:" + num_msg, num_msg > 0); } - } diff --git a/java/test/TestH5Eregister.java b/java/test/TestH5Eregister.java index 99e8e5f..b4c63e0 100644 --- a/java/test/TestH5Eregister.java +++ b/java/test/TestH5Eregister.java @@ -14,6 +14,7 @@ package test; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; + import hdf.hdf5lib.H5; import org.junit.After; @@ -23,40 +24,48 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Eregister { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); @Before - public void checkOpenIDs() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void checkOpenIDs() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @After - public void nextTestName() { + public void nextTestName() + { System.out.println(); } @Test(expected = NullPointerException.class) - public void testH5Eregister_class_cls_name_null() throws Throwable { + public void testH5Eregister_class_cls_name_null() throws Throwable + { H5.H5Eregister_class(null, "libname", "version"); } @Test(expected = NullPointerException.class) - public void testH5Eregister_class_lib_name_null() throws Throwable { + public void testH5Eregister_class_lib_name_null() throws Throwable + { H5.H5Eregister_class("clsname", null, "version"); } @Test(expected = NullPointerException.class) - public void testH5Eregister_class_version_null() throws Throwable { + public void testH5Eregister_class_version_null() throws Throwable + { H5.H5Eregister_class("clsname", "libname", null); } @Test(expected = IllegalArgumentException.class) - public void testH5Eunregister_class_invalid_classid() throws Throwable { + public void testH5Eunregister_class_invalid_classid() throws Throwable + { H5.H5Eunregister_class(-1); } @Test - public void testH5Eregister_class() { + public void testH5Eregister_class() + { long hdf_java_classid = -1; try { hdf_java_classid = H5.H5Eregister_class("HDF-Java-Error", "hdf-java", "2.5"); diff --git a/java/test/TestH5F.java b/java/test/TestH5F.java index 16786b9..fde2739 100644 --- a/java/test/TestH5F.java +++ b/java/test/TestH5F.java @@ -30,49 +30,58 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5F { - @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "testF.h5"; + @Rule + public TestName testname = new TestName(); + private static final String H5_FILE = "testF.h5"; private static final String H5_FILE2 = "testF2.h5"; - private static final int COUNT_OBJ_FILE = 1; - private static final int COUNT_OBJ_DATASET = 0; - private static final int COUNT_OBJ_GROUP = 0; + private static final int COUNT_OBJ_FILE = 1; + private static final int COUNT_OBJ_DATASET = 0; + private static final int COUNT_OBJ_GROUP = 0; private static final int COUNT_OBJ_DATATYPE = 0; - private static final int COUNT_OBJ_ATTR = 0; - private static final int COUNT_OBJ_ALL = (COUNT_OBJ_FILE - + COUNT_OBJ_DATASET + COUNT_OBJ_GROUP + COUNT_OBJ_DATATYPE + COUNT_OBJ_ATTR); - private static final int[] OBJ_COUNTS = { COUNT_OBJ_FILE, - COUNT_OBJ_DATASET, COUNT_OBJ_GROUP, COUNT_OBJ_DATATYPE, - COUNT_OBJ_ATTR, COUNT_OBJ_ALL }; - private static final int[] OBJ_TYPES = { HDF5Constants.H5F_OBJ_FILE, - HDF5Constants.H5F_OBJ_DATASET, HDF5Constants.H5F_OBJ_GROUP, - HDF5Constants.H5F_OBJ_DATATYPE, HDF5Constants.H5F_OBJ_ATTR, - HDF5Constants.H5F_OBJ_ALL }; - long H5fid = HDF5Constants.H5I_INVALID_HID; - - private final void _deleteFile(String filename) { + private static final int COUNT_OBJ_ATTR = 0; + private static final int COUNT_OBJ_ALL = + (COUNT_OBJ_FILE + COUNT_OBJ_DATASET + COUNT_OBJ_GROUP + COUNT_OBJ_DATATYPE + COUNT_OBJ_ATTR); + private static final int[] OBJ_COUNTS = {COUNT_OBJ_FILE, COUNT_OBJ_DATASET, COUNT_OBJ_GROUP, + COUNT_OBJ_DATATYPE, COUNT_OBJ_ATTR, COUNT_OBJ_ALL}; + private static final int[] OBJ_TYPES = {HDF5Constants.H5F_OBJ_FILE, HDF5Constants.H5F_OBJ_DATASET, + HDF5Constants.H5F_OBJ_GROUP, HDF5Constants.H5F_OBJ_DATATYPE, + HDF5Constants.H5F_OBJ_ATTR, HDF5Constants.H5F_OBJ_ALL}; + long H5fid = HDF5Constants.H5I_INVALID_HID; + + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } @Before - public void createH5file() - throws HDF5LibraryException, NullPointerException { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws HDF5LibraryException, NullPointerException + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } H5fid = HDF5Constants.H5I_INVALID_HID; } _deleteFile(H5_FILE); @@ -80,7 +89,8 @@ public class TestH5F { } @Test - public void testH5Fget_create_plist() { + public void testH5Fget_create_plist() + { long plist = HDF5Constants.H5I_INVALID_HID; try { @@ -90,13 +100,23 @@ public class TestH5F { fail("H5.H5Fget_create_plist: " + err); } assertTrue(plist > 0); - try {H5.H5Pclose(plist);} catch (HDF5LibraryException e) {e.printStackTrace();} + try { + H5.H5Pclose(plist); + } + catch (HDF5LibraryException e) { + e.printStackTrace(); + } } @Test(expected = HDF5LibraryException.class) - public void testH5Fget_create_plist_closed() throws Throwable { + public void testH5Fget_create_plist_closed() throws Throwable + { if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } // it should fail because the file was closed. @@ -104,7 +124,8 @@ public class TestH5F { } @Test - public void testH5Fget_access_plist() { + public void testH5Fget_access_plist() + { long plist = HDF5Constants.H5I_INVALID_HID; try { @@ -114,13 +135,23 @@ public class TestH5F { fail("H5.H5Fget_access_plist: " + err); } assertTrue(plist > 0); - try {H5.H5Pclose(plist);} catch (HDF5LibraryException e) {e.printStackTrace();} + try { + H5.H5Pclose(plist); + } + catch (HDF5LibraryException e) { + e.printStackTrace(); + } } @Test(expected = HDF5LibraryException.class) - public void testH5Fget_access_plist_closed() throws Throwable { + public void testH5Fget_access_plist_closed() throws Throwable + { if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } // it should fail because the file was closed. @@ -128,17 +159,21 @@ public class TestH5F { } @Test - public void testH5Fget_intent_rdwr() { + public void testH5Fget_intent_rdwr() + { int intent = 0; if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } H5fid = HDF5Constants.H5I_INVALID_HID; } try { - H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); @@ -153,17 +188,21 @@ public class TestH5F { } @Test - public void testH5Fget_intent_rdonly() { + public void testH5Fget_intent_rdonly() + { int intent = 0; if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } H5fid = HDF5Constants.H5I_INVALID_HID; } try { - H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, - HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); @@ -178,26 +217,26 @@ public class TestH5F { } @Test - public void testH5Fget_fileno_same() { + public void testH5Fget_fileno_same() + { long fileno1 = 0; long fileno2 = 0; - long fid1 = HDF5Constants.H5I_INVALID_HID; - long fid2 = HDF5Constants.H5I_INVALID_HID; + long fid1 = HDF5Constants.H5I_INVALID_HID; + long fid2 = HDF5Constants.H5I_INVALID_HID; try { - fid1 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + fid1 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Fflush(fid1, HDF5Constants.H5F_SCOPE_LOCAL); assertTrue("H5Fcreate failed", fid1 > 0); - fid2 = H5.H5Fopen(H5_FILE2, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); + fid2 = H5.H5Fopen(H5_FILE2, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); assertTrue("H5Fopen failed", fid2 > 0); fileno1 = H5.H5Fget_fileno(fid1); - assertTrue("H5Fget_fileno1="+fileno1, fileno1 > 0); + assertTrue("H5Fget_fileno1=" + fileno1, fileno1 > 0); fileno2 = H5.H5Fget_fileno(fid2); - assertTrue("H5Fget_fileno2="+fileno2, fileno2 > 0); + assertTrue("H5Fget_fileno2=" + fileno2, fileno2 > 0); - assertEquals("fileno1["+fileno1+"]!=fileno2["+fileno2+"]", fileno1, fileno2); + assertEquals("fileno1[" + fileno1 + "]!=fileno2[" + fileno2 + "]", fileno1, fileno2); } catch (Throwable err) { fail("testH5Fget_fileno_same: " + err); @@ -209,23 +248,24 @@ public class TestH5F { } @Test - public void testH5Fget_fileno_diff() { + public void testH5Fget_fileno_diff() + { long fileno1 = 0; long fileno2 = 0; - long fid2 = HDF5Constants.H5I_INVALID_HID; + long fid2 = HDF5Constants.H5I_INVALID_HID; try { - fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Fflush(fid2, HDF5Constants.H5F_SCOPE_LOCAL); assertTrue("H5Fcreate failed", fid2 > 0); fileno1 = H5.H5Fget_fileno(H5fid); - assertTrue("H5Fget_fileno1="+fileno1, fileno1 > 0); + assertTrue("H5Fget_fileno1=" + fileno1, fileno1 > 0); fileno2 = H5.H5Fget_fileno(fid2); - assertTrue("H5Fget_fileno2="+fileno2, fileno2 > 0); + assertTrue("H5Fget_fileno2=" + fileno2, fileno2 > 0); - assertNotEquals("fileno1["+fileno1+"]==fileno2["+fileno2+"]", fileno1, fileno2); + assertNotEquals("fileno1[" + fileno1 + "]==fileno2[" + fileno2 + "]", fileno1, fileno2); } catch (Throwable err) { fail("testH5Fget_fileno_diff: " + err); @@ -236,7 +276,8 @@ public class TestH5F { } @Test - public void testH5Fget_obj_count() { + public void testH5Fget_obj_count() + { long count = -1; for (int i = 0; i < OBJ_TYPES.length; i++) { @@ -252,10 +293,11 @@ public class TestH5F { } @Test - public void testH5Fget_obj_ids() { - long count = 0; - long max_objs = 100; - long[] obj_id_list = new long[(int)max_objs]; + public void testH5Fget_obj_ids() + { + long count = 0; + long max_objs = 100; + long[] obj_id_list = new long[(int)max_objs]; int[] open_obj_counts = new int[OBJ_TYPES.length]; for (int i = 0; i < OBJ_TYPES.length; i++) @@ -267,8 +309,7 @@ public class TestH5F { for (int i = 0; i < OBJ_TYPES.length; i++) { try { - count = H5.H5Fget_obj_ids(H5fid, OBJ_TYPES[i], max_objs, - obj_id_list); + count = H5.H5Fget_obj_ids(H5fid, OBJ_TYPES[i], max_objs, obj_id_list); } catch (Throwable err) { fail("H5.H5Fget_obj_ids: " + err); diff --git a/java/test/TestH5Fbasic.java b/java/test/TestH5Fbasic.java index 4f3d928..37be943 100644 --- a/java/test/TestH5Fbasic.java +++ b/java/test/TestH5Fbasic.java @@ -31,45 +31,59 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Fbasic { - @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "testFb.h5"; + @Rule + public TestName testname = new TestName(); + private static final String H5_FILE = "testFb.h5"; private static final String TXT_FILE = "testFb.txt"; - long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5fid = HDF5Constants.H5I_INVALID_HID; - private final void _deleteFile(String filename) { + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } @Before - public void createH5file() throws HDF5LibraryException, NullPointerException { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws HDF5LibraryException, NullPointerException + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } _deleteFile(H5_FILE); System.out.println(); } @Test - public void testH5Fcreate() { + public void testH5Fcreate() + { assertTrue(H5fid > 0); } @Test - public void testH5Fis_accessible() { + public void testH5Fis_accessible() + { boolean isH5 = false; try { @@ -82,18 +96,19 @@ public class TestH5Fbasic { } @Test(expected = HDF5LibraryException.class) - public void testH5Fcreate_EXCL() throws Throwable { - H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_EXCL, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + public void testH5Fcreate_EXCL() throws Throwable + { + H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_EXCL, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Fopen_read_only() throws Throwable { + public void testH5Fopen_read_only() throws Throwable + { long fid = HDF5Constants.H5I_INVALID_HID; try { - fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); + fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); @@ -108,8 +123,7 @@ public class TestH5Fbasic { File file = new File(H5_FILE); if (file.setWritable(false)) { // this should fail. - fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); + fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); try { H5.H5Fclose(fid); @@ -123,13 +137,13 @@ public class TestH5Fbasic { } @Test(expected = HDF5LibraryException.class) - public void testH5Freopen_closed() throws Throwable { - long fid = HDF5Constants.H5I_INVALID_HID; + public void testH5Freopen_closed() throws Throwable + { + long fid = HDF5Constants.H5I_INVALID_HID; long fid2 = HDF5Constants.H5I_INVALID_HID; try { - fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); + fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); @@ -146,13 +160,13 @@ public class TestH5Fbasic { } @Test - public void testH5Freopen() { - long fid = HDF5Constants.H5I_INVALID_HID; + public void testH5Freopen() + { + long fid = HDF5Constants.H5I_INVALID_HID; long fid2 = HDF5Constants.H5I_INVALID_HID; try { - fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); + fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); @@ -180,12 +194,12 @@ public class TestH5Fbasic { } @Test - public void testH5Fclose() { + public void testH5Fclose() + { long fid = HDF5Constants.H5I_INVALID_HID; try { - fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); + fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); @@ -200,12 +214,12 @@ public class TestH5Fbasic { } @Test(expected = HDF5LibraryException.class) - public void testH5Fclose_twice() throws Throwable { + public void testH5Fclose_twice() throws Throwable + { long fid = HDF5Constants.H5I_INVALID_HID; try { - fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); + fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); @@ -223,7 +237,8 @@ public class TestH5Fbasic { } @Test - public void testH5Fget_freespace() { + public void testH5Fget_freespace() + { long freeSpace = 0; try { @@ -238,7 +253,8 @@ public class TestH5Fbasic { // TODO add/and delete objects and test freespace @Test - public void testH5Fget_filesize() { + public void testH5Fget_filesize() + { long fileSize = 0; try { @@ -253,7 +269,8 @@ public class TestH5Fbasic { // TODO add/and delete objects and test freespace @Test - public void testH5Fget_mdc_hit_rate() { + public void testH5Fget_mdc_hit_rate() + { double rate; try { @@ -265,8 +282,9 @@ public class TestH5Fbasic { } @Test - public void testH5Fget_mdc_size() { - int nentries = -1; + public void testH5Fget_mdc_size() + { + int nentries = -1; long cache_sizes[] = new long[3]; try { @@ -281,7 +299,8 @@ public class TestH5Fbasic { // TODO: test more cases of different cache sizes. @Test - public void testH5Freset_mdc_hit_rate_stats() { + public void testH5Freset_mdc_hit_rate_stats() + { try { H5.H5Freset_mdc_hit_rate_stats(H5fid); @@ -292,7 +311,8 @@ public class TestH5Fbasic { } @Test - public void testH5Fget_name() { + public void testH5Fget_name() + { String fname = null; try { @@ -306,7 +326,8 @@ public class TestH5Fbasic { } @Test - public void testH5Fclear_elink_file_cache() { + public void testH5Fclear_elink_file_cache() + { try { H5.H5Fclear_elink_file_cache(H5fid); @@ -317,7 +338,8 @@ public class TestH5Fbasic { } @Test - public void testH5F_dset_no_attrs_hint() { + public void testH5F_dset_no_attrs_hint() + { boolean ret_val_id = true; try { ret_val_id = H5.H5Fget_dset_no_attrs_hint(H5fid); diff --git a/java/test/TestH5Fparams.java b/java/test/TestH5Fparams.java index 0376485..6accc3b 100644 --- a/java/test/TestH5Fparams.java +++ b/java/test/TestH5Fparams.java @@ -32,46 +32,54 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Fparams { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); @Before - public void checkOpenIDs() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void checkOpenIDs() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @After - public void nextTestName() { + public void nextTestName() + { System.out.println(); } @Test(expected = NullPointerException.class) - public void testH5Fcreate_null() throws Throwable { - H5.H5Fcreate(null, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + public void testH5Fcreate_null() throws Throwable + { + H5.H5Fcreate(null, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } @Test(expected = NullPointerException.class) - public void testH5Fopen_null() throws Throwable { + public void testH5Fopen_null() throws Throwable + { H5.H5Fopen(null, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } @Test(expected = NullPointerException.class) - public void testH5Fis_accessible_null() throws Throwable { + public void testH5Fis_accessible_null() throws Throwable + { H5.H5Fis_accessible(null, -1); } @Test(expected = NullPointerException.class) - public void testH5Fmount_null() throws Throwable { + public void testH5Fmount_null() throws Throwable + { H5.H5Fmount(-1, null, -1, HDF5Constants.H5P_DEFAULT); } @Test(expected = NullPointerException.class) - public void testH5Funmount_null() throws Throwable { + public void testH5Funmount_null() throws Throwable + { H5.H5Funmount(-1, null); } @Ignore - public void testH5Fis_hdf5_text() { + public void testH5Fis_hdf5_text() + { File txtFile = null; boolean isH5 = false; @@ -91,25 +99,27 @@ public class TestH5Fparams { txtFile.delete(); } catch (SecurityException e) { - ;// e.printStackTrace(); + ; // e.printStackTrace(); } } - @Test//(expected = HDF5LibraryException.class) - public void testH5Fclose_negative() throws Throwable { + @Test //(expected = HDF5LibraryException.class) + public void testH5Fclose_negative() throws Throwable + { // cannot close a file with negative id. int fid = H5.H5Fclose(-1); assertTrue(fid == 0); } @Test - public void testH5Fcreate() { - long fid = HDF5Constants.H5I_INVALID_HID; + public void testH5Fcreate() + { + long fid = HDF5Constants.H5I_INVALID_HID; File file = null; try { - fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); if (fid > 0) { H5.H5Fclose(fid); } @@ -124,18 +134,19 @@ public class TestH5Fparams { file.delete(); } catch (SecurityException e) { - ;// e.printStackTrace(); + ; // e.printStackTrace(); } } } @Test - public void testH5Fflush_global() { + public void testH5Fflush_global() + { long fid = HDF5Constants.H5I_INVALID_HID; try { - fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); @@ -156,12 +167,13 @@ public class TestH5Fparams { } @Test - public void testH5Fflush_local() { + public void testH5Fflush_local() + { long fid = HDF5Constants.H5I_INVALID_HID; try { - fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); @@ -182,13 +194,14 @@ public class TestH5Fparams { } @Test - public void testH5Fget_info() { + public void testH5Fget_info() + { long fid = HDF5Constants.H5I_INVALID_HID; try { try { - fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fcreate: " + err); @@ -205,21 +218,26 @@ public class TestH5Fparams { } } catch (Exception e) { - e.printStackTrace(); + e.printStackTrace(); } finally { - try {H5.H5Fclose(fid);} catch (Exception ex) {} + try { + H5.H5Fclose(fid); + } + catch (Exception ex) { + } } } - @Ignore//(expected = HDF5FunctionArgumentException.class) - public void testH5Fset_libver_bounds_invalidlow() throws Throwable { + @Ignore //(expected = HDF5FunctionArgumentException.class) + public void testH5Fset_libver_bounds_invalidlow() throws Throwable + { long fid = HDF5Constants.H5I_INVALID_HID; try { try { - fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fcreate: " + err); @@ -227,26 +245,36 @@ public class TestH5Fparams { H5.H5Fset_libver_bounds(fid, 5, HDF5Constants.H5F_LIBVER_LATEST); } finally { - try {H5.H5Fclose(fid);} catch (Exception ex) {} + try { + H5.H5Fclose(fid); + } + catch (Exception ex) { + } } } - @Ignore//(expected = HDF5FunctionArgumentException.class) - public void testH5Fset_libver_bounds_invalidhigh() throws Throwable { + @Ignore //(expected = HDF5FunctionArgumentException.class) + public void testH5Fset_libver_bounds_invalidhigh() throws Throwable + { long fid = HDF5Constants.H5I_INVALID_HID; try { try { - fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fcreate: " + err); } - H5.H5Fset_libver_bounds(fid, HDF5Constants.H5F_LIBVER_LATEST, HDF5Constants.H5F_LIBVER_LATEST+1); + H5.H5Fset_libver_bounds(fid, HDF5Constants.H5F_LIBVER_LATEST, + HDF5Constants.H5F_LIBVER_LATEST + 1); } finally { - try {H5.H5Fclose(fid);} catch (Exception ex) {} + try { + H5.H5Fclose(fid); + } + catch (Exception ex) { + } } } } diff --git a/java/test/TestH5Fswmr.java b/java/test/TestH5Fswmr.java index 1ec78fe..823640d 100644 --- a/java/test/TestH5Fswmr.java +++ b/java/test/TestH5Fswmr.java @@ -29,25 +29,31 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Fswmr { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "testswmr.h5"; - long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5fid = HDF5Constants.H5I_INVALID_HID; long H5fapl = HDF5Constants.H5I_INVALID_HID; long H5fcpl = HDF5Constants.H5I_INVALID_HID; - private final void _deleteFile(String filename) { + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } @Before - public void createH5file() - throws HDF5LibraryException, NullPointerException { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws HDF5LibraryException, NullPointerException + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); H5fapl = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS); @@ -59,17 +65,30 @@ public class TestH5Fswmr { } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5fapl > 0) { - try {H5.H5Pclose(H5fapl);} catch (Exception ex) {} + try { + H5.H5Pclose(H5fapl); + } + catch (Exception ex) { + } H5fapl = HDF5Constants.H5I_INVALID_HID; } if (H5fcpl > 0) { - try {H5.H5Pclose(H5fcpl);} catch (Exception ex) {} + try { + H5.H5Pclose(H5fcpl); + } + catch (Exception ex) { + } H5fcpl = HDF5Constants.H5I_INVALID_HID; } - if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + if (H5fid > 0) { + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } H5fid = HDF5Constants.H5I_INVALID_HID; } _deleteFile(H5_FILE); @@ -77,7 +96,8 @@ public class TestH5Fswmr { } @Test - public void testH5Fstart_swmr_write() { + public void testH5Fstart_swmr_write() + { try { H5.H5Fstart_swmr_write(H5fid); } @@ -87,7 +107,8 @@ public class TestH5Fswmr { } @Test - public void testH5Fswmr_read_attempts() { + public void testH5Fswmr_read_attempts() + { long read_attempts = 0; try { diff --git a/java/test/TestH5G.java b/java/test/TestH5G.java index edf2cbe..1f6da31 100644 --- a/java/test/TestH5G.java +++ b/java/test/TestH5G.java @@ -32,20 +32,22 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5G { - @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "testG.h5"; - private static final String H5_FILE2 = "testG2.h5"; - private static final String[] GROUPS = { "/G1", "/G1/G11", "/G1/G12", - "/G1/G11/G111", "/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114" }; - private static final String[] GROUPS2 = { "/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"}; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5fid2 = HDF5Constants.H5I_INVALID_HID; - - private final long _createGroup(long fid, String name) { + @Rule + public TestName testname = new TestName(); + private static final String H5_FILE = "testG.h5"; + private static final String H5_FILE2 = "testG2.h5"; + private static final String[] GROUPS = {"/G1", "/G1/G11", "/G1/G12", "/G1/G11/G111", + "/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114"}; + private static final String[] GROUPS2 = {"/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"}; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5fid2 = HDF5Constants.H5I_INVALID_HID; + + private final long _createGroup(long fid, String name) + { long gid = HDF5Constants.H5I_INVALID_HID; try { - gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -56,41 +58,51 @@ public class TestH5G { return gid; } - private final long _createGroup2(long fid, String name) { - long gid = HDF5Constants.H5I_INVALID_HID; + private final long _createGroup2(long fid, String name) + { + long gid = HDF5Constants.H5I_INVALID_HID; long gcpl = HDF5Constants.H5I_INVALID_HID; try { - gcpl = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); //create gcpl + gcpl = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); // create gcpl } catch (final Exception ex) { fail("H5.H5Pcreate(): " + ex); } assertTrue("TestH5G._createGroup2: ", gcpl >= 0); try { - H5.H5Pset_link_creation_order(gcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED - + HDF5Constants.H5P_CRT_ORDER_INDEXED); // Set link creation order + H5.H5Pset_link_creation_order(gcpl, + HDF5Constants.H5P_CRT_ORDER_TRACKED + + HDF5Constants.H5P_CRT_ORDER_INDEXED); // Set link creation order } catch (final Exception ex) { - try {H5.H5Pclose(gcpl);} catch (final Exception exx) {} + try { + H5.H5Pclose(gcpl); + } + catch (final Exception exx) { + } fail("H5.H5Pset_link_creation_order: " + ex); } try { - gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, - gcpl, HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, gcpl, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Gcreate: " + err); } finally { - try {H5.H5Pclose(gcpl);} catch (final Exception ex) {} + try { + H5.H5Pclose(gcpl); + } + catch (final Exception ex) { + } } assertTrue("TestH5G._createGroup2: ", gid > 0); return gid; } - private final long _openGroup(long fid, String name) { + private final long _openGroup(long fid, String name) + { long gid = HDF5Constants.H5I_INVALID_HID; try { gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT); @@ -105,26 +117,31 @@ public class TestH5G { return gid; } - private final void _deleteFile(String filename) { + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } @Before - public void createH5file() - throws HDF5LibraryException, NullPointerException { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws HDF5LibraryException, NullPointerException + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); + HDF5Constants.H5P_DEFAULT); H5fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -137,12 +154,20 @@ public class TestH5G { for (int i = 0; i < GROUPS.length; i++) { gid = _createGroup(H5fid, GROUPS[i]); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } for (int i = 0; i < GROUPS2.length; i++) { gid = _createGroup2(H5fid2, GROUPS2[i]); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); @@ -150,20 +175,30 @@ public class TestH5G { } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } if (H5fid2 > 0) { - try {H5.H5Fclose(H5fid2);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid2); + } + catch (Exception ex) { + } } - _deleteFile(H5_FILE); - _deleteFile(H5_FILE2); - System.out.println(); + _deleteFile(H5_FILE); + _deleteFile(H5_FILE2); + System.out.println(); } @Test - public void testH5Gopen() { + public void testH5Gopen() + { long gid = HDF5Constants.H5I_INVALID_HID; for (int i = 0; i < GROUPS.length; i++) { try { @@ -183,7 +218,8 @@ public class TestH5G { } @Test - public void testH5Gget_create_plist() { + public void testH5Gget_create_plist() + { long gid = HDF5Constants.H5I_INVALID_HID; long pid = HDF5Constants.H5I_INVALID_HID; @@ -215,7 +251,8 @@ public class TestH5G { } @Test - public void testH5Gget_info() { + public void testH5Gget_info() + { H5G_info_t info = null; for (int i = 0; i < GROUPS.length; i++) { @@ -232,13 +269,13 @@ public class TestH5G { } @Test - public void testH5Gget_info_by_name() { + public void testH5Gget_info_by_name() + { H5G_info_t info = null; for (int i = 0; i < GROUPS.length; i++) { try { - info = H5.H5Gget_info_by_name(H5fid, GROUPS[i], - HDF5Constants.H5P_DEFAULT); + info = H5.H5Gget_info_by_name(H5fid, GROUPS[i], HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -249,13 +286,13 @@ public class TestH5G { } @Test - public void testH5Gget_info_by_idx() { + public void testH5Gget_info_by_idx() + { H5G_info_t info = null; for (int i = 0; i < 2; i++) { try { - info = H5.H5Gget_info_by_idx(H5fid, "/G1", - HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, - i, HDF5Constants.H5P_DEFAULT); + info = H5.H5Gget_info_by_idx(H5fid, "/G1", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, i, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -266,7 +303,8 @@ public class TestH5G { } @Test - public void testH5Gget_obj_info_all() { + public void testH5Gget_obj_info_all() + { H5G_info_t info = null; long gid = _openGroup(H5fid, GROUPS[0]); @@ -279,27 +317,31 @@ public class TestH5G { fail("TestH5G.testH5Gget_obj_info_all: H5.H5Gget_info: " + err); } finally { - try {H5.H5Gclose(gid);} catch (Exception ex) { } + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } assertNotNull("TestH5G.testH5Gget_obj_info_all: ", info); assertTrue("TestH5G.testH5Gget_obj_info_all: number of links is empty", info.nlinks > 0); - String objNames[] = new String[(int) info.nlinks]; - int objTypes[] = new int[(int) info.nlinks]; - int lnkTypes[] = new int[(int) info.nlinks]; - H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; + String objNames[] = new String[(int)info.nlinks]; + int objTypes[] = new int[(int)info.nlinks]; + int lnkTypes[] = new int[(int)info.nlinks]; + H5O_token_t objTokens[] = new H5O_token_t[(int)info.nlinks]; int names_found = 0; try { - names_found = H5.H5Gget_obj_info_all(H5fid, GROUPS[0], objNames, - objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME); + names_found = H5.H5Gget_obj_info_all(H5fid, GROUPS[0], objNames, objTypes, lnkTypes, objTokens, + HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all: H5.H5Gget_obj_info_all: " + err); } - assertTrue("number found[" + names_found + "] different than expected[" - + objNames.length + "]", names_found == objNames.length); + assertTrue("number found[" + names_found + "] different than expected[" + objNames.length + "]", + names_found == objNames.length); for (int i = 0; i < objNames.length; i++) { assertNotNull("name #" + i + " does not exist", objNames[i]); assertTrue("TestH5G.testH5Gget_obj_info_all: ", objNames[i].length() > 0); @@ -307,7 +349,8 @@ public class TestH5G { } @Test - public void testH5Gget_obj_info_all_gid() { + public void testH5Gget_obj_info_all_gid() + { H5G_info_t info = null; long gid = _openGroup(H5fid, GROUPS[0]); @@ -316,25 +359,27 @@ public class TestH5G { info = H5.H5Gget_info(gid); assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: ", info); assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number of links is empty", info.nlinks > 0); - String objNames[] = new String[(int) info.nlinks]; - H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; - int lnkTypes[] = new int[(int) info.nlinks]; - int objTypes[] = new int[(int) info.nlinks]; + String objNames[] = new String[(int)info.nlinks]; + H5O_token_t objTokens[] = new H5O_token_t[(int)info.nlinks]; + int lnkTypes[] = new int[(int)info.nlinks]; + int objTypes[] = new int[(int)info.nlinks]; int names_found = 0; try { - names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes, - objTokens, HDF5Constants.H5_INDEX_NAME); + names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes, objTokens, + HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all_gid: H5.H5Gget_obj_info_all: " + err); } - assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number found[" + names_found + "] different than expected[" - + objNames.length + "]", names_found == objNames.length); + assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number found[" + names_found + + "] different than expected[" + objNames.length + "]", + names_found == objNames.length); for (int i = 0; i < objNames.length; i++) { - assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: name #" + i + " does not exist", objNames[i]); + assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: name #" + i + " does not exist", + objNames[i]); assertTrue("TestH5G.testH5Gget_obj_info_all_gid: ", objNames[i].length() > 0); } } @@ -343,12 +388,17 @@ public class TestH5G { fail("TestH5G.testH5Gget_obj_info_all_gid: H5.H5Gget_info: " + err); } finally { - try {H5.H5Gclose(gid);} catch (Exception ex) { } + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } } @Test - public void testH5Gget_obj_info_all_gid2() { + public void testH5Gget_obj_info_all_gid2() + { H5G_info_t info = null; long gid = _openGroup(H5fid, GROUPS[1]); @@ -357,25 +407,27 @@ public class TestH5G { info = H5.H5Gget_info(gid); assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: ", info); assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number of links is empty", info.nlinks > 0); - String objNames[] = new String[(int) info.nlinks]; - H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; - int lnkTypes[] = new int[(int) info.nlinks]; - int objTypes[] = new int[(int) info.nlinks]; + String objNames[] = new String[(int)info.nlinks]; + H5O_token_t objTokens[] = new H5O_token_t[(int)info.nlinks]; + int lnkTypes[] = new int[(int)info.nlinks]; + int objTypes[] = new int[(int)info.nlinks]; int names_found = 0; try { - names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes, - objTokens, HDF5Constants.H5_INDEX_NAME); + names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes, objTokens, + HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all_gid2: H5.H5Gget_obj_info_all: " + err); } - assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number found[" + names_found + "] different than expected[" - + objNames.length + "]", names_found == objNames.length); + assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number found[" + names_found + + "] different than expected[" + objNames.length + "]", + names_found == objNames.length); for (int i = 0; i < objNames.length; i++) { - assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: name #" + i + " does not exist", objNames[i]); + assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: name #" + i + " does not exist", + objNames[i]); assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: ", objNames[i].length() > 0); } } @@ -384,73 +436,91 @@ public class TestH5G { fail("TestH5G.testH5Gget_obj_info_all_gid2: H5.H5Gget_info: " + err); } finally { - try {H5.H5Gclose(gid);} catch (Exception ex) { } + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } } @Test - public void testH5Gget_obj_info_max() { - long gid = _openGroup(H5fid, GROUPS[0]); - long groups_max_size = GROUPS.length + 1; - String objNames[] = new String[(int)groups_max_size]; - int objTypes[] = new int[(int)groups_max_size]; - int lnkTypes[] = new int[(int)groups_max_size]; + public void testH5Gget_obj_info_max() + { + long gid = _openGroup(H5fid, GROUPS[0]); + long groups_max_size = GROUPS.length + 1; + String objNames[] = new String[(int)groups_max_size]; + int objTypes[] = new int[(int)groups_max_size]; + int lnkTypes[] = new int[(int)groups_max_size]; H5O_token_t objTokens[] = new H5O_token_t[(int)groups_max_size]; int names_found = 0; try { - names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes, - objTokens, groups_max_size); + names_found = + H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes, objTokens, groups_max_size); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_max: H5.H5Gget_obj_info_max: " + err); } finally { - try {H5.H5Gclose(gid);} catch (Exception ex) { } + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } // expected number does not include root group - assertTrue("TestH5G.testH5Gget_obj_info_max: number found[" + names_found + "] different than expected[" - + (GROUPS.length - 1) + "]", names_found == (GROUPS.length - 1)); - for (int i = 0; i < GROUPS.length-1; i++) { - assertNotNull("TestH5G.testH5Gget_obj_info_max: name #"+i+" does not exist",objNames[i]); - assertTrue("TestH5G.testH5Gget_obj_info_max: ", objNames[i].length()>0); + assertTrue("TestH5G.testH5Gget_obj_info_max: number found[" + names_found + + "] different than expected[" + (GROUPS.length - 1) + "]", + names_found == (GROUPS.length - 1)); + for (int i = 0; i < GROUPS.length - 1; i++) { + assertNotNull("TestH5G.testH5Gget_obj_info_max: name #" + i + " does not exist", objNames[i]); + assertTrue("TestH5G.testH5Gget_obj_info_max: ", objNames[i].length() > 0); } } @Test - public void testH5Gget_obj_info_max_limit() { - long gid = _openGroup(H5fid, GROUPS[0]); - long groups_max_size = GROUPS.length - 3; - String objNames[] = new String[(int)groups_max_size]; - int objTypes[] = new int[(int)groups_max_size]; - int lnkTypes[] = new int[(int)groups_max_size]; + public void testH5Gget_obj_info_max_limit() + { + long gid = _openGroup(H5fid, GROUPS[0]); + long groups_max_size = GROUPS.length - 3; + String objNames[] = new String[(int)groups_max_size]; + int objTypes[] = new int[(int)groups_max_size]; + int lnkTypes[] = new int[(int)groups_max_size]; H5O_token_t objTokens[] = new H5O_token_t[(int)groups_max_size]; int names_found = 0; try { - names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes, - objTokens, groups_max_size); + names_found = + H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes, objTokens, groups_max_size); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_max_limit: H5.H5Gget_obj_info_max: " + err); } finally { - try {H5.H5Gclose(gid);} catch (Exception ex) { } + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } - assertTrue("TestH5G.testH5Gget_obj_info_max_limit: number found[" + names_found + "] different than expected[" - + groups_max_size + "]", names_found == groups_max_size); + assertTrue("TestH5G.testH5Gget_obj_info_max_limit: number found[" + names_found + + "] different than expected[" + groups_max_size + "]", + names_found == groups_max_size); for (int i = 0; i < objNames.length; i++) { - assertNotNull("TestH5G.testH5Gget_obj_info_max_limit: name #" + i + " does not exist", objNames[i]); + assertNotNull("TestH5G.testH5Gget_obj_info_max_limit: name #" + i + " does not exist", + objNames[i]); assertTrue("TestH5G.testH5Gget_obj_info_max_limit: ", objNames[i].length() > 0); } } @Test - public void testH5Gget_obj_info_all_byIndexType() { + public void testH5Gget_obj_info_all_byIndexType() + { H5G_info_t info = null; long gid = _openGroup(H5fid2, GROUPS2[0]); @@ -463,41 +533,44 @@ public class TestH5G { fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_info: " + err); } finally { - try {H5.H5Gclose(gid);} catch (Exception ex) { } + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } assertNotNull("TestH5G.testH5Gget_obj_info_all_byIndexType: ", info); assertTrue("TestH5G.testH5Gget_obj_info_all_byIndexType: number of links is empty", info.nlinks > 0); - String objNames[] = new String[(int) info.nlinks]; - int objTypes[] = new int[(int) info.nlinks]; - int lnkTypes[] = new int[(int) info.nlinks]; - H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; + String objNames[] = new String[(int)info.nlinks]; + int objTypes[] = new int[(int)info.nlinks]; + int lnkTypes[] = new int[(int)info.nlinks]; + H5O_token_t objTokens[] = new H5O_token_t[(int)info.nlinks]; try { - H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames, - objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_CRT_ORDER); + H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames, objTypes, lnkTypes, objTokens, + HDF5Constants.H5_INDEX_CRT_ORDER); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_obj_info_all: " + err); } - assertEquals("G12",objNames[1]); - assertEquals("G13", objNames[2] ); - assertEquals("G11", objNames[3] ); + assertEquals("G12", objNames[1]); + assertEquals("G13", objNames[2]); + assertEquals("G11", objNames[3]); try { - H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames, - objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME); + H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames, objTypes, lnkTypes, objTokens, + HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_obj_info_all: " + err); } - assertEquals("G12",objNames[1]); - assertEquals("G13", objNames[2] ); - assertEquals("G14", objNames[3] ); + assertEquals("G12", objNames[1]); + assertEquals("G13", objNames[2]); + assertEquals("G14", objNames[3]); } - } diff --git a/java/test/TestH5Gbasic.java b/java/test/TestH5Gbasic.java index 6e2e450..8ec04dd 100644 --- a/java/test/TestH5Gbasic.java +++ b/java/test/TestH5Gbasic.java @@ -30,15 +30,17 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Gbasic { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "testGb.h5"; - long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5fid = HDF5Constants.H5I_INVALID_HID; - private final long _createGroup(long fid, String name) { + private final long _createGroup(long fid, String name) + { long gid = HDF5Constants.H5I_INVALID_HID; try { - gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -48,64 +50,81 @@ public class TestH5Gbasic { return gid; } - private final void _deleteFile(String filename) { + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } @Before - public void createH5file() - throws HDF5LibraryException, NullPointerException { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws HDF5LibraryException, NullPointerException + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } _deleteFile(H5_FILE); System.out.println(); } - @Test//(expected = HDF5LibraryException.class) - public void testH5Gclose_invalid() throws Throwable { + @Test //(expected = HDF5LibraryException.class) + public void testH5Gclose_invalid() throws Throwable + { long gid = H5.H5Gclose(-1); assertTrue(gid == 0); } @Test(expected = NullPointerException.class) - public void testH5Gcreate_null() throws Throwable { + public void testH5Gcreate_null() throws Throwable + { long gid = HDF5Constants.H5I_INVALID_HID; // it should fail because the group name is null - gid = H5.H5Gcreate(H5fid, null, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate(H5fid, null, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } @Test(expected = HDF5LibraryException.class) - public void testH5Gcreate_invalid() throws Throwable { - H5.H5Gcreate(-1, "Invalid ID", HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + public void testH5Gcreate_invalid() throws Throwable + { + H5.H5Gcreate(-1, "Invalid ID", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Gcreate() { + public void testH5Gcreate() + { long gid = HDF5Constants.H5I_INVALID_HID; try { - gid = H5.H5Gcreate(H5fid, "/testH5Gcreate", - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate(H5fid, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -113,11 +132,16 @@ public class TestH5Gbasic { } assertTrue(gid > 0); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } @Test - public void testH5Gclose() { + public void testH5Gclose() + { long gid = _createGroup(H5fid, "/testH5Gcreate"); assertTrue(gid > 0); @@ -130,24 +154,28 @@ public class TestH5Gbasic { } @Test(expected = HDF5LibraryException.class) - public void testH5Gcreate_exists() throws Throwable { + public void testH5Gcreate_exists() throws Throwable + { long gid = _createGroup(H5fid, "/testH5Gcreate"); assertTrue(gid > 0); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } // it should failed now because the group already exists in file - gid = H5.H5Gcreate(H5fid, "/testH5Gcreate", - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate(H5fid, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Gcreate_anon() { + public void testH5Gcreate_anon() + { long gid = HDF5Constants.H5I_INVALID_HID; try { - gid = H5.H5Gcreate_anon(H5fid, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate_anon(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -155,42 +183,61 @@ public class TestH5Gbasic { } assertTrue(gid > 0); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } @Test(expected = NullPointerException.class) - public void testH5Gopen_null() throws Throwable { + public void testH5Gopen_null() throws Throwable + { long gid = HDF5Constants.H5I_INVALID_HID; gid = H5.H5Gopen(H5fid, null, HDF5Constants.H5P_DEFAULT); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } @Test(expected = HDF5LibraryException.class) - public void testH5Gopen_invalid() throws Throwable { + public void testH5Gopen_invalid() throws Throwable + { H5.H5Gopen(-1, "Invalid ID", HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Gopen_not_exists() throws Throwable { + public void testH5Gopen_not_exists() throws Throwable + { long gid = HDF5Constants.H5I_INVALID_HID; - gid = H5.H5Gopen(H5fid, "Never_created", HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gopen(H5fid, "Never_created", HDF5Constants.H5P_DEFAULT); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } @Test - public void testH5Gopen() { + public void testH5Gopen() + { long gid = _createGroup(H5fid, "/testH5Gcreate"); assertTrue(gid > 0); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } try { - gid = H5.H5Gopen(H5fid, "/testH5Gcreate", - HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gopen(H5fid, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -198,16 +245,22 @@ public class TestH5Gbasic { } assertTrue(gid > 0); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } @Test(expected = HDF5LibraryException.class) - public void testH5Gget_create_plist_invalid() throws Throwable { + public void testH5Gget_create_plist_invalid() throws Throwable + { H5.H5Gget_create_plist(-1); } @Test - public void testH5Gget_create_plist() { + public void testH5Gget_create_plist() + { long pid = HDF5Constants.H5I_INVALID_HID; long gid = _createGroup(H5fid, "/testH5Gcreate"); assertTrue(gid > 0); @@ -216,126 +269,173 @@ public class TestH5Gbasic { pid = H5.H5Gget_create_plist(gid); } catch (Throwable err) { - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } err.printStackTrace(); fail("H5.H5Gget_create_plist: " + err); } assertTrue(pid > 0); - try {H5.H5Pclose(pid);} catch (Exception ex) {} + try { + H5.H5Pclose(pid); + } + catch (Exception ex) { + } - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } @Test(expected = HDF5LibraryException.class) - public void testH5Gget_info_invalid() throws Throwable { + public void testH5Gget_info_invalid() throws Throwable + { H5.H5Gget_info(-1); } @Test - public void testH5Gget_info() { + public void testH5Gget_info() + { H5G_info_t info = null; - long gid = _createGroup(H5fid, "/testH5Gcreate"); + long gid = _createGroup(H5fid, "/testH5Gcreate"); assertTrue(gid > 0); try { info = H5.H5Gget_info(gid); } catch (Throwable err) { - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } err.printStackTrace(); fail("H5.H5Gget_info: " + err); } assertNotNull(info); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } @Test(expected = NullPointerException.class) - public void testH5Gget_info_by_name_null() throws Throwable { + public void testH5Gget_info_by_name_null() throws Throwable + { H5.H5Gget_info_by_name(-1, null, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Gget_info_by_name_invalid() throws Throwable { + public void testH5Gget_info_by_name_invalid() throws Throwable + { H5.H5Gget_info_by_name(-1, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Gget_info_by_name_not_exists() throws Throwable { - H5.H5Gget_info_by_name(H5fid, "/testH5Gcreate", - HDF5Constants.H5P_DEFAULT); + public void testH5Gget_info_by_name_not_exists() throws Throwable + { + H5.H5Gget_info_by_name(H5fid, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Gget_info_by_name() { + public void testH5Gget_info_by_name() + { H5G_info_t info = null; - long gid = _createGroup(H5fid, "/testH5Gcreate"); + long gid = _createGroup(H5fid, "/testH5Gcreate"); assertTrue(gid > 0); try { - info = H5.H5Gget_info_by_name(gid, "/testH5Gcreate", - HDF5Constants.H5P_DEFAULT); + info = H5.H5Gget_info_by_name(gid, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } err.printStackTrace(); fail("H5.H5Gget_info_by_name: " + err); } assertNotNull(info); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } @Test - public void testH5Gget_info_by_name_fileid() { + public void testH5Gget_info_by_name_fileid() + { H5G_info_t info = null; - long gid = _createGroup(H5fid, "/testH5Gcreate"); + long gid = _createGroup(H5fid, "/testH5Gcreate"); assertTrue(gid > 0); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } try { - info = H5.H5Gget_info_by_name(H5fid, "/testH5Gcreate", - HDF5Constants.H5P_DEFAULT); + info = H5.H5Gget_info_by_name(H5fid, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } err.printStackTrace(); fail("H5.H5Gget_info_by_name: " + err); } assertNotNull(info); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } @Test(expected = NullPointerException.class) - public void testH5Gget_info_by_idx_null() throws Throwable { - H5.H5Gget_info_by_idx(-1, null, HDF5Constants.H5_INDEX_NAME, - HDF5Constants.H5_ITER_INC, 1L, HDF5Constants.H5P_DEFAULT); + public void testH5Gget_info_by_idx_null() throws Throwable + { + H5.H5Gget_info_by_idx(-1, null, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 1L, + HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Gget_info_by_idx_invalid() throws Throwable { - H5.H5Gget_info_by_idx(-1, "/testH5Gcreate", HDF5Constants.H5_INDEX_NAME, - HDF5Constants.H5_ITER_INC, 1L, HDF5Constants.H5P_DEFAULT); + public void testH5Gget_info_by_idx_invalid() throws Throwable + { + H5.H5Gget_info_by_idx(-1, "/testH5Gcreate", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, + 1L, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Gget_info_by_idx_not_exists() throws Throwable { - H5.H5Gget_info_by_idx(H5fid, "/testH5Gcreate", - HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 1L, - HDF5Constants.H5P_DEFAULT); + public void testH5Gget_info_by_idx_not_exists() throws Throwable + { + H5.H5Gget_info_by_idx(H5fid, "/testH5Gcreate", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, + 1L, HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Gget_info_by_idx() { + public void testH5Gget_info_by_idx() + { H5G_info_t info = null; - long gid = _createGroup(H5fid, "/testH5Gcreate"); + long gid = _createGroup(H5fid, "/testH5Gcreate"); assertTrue(gid > 0); try { - info = H5.H5Gget_info_by_idx(gid, "/", HDF5Constants.H5_INDEX_NAME, - HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + info = H5.H5Gget_info_by_idx(gid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -343,20 +443,28 @@ public class TestH5Gbasic { } assertNotNull(info); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } } @Test - public void testH5Gget_info_by_idx_fileid() { + public void testH5Gget_info_by_idx_fileid() + { H5G_info_t info = null; - long gid = _createGroup(H5fid, "/testH5Gcreate"); + long gid = _createGroup(H5fid, "/testH5Gcreate"); assertTrue(gid > 0); - try {H5.H5Gclose(gid);} catch (Exception ex) {} + try { + H5.H5Gclose(gid); + } + catch (Exception ex) { + } try { - info = H5.H5Gget_info_by_idx(H5fid, "/", - HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, - HDF5Constants.H5P_DEFAULT); + info = H5.H5Gget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, + 0, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -366,13 +474,14 @@ public class TestH5Gbasic { } @Test(expected = HDF5LibraryException.class) - public void testH5Gflush_invalid() throws Throwable { + public void testH5Gflush_invalid() throws Throwable + { H5.H5Gflush(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Grefresh_invalid() throws Throwable { + public void testH5Grefresh_invalid() throws Throwable + { H5.H5Grefresh(-1); } - } diff --git a/java/test/TestH5Giterate.java b/java/test/TestH5Giterate.java index 388d2ac..eb4b5bf 100644 --- a/java/test/TestH5Giterate.java +++ b/java/test/TestH5Giterate.java @@ -15,6 +15,7 @@ package test; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; + import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5LibraryException; @@ -28,11 +29,13 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Giterate { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "h5ex_g_iterate.hdf"; - long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5fid = HDF5Constants.H5I_INVALID_HID; - private final long _openGroup(long fid, String name) { + private final long _openGroup(long fid, String name) + { long gid = HDF5Constants.H5I_INVALID_HID; try { gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT); @@ -47,14 +50,13 @@ public class TestH5Giterate { } @Before - public void openH5file() - throws HDF5LibraryException, NullPointerException { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void openH5file() throws HDF5LibraryException, NullPointerException + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { - H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, - HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -63,15 +65,21 @@ public class TestH5Giterate { } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } System.out.println(); } @Test - public void testH5Gget_obj_info_all() { + public void testH5Gget_obj_info_all() + { H5G_info_t info = null; long gid = _openGroup(H5fid, "/"); @@ -90,45 +98,46 @@ public class TestH5Giterate { } assertNotNull(info); assertTrue("number of links is empty", info.nlinks > 0); - String objNames[] = new String[(int) info.nlinks]; - int objTypes[] = new int[(int) info.nlinks]; - int lnkTypes[] = new int[(int) info.nlinks]; - H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; + String objNames[] = new String[(int)info.nlinks]; + int objTypes[] = new int[(int)info.nlinks]; + int lnkTypes[] = new int[(int)info.nlinks]; + H5O_token_t objTokens[] = new H5O_token_t[(int)info.nlinks]; int names_found = 0; try { - names_found = H5.H5Gget_obj_info_all(H5fid, "/", objNames, - objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME); + names_found = H5.H5Gget_obj_info_all(H5fid, "/", objNames, objTypes, lnkTypes, objTokens, + HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Gget_obj_info_all: " + err); } - assertTrue("number found[" + names_found + "] different than expected[" - + objNames.length + "]", names_found == objNames.length); + assertTrue("number found[" + names_found + "] different than expected[" + objNames.length + "]", + names_found == objNames.length); for (int i = 0; i < objNames.length; i++) { assertNotNull("name #" + i + " does not exist", objNames[i]); assertTrue(objNames[i].length() > 0); - if (objTypes[i]==HDF5Constants.H5O_TYPE_GROUP) { - assertTrue("Group is index: "+i + " ",i==2); - assertTrue("Group is : "+objNames[i] + " ",objNames[i].compareToIgnoreCase("G1")==0); + if (objTypes[i] == HDF5Constants.H5O_TYPE_GROUP) { + assertTrue("Group is index: " + i + " ", i == 2); + assertTrue("Group is : " + objNames[i] + " ", objNames[i].compareToIgnoreCase("G1") == 0); } - else if (objTypes[i]==HDF5Constants.H5O_TYPE_DATASET) { - assertTrue("Dataset is index: "+i + " ",(i==0)||(i==3)); - if(i==0) - assertTrue("Dataset is : "+objNames[i] + " ",objNames[i].compareToIgnoreCase("DS1")==0); + else if (objTypes[i] == HDF5Constants.H5O_TYPE_DATASET) { + assertTrue("Dataset is index: " + i + " ", (i == 0) || (i == 3)); + if (i == 0) + assertTrue("Dataset is : " + objNames[i] + " ", + objNames[i].compareToIgnoreCase("DS1") == 0); else - assertTrue("Dataset is : "+objNames[i] + " ",objNames[i].compareToIgnoreCase("L1")==0); + assertTrue("Dataset is : " + objNames[i] + " ", + objNames[i].compareToIgnoreCase("L1") == 0); } - else if (objTypes[i]==HDF5Constants.H5O_TYPE_NAMED_DATATYPE) { - assertTrue("Datatype is index: "+i + " ",i==1); - assertTrue("Datatype is : "+objNames[i] + " ",objNames[i].compareToIgnoreCase("DT1")==0); + else if (objTypes[i] == HDF5Constants.H5O_TYPE_NAMED_DATATYPE) { + assertTrue("Datatype is index: " + i + " ", i == 1); + assertTrue("Datatype is : " + objNames[i] + " ", objNames[i].compareToIgnoreCase("DT1") == 0); } else { fail(" Unknown at index: " + i + " " + objNames[i]); } } } - } diff --git a/java/test/TestH5Lbasic.java b/java/test/TestH5Lbasic.java index a28fc3d..c81545b 100644 --- a/java/test/TestH5Lbasic.java +++ b/java/test/TestH5Lbasic.java @@ -20,8 +20,8 @@ import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.callbacks.H5L_iterate_t; import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t; +import hdf.hdf5lib.callbacks.H5L_iterate_t; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5L_info_t; @@ -32,19 +32,19 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Lbasic { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "h5ex_g_iterateL1.hdf"; - long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5fid = HDF5Constants.H5I_INVALID_HID; @Before - public void openH5file() - throws HDF5LibraryException, NullPointerException { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void openH5file() throws HDF5LibraryException, NullPointerException + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { - H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, - HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -53,15 +53,21 @@ public class TestH5Lbasic { } @After - public void closeH5file() throws HDF5LibraryException { + public void closeH5file() throws HDF5LibraryException + { if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } System.out.println(); } @Test - public void testH5Lexists() { + public void testH5Lexists() + { boolean link_exists = false; try { link_exists = H5.H5Lexists(H5fid, "None", HDF5Constants.H5P_DEFAULT); @@ -70,7 +76,7 @@ public class TestH5Lbasic { err.printStackTrace(); fail("H5.H5Lexists: " + err); } - assertFalse("H5Lexists ",link_exists); + assertFalse("H5Lexists ", link_exists); try { link_exists = H5.H5Lexists(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); } @@ -78,7 +84,7 @@ public class TestH5Lbasic { err.printStackTrace(); fail("H5.H5Lexists: " + err); } - assertTrue("H5Lexists ",link_exists); + assertTrue("H5Lexists ", link_exists); try { link_exists = H5.H5Lexists(H5fid, "G1/DS2", HDF5Constants.H5P_DEFAULT); } @@ -86,16 +92,18 @@ public class TestH5Lbasic { err.printStackTrace(); fail("H5.H5Lexists: " + err); } - assertTrue("H5Lexists ",link_exists); + assertTrue("H5Lexists ", link_exists); } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_info_not_exist() throws Throwable { + public void testH5Lget_info_not_exist() throws Throwable + { H5.H5Lget_info(H5fid, "None", HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Lget_info_dataset() { + public void testH5Lget_info_dataset() + { H5L_info_t link_info = null; try { link_info = H5.H5Lget_info(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); @@ -104,12 +112,13 @@ public class TestH5Lbasic { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } - assertFalse("H5Lget_info ",link_info==null); - assertTrue("H5Lget_info link type",link_info.type==HDF5Constants.H5L_TYPE_HARD); + assertFalse("H5Lget_info ", link_info == null); + assertTrue("H5Lget_info link type", link_info.type == HDF5Constants.H5L_TYPE_HARD); } @Test - public void testH5Lget_info_hardlink() { + public void testH5Lget_info_hardlink() + { H5L_info_t link_info = null; try { link_info = H5.H5Lget_info(H5fid, "L1", HDF5Constants.H5P_DEFAULT); @@ -118,43 +127,53 @@ public class TestH5Lbasic { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } - assertFalse("H5Lget_info",link_info==null); - assertTrue("H5Lget_info link type",link_info.type==HDF5Constants.H5L_TYPE_HARD); + assertFalse("H5Lget_info", link_info == null); + assertTrue("H5Lget_info link type", link_info.type == HDF5Constants.H5L_TYPE_HARD); } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_info_by_idx_name_not_exist_name() throws Throwable { - H5.H5Lget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + public void testH5Lget_info_by_idx_name_not_exist_name() throws Throwable + { + H5.H5Lget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, + HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_info_by_idx_name_not_exist_create() throws Throwable { - H5.H5Lget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + public void testH5Lget_info_by_idx_name_not_exist_create() throws Throwable + { + H5.H5Lget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, + HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_info_by_idx_not_exist_name() throws Throwable { - H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT); + public void testH5Lget_info_by_idx_not_exist_name() throws Throwable + { + H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5, + HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_info_by_idx_not_exist_create() throws Throwable { - H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT); + public void testH5Lget_info_by_idx_not_exist_create() throws Throwable + { + H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5, + HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Lget_info_by_idx_n0() { - H5L_info_t link_info = null; + public void testH5Lget_info_by_idx_n0() + { + H5L_info_t link_info = null; H5L_info_t link_info2 = null; try { - link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } - assertFalse("H5Lget_info_by_idx",link_info==null); - assertTrue("H5Lget_info_by_idx link type",link_info.type==HDF5Constants.H5L_TYPE_HARD); + assertFalse("H5Lget_info_by_idx", link_info == null); + assertTrue("H5Lget_info_by_idx link type", link_info.type == HDF5Constants.H5L_TYPE_HARD); try { link_info2 = H5.H5Lget_info(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); } @@ -166,18 +185,20 @@ public class TestH5Lbasic { } @Test - public void testH5Lget_info_by_idx_n3() { - H5L_info_t link_info = null; + public void testH5Lget_info_by_idx_n3() + { + H5L_info_t link_info = null; H5L_info_t link_info2 = null; try { - link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); + link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } - assertFalse("H5Lget_info_by_idx",link_info==null); - assertTrue("H5Lget_info_by_idx link type",link_info.type==HDF5Constants.H5L_TYPE_HARD); + assertFalse("H5Lget_info_by_idx", link_info == null); + assertTrue("H5Lget_info_by_idx link type", link_info.type == HDF5Constants.H5L_TYPE_HARD); try { link_info2 = H5.H5Lget_info(H5fid, "L1", HDF5Constants.H5P_DEFAULT); } @@ -189,44 +210,52 @@ public class TestH5Lbasic { } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_name_by_idx_not_exist() throws Throwable { - H5.H5Lget_name_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + public void testH5Lget_name_by_idx_not_exist() throws Throwable + { + H5.H5Lget_name_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, + HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Lget_name_by_idx_n0() { + public void testH5Lget_name_by_idx_n0() + { String link_name = null; try { - link_name = H5.H5Lget_name_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + link_name = H5.H5Lget_name_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_name_by_idx: " + err); } - assertFalse("H5Lget_name_by_idx ",link_name==null); - assertTrue("Link Name ",link_name.compareTo("DS1")==0); + assertFalse("H5Lget_name_by_idx ", link_name == null); + assertTrue("Link Name ", link_name.compareTo("DS1") == 0); } @Test - public void testH5Lget_name_by_idx_n3() { + public void testH5Lget_name_by_idx_n3() + { String link_name = null; try { - link_name = H5.H5Lget_name_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); + link_name = H5.H5Lget_name_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_name_by_idx: " + err); } - assertFalse("H5Lget_name_by_idx ",link_name==null); - assertTrue("Link Name ",link_name.compareTo("L1")==0); + assertFalse("H5Lget_name_by_idx ", link_name == null); + assertTrue("Link Name ", link_name.compareTo("L1") == 0); } @Test - public void testH5Lvisit() { + public void testH5Lvisit() + { class idata { public String link_name = null; - public int link_type = -1; - idata(String name, int type) { + public int link_type = -1; + idata(String name, int type) + { this.link_name = name; this.link_type = type; } @@ -236,7 +265,8 @@ public class TestH5Lbasic { } H5L_iterate_opdata_t iter_data = new H5L_iter_data(); class H5L_iter_callback implements H5L_iterate_t { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) + { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; @@ -250,21 +280,29 @@ public class TestH5Lbasic { err.printStackTrace(); fail("H5.H5Lvisit: " + err); } - assertFalse("H5Lvisit ",((H5L_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Lvisit "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==5); - assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(0)).link_name,(((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1")==0); - assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(1)).link_name,(((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DT1")==0); - assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(2)).link_name,(((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1")==0); - assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(3)).link_name,(((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1/DS2")==0); - assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(4)).link_name,(((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("L1")==0); + assertFalse("H5Lvisit ", ((H5L_iter_data)iter_data).iterdata.isEmpty()); + assertTrue("H5Lvisit " + ((H5L_iter_data)iter_data).iterdata.size(), + ((H5L_iter_data)iter_data).iterdata.size() == 5); + assertTrue("H5Lvisit " + (((H5L_iter_data)iter_data).iterdata.get(0)).link_name, + (((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1") == 0); + assertTrue("H5Lvisit " + (((H5L_iter_data)iter_data).iterdata.get(1)).link_name, + (((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DT1") == 0); + assertTrue("H5Lvisit " + (((H5L_iter_data)iter_data).iterdata.get(2)).link_name, + (((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1") == 0); + assertTrue("H5Lvisit " + (((H5L_iter_data)iter_data).iterdata.get(3)).link_name, + (((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1/DS2") == 0); + assertTrue("H5Lvisit " + (((H5L_iter_data)iter_data).iterdata.get(4)).link_name, + (((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("L1") == 0); } @Test - public void testH5Lvisit_by_name() { + public void testH5Lvisit_by_name() + { class idata { public String link_name = null; - public int link_type = -1; - idata(String name, int type) { + public int link_type = -1; + idata(String name, int type) + { this.link_name = name; this.link_type = type; } @@ -274,7 +312,8 @@ public class TestH5Lbasic { } H5L_iterate_opdata_t iter_data = new H5L_iter_data(); class H5L_iter_callback implements H5L_iterate_t { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) + { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; @@ -282,23 +321,28 @@ public class TestH5Lbasic { } H5L_iterate_t iter_cb = new H5L_iter_callback(); try { - H5.H5Lvisit_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT); + H5.H5Lvisit_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, + iter_data, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lvisit_by_name: " + err); } - assertFalse("H5Lvisit_by_name ",((H5L_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Lvisit_by_name "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==1); - assertTrue("H5Lvisit_by_name "+(((H5L_iter_data)iter_data).iterdata.get(0)).link_name,(((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS2")==0); + assertFalse("H5Lvisit_by_name ", ((H5L_iter_data)iter_data).iterdata.isEmpty()); + assertTrue("H5Lvisit_by_name " + ((H5L_iter_data)iter_data).iterdata.size(), + ((H5L_iter_data)iter_data).iterdata.size() == 1); + assertTrue("H5Lvisit_by_name " + (((H5L_iter_data)iter_data).iterdata.get(0)).link_name, + (((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS2") == 0); } @Test - public void testH5Literate() { + public void testH5Literate() + { class idata { public String link_name = null; - public int link_type = -1; - idata(String name, int type) { + public int link_type = -1; + idata(String name, int type) + { this.link_name = name; this.link_type = type; } @@ -308,7 +352,8 @@ public class TestH5Lbasic { } H5L_iterate_opdata_t iter_data = new H5L_iter_data(); class H5L_iter_callback implements H5L_iterate_t { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) + { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; @@ -316,26 +361,35 @@ public class TestH5Lbasic { } H5L_iterate_t iter_cb = new H5L_iter_callback(); try { - H5.H5Literate(H5fid, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, iter_cb, iter_data); + H5.H5Literate(H5fid, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, iter_cb, + iter_data); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Literate: " + err); } - assertFalse("H5Literate ",((H5L_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Literate "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==4); - assertTrue("H5Literate "+(((H5L_iter_data)iter_data).iterdata.get(0)).link_name,(((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1")==0); - assertTrue("H5Literate "+(((H5L_iter_data)iter_data).iterdata.get(1)).link_name,(((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DT1")==0); - assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name,(((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1")==0); - assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("L1")==0); + assertFalse("H5Literate ", ((H5L_iter_data)iter_data).iterdata.isEmpty()); + assertTrue("H5Literate " + ((H5L_iter_data)iter_data).iterdata.size(), + ((H5L_iter_data)iter_data).iterdata.size() == 4); + assertTrue("H5Literate " + (((H5L_iter_data)iter_data).iterdata.get(0)).link_name, + (((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1") == 0); + assertTrue("H5Literate " + (((H5L_iter_data)iter_data).iterdata.get(1)).link_name, + (((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DT1") == 0); + assertTrue("H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name, + (((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1") == 0); + assertTrue("H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("L1") == + 0); } @Test - public void testH5Literate_by_name() { + public void testH5Literate_by_name() + { class idata { public String link_name = null; - public int link_type = -1; - idata(String name, int type) { + public int link_type = -1; + idata(String name, int type) + { this.link_name = name; this.link_type = type; } @@ -345,7 +399,8 @@ public class TestH5Lbasic { } H5L_iterate_opdata_t iter_data = new H5L_iter_data(); class H5L_iter_callback implements H5L_iterate_t { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) + { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; @@ -353,15 +408,18 @@ public class TestH5Lbasic { } H5L_iterate_t iter_cb = new H5L_iter_callback(); try { - H5.H5Literate_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT); + H5.H5Literate_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, + iter_cb, iter_data, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Literate_by_name: " + err); } - assertFalse("H5Literate_by_name ",((H5L_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Literate_by_name "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==1); - assertTrue("H5Literate_by_name "+((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS2")==0); + assertFalse("H5Literate_by_name ", ((H5L_iter_data)iter_data).iterdata.isEmpty()); + assertTrue("H5Literate_by_name " + ((H5L_iter_data)iter_data).iterdata.size(), + ((H5L_iter_data)iter_data).iterdata.size() == 1); + assertTrue("H5Literate_by_name " + ((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS2") == + 0); } - } diff --git a/java/test/TestH5Lcreate.java b/java/test/TestH5Lcreate.java index 44af2e5..822323e 100644 --- a/java/test/TestH5Lcreate.java +++ b/java/test/TestH5Lcreate.java @@ -21,8 +21,8 @@ import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.callbacks.H5L_iterate_t; import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t; +import hdf.hdf5lib.callbacks.H5L_iterate_t; import hdf.hdf5lib.exceptions.HDF5Exception; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5L_info_t; @@ -35,21 +35,23 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Lcreate { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_EXTFILE = "h5ex_g_iterateL2.hdf"; - private static final String H5_FILE = "testL.h5"; - private static final int DIM_X = 4; - private static final int DIM_Y = 6; - long H5fcpl = HDF5Constants.H5I_INVALID_HID; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did1 = HDF5Constants.H5I_INVALID_HID; - long H5did2 = HDF5Constants.H5I_INVALID_HID; - long H5gcpl = HDF5Constants.H5I_INVALID_HID; - long H5gid = HDF5Constants.H5I_INVALID_HID; - long[] H5dims = { DIM_X, DIM_Y }; - - private final void _deleteFile(String filename) { + private static final String H5_FILE = "testL.h5"; + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + long H5fcpl = HDF5Constants.H5I_INVALID_HID; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did1 = HDF5Constants.H5I_INVALID_HID; + long H5did2 = HDF5Constants.H5I_INVALID_HID; + long H5gcpl = HDF5Constants.H5I_INVALID_HID; + long H5gid = HDF5Constants.H5I_INVALID_HID; + long[] H5dims = {DIM_X, DIM_Y}; + + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { @@ -62,39 +64,41 @@ public class TestH5Lcreate { } } - private final long _createDataset(long fid, long dsid, String name, long dapl) { + private final long _createDataset(long fid, long dsid, String name, long dapl) + { long did = HDF5Constants.H5I_INVALID_HID; try { - did = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Dcreate: " + err); } - assertTrue("TestH5L._createDataset: ",did > 0); + assertTrue("TestH5L._createDataset: ", did > 0); return did; } - private final long _createGroup(long fid, String name) { + private final long _createGroup(long fid, String name) + { long gid = HDF5Constants.H5I_INVALID_HID; try { H5gcpl = HDF5Constants.H5P_DEFAULT; - gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, - H5gcpl, HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, H5gcpl, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Gcreate: " + err); } - assertTrue("TestH5L._createGroup: ",gid > 0); + assertTrue("TestH5L._createGroup: ", gid > 0); return gid; } - private final void _createHardLink(long fid, long cid, String curname, long did, String dstname, long lcpl, long lapl) { + private final void _createHardLink(long fid, long cid, String curname, long did, String dstname, + long lcpl, long lapl) + { boolean link_exists = false; try { H5.H5Lcreate_hard(cid, curname, did, dstname, lcpl, lapl); @@ -108,7 +112,9 @@ public class TestH5Lcreate { assertTrue("TestH5L._createHardLink ", link_exists); } - private final void _createSoftLink(long fid, String curname, long did, String dstname, long lcpl, long lapl) { + private final void _createSoftLink(long fid, String curname, long did, String dstname, long lcpl, + long lapl) + { boolean link_exists = false; try { H5.H5Lcreate_soft(curname, did, dstname, lcpl, lapl); @@ -122,7 +128,9 @@ public class TestH5Lcreate { assertTrue("TestH5L._createSoftLink ", link_exists); } - private final void _createExternalLink(long fid, String ext_filename, String curname, long did, String dstname, long lcpl, long lapl) { + private final void _createExternalLink(long fid, String ext_filename, String curname, long did, + String dstname, long lcpl, long lapl) + { boolean link_exists = false; try { H5.H5Lcreate_external(ext_filename, curname, did, dstname, lcpl, lapl); @@ -137,111 +145,149 @@ public class TestH5Lcreate { } @Before - public void createH5file() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { H5fcpl = H5.H5Pcreate(HDF5Constants.H5P_FILE_CREATE); - H5.H5Pset_link_creation_order(H5fcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED); - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - H5fcpl, HDF5Constants.H5P_DEFAULT); + H5.H5Pset_link_creation_order(H5fcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED + + HDF5Constants.H5P_CRT_ORDER_INDEXED); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, H5fcpl, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5L.createH5file: " + err); } - assertTrue("TestH5L.createH5file: H5.H5Fcreate: ",H5fid > 0); + assertTrue("TestH5L.createH5file: H5.H5Fcreate: ", H5fid > 0); try { H5dsid = H5.H5Screate_simple(2, H5dims, null); H5did1 = _createDataset(H5fid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT); - H5gid = _createGroup(H5fid, "/G1"); + H5gid = _createGroup(H5fid, "/G1"); H5did2 = _createDataset(H5gid, H5dsid, "DS2", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5L.createH5objs: " + err); } - assertTrue("TestH5L.createH5file: H5.H5Screate_simple: ",H5dsid > 0); - assertTrue("TestH5L.createH5file: H5.H5Gcreate: ",H5gid > 0); + assertTrue("TestH5L.createH5file: H5.H5Screate_simple: ", H5dsid > 0); + assertTrue("TestH5L.createH5file: H5.H5Gcreate: ", H5gid > 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5gid > 0) - try {H5.H5Gclose(H5gid);} catch (Exception ex) {} + try { + H5.H5Gclose(H5gid); + } + catch (Exception ex) { + } if (H5gcpl > 0) - try {H5.H5Pclose(H5gcpl);} catch (Exception ex) {} + try { + H5.H5Pclose(H5gcpl); + } + catch (Exception ex) { + } if (H5did2 > 0) - try {H5.H5Dclose(H5did2);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did2); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5did1 > 0) - try {H5.H5Dclose(H5did1);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did1); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } if (H5fcpl > 0) - try {H5.H5Pclose(H5fcpl);} catch (Exception ex) {} + try { + H5.H5Pclose(H5fcpl); + } + catch (Exception ex) { + } _deleteFile(H5_FILE); System.out.println(); } @Test - public void testH5Lget_info_by_idx_n0_create() { + public void testH5Lget_info_by_idx_n0_create() + { H5L_info_t link_info = null; try { int order = H5.H5Pget_link_creation_order(H5fcpl); - assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED); + assertTrue("creation order :" + order, + order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx_n0_create:H5Pget_link_creation_order " + err); } try { - link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } - assertFalse("H5Lget_info_by_idx ", link_info==null); - assertTrue("H5Lget_info_by_idx link type", link_info.type==HDF5Constants.H5L_TYPE_HARD); + assertFalse("H5Lget_info_by_idx ", link_info == null); + assertTrue("H5Lget_info_by_idx link type", link_info.type == HDF5Constants.H5L_TYPE_HARD); } @Test - public void testH5Lget_info_by_idx_n1_create() { + public void testH5Lget_info_by_idx_n1_create() + { H5L_info_t link_info = null; try { int order = H5.H5Pget_link_creation_order(H5fcpl); - assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED); + assertTrue("creation order :" + order, + order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx_n1_create:H5Pget_link_creation_order " + err); } try { - link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 1, HDF5Constants.H5P_DEFAULT); + link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 1, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } - assertFalse("H5Lget_info_by_idx ", link_info==null); - assertTrue("H5Lget_info_by_idx link type", link_info.type==HDF5Constants.H5L_TYPE_HARD); + assertFalse("H5Lget_info_by_idx ", link_info == null); + assertTrue("H5Lget_info_by_idx link type", link_info.type == HDF5Constants.H5L_TYPE_HARD); } @Test(expected = HDF5LibraryException.class) - public void testH5Lcreate_hard_cur_not_exists() throws Throwable { + public void testH5Lcreate_hard_cur_not_exists() throws Throwable + { H5.H5Lcreate_hard(H5fid, "None", H5fid, "DS1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Lcreate_hard() { + public void testH5Lcreate_hard() + { try { - H5.H5Lcreate_hard(H5fid, "DS1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5.H5Lcreate_hard(H5fid, "DS1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); boolean link_exists = H5.H5Lexists(H5fid, "L1", HDF5Constants.H5P_DEFAULT); assertTrue("testH5Lcreate_hard:H5Lexists ", link_exists); @@ -253,14 +299,19 @@ public class TestH5Lcreate { } @Test(expected = HDF5LibraryException.class) - public void testH5Lcreate_hard_dst_link_exists() throws Throwable { - _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - H5.H5Lcreate_hard(H5fid, "L1", H5fid, "/G1/DS2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + public void testH5Lcreate_hard_dst_link_exists() throws Throwable + { + _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + H5.H5Lcreate_hard(H5fid, "L1", H5fid, "/G1/DS2", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Ldelete_hard_link() { - _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + public void testH5Ldelete_hard_link() + { + _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); try { H5.H5Ldelete(H5fid, "L1", HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); @@ -274,7 +325,8 @@ public class TestH5Lcreate { } @Test - public void testH5Lcreate_soft() { + public void testH5Lcreate_soft() + { try { H5.H5Lcreate_soft("DS1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); @@ -288,13 +340,15 @@ public class TestH5Lcreate { } @Test(expected = HDF5LibraryException.class) - public void testH5Lcreate_soft_dst_link_exists() throws Throwable { + public void testH5Lcreate_soft_dst_link_exists() throws Throwable + { _createSoftLink(H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5.H5Lcreate_soft("L1", H5fid, "/G1/DS2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Ldelete_soft_link() { + public void testH5Ldelete_soft_link() + { _createSoftLink(H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); try { H5.H5Ldelete(H5fid, "L1", HDF5Constants.H5P_DEFAULT); @@ -309,7 +363,8 @@ public class TestH5Lcreate { } @Test - public void testH5Lget_info_softlink() { + public void testH5Lget_info_softlink() + { H5L_info_t link_info = null; _createSoftLink(H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); try { @@ -319,15 +374,16 @@ public class TestH5Lcreate { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } - assertFalse("H5Lget_info", link_info==null); - assertTrue("H5Lget_info link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT); + assertFalse("H5Lget_info", link_info == null); + assertTrue("H5Lget_info link type", link_info.type == HDF5Constants.H5L_TYPE_SOFT); assertTrue("Link Value Size", link_info.val_size > 0); } @Test - public void testH5Lget_value_soft() { + public void testH5Lget_value_soft() + { String[] link_value = {null, null}; - int link_type = -1; + int link_type = -1; _createSoftLink(H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); try { @@ -338,12 +394,13 @@ public class TestH5Lcreate { fail("H5.H5Lget_value: " + err); } assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_SOFT); - assertFalse("H5Lget_value ", link_value[0]==null); - assertTrue("Link Value ", link_value[0].compareTo("/G1/DS2")==0); + assertFalse("H5Lget_value ", link_value[0] == null); + assertTrue("Link Value ", link_value[0].compareTo("/G1/DS2") == 0); } @Test - public void testH5Lcreate_soft_dangle() { + public void testH5Lcreate_soft_dangle() + { try { H5.H5Lcreate_soft("DS3", H5fid, "L2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); @@ -357,7 +414,8 @@ public class TestH5Lcreate { } @Test - public void testH5Ldelete_soft_link_dangle() { + public void testH5Ldelete_soft_link_dangle() + { _createSoftLink(H5fid, "DS3", H5fid, "L2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); try { H5.H5Ldelete(H5fid, "L2", HDF5Constants.H5P_DEFAULT); @@ -372,7 +430,8 @@ public class TestH5Lcreate { } @Test - public void testH5Lget_info_softlink_dangle() { + public void testH5Lget_info_softlink_dangle() + { H5L_info_t link_info = null; _createSoftLink(H5fid, "DS3", H5fid, "L2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); try { @@ -382,15 +441,16 @@ public class TestH5Lcreate { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } - assertFalse("H5Lget_info", link_info==null); - assertTrue("H5Lget_info link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT); + assertFalse("H5Lget_info", link_info == null); + assertTrue("H5Lget_info link type", link_info.type == HDF5Constants.H5L_TYPE_SOFT); assertTrue("Link Value Size", link_info.val_size > 0); } @Test - public void testH5Lget_value_dangle() { - String[] link_value = {null,null}; - int link_type = -1; + public void testH5Lget_value_dangle() + { + String[] link_value = {null, null}; + int link_type = -1; _createSoftLink(H5fid, "DS3", H5fid, "L2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); try { @@ -401,14 +461,16 @@ public class TestH5Lcreate { fail("H5.H5Lget_value: " + err); } assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_SOFT); - assertFalse("H5Lget_value ", link_value[0]==null); - assertTrue("Link Value ", link_value[0].compareTo("DS3")==0); + assertFalse("H5Lget_value ", link_value[0] == null); + assertTrue("Link Value ", link_value[0].compareTo("DS3") == 0); } @Test - public void testH5Lcreate_external() { + public void testH5Lcreate_external() + { try { - H5.H5Lcreate_external(H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5.H5Lcreate_external(H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); boolean link_exists = H5.H5Lexists(H5fid, "L1", HDF5Constants.H5P_DEFAULT); assertTrue("testH5Lcreate_external:H5Lexists ", link_exists); @@ -420,9 +482,11 @@ public class TestH5Lcreate { } @Test - public void testH5Lget_info_externallink() { + public void testH5Lget_info_externallink() + { H5L_info_t link_info = null; - _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); try { link_info = H5.H5Lget_info(H5fid, "L1", HDF5Constants.H5P_DEFAULT); } @@ -430,17 +494,19 @@ public class TestH5Lcreate { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } - assertFalse("H5Lget_info", link_info==null); - assertTrue("H5Lget_info link type", link_info.type==HDF5Constants.H5L_TYPE_EXTERNAL); + assertFalse("H5Lget_info", link_info == null); + assertTrue("H5Lget_info link type", link_info.type == HDF5Constants.H5L_TYPE_EXTERNAL); assertTrue("Link Value Size", link_info.val_size > 0); } @Test - public void testH5Lget_value_external(){ - String[] link_value = {null,null}; - int link_type = -1; + public void testH5Lget_value_external() + { + String[] link_value = {null, null}; + int link_type = -1; - _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); try { link_type = H5.H5Lget_value(H5fid, "L1", link_value, HDF5Constants.H5P_DEFAULT); } @@ -449,18 +515,20 @@ public class TestH5Lcreate { fail("H5.H5Lget_value: " + err); } assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_EXTERNAL); - assertFalse("H5Lget_value ", link_value[0]==null); - assertFalse("H5Lget_value ", link_value[1]==null); - assertTrue("Link Value ", link_value[0].compareTo("DT1")==0); + assertFalse("H5Lget_value ", link_value[0] == null); + assertFalse("H5Lget_value ", link_value[1] == null); + assertTrue("Link Value ", link_value[0].compareTo("DT1") == 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Lcopy_cur_not_exists() throws Throwable { + public void testH5Lcopy_cur_not_exists() throws Throwable + { H5.H5Lcopy(H5fid, "None", H5fid, "DS1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Lcopy() { + public void testH5Lcopy() + { try { H5.H5Lcopy(H5fid, "DS1", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); @@ -474,18 +542,22 @@ public class TestH5Lcreate { } @Test(expected = HDF5LibraryException.class) - public void testH5Lcopy_dst_link_exists() throws Throwable { - _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + public void testH5Lcopy_dst_link_exists() throws Throwable + { + _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Lcopy(H5fid, "CPY1", H5fid, "/G1/DS2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Lmove_cur_not_exists() throws Throwable { + public void testH5Lmove_cur_not_exists() throws Throwable + { H5.H5Lmove(H5fid, "None", H5fid, "DS1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Lmove() { + public void testH5Lmove() + { try { H5.H5Lmove(H5fid, "DS1", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); @@ -501,60 +573,72 @@ public class TestH5Lcreate { } @Test(expected = HDF5LibraryException.class) - public void testH5Lmove_dst_link_exists() throws Throwable { - _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + public void testH5Lmove_dst_link_exists() throws Throwable + { + _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Lmove(H5fid, "CPY1", H5fid, "/G1/DS2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_value_by_idx_not_exist_name() throws Throwable { - String[] link_value = {null,null}; - H5.H5Lget_value_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, link_value, HDF5Constants.H5P_DEFAULT); + public void testH5Lget_value_by_idx_not_exist_name() throws Throwable + { + String[] link_value = {null, null}; + H5.H5Lget_value_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, + link_value, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_value_by_idx_not_exist_create() throws Throwable { - String[] link_value = {null,null}; - H5.H5Lget_value_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, link_value, HDF5Constants.H5P_DEFAULT); + public void testH5Lget_value_by_idx_not_exist_create() throws Throwable + { + String[] link_value = {null, null}; + H5.H5Lget_value_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, + link_value, HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Lget_value_by_idx_n2_name() { + public void testH5Lget_value_by_idx_n2_name() + { H5L_info_t link_info = null; - String[] link_value = {null,null}; - int link_type = -1; + String[] link_value = {null, null}; + int link_type = -1; _createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); try { - link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); + link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } - assertFalse("testH5Lget_value_by_idx_n2 ",link_info==null); - assertTrue("testH5Lget_value_by_idx_n2 link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT); + assertFalse("testH5Lget_value_by_idx_n2 ", link_info == null); + assertTrue("testH5Lget_value_by_idx_n2 link type", link_info.type == HDF5Constants.H5L_TYPE_SOFT); try { - link_type = H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, link_value, HDF5Constants.H5P_DEFAULT); + link_type = + H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, + link_value, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_value_by_idx: " + err); } assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_SOFT); - assertFalse("testH5Lget_value_by_idx_n2 ", link_value[0]==null); - assertTrue("testH5Lget_value_by_idx_n2 Link Value ", link_value[0].compareTo("/G1/DS2")==0); + assertFalse("testH5Lget_value_by_idx_n2 ", link_value[0] == null); + assertTrue("testH5Lget_value_by_idx_n2 Link Value ", link_value[0].compareTo("/G1/DS2") == 0); } @Test - public void testH5Lget_value_by_idx_n2_create() { + public void testH5Lget_value_by_idx_n2_create() + { H5L_info_t link_info = null; - String[] link_value = {null,null}; - int link_type = -1; + String[] link_value = {null, null}; + int link_type = -1; try { int order = H5.H5Pget_link_creation_order(H5fcpl); - assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED); + assertTrue("creation order :" + order, + order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED); } catch (Throwable err) { err.printStackTrace(); @@ -562,116 +646,139 @@ public class TestH5Lcreate { } _createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); try { - link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); + link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } - assertFalse("testH5Lget_value_by_idx_n2 ", link_info==null); - assertTrue("testH5Lget_value_by_idx_n2 link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT); + assertFalse("testH5Lget_value_by_idx_n2 ", link_info == null); + assertTrue("testH5Lget_value_by_idx_n2 link type", link_info.type == HDF5Constants.H5L_TYPE_SOFT); try { - link_type = H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, link_value, HDF5Constants.H5P_DEFAULT); + link_type = + H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 2, link_value, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_value_by_idx: " + err); } assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_SOFT); - assertFalse("testH5Lget_value_by_idx_n2 ", link_value[0]==null); - assertTrue("testH5Lget_value_by_idx_n2 Link Value ", link_value[0].compareTo("/G1/DS2")==0); + assertFalse("testH5Lget_value_by_idx_n2 ", link_value[0] == null); + assertTrue("testH5Lget_value_by_idx_n2 Link Value ", link_value[0].compareTo("/G1/DS2") == 0); } @Test - public void testH5Lget_value_by_idx_external_name() { + public void testH5Lget_value_by_idx_external_name() + { H5L_info_t link_info = null; - String[] link_value = {null,null}; - int link_type = -1; + String[] link_value = {null, null}; + int link_type = -1; - _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); try { - link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); + link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } - assertFalse("testH5Lget_value_by_idx_ext ", link_info==null); - assertTrue("testH5Lget_value_by_idx_ext link type "+link_info.type, link_info.type==HDF5Constants.H5L_TYPE_EXTERNAL); + assertFalse("testH5Lget_value_by_idx_ext ", link_info == null); + assertTrue("testH5Lget_value_by_idx_ext link type " + link_info.type, + link_info.type == HDF5Constants.H5L_TYPE_EXTERNAL); try { - link_type = H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, link_value, HDF5Constants.H5P_DEFAULT); + link_type = + H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, + link_value, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_value_by_idx: " + err); } assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_EXTERNAL); - assertFalse("testH5Lget_value_by_idx_ext ", link_value[0]==null); - assertFalse("testH5Lget_value_by_idx_ext ", link_value[1]==null); - assertTrue("testH5Lget_value_by_idx_ext Link Value ", link_value[0].compareTo("DT1")==0); + assertFalse("testH5Lget_value_by_idx_ext ", link_value[0] == null); + assertFalse("testH5Lget_value_by_idx_ext ", link_value[1] == null); + assertTrue("testH5Lget_value_by_idx_ext Link Value ", link_value[0].compareTo("DT1") == 0); } @Test - public void testH5Lget_value_by_idx_external_create() { + public void testH5Lget_value_by_idx_external_create() + { H5L_info_t link_info = null; - String[] link_value = {null,null}; - int link_type = -1; + String[] link_value = {null, null}; + int link_type = -1; - _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); try { - link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); + link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } - assertFalse("testH5Lget_value_by_idx_ext ", link_info==null); - assertTrue("testH5Lget_value_by_idx_ext link type "+link_info.type, link_info.type==HDF5Constants.H5L_TYPE_EXTERNAL); + assertFalse("testH5Lget_value_by_idx_ext ", link_info == null); + assertTrue("testH5Lget_value_by_idx_ext link type " + link_info.type, + link_info.type == HDF5Constants.H5L_TYPE_EXTERNAL); try { - link_type = H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, link_value, HDF5Constants.H5P_DEFAULT); + link_type = + H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 2, link_value, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_value_by_idx: " + err); } assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_EXTERNAL); - assertFalse("testH5Lget_value_by_idx_ext ", link_value[0]==null); - assertFalse("testH5Lget_value_by_idx_ext ", link_value[1]==null); - assertTrue("testH5Lget_value_by_idx_ext Link Value ", link_value[0].compareTo("DT1")==0); + assertFalse("testH5Lget_value_by_idx_ext ", link_value[0] == null); + assertFalse("testH5Lget_value_by_idx_ext ", link_value[1] == null); + assertTrue("testH5Lget_value_by_idx_ext Link Value ", link_value[0].compareTo("DT1") == 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Ldelete_by_idx_not_exist_name() throws Throwable { - H5.H5Ldelete_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + public void testH5Ldelete_by_idx_not_exist_name() throws Throwable + { + H5.H5Ldelete_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, + HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Ldelete_by_idx_not_exist_create() throws Throwable { - H5.H5Ldelete_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + public void testH5Ldelete_by_idx_not_exist_create() throws Throwable + { + H5.H5Ldelete_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, + HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Ldelete_by_idx_n2_name() { + public void testH5Ldelete_by_idx_n2_name() + { H5L_info_t link_info = null; _createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); try { - link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); + link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } - assertFalse("testH5Ldelete_by_idx_n2 ", link_info==null); - assertTrue("testH5Ldelete_by_idx_n2 link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT); + assertFalse("testH5Ldelete_by_idx_n2 ", link_info == null); + assertTrue("testH5Ldelete_by_idx_n2 link type", link_info.type == HDF5Constants.H5L_TYPE_SOFT); try { - H5.H5Ldelete_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); + H5.H5Ldelete_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Ldelete_by_idx: " + err); } try { - link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); + link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); } catch (HDF5LibraryException err) { link_info = null; @@ -680,31 +787,35 @@ public class TestH5Lcreate { err.printStackTrace(); fail("H5.H5Ldelete_by_idx: " + err); } - assertTrue("testH5Ldelete_by_idx_n2 ",link_info==null); + assertTrue("testH5Ldelete_by_idx_n2 ", link_info == null); } @Test - public void testH5Ldelete_by_idx_n2_create() { + public void testH5Ldelete_by_idx_n2_create() + { H5L_info_t link_info = null; _createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); try { - link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); + link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } - assertFalse("testH5Ldelete_by_idx_n2 ", link_info==null); - assertTrue("testH5Ldelete_by_idx_n2 link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT); + assertFalse("testH5Ldelete_by_idx_n2 ", link_info == null); + assertTrue("testH5Ldelete_by_idx_n2 link type", link_info.type == HDF5Constants.H5L_TYPE_SOFT); try { - H5.H5Ldelete_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); + H5.H5Ldelete_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Ldelete_by_idx: " + err); } try { - link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); + link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT); } catch (HDF5LibraryException err) { link_info = null; @@ -713,28 +824,33 @@ public class TestH5Lcreate { err.printStackTrace(); fail("H5.H5Ldelete_by_idx: " + err); } - assertTrue("testH5Ldelete_by_idx_n2 ",link_info==null); + assertTrue("testH5Ldelete_by_idx_n2 ", link_info == null); } @Test - public void testH5Lvisit_create() { + public void testH5Lvisit_create() + { try { int order = H5.H5Pget_link_creation_order(H5fcpl); - assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED); + assertTrue("creation order :" + order, + order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lvisit_create: H5Pget_link_creation_order " + err); } - _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); _createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); class idata { public String link_name = null; - public int link_type = -1; - idata(String name, int type) { + public int link_type = -1; + idata(String name, int type) + { this.link_name = name; this.link_type = type; } @@ -744,7 +860,8 @@ public class TestH5Lcreate { } H5L_iterate_opdata_t iter_data = new H5L_iter_data(); class H5L_iter_callback implements H5L_iterate_t { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) + { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; @@ -752,41 +869,60 @@ public class TestH5Lcreate { } H5L_iterate_t iter_cb = new H5L_iter_callback(); try { - H5.H5Lvisit(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, iter_cb, iter_data); + H5.H5Lvisit(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, iter_cb, + iter_data); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lvisit: " + err); } - assertFalse("H5Lvisit ",((H5L_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Lvisit "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==6); - assertTrue("H5Lvisit "+((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1")==0); - assertTrue("H5Lvisit "+((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("G1")==0); - assertTrue("H5Lvisit "+((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1/DS2")==0); - assertTrue("H5Lvisit "+((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("CPY1")==0); - assertTrue("H5Lvisit "+((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("LE")==0); - assertTrue("H5Lvisit "+((idata)((H5L_iter_data)iter_data).iterdata.get(5)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(5)).link_name.compareToIgnoreCase("LS")==0); + assertFalse("H5Lvisit ", ((H5L_iter_data)iter_data).iterdata.isEmpty()); + assertTrue("H5Lvisit " + ((H5L_iter_data)iter_data).iterdata.size(), + ((H5L_iter_data)iter_data).iterdata.size() == 6); + assertTrue("H5Lvisit " + ((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1") == + 0); + assertTrue("H5Lvisit " + ((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("G1") == + 0); + assertTrue( + "H5Lvisit " + ((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1/DS2") == 0); + assertTrue( + "H5Lvisit " + ((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("CPY1") == 0); + assertTrue("H5Lvisit " + ((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("LE") == + 0); + assertTrue("H5Lvisit " + ((idata)((H5L_iter_data)iter_data).iterdata.get(5)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(5)).link_name.compareToIgnoreCase("LS") == + 0); } @Test - public void testH5Literate_create() { + public void testH5Literate_create() + { try { int order = H5.H5Pget_link_creation_order(H5fcpl); - assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED); + assertTrue("creation order :" + order, + order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Literate_create: H5Pget_link_creation_order " + err); } - _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); _createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); class idata { public String link_name = null; - public int link_type = -1; - idata(String name, int type) { + public int link_type = -1; + idata(String name, int type) + { this.link_name = name; this.link_type = type; } @@ -796,7 +932,8 @@ public class TestH5Lcreate { } H5L_iterate_opdata_t iter_data = new H5L_iter_data(); class H5L_iter_callback implements H5L_iterate_t { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) + { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; @@ -804,19 +941,30 @@ public class TestH5Lcreate { } H5L_iterate_t iter_cb = new H5L_iter_callback(); try { - H5.H5Literate(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, iter_cb, iter_data); + H5.H5Literate(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, iter_cb, + iter_data); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Literate: " + err); } - assertFalse("H5Literate ",((H5L_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Literate "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==5); - assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1")==0); - assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("G1")==0); - assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("CPY1")==0); - assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("LE")==0); - assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("LS")==0); + assertFalse("H5Literate ", ((H5L_iter_data)iter_data).iterdata.isEmpty()); + assertTrue("H5Literate " + ((H5L_iter_data)iter_data).iterdata.size(), + ((H5L_iter_data)iter_data).iterdata.size() == 5); + assertTrue("H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1") == + 0); + assertTrue("H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("G1") == + 0); + assertTrue( + "H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("CPY1") == 0); + assertTrue("H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("LE") == + 0); + assertTrue("H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name, + ((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("LS") == + 0); } - } diff --git a/java/test/TestH5Lparams.java b/java/test/TestH5Lparams.java index 30ee242..78de663 100644 --- a/java/test/TestH5Lparams.java +++ b/java/test/TestH5Lparams.java @@ -13,6 +13,7 @@ package test; import static org.junit.Assert.assertTrue; + import hdf.hdf5lib.H5; import hdf.hdf5lib.exceptions.HDF5LibraryException; @@ -23,206 +24,246 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Lparams { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); @Before - public void checkOpenIDs() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void checkOpenIDs() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @After - public void nextTestName() { + public void nextTestName() + { System.out.println(); } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_value_invalid() throws Throwable { + public void testH5Lget_value_invalid() throws Throwable + { H5.H5Lget_value(-1, "Bogus", null, -1); } @Test(expected = NullPointerException.class) - public void testH5Lget_value_null() throws Throwable { + public void testH5Lget_value_null() throws Throwable + { H5.H5Lget_value(-1, null, null, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Lexists_invalid() throws Throwable { + public void testH5Lexists_invalid() throws Throwable + { H5.H5Lexists(-1, "Bogus", -1); } @Test(expected = NullPointerException.class) - public void testH5Lexists_null() throws Throwable { + public void testH5Lexists_null() throws Throwable + { H5.H5Lexists(-1, null, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_info_invalid() throws Throwable { + public void testH5Lget_info_invalid() throws Throwable + { H5.H5Lget_info(-1, "Bogus", -1); } @Test(expected = NullPointerException.class) - public void testH5Lget_info_null() throws Throwable { + public void testH5Lget_info_null() throws Throwable + { H5.H5Lget_info(-1, null, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_info_by_idx_invalid() throws Throwable { + public void testH5Lget_info_by_idx_invalid() throws Throwable + { H5.H5Lget_info_by_idx(-1, "Bogus", -1, -1, -1L, -1); } @Test(expected = NullPointerException.class) - public void testH5Lget_info_by_idx_null() throws Throwable { + public void testH5Lget_info_by_idx_null() throws Throwable + { H5.H5Lget_info_by_idx(-1, null, 0, 0, 0L, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_name_by_idx_invalid() throws Throwable { + public void testH5Lget_name_by_idx_invalid() throws Throwable + { H5.H5Lget_name_by_idx(-1, "Bogus", -1, -1, -1L, -1); } @Test(expected = NullPointerException.class) - public void testH5Lget_name_by_idx_null() throws Throwable { + public void testH5Lget_name_by_idx_null() throws Throwable + { H5.H5Lget_name_by_idx(-1, null, 0, 0, 0L, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Lcreate_hard_invalid() throws Throwable { + public void testH5Lcreate_hard_invalid() throws Throwable + { H5.H5Lcreate_hard(-1, "Bogus", -1, "Bogus", -1, -1); } @Test(expected = NullPointerException.class) - public void testH5Lcreate_hard_null_current() throws Throwable { + public void testH5Lcreate_hard_null_current() throws Throwable + { H5.H5Lcreate_hard(-1, null, 0, "Bogus", 0, 0); } @Test(expected = NullPointerException.class) - public void testH5Lcreate_hard_null_dest() throws Throwable { + public void testH5Lcreate_hard_null_dest() throws Throwable + { H5.H5Lcreate_hard(-1, "Bogus", 0, null, 0, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Ldelete_invalid() throws Throwable { + public void testH5Ldelete_invalid() throws Throwable + { H5.H5Ldelete(-1, "Bogus", -1); } @Test(expected = NullPointerException.class) - public void testH5Ldelete_null() throws Throwable { + public void testH5Ldelete_null() throws Throwable + { H5.H5Ldelete(-1, null, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Lcreate_soft_invalid() throws Throwable { - H5.H5Lcreate_soft( "Bogus", -1, "Bogus", -1, -1); + public void testH5Lcreate_soft_invalid() throws Throwable + { + H5.H5Lcreate_soft("Bogus", -1, "Bogus", -1, -1); } @Test(expected = NullPointerException.class) - public void testH5Lcreate_soft_null_current() throws Throwable { + public void testH5Lcreate_soft_null_current() throws Throwable + { H5.H5Lcreate_soft(null, 0, "Bogus", 0, 0); } @Test(expected = NullPointerException.class) - public void testH5Lcreate_soft_null_dest() throws Throwable { + public void testH5Lcreate_soft_null_dest() throws Throwable + { H5.H5Lcreate_soft("Bogus", 0, null, 0, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Lcreate_external_invalid() throws Throwable { + public void testH5Lcreate_external_invalid() throws Throwable + { H5.H5Lcreate_external("PathToFile", "Bogus", -1, "Bogus", -1, -1); } @Test(expected = NullPointerException.class) - public void testH5Lcreate_external_null_file() throws Throwable { + public void testH5Lcreate_external_null_file() throws Throwable + { H5.H5Lcreate_external(null, "Bogus", 0, "Bogus", 0, 0); } @Test(expected = NullPointerException.class) - public void testH5Lcreate_external_null_current() throws Throwable { + public void testH5Lcreate_external_null_current() throws Throwable + { H5.H5Lcreate_external("PathToFile", null, 0, "Bogus", 0, 0); } @Test(expected = NullPointerException.class) - public void testH5Lcreate_external_null_dest() throws Throwable { + public void testH5Lcreate_external_null_dest() throws Throwable + { H5.H5Lcreate_external("PathToFile", "Bogus", 0, null, 0, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Lcopy_invalid() throws Throwable { + public void testH5Lcopy_invalid() throws Throwable + { H5.H5Lcopy(-1, "Bogus", -1, "Bogus", -1, -1); } @Test(expected = NullPointerException.class) - public void testH5Lcopy_null_current() throws Throwable { + public void testH5Lcopy_null_current() throws Throwable + { H5.H5Lcopy(-1, null, 0, "Bogus", 0, 0); } @Test(expected = NullPointerException.class) - public void testH5Lcopy_null_dest() throws Throwable { + public void testH5Lcopy_null_dest() throws Throwable + { H5.H5Lcopy(-1, "Bogus", 0, null, 0, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Lmove_invalid() throws Throwable { + public void testH5Lmove_invalid() throws Throwable + { H5.H5Lmove(-1, "Bogus", -1, "Bogus", -1, -1); } @Test(expected = NullPointerException.class) - public void testH5Lmove_null_current() throws Throwable { + public void testH5Lmove_null_current() throws Throwable + { H5.H5Lmove(-1, null, 0, "Bogus", 0, 0); } @Test(expected = NullPointerException.class) - public void testH5Lmove_null_dest() throws Throwable { + public void testH5Lmove_null_dest() throws Throwable + { H5.H5Lmove(-1, "Bogus", 0, null, 0, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Lget_value_by_idx_invalid() throws Throwable { + public void testH5Lget_value_by_idx_invalid() throws Throwable + { H5.H5Lget_value_by_idx(-1, "Bogus", -1, -1, -1L, null, -1); } @Test(expected = NullPointerException.class) - public void testH5Lget_value_by_idx_null() throws Throwable { + public void testH5Lget_value_by_idx_null() throws Throwable + { H5.H5Lget_value_by_idx(-1, null, 0, 0, 0L, null, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Ldelete_by_idx_invalid() throws Throwable { + public void testH5Ldelete_by_idx_invalid() throws Throwable + { H5.H5Ldelete_by_idx(-1, "Bogus", -1, -1, -1L, -1); } @Test(expected = NullPointerException.class) - public void testH5Ldelete_by_idx_null() throws Throwable { + public void testH5Ldelete_by_idx_null() throws Throwable + { H5.H5Ldelete_by_idx(-1, null, 0, 0, 0L, 0); } @Test(expected = NullPointerException.class) - public void testH5Lvisit_null() throws Throwable { + public void testH5Lvisit_null() throws Throwable + { H5.H5Lvisit(-1, -1, -1, null, null); } @Test(expected = NullPointerException.class) - public void testH5Lvisit_by_name_nullname() throws Throwable { + public void testH5Lvisit_by_name_nullname() throws Throwable + { H5.H5Lvisit_by_name(-1, null, -1, -1, null, null, -1); } @Test(expected = NullPointerException.class) - public void testH5Lvisit_by_name_null() throws Throwable { + public void testH5Lvisit_by_name_null() throws Throwable + { H5.H5Lvisit_by_name(-1, "Bogus", -1, -1, null, null, -1); } @Test(expected = NullPointerException.class) - public void testH5Literate_null() throws Throwable { + public void testH5Literate_null() throws Throwable + { H5.H5Literate(-1, -1, -1, -1, null, null); } @Test(expected = NullPointerException.class) - public void testH5Literate_by_name_nullname() throws Throwable { + public void testH5Literate_by_name_nullname() throws Throwable + { H5.H5Literate_by_name(-1, null, -1, -1, -1, null, null, -1); } @Test(expected = NullPointerException.class) - public void testH5Literate_by_name_null() throws Throwable { + public void testH5Literate_by_name_null() throws Throwable + { H5.H5Literate_by_name(-1, "Bogus", -1, -1, -1, null, null, -1); } - } diff --git a/java/test/TestH5Obasic.java b/java/test/TestH5Obasic.java index 350b7aa..cac2e6a 100644 --- a/java/test/TestH5Obasic.java +++ b/java/test/TestH5Obasic.java @@ -20,13 +20,13 @@ import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.callbacks.H5O_iterate_t; import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t; +import hdf.hdf5lib.callbacks.H5O_iterate_t; import hdf.hdf5lib.exceptions.HDF5LibraryException; +import hdf.hdf5lib.structs.H5O_hdr_info_t; import hdf.hdf5lib.structs.H5O_info_t; import hdf.hdf5lib.structs.H5O_native_info_t; import hdf.hdf5lib.structs.H5O_token_t; -import hdf.hdf5lib.structs.H5O_hdr_info_t; import hdf.hdf5lib.structs.H5_ih_info_t; import org.junit.After; @@ -36,21 +36,21 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Obasic { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "h5ex_g_iterateO1.hdf"; private static H5O_token_t H5la_ds1 = null; - private static H5O_token_t H5la_l1 = null; - long H5fid = HDF5Constants.H5I_INVALID_HID; + private static H5O_token_t H5la_l1 = null; + long H5fid = HDF5Constants.H5I_INVALID_HID; @Before - public void openH5file() - throws HDF5LibraryException, NullPointerException { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void openH5file() throws HDF5LibraryException, NullPointerException + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { - H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, - HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -59,103 +59,136 @@ public class TestH5Obasic { } @After - public void closeH5file() throws HDF5LibraryException { + public void closeH5file() throws HDF5LibraryException + { if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } System.out.println(); } @Test(expected = HDF5LibraryException.class) - public void testH5Oopen_not_exists() throws Throwable { + public void testH5Oopen_not_exists() throws Throwable + { long oid = HDF5Constants.H5I_INVALID_HID; oid = H5.H5Oopen(H5fid, "Never_created", HDF5Constants.H5P_DEFAULT); - try {H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } @Test - public void testH5Oget_info_dataset() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oget_info_dataset() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_info_t obj_info = null; try { - oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } - assertFalse("H5Oget_info ",obj_info==null); - assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); - try {H5.H5Oclose(oid);} catch (Exception ex) {} + assertFalse("H5Oget_info ", obj_info == null); + assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET); + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } @Test - public void testH5Oget_info_hardlink() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oget_info_hardlink() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_info_t obj_info = null; try { - oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } - assertFalse("H5Oget_info ",obj_info==null); - assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); - try {H5.H5Oclose(oid);} catch (Exception ex) {} + assertFalse("H5Oget_info ", obj_info == null); + assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET); + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } @Test - public void testH5Oget_info_group() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oget_info_group() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_info_t obj_info = null; try { - oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } - assertFalse("H5Oget_info ",obj_info==null); - assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_GROUP); - try {H5.H5Oclose(oid);} catch (Exception ex) {} + assertFalse("H5Oget_info ", obj_info == null); + assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_GROUP); + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } @Test - public void testH5Oget_info_datatype() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oget_info_datatype() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_info_t obj_info = null; try { - oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } - assertFalse("H5Oget_info ",obj_info==null); - assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_NAMED_DATATYPE); - try {H5.H5Oclose(oid);} catch (Exception ex) {} + assertFalse("H5Oget_info ", obj_info == null); + assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_NAMED_DATATYPE); + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_info_by_name_not_exist_name() throws Throwable { + public void testH5Oget_info_by_name_not_exist_name() throws Throwable + { H5.H5Oget_info_by_name(H5fid, "None", HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_info_by_name_not_exists() throws Throwable { + public void testH5Oget_info_by_name_not_exists() throws Throwable + { H5.H5Oget_info_by_name(H5fid, "Bogus", HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Oget_info_by_name_dataset() { + public void testH5Oget_info_by_name_dataset() + { H5O_info_t obj_info = null; try { @@ -165,12 +198,13 @@ public class TestH5Obasic { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } - assertFalse("H5Oget_info ",obj_info==null); - assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); + assertFalse("H5Oget_info ", obj_info == null); + assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET); } @Test - public void testH5Oget_info_by_name_hardlink() { + public void testH5Oget_info_by_name_hardlink() + { H5O_info_t obj_info = null; try { obj_info = H5.H5Oget_info_by_name(H5fid, "L1", HDF5Constants.H5P_DEFAULT); @@ -179,12 +213,13 @@ public class TestH5Obasic { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } - assertFalse("H5Oget_info ",obj_info==null); - assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); + assertFalse("H5Oget_info ", obj_info == null); + assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET); } @Test - public void testH5Oget_info_by_name_group() { + public void testH5Oget_info_by_name_group() + { H5O_info_t obj_info = null; try { obj_info = H5.H5Oget_info_by_name(H5fid, "G1", HDF5Constants.H5P_DEFAULT); @@ -193,12 +228,13 @@ public class TestH5Obasic { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } - assertFalse("H5Oget_info ",obj_info==null); - assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_GROUP); + assertFalse("H5Oget_info ", obj_info == null); + assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_GROUP); } @Test - public void testH5Oget_info_by_name_datatype() { + public void testH5Oget_info_by_name_datatype() + { H5O_info_t obj_info = null; try { obj_info = H5.H5Oget_info_by_name(H5fid, "DT1", HDF5Constants.H5P_DEFAULT); @@ -207,36 +243,45 @@ public class TestH5Obasic { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } - assertFalse("H5Oget_info ",obj_info==null); - assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_NAMED_DATATYPE); + assertFalse("H5Oget_info ", obj_info == null); + assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_NAMED_DATATYPE); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_info_by_idx_name_not_exist_name() throws Throwable { - H5.H5Oget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + public void testH5Oget_info_by_idx_name_not_exist_name() throws Throwable + { + H5.H5Oget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, + HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_info_by_idx_name_not_exist_create() throws Throwable { - H5.H5Oget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + public void testH5Oget_info_by_idx_name_not_exist_create() throws Throwable + { + H5.H5Oget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, + HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_info_by_idx_not_exist_name() throws Throwable { - H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT); + public void testH5Oget_info_by_idx_not_exist_name() throws Throwable + { + H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5, + HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_info_by_idx_not_exist_create() throws Throwable { - H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT); + public void testH5Oget_info_by_idx_not_exist_create() throws Throwable + { + H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5, + HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Oget_info_by_idx_n0() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oget_info_by_idx_n0() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_info_t obj_info = null; try { - oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { @@ -244,25 +289,32 @@ public class TestH5Obasic { fail("testH5Oget_info_by_idx_n0:H5.H5Oget_info: " + err); } H5la_ds1 = obj_info.token; - try {H5.H5Oclose(oid);} catch (Exception ex) {} try { - obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + H5.H5Oclose(oid); + } + catch (Exception ex) { + } + try { + obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oget_info_by_idx_n0:H5.H5Oget_info_by_idx: " + err); } - assertFalse("testH5Oget_info_by_idx_n0:H5Oget_info_by_idx ",obj_info==null); - assertTrue("testH5Oget_info_by_idx_n0:H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); + assertFalse("testH5Oget_info_by_idx_n0:H5Oget_info_by_idx ", obj_info == null); + assertTrue("testH5Oget_info_by_idx_n0:H5Oget_info_by_idx link type", + obj_info.type == HDF5Constants.H5O_TYPE_DATASET); assertTrue("testH5Oget_info_by_idx_n0:Link Object token", obj_info.token.equals(H5la_ds1)); } @Test - public void testH5Oget_info_by_idx_n3() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oget_info_by_idx_n3() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_info_t obj_info = null; try { - oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { @@ -270,26 +322,33 @@ public class TestH5Obasic { fail("testH5Oget_info_by_idx_n3:H5.H5Oget_info: " + err); } H5la_l1 = obj_info.token; - try {H5.H5Oclose(oid);} catch (Exception ex) {} try { - obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); + H5.H5Oclose(oid); + } + catch (Exception ex) { + } + try { + obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oget_info_by_idx_n3:H5.H5Oget_info_by_idx: " + err); } - assertFalse("testH5Oget_info_by_idx_n3:H5Oget_info_by_idx ",obj_info==null); - assertTrue("testH5Oget_info_by_idx_n3:H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); + assertFalse("testH5Oget_info_by_idx_n3:H5Oget_info_by_idx ", obj_info == null); + assertTrue("testH5Oget_info_by_idx_n3:H5Oget_info_by_idx link type", + obj_info.type == HDF5Constants.H5O_TYPE_DATASET); assertTrue("testH5Oget_info_by_idx_n3:Link Object Token", obj_info.token.equals(H5la_l1)); } @Test - public void testH5Oget_native_info_dataset() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oget_native_info_dataset() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_native_info_t native_info = null; try { - oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); native_info = H5.H5Oget_native_info(oid); } catch (Throwable err) { @@ -300,16 +359,21 @@ public class TestH5Obasic { assertFalse("H5Oget_native_info ", native_info.hdr_info == null); assertFalse("H5Oget_native_info ", native_info.obj_info == null); assertFalse("H5Oget_native_info ", native_info.attr_info == null); - try {H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } @Test - public void testH5Oget_native_info_hardlink() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oget_native_info_hardlink() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_native_info_t native_info = null; try { - oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); native_info = H5.H5Oget_native_info(oid); } catch (Throwable err) { @@ -320,16 +384,21 @@ public class TestH5Obasic { assertFalse("H5Oget_native_info ", native_info.hdr_info == null); assertFalse("H5Oget_native_info ", native_info.obj_info == null); assertFalse("H5Oget_native_info ", native_info.attr_info == null); - try {H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } @Test - public void testH5Oget_native_info_group() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oget_native_info_group() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_native_info_t native_info = null; try { - oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT); native_info = H5.H5Oget_native_info(oid); } catch (Throwable err) { @@ -340,16 +409,21 @@ public class TestH5Obasic { assertFalse("H5Oget_native_info ", native_info.hdr_info == null); assertFalse("H5Oget_native_info ", native_info.obj_info == null); assertFalse("H5Oget_native_info ", native_info.attr_info == null); - try {H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } @Test - public void testH5Oget_native_info_datatype() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oget_native_info_datatype() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_native_info_t native_info = null; try { - oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT); native_info = H5.H5Oget_native_info(oid); } catch (Throwable err) { @@ -360,21 +434,28 @@ public class TestH5Obasic { assertFalse("H5Oget_native_info ", native_info.hdr_info == null); assertFalse("H5Oget_native_info ", native_info.obj_info == null); assertFalse("H5Oget_native_info ", native_info.attr_info == null); - try {H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_native_info_by_name_not_exist_name() throws Throwable { + public void testH5Oget_native_info_by_name_not_exist_name() throws Throwable + { H5.H5Oget_native_info_by_name(H5fid, "None", HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_native_info_by_name_not_exists() throws Throwable { + public void testH5Oget_native_info_by_name_not_exists() throws Throwable + { H5.H5Oget_native_info_by_name(H5fid, "Bogus", HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Oget_native_info_by_name_dataset() { + public void testH5Oget_native_info_by_name_dataset() + { H5O_native_info_t native_info = null; try { @@ -391,7 +472,8 @@ public class TestH5Obasic { } @Test - public void testH5Oget_native_info_by_name_hardlink() { + public void testH5Oget_native_info_by_name_hardlink() + { H5O_native_info_t native_info = null; try { @@ -408,7 +490,8 @@ public class TestH5Obasic { } @Test - public void testH5Oget_native_info_by_name_group() { + public void testH5Oget_native_info_by_name_group() + { H5O_native_info_t native_info = null; try { @@ -425,7 +508,8 @@ public class TestH5Obasic { } @Test - public void testH5Oget_native_info_by_name_datatype() { + public void testH5Oget_native_info_by_name_datatype() + { H5O_native_info_t native_info = null; try { @@ -442,35 +526,44 @@ public class TestH5Obasic { } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_native_info_by_idx_name_not_exist_name() throws Throwable { - H5.H5Oget_native_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + public void testH5Oget_native_info_by_idx_name_not_exist_name() throws Throwable + { + H5.H5Oget_native_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, + HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_native_info_by_idx_name_not_exist_create() throws Throwable { - H5.H5Oget_native_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + public void testH5Oget_native_info_by_idx_name_not_exist_create() throws Throwable + { + H5.H5Oget_native_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_native_info_by_idx_not_exist_name() throws Throwable { - H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT); + public void testH5Oget_native_info_by_idx_not_exist_name() throws Throwable + { + H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5, + HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_native_info_by_idx_not_exist_create() throws Throwable { - H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT); + public void testH5Oget_native_info_by_idx_not_exist_create() throws Throwable + { + H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, + 5, HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Oget_native_info_by_idx_n0() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oget_native_info_by_idx_n0() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_native_info_t native_info = null; H5O_hdr_info_t ohdr; H5_ih_info_t oinfo; H5_ih_info_t ainfo; try { - oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); native_info = H5.H5Oget_native_info(oid); } catch (Throwable err) { @@ -478,14 +571,20 @@ public class TestH5Obasic { fail("testH5Oget_native_info_by_idx_n0:H5.H5Oget_native_info: " + err); } - ohdr = native_info.hdr_info; + ohdr = native_info.hdr_info; oinfo = native_info.obj_info; ainfo = native_info.attr_info; - try {H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } try { - native_info = H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + native_info = + H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -501,15 +600,16 @@ public class TestH5Obasic { } @Test - public void testH5Oget_native_info_by_idx_n3() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oget_native_info_by_idx_n3() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_native_info_t native_info = null; H5O_hdr_info_t ohdr; H5_ih_info_t oinfo; H5_ih_info_t ainfo; try { - oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); native_info = H5.H5Oget_native_info(oid); } catch (Throwable err) { @@ -517,14 +617,20 @@ public class TestH5Obasic { fail("testH5Oget_native_info_by_idx_n3:H5.H5Oget_native_info: " + err); } - ohdr = native_info.hdr_info; + ohdr = native_info.hdr_info; oinfo = native_info.obj_info; ainfo = native_info.attr_info; - try {H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } try { - native_info = H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); + native_info = + H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, + HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -540,11 +646,13 @@ public class TestH5Obasic { } @Test - public void testH5Ovisit() { + public void testH5Ovisit() + { class idata { public String link_name = null; - public int link_type = -1; - idata(String name, int type) { + public int link_type = -1; + idata(String name, int type) + { this.link_name = name; this.link_type = type; } @@ -554,7 +662,8 @@ public class TestH5Obasic { } H5O_iterate_opdata_t iter_data = new H5O_iter_data(); class H5O_iter_callback implements H5O_iterate_t { - public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) { + public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) + { idata id = new idata(name, info.type); ((H5O_iter_data)op_data).iterdata.add(id); return 0; @@ -568,22 +677,31 @@ public class TestH5Obasic { err.printStackTrace(); fail("H5.H5Ovisit: " + err); } - assertFalse("H5Ovisit ",((H5O_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Ovisit "+((H5O_iter_data)iter_data).iterdata.size(),((H5O_iter_data)iter_data).iterdata.size()==5); - assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(0)).link_name,(((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".")==0); - assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(1)).link_name,(((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS1")==0); - assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(2)).link_name,(((H5O_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("DT1")==0); - assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(3)).link_name,(((H5O_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1")==0); - assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(4)).link_name,(((H5O_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("G1/DS2")==0); -// assertTrue("H5Ovisit "+((idata)((H5O_iter_data)iter_data).iterdata.get(5)).link_name,((idata)((H5O_iter_data)iter_data).iterdata.get(5)).link_name.compareToIgnoreCase("L1")==0); + assertFalse("H5Ovisit ", ((H5O_iter_data)iter_data).iterdata.isEmpty()); + assertTrue("H5Ovisit " + ((H5O_iter_data)iter_data).iterdata.size(), + ((H5O_iter_data)iter_data).iterdata.size() == 5); + assertTrue("H5Ovisit " + (((H5O_iter_data)iter_data).iterdata.get(0)).link_name, + (((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".") == 0); + assertTrue("H5Ovisit " + (((H5O_iter_data)iter_data).iterdata.get(1)).link_name, + (((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS1") == 0); + assertTrue("H5Ovisit " + (((H5O_iter_data)iter_data).iterdata.get(2)).link_name, + (((H5O_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("DT1") == 0); + assertTrue("H5Ovisit " + (((H5O_iter_data)iter_data).iterdata.get(3)).link_name, + (((H5O_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1") == 0); + assertTrue("H5Ovisit " + (((H5O_iter_data)iter_data).iterdata.get(4)).link_name, + (((H5O_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("G1/DS2") == 0); + // assertTrue("H5Ovisit + // "+((idata)((H5O_iter_data)iter_data).iterdata.get(5)).link_name,((idata)((H5O_iter_data)iter_data).iterdata.get(5)).link_name.compareToIgnoreCase("L1")==0); } @Test - public void testH5Ovisit_by_name() { + public void testH5Ovisit_by_name() + { class idata { public String link_name = null; - public int link_type = -1; - idata(String name, int type) { + public int link_type = -1; + idata(String name, int type) + { this.link_name = name; this.link_type = type; } @@ -593,7 +711,8 @@ public class TestH5Obasic { } H5O_iterate_opdata_t iter_data = new H5O_iter_data(); class H5O_iter_callback implements H5O_iterate_t { - public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) { + public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) + { idata id = new idata(name, info.type); ((H5O_iter_data)op_data).iterdata.add(id); return 0; @@ -601,20 +720,25 @@ public class TestH5Obasic { } H5O_iterate_t iter_cb = new H5O_iter_callback(); try { - H5.H5Ovisit_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT); + H5.H5Ovisit_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, + iter_data, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Ovisit_by_name: " + err); } - assertFalse("H5Ovisit_by_name ",((H5O_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Ovisit_by_name "+((H5O_iter_data)iter_data).iterdata.size(),((H5O_iter_data)iter_data).iterdata.size()==2); - assertTrue("H5Ovisit_by_name "+(((H5O_iter_data)iter_data).iterdata.get(0)).link_name,(((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".")==0); - assertTrue("H5Ovisit_by_name "+(((H5O_iter_data)iter_data).iterdata.get(1)).link_name,(((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS2")==0); + assertFalse("H5Ovisit_by_name ", ((H5O_iter_data)iter_data).iterdata.isEmpty()); + assertTrue("H5Ovisit_by_name " + ((H5O_iter_data)iter_data).iterdata.size(), + ((H5O_iter_data)iter_data).iterdata.size() == 2); + assertTrue("H5Ovisit_by_name " + (((H5O_iter_data)iter_data).iterdata.get(0)).link_name, + (((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".") == 0); + assertTrue("H5Ovisit_by_name " + (((H5O_iter_data)iter_data).iterdata.get(1)).link_name, + (((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS2") == 0); } @Test - public void testH5Oexists_by_name() { + public void testH5Oexists_by_name() + { boolean name_exists = false; try { name_exists = H5.H5Oexists_by_name(H5fid, "G1", HDF5Constants.H5P_DEFAULT); @@ -624,16 +748,17 @@ public class TestH5Obasic { fail("H5.H5Oexists_by_name: " + err); } assertTrue("H5Oexists_by_name ", name_exists); - //TODO get dangling link result + // TODO get dangling link result } @Test - public void testH5Oopen_by_token() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oopen_by_token() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_info_t obj_info = null; try { try { - oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { @@ -641,7 +766,11 @@ public class TestH5Obasic { fail("testH5Oopen_by_token: H5.H5Oget_info: " + err); } H5la_ds1 = obj_info.token; - try {H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } try { oid = H5.H5Oopen_by_token(H5fid, H5la_ds1); } @@ -656,22 +785,28 @@ public class TestH5Obasic { err.printStackTrace(); fail("testH5Oopen_by_token: H5.H5Oget_info: " + err); } - assertFalse("testH5Oopen_by_token: H5Oget_info ",obj_info==null); - assertTrue("testH5Oopen_by_token: H5Oget_info link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); + assertFalse("testH5Oopen_by_token: H5Oget_info ", obj_info == null); + assertTrue("testH5Oopen_by_token: H5Oget_info link type", + obj_info.type == HDF5Constants.H5O_TYPE_DATASET); assertTrue("testH5Oopen_by_token: Link Object Token", obj_info.token.equals(H5la_ds1)); } finally { - try{H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } } @Test - public void testH5Oopen_by_idx_n0() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oopen_by_idx_n0() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_info_t obj_info = null; try { try { - oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { @@ -679,9 +814,14 @@ public class TestH5Obasic { fail("testH5Oopen_by_idx_n0: H5.H5Oget_info: " + err); } H5la_ds1 = obj_info.token; - try {H5.H5Oclose(oid);} catch (Exception ex) {} try { - oid = H5.H5Oopen_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + H5.H5Oclose(oid); + } + catch (Exception ex) { + } + try { + oid = H5.H5Oopen_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -694,22 +834,28 @@ public class TestH5Obasic { err.printStackTrace(); fail("testH5Oopen_by_idx_n0: H5.H5Oget_info_by_idx: " + err); } - assertFalse("testH5Oopen_by_idx_n0: H5Oget_info_by_idx ",obj_info==null); - assertTrue("testH5Oopen_by_idx_n0: H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); + assertFalse("testH5Oopen_by_idx_n0: H5Oget_info_by_idx ", obj_info == null); + assertTrue("testH5Oopen_by_idx_n0: H5Oget_info_by_idx link type", + obj_info.type == HDF5Constants.H5O_TYPE_DATASET); assertTrue("testH5Oopen_by_idx_n0: Link Object Token", obj_info.token.equals(H5la_ds1)); } finally { - try{H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } } @Test - public void testH5Oopen_by_idx_n3() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oopen_by_idx_n3() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_info_t obj_info = null; try { try { - oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { @@ -717,9 +863,14 @@ public class TestH5Obasic { fail("testH5Oopen_by_idx_n3:H5.H5Oget_info: " + err); } H5la_l1 = obj_info.token; - try {H5.H5Oclose(oid);} catch (Exception ex) {} try { - oid = H5.H5Oopen_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); + H5.H5Oclose(oid); + } + catch (Exception ex) { + } + try { + oid = H5.H5Oopen_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -732,12 +883,17 @@ public class TestH5Obasic { err.printStackTrace(); fail("testH5Oopen_by_idx_n3:H5.H5Oget_info_by_idx: " + err); } - assertFalse("testH5Oopen_by_idx_n3:H5Oget_info_by_idx ",obj_info==null); - assertTrue("testH5Oopen_by_idx_n3:H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); + assertFalse("testH5Oopen_by_idx_n3:H5Oget_info_by_idx ", obj_info == null); + assertTrue("testH5Oopen_by_idx_n3:H5Oget_info_by_idx link type", + obj_info.type == HDF5Constants.H5O_TYPE_DATASET); assertTrue("testH5Oopen_by_idx_n3:Link Object Token", obj_info.token.equals(H5la_l1)); } finally { - try{H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } } } diff --git a/java/test/TestH5Ocopy.java b/java/test/TestH5Ocopy.java index 821cad3..e429fef 100644 --- a/java/test/TestH5Ocopy.java +++ b/java/test/TestH5Ocopy.java @@ -31,20 +31,22 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Ocopy { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String FILENAME = "testRefsattribute.h5"; - private static final int DIM_X = 4; - private static final int DIM_Y = 6; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did1 = HDF5Constants.H5I_INVALID_HID; - long H5did2 = HDF5Constants.H5I_INVALID_HID; - long H5gcpl = HDF5Constants.H5I_INVALID_HID; - long H5gid = HDF5Constants.H5I_INVALID_HID; - long H5dsid2 = HDF5Constants.H5I_INVALID_HID; - long[] dims = { 2 }; - - private final void _deleteFile(String filename) { + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did1 = HDF5Constants.H5I_INVALID_HID; + long H5did2 = HDF5Constants.H5I_INVALID_HID; + long H5gcpl = HDF5Constants.H5I_INVALID_HID; + long H5gid = HDF5Constants.H5I_INVALID_HID; + long H5dsid2 = HDF5Constants.H5I_INVALID_HID; + long[] dims = {2}; + + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { @@ -57,87 +59,113 @@ public class TestH5Ocopy { } } - private final long _createDataset(long fid, long dsid, String name, long dapl) { + private final long _createDataset(long fid, long dsid, String name, long dapl) + { long did = HDF5Constants.H5I_INVALID_HID; try { - did = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Dcreate: " + err); } - assertTrue("TestH5O._createDataset: ",did >= 0); + assertTrue("TestH5O._createDataset: ", did >= 0); return did; } - private final long _createGroup(long fid, String name) { + private final long _createGroup(long fid, String name) + { long gid = HDF5Constants.H5I_INVALID_HID; try { H5gcpl = HDF5Constants.H5P_DEFAULT; - gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, - H5gcpl, HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, H5gcpl, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Gcreate: " + err); } - assertTrue("TestH5O._createGroup: ",gid >= 0); + assertTrue("TestH5O._createGroup: ", gid >= 0); return gid; } @Before - public void createH5file() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { - H5fid = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - H5dsid2 = H5.H5Screate(HDF5Constants.H5S_SCALAR); - H5did1 = _createDataset(H5fid, H5dsid2, "DS2", HDF5Constants.H5P_DEFAULT); - H5dsid = H5.H5Screate_simple(1, dims, null); - H5gid = _createGroup(H5fid, "/G1"); - H5did2 = _createDataset(H5gid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + H5dsid2 = H5.H5Screate(HDF5Constants.H5S_SCALAR); + H5did1 = _createDataset(H5fid, H5dsid2, "DS2", HDF5Constants.H5P_DEFAULT); + H5dsid = H5.H5Screate_simple(1, dims, null); + H5gid = _createGroup(H5fid, "/G1"); + H5did2 = _createDataset(H5gid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5O.createH5file: " + err); } - assertTrue("TestH5O.createH5file: H5.H5Fcreate: ",H5fid >= 0); - assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ",H5dsid >= 0); - assertTrue("TestH5O.createH5file: H5.H5Gcreate: ",H5gid >= 0); + assertTrue("TestH5O.createH5file: H5.H5Fcreate: ", H5fid >= 0); + assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ", H5dsid >= 0); + assertTrue("TestH5O.createH5file: H5.H5Gcreate: ", H5gid >= 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5gid > 0) - try {H5.H5Gclose(H5gid);} catch (Exception ex) {} + try { + H5.H5Gclose(H5gid); + } + catch (Exception ex) { + } if (H5did2 > 0) - try {H5.H5Dclose(H5did2);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did2); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5dsid2 > 0) - try {H5.H5Sclose(H5dsid2);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid2); + } + catch (Exception ex) { + } if (H5did1 > 0) - try {H5.H5Dclose(H5did1);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did1); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } _deleteFile(FILENAME); System.out.println(); } @Test - public void testH5OcopyRefsAttr() { - long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; + public void testH5OcopyRefsAttr() + { + long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; byte[][] dset_data = new byte[2][HDF5Constants.H5R_REF_BUF_SIZE]; - long attribute_id = HDF5Constants.H5I_INVALID_HID; + long attribute_id = HDF5Constants.H5I_INVALID_HID; try { try { @@ -147,7 +175,7 @@ public class TestH5Ocopy { err.printStackTrace(); fail("testH5OcopyRefsAttr: H5Rcreate_object " + err); } - + try { dset_data[1] = H5.H5Rcreate_object(H5fid, "DS2", HDF5Constants.H5P_DEFAULT); } @@ -155,27 +183,40 @@ public class TestH5Ocopy { err.printStackTrace(); fail("testH5OcopyRefsAttr: H5Rcreate_object " + err); } - + try { - attribute_id = H5.H5Acreate(H5did2, "A1", HDF5Constants.H5T_STD_REF, H5dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + attribute_id = H5.H5Acreate(H5did2, "A1", HDF5Constants.H5T_STD_REF, H5dsid, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); assertTrue("testH5OcopyRefsAttr.H5Acreate: ", attribute_id >= 0); H5.H5Awrite(attribute_id, HDF5Constants.H5T_STD_REF, dset_data); - + H5.H5Aclose(attribute_id); } catch (Exception ex) { fail("testH5OcopyRefsAttr: H5Awrite failed"); } finally { - try {H5.H5Aclose(attribute_id);} catch (Exception exx) {} + try { + H5.H5Aclose(attribute_id); + } + catch (Exception exx) { + } } } catch (Exception ex) { ex.printStackTrace(); } finally { - try {H5.H5Rdestroy(dset_data[1]);} catch (Exception ex) {} - try {H5.H5Rdestroy(dset_data[0]);} catch (Exception ex) {} + try { + H5.H5Rdestroy(dset_data[1]); + } + catch (Exception ex) { + } + try { + H5.H5Rdestroy(dset_data[0]); + } + catch (Exception ex) { + } } try { @@ -185,19 +226,24 @@ public class TestH5Ocopy { H5.H5Ocopy(H5fid, ".", H5fid, "CPYREF", ocp_plist_id, HDF5Constants.H5P_DEFAULT); } catch (Exception ex) { - fail("testH5OcopyRefsAttr: H5Ocopy failed"); + fail("testH5OcopyRefsAttr: H5Ocopy failed"); } finally { - try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {} + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception ex) { + } } } @Test - public void testH5OcopyRefsDatasettodiffFile() { + public void testH5OcopyRefsDatasettodiffFile() + { byte[][] dset_data = new byte[2][HDF5Constants.H5R_REF_BUF_SIZE]; - long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; - long dataset_id = HDF5Constants.H5I_INVALID_HID; - long H5fid2 = HDF5Constants.H5I_INVALID_HID; + long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; + long dataset_id = HDF5Constants.H5I_INVALID_HID; + long H5fid2 = HDF5Constants.H5I_INVALID_HID; try { try { @@ -214,72 +260,96 @@ public class TestH5Ocopy { err.printStackTrace(); fail("testH5OcopyRefsDatasettodiffFile: H5Rcreate_object " + err); } - + try { - dataset_id = H5.H5Dcreate(H5fid, "DSREF", - HDF5Constants.H5T_STD_REF, H5dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + dataset_id = + H5.H5Dcreate(H5fid, "DSREF", HDF5Constants.H5T_STD_REF, H5dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); assertTrue("testH5OcopyRefsDatasettodiffFile.H5Dcreate: ", dataset_id >= 0); - H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, + HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data); H5.H5Dclose(dataset_id); } catch (Exception ex) { fail("testH5OcopyRefsDatasettodiffFile: create dataset failed"); } finally { - try {H5.H5Dclose(dataset_id);} catch (Exception exx) {} + try { + H5.H5Dclose(dataset_id); + } + catch (Exception exx) { + } } } catch (Exception ex) { ex.printStackTrace(); } finally { - try {H5.H5Rdestroy(dset_data[0]);} catch (Exception ex) {} - try {H5.H5Rdestroy(dset_data[1]);} catch (Exception ex) {} + try { + H5.H5Rdestroy(dset_data[0]); + } + catch (Exception ex) { + } + try { + H5.H5Rdestroy(dset_data[1]); + } + catch (Exception ex) { + } } try { - //create new file - H5fid2 = H5.H5Fcreate("copy.h5", HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + // create new file + H5fid2 = H5.H5Fcreate("copy.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); assertTrue("testH5OcopyRefsDatasettodiffFile.H5Fcreate: ", H5fid2 >= 0); H5.H5Fflush(H5fid2, HDF5Constants.H5F_SCOPE_LOCAL); } catch (Exception ex) { - try {H5.H5Fclose(H5fid2);} catch (Exception exx) {} + try { + H5.H5Fclose(H5fid2); + } + catch (Exception exx) { + } fail("testH5OcopyRefsDatasettodiffFile: H5Fcreate failed"); } try { - //create object copy property list id and set the flags. + // create object copy property list id and set the flags. ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); assertTrue("testH5OcopyRefsDatasettodiffFile.H5Pcreate: ", ocp_plist_id >= 0); H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); - //Perform copy function. + // Perform copy function. H5.H5Ocopy(H5fid, ".", H5fid2, "CPYREFD", ocp_plist_id, HDF5Constants.H5P_DEFAULT); } - catch (Exception ex){ + catch (Exception ex) { ex.printStackTrace(); fail("testH5OcopyRefsDatasettodiffFile: H5Ocopy failed"); } finally { - try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {} - try {H5.H5Fclose(H5fid2);} catch (Exception ex) {} + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception ex) { + } + try { + H5.H5Fclose(H5fid2); + } + catch (Exception ex) { + } } _deleteFile("copy.h5"); } @Test - public void testH5OcopyRefsDatasettosameFile() { + public void testH5OcopyRefsDatasettosameFile() + { byte[][] dset_data = new byte[2][HDF5Constants.H5R_REF_BUF_SIZE]; byte[][] read_data = new byte[2][HDF5Constants.H5R_REF_BUF_SIZE]; - long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; - long dataset_id = HDF5Constants.H5I_INVALID_HID; - long did = HDF5Constants.H5I_INVALID_HID; - int obj_type = -1; + long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; + long dataset_id = HDF5Constants.H5I_INVALID_HID; + long did = HDF5Constants.H5I_INVALID_HID; + int obj_type = -1; try { try { @@ -289,7 +359,7 @@ public class TestH5Ocopy { err.printStackTrace(); fail("testH5OcopyRefsDatasettosameFile: H5Rcreate_object " + err); } - + try { dset_data[1] = H5.H5Rcreate_object(H5fid, "DS2", HDF5Constants.H5P_DEFAULT); } @@ -297,43 +367,54 @@ public class TestH5Ocopy { err.printStackTrace(); fail("testH5OcopyRefsDatasettosameFile: H5Rcreate_object " + err); } - + try { - //Create a dataset and write object references to it. - dataset_id = H5.H5Dcreate(H5fid, "DSREF", - HDF5Constants.H5T_STD_REF, H5dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + // Create a dataset and write object references to it. + dataset_id = + H5.H5Dcreate(H5fid, "DSREF", HDF5Constants.H5T_STD_REF, H5dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); assertTrue("testH5OcopyRefsDatasettosameFile.H5Dcreate: ", dataset_id >= 0); - H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); - //Close the dataset. + H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, + HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data); + // Close the dataset. H5.H5Dclose(dataset_id); } catch (Exception ex) { fail("testH5OcopyRefsDatasettosameFile: create dataset failed"); } finally { - try {H5.H5Dclose(dataset_id);} catch (Exception exx) {} + try { + H5.H5Dclose(dataset_id); + } + catch (Exception exx) { + } } } catch (Exception ex) { ex.printStackTrace(); } finally { - try {H5.H5Rdestroy(dset_data[1]);} catch (Exception ex) {} - try {H5.H5Rdestroy(dset_data[0]);} catch (Exception ex) {} + try { + H5.H5Rdestroy(dset_data[1]); + } + catch (Exception ex) { + } + try { + H5.H5Rdestroy(dset_data[0]); + } + catch (Exception ex) { + } } try { ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); assertTrue("testH5OcopyRefsDatasettosameFile.H5Pcreate: ", ocp_plist_id >= 0); H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); - //Perform copy function. + // Perform copy function. try { H5.H5Ocopy(H5fid, "DSREF", H5fid, "CPYREFD", ocp_plist_id, HDF5Constants.H5P_DEFAULT); } - catch(Exception ex) { + catch (Exception ex) { fail("testH5OcopyRefsDatasettosameFile: H5Ocopy failed"); } } @@ -341,11 +422,15 @@ public class TestH5Ocopy { fail("testH5OcopyRefsDatasettosameFile: H5Pset_copy_object failed"); } finally { - try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {} + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception exx) { + } } try { - //Open the dataset that has been copied + // Open the dataset that has been copied try { did = H5.H5Dopen(H5fid, "DSREF", HDF5Constants.H5P_DEFAULT); assertTrue("testH5OcopyRefsDatasettosameFile.H5Dopen: ", did >= 0); @@ -355,9 +440,10 @@ public class TestH5Ocopy { fail("testH5OcopyRefsDatasettosameFile: H5Dopen failed"); } - //Read the dataset object references in the read_data buffer. + // Read the dataset object references in the read_data buffer. try { - H5.H5Dread(did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL,HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, read_data); + H5.H5Dread(did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, read_data); } catch (Exception e) { e.printStackTrace(); @@ -369,14 +455,18 @@ public class TestH5Ocopy { fail("testH5OcopyRefsDatasettosameFile: open and read dataset failed"); } finally { - try {H5.H5Dclose(did);} catch (Exception ex) {} + try { + H5.H5Dclose(did); + } + catch (Exception ex) { + } } try { - //Get the type of object the reference points to. + // Get the type of object the reference points to. obj_type = H5.H5Rget_obj_type3(read_data[1], HDF5Constants.H5R_OBJECT); assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET); - + obj_type = H5.H5Rget_obj_type3(read_data[0], HDF5Constants.H5R_OBJECT); assertEquals(obj_type, HDF5Constants.H5O_TYPE_GROUP); } @@ -384,22 +474,32 @@ public class TestH5Ocopy { ex.printStackTrace(); } finally { - try {H5.H5Rdestroy(read_data[1]);} catch (Exception ex) {} - try {H5.H5Rdestroy(read_data[0]);} catch (Exception ex) {} + try { + H5.H5Rdestroy(read_data[1]); + } + catch (Exception ex) { + } + try { + H5.H5Rdestroy(read_data[0]); + } + catch (Exception ex) { + } } } - + @Test - public void testH5OcopyNullRef() throws Throwable { + public void testH5OcopyNullRef() throws Throwable + { final long _pid_ = HDF5Constants.H5P_DEFAULT; - long sid = HDF5Constants.H5I_INVALID_HID; - long did = HDF5Constants.H5I_INVALID_HID; - long aid = HDF5Constants.H5I_INVALID_HID; + long sid = HDF5Constants.H5I_INVALID_HID; + long did = HDF5Constants.H5I_INVALID_HID; + long aid = HDF5Constants.H5I_INVALID_HID; try { sid = H5.H5Screate_simple(1, new long[] {1}, null); assertTrue("testH5OcopyNullRef.H5Screate_simple: ", sid >= 0); - did = H5.H5Dcreate(H5fid, "Dataset_with_null_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_, _pid_, _pid_); + did = H5.H5Dcreate(H5fid, "Dataset_with_null_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_, + _pid_, _pid_); assertTrue("testH5OcopyNullRef.H5Dcreate: ", did > 0); aid = H5.H5Acreate(did, "Null_Ref", HDF5Constants.H5T_STD_REF, sid, _pid_, _pid_); assertTrue("testH5OcopyNullRef.H5Acreate: ", aid > 0); @@ -408,20 +508,36 @@ public class TestH5Ocopy { ex.printStackTrace(); } finally { - try {H5.H5Dclose(did);} catch (Exception exx) {} - try {H5.H5Aclose(aid);} catch (Exception exx) {} - try {H5.H5Sclose(sid);} catch (Exception exx) {} + try { + H5.H5Dclose(did); + } + catch (Exception exx) { + } + try { + H5.H5Aclose(aid); + } + catch (Exception exx) { + } + try { + H5.H5Sclose(sid); + } + catch (Exception exx) { + } } long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); assertTrue("testH5OcopyNullRef.H5Pcreate: ", ocp_plist_id >= 0); H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); try { - H5.H5Ocopy(H5fid, "/Dataset_with_null_Ref", H5fid, "/Dataset_with_null_Ref_cp", ocp_plist_id, _pid_); + H5.H5Ocopy(H5fid, "/Dataset_with_null_Ref", H5fid, "/Dataset_with_null_Ref_cp", ocp_plist_id, + _pid_); } finally { - try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {} + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception exx) { + } } } - } diff --git a/java/test/TestH5OcopyOld.java b/java/test/TestH5OcopyOld.java index e547051..2cfccc7 100644 --- a/java/test/TestH5OcopyOld.java +++ b/java/test/TestH5OcopyOld.java @@ -31,20 +31,22 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5OcopyOld { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String FILENAME = "testRefsattributeO.h5"; - private static final int DIM_X = 4; - private static final int DIM_Y = 6; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did1 = HDF5Constants.H5I_INVALID_HID; - long H5did2 = HDF5Constants.H5I_INVALID_HID; - long H5gcpl = HDF5Constants.H5I_INVALID_HID; - long H5gid = HDF5Constants.H5I_INVALID_HID; - long H5dsid2 = HDF5Constants.H5I_INVALID_HID; - long[] dims = { 2 }; - - private final void _deleteFile(String filename) { + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did1 = HDF5Constants.H5I_INVALID_HID; + long H5did2 = HDF5Constants.H5I_INVALID_HID; + long H5gcpl = HDF5Constants.H5I_INVALID_HID; + long H5gid = HDF5Constants.H5I_INVALID_HID; + long H5dsid2 = HDF5Constants.H5I_INVALID_HID; + long[] dims = {2}; + + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { @@ -57,93 +59,119 @@ public class TestH5OcopyOld { } } - private final long _createDataset(long fid, long dsid, String name, long dapl) { + private final long _createDataset(long fid, long dsid, String name, long dapl) + { long did = HDF5Constants.H5I_INVALID_HID; try { - did = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Dcreate: " + err); } - assertTrue("TestH5O._createDataset: ",did >= 0); + assertTrue("TestH5O._createDataset: ", did >= 0); return did; } - private final long _createGroup(long fid, String name) { + private final long _createGroup(long fid, String name) + { long gid = HDF5Constants.H5I_INVALID_HID; try { H5gcpl = HDF5Constants.H5P_DEFAULT; - gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, - H5gcpl, HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, H5gcpl, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Gcreate: " + err); } - assertTrue("TestH5O._createGroup: ",gid >= 0); + assertTrue("TestH5O._createGroup: ", gid >= 0); return gid; } @Before - public void createH5file() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { - H5fid = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - H5dsid2 = H5.H5Screate(HDF5Constants.H5S_SCALAR); - H5did1 = _createDataset(H5fid, H5dsid2, "DS2", HDF5Constants.H5P_DEFAULT); - H5dsid = H5.H5Screate_simple(1, dims, null); - H5gid = _createGroup(H5fid, "/G1"); - H5did2 = _createDataset(H5gid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + H5dsid2 = H5.H5Screate(HDF5Constants.H5S_SCALAR); + H5did1 = _createDataset(H5fid, H5dsid2, "DS2", HDF5Constants.H5P_DEFAULT); + H5dsid = H5.H5Screate_simple(1, dims, null); + H5gid = _createGroup(H5fid, "/G1"); + H5did2 = _createDataset(H5gid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5O.createH5file: " + err); } - assertTrue("TestH5O.createH5file: H5.H5Fcreate: ",H5fid >= 0); - assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ",H5dsid >= 0); - assertTrue("TestH5O.createH5file: H5.H5Gcreate: ",H5gid >= 0); + assertTrue("TestH5O.createH5file: H5.H5Fcreate: ", H5fid >= 0); + assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ", H5dsid >= 0); + assertTrue("TestH5O.createH5file: H5.H5Gcreate: ", H5gid >= 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5gid > 0) - try {H5.H5Gclose(H5gid);} catch (Exception ex) {} + try { + H5.H5Gclose(H5gid); + } + catch (Exception ex) { + } if (H5did2 > 0) - try {H5.H5Dclose(H5did2);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did2); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5dsid2 > 0) - try {H5.H5Sclose(H5dsid2);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid2); + } + catch (Exception ex) { + } if (H5did1 > 0) - try {H5.H5Dclose(H5did1);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did1); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } _deleteFile(FILENAME); System.out.println(); } @Test - public void testH5OcopyRefsAttr() { + public void testH5OcopyRefsAttr() + { long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; - byte rbuf0[]=null , rbuf1[] = null; - byte[] dset_data = new byte[16]; + byte rbuf0[] = null, rbuf1[] = null; + byte[] dset_data = new byte[16]; long attribute_id = HDF5Constants.H5I_INVALID_HID; try { rbuf0 = H5.H5Rcreate(H5fid, "/G1", HDF5Constants.H5R_OBJECT, -1); rbuf1 = H5.H5Rcreate(H5fid, "DS2", HDF5Constants.H5R_OBJECT, -1); - //System.arraycopy(rbuf0, 0, dset_data, 0, 8); + // System.arraycopy(rbuf0, 0, dset_data, 0, 8); System.arraycopy(rbuf1, 0, dset_data, 8, 8); } catch (Exception ex) { @@ -151,7 +179,8 @@ public class TestH5OcopyOld { } try { - attribute_id = H5.H5Acreate(H5did2, "A1", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + attribute_id = H5.H5Acreate(H5did2, "A1", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); assertTrue("testH5OcopyRefsAttr.H5Acreate: ", attribute_id >= 0); H5.H5Awrite(attribute_id, HDF5Constants.H5T_STD_REF_OBJ, dset_data); @@ -161,7 +190,11 @@ public class TestH5OcopyOld { fail("testH5OcopyRefsAttr: H5Awrite failed"); } finally { - try {H5.H5Aclose(attribute_id);} catch (Exception exx) {} + try { + H5.H5Aclose(attribute_id); + } + catch (Exception exx) { + } } try { @@ -171,82 +204,103 @@ public class TestH5OcopyOld { H5.H5Ocopy(H5fid, ".", H5fid, "CPYREF", ocp_plist_id, HDF5Constants.H5P_DEFAULT); } catch (Exception ex) { - fail("testH5OcopyRefsAttr: H5Ocopy failed"); + fail("testH5OcopyRefsAttr: H5Ocopy failed"); } finally { - try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {} + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception ex) { + } } } @Test - public void testH5OcopyRefsDatasettodiffFile() { - byte rbuf1[] = null; - byte[] dset_data = new byte[16]; + public void testH5OcopyRefsDatasettodiffFile() + { + byte rbuf1[] = null; + byte[] dset_data = new byte[16]; long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; - long dataset_id = HDF5Constants.H5I_INVALID_HID; - long H5fid2 = HDF5Constants.H5I_INVALID_HID; + long dataset_id = HDF5Constants.H5I_INVALID_HID; + long H5fid2 = HDF5Constants.H5I_INVALID_HID; try { rbuf1 = H5.H5Rcreate(H5fid, "DS2", HDF5Constants.H5R_OBJECT, -1); System.arraycopy(rbuf1, 0, dset_data, 8, 8); - dataset_id = H5.H5Dcreate(H5fid, "DSREF", - HDF5Constants.H5T_STD_REF_OBJ, H5dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + dataset_id = + H5.H5Dcreate(H5fid, "DSREF", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); assertTrue("testH5OcopyRefsDatasettodiffFile.H5Dcreate: ", dataset_id >= 0); - H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); + H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL, + HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data); H5.H5Dclose(dataset_id); } catch (Exception ex) { fail("testH5OcopyRefsDatasettodiffFile: create dataset failed"); } finally { - try {H5.H5Dclose(dataset_id);} catch (Exception exx) {} + try { + H5.H5Dclose(dataset_id); + } + catch (Exception exx) { + } } try { - //create new file - H5fid2 = H5.H5Fcreate("copy.h5", HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + // create new file + H5fid2 = H5.H5Fcreate("copy.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); assertTrue("testH5OcopyRefsDatasettodiffFile.H5Fcreate: ", H5fid2 >= 0); H5.H5Fflush(H5fid2, HDF5Constants.H5F_SCOPE_LOCAL); } catch (Exception ex) { - try {H5.H5Fclose(H5fid2);} catch (Exception exx) {} + try { + H5.H5Fclose(H5fid2); + } + catch (Exception exx) { + } fail("testH5OcopyRefsDatasettodiffFile: H5Fcreate failed"); } try { - //create object copy property list id and set the flags. + // create object copy property list id and set the flags. ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); assertTrue("testH5OcopyRefsDatasettodiffFile.H5Pcreate: ", ocp_plist_id >= 0); H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); - //Perform copy function. + // Perform copy function. H5.H5Ocopy(H5fid, ".", H5fid2, "CPYREFD", ocp_plist_id, HDF5Constants.H5P_DEFAULT); } - catch (Exception ex){ + catch (Exception ex) { ex.printStackTrace(); fail("testH5OcopyRefsDatasettodiffFile: H5Ocopy failed"); } finally { - try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {} - try {H5.H5Fclose(H5fid2);} catch (Exception ex) {} + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception ex) { + } + try { + H5.H5Fclose(H5fid2); + } + catch (Exception ex) { + } } _deleteFile("copy.h5"); } @Test - public void testH5OcopyRefsDatasettosameFile() { - byte rbuf0[]=null , rbuf1[] = null; - byte[] dset_data = new byte[16]; + public void testH5OcopyRefsDatasettosameFile() + { + byte rbuf0[] = null, rbuf1[] = null; + byte[] dset_data = new byte[16]; long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; - long dataset_id = HDF5Constants.H5I_INVALID_HID; - long did = HDF5Constants.H5I_INVALID_HID; - int obj_type = -1; - byte[] read_data = new byte[16]; + long dataset_id = HDF5Constants.H5I_INVALID_HID; + long did = HDF5Constants.H5I_INVALID_HID; + int obj_type = -1; + byte[] read_data = new byte[16]; try { rbuf0 = H5.H5Rcreate(H5fid, "/G1", HDF5Constants.H5R_OBJECT, -1); @@ -254,19 +308,22 @@ public class TestH5OcopyOld { System.arraycopy(rbuf0, 0, dset_data, 0, 8); System.arraycopy(rbuf1, 0, dset_data, 8, 8); - //Create a dataset and write object references to it. - dataset_id = H5.H5Dcreate(H5fid, "DSREF", - HDF5Constants.H5T_STD_REF_OBJ, H5dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + // Create a dataset and write object references to it. + dataset_id = + H5.H5Dcreate(H5fid, "DSREF", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); assertTrue("testH5OcopyRefsDatasettosameFile.H5Dcreate: ", dataset_id >= 0); - H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); - //Close the dataset. + H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL, + HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data); + // Close the dataset. H5.H5Dclose(dataset_id); } catch (Exception ex) { - try {H5.H5Dclose(dataset_id);} catch (Exception exx) {} + try { + H5.H5Dclose(dataset_id); + } + catch (Exception exx) { + } fail("testH5OcopyRefsDatasettosameFile: create dataset failed"); } @@ -276,37 +333,50 @@ public class TestH5OcopyOld { H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); } catch (Exception ex) { - try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {} + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception exx) { + } fail("testH5OcopyRefsDatasettosameFile: H5Pset_copy_object failed"); } - //Perform copy function. + // Perform copy function. try { H5.H5Ocopy(H5fid, "DSREF", H5fid, "CPYREFD", ocp_plist_id, HDF5Constants.H5P_DEFAULT); } - catch(Exception ex) { - try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {} + catch (Exception ex) { + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception exx) { + } fail("testH5OcopyRefsDatasettosameFile: H5Ocopy failed"); } - //Open the dataset that has been copied + // Open the dataset that has been copied try { did = H5.H5Dopen(H5fid, "DSREF", HDF5Constants.H5P_DEFAULT); assertTrue("testH5OcopyRefsDatasettosameFile.H5Dopen: ", did >= 0); } catch (Exception e) { - try {H5.H5Dclose(did);} catch (Exception exx) {} + try { + H5.H5Dclose(did); + } + catch (Exception exx) { + } e.printStackTrace(); fail("testH5OcopyRefsDatasettosameFile: H5Dopen failed"); } try { - //Read the dataset object references in the read_data buffer. - H5.H5Dread(did, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL,HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, read_data); + // Read the dataset object references in the read_data buffer. + H5.H5Dread(did, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, read_data); System.arraycopy(read_data, 0, rbuf0, 0, 8); System.arraycopy(read_data, 8, rbuf1, 0, 8); - //Get the type of object the reference points to. + // Get the type of object the reference points to. obj_type = H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_OBJECT, rbuf1); assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET); @@ -317,22 +387,32 @@ public class TestH5OcopyOld { ex.printStackTrace(); } finally { - try {H5.H5Dclose(did);} catch (Exception ex) {} - try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {} + try { + H5.H5Dclose(did); + } + catch (Exception ex) { + } + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception ex) { + } } - } - + } + @Test - public void testH5OcopyNullRef() throws Throwable { + public void testH5OcopyNullRef() throws Throwable + { final long _pid_ = HDF5Constants.H5P_DEFAULT; - long sid = HDF5Constants.H5I_INVALID_HID; - long did = HDF5Constants.H5I_INVALID_HID; - long aid = HDF5Constants.H5I_INVALID_HID; + long sid = HDF5Constants.H5I_INVALID_HID; + long did = HDF5Constants.H5I_INVALID_HID; + long aid = HDF5Constants.H5I_INVALID_HID; try { sid = H5.H5Screate_simple(1, new long[] {1}, null); assertTrue("testH5OcopyNullRef.H5Screate_simple: ", sid >= 0); - did = H5.H5Dcreate(H5fid, "Dataset_with_null_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_, _pid_, _pid_); + did = H5.H5Dcreate(H5fid, "Dataset_with_null_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_, + _pid_, _pid_); assertTrue("testH5OcopyNullRef.H5Dcreate: ", did > 0); aid = H5.H5Acreate(did, "Null_Ref", HDF5Constants.H5T_STD_REF_OBJ, sid, _pid_, _pid_); assertTrue("testH5OcopyNullRef.H5Acreate: ", aid > 0); @@ -341,57 +421,74 @@ public class TestH5OcopyOld { ex.printStackTrace(); } finally { - try {H5.H5Dclose(did);} catch (Exception exx) {} - try {H5.H5Aclose(aid);} catch (Exception exx) {} - try {H5.H5Sclose(sid);} catch (Exception exx) {} + try { + H5.H5Dclose(did); + } + catch (Exception exx) { + } + try { + H5.H5Aclose(aid); + } + catch (Exception exx) { + } + try { + H5.H5Sclose(sid); + } + catch (Exception exx) { + } } long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); assertTrue("testH5OcopyNullRef.H5Pcreate: ", ocp_plist_id >= 0); H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); try { - H5.H5Ocopy(H5fid, "/Dataset_with_null_Ref", H5fid, "/Dataset_with_null_Ref_cp", ocp_plist_id, _pid_); + H5.H5Ocopy(H5fid, "/Dataset_with_null_Ref", H5fid, "/Dataset_with_null_Ref_cp", ocp_plist_id, + _pid_); } finally { - try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {} + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception exx) { + } } } -// @Ignore because of JIRA HDF5-9547 -// @Test(expected = HDF5LibraryException.class) -// public void testH5OcopyInvalidRef() throws Throwable { -// final long _pid_ = HDF5Constants.H5P_DEFAULT; -// long sid = HDF5Constants.H5I_INVALID_HID; -// long did = HDF5Constants.H5I_INVALID_HID; -// long aid = HDF5Constants.H5I_INVALID_HID; -// -// try { -// sid = H5.H5Screate_simple(1, new long[] {1}, null); -// assertTrue("testH5OcopyInvalidRef.H5Screate_simple: ", sid >= 0); -// did = H5.H5Dcreate(H5fid, "Dataset_with_invalid_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_, _pid_, _pid_); -// assertTrue("testH5OcopyInvalidRef.H5Dcreate: ", did > 0); -// aid = H5.H5Acreate(did, "Invalid_Ref", HDF5Constants.H5T_STD_REF_OBJ, sid, _pid_, _pid_); -// assertTrue("testH5OcopyInvalidRef.H5Acreate: ", aid > 0); -// H5.H5Awrite(aid, HDF5Constants.H5T_STD_REF_OBJ, new long[]{-1}); -// } -// catch (Exception ex) { -// ex.printStackTrace(); -// } -// finally { -// try {H5.H5Dclose(did);} catch (Exception exx) {} -// try {H5.H5Aclose(aid);} catch (Exception exx) {} -// try {H5.H5Sclose(sid);} catch (Exception exx) {} -// } -// -// long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); -// assertTrue("testH5OcopyInvalidRef.H5Pcreate: ", ocp_plist_id >= 0); -// H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); -// try { -// H5.H5Ocopy(H5fid, "/Dataset_with_invalid_Ref", H5fid, "/Dataset_with_invalid_Ref_cp", ocp_plist_id, _pid_); -// } -// finally { -// try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {} -// } -// } - + // @Ignore because of JIRA HDF5-9547 + // @Test(expected = HDF5LibraryException.class) + // public void testH5OcopyInvalidRef() throws Throwable { + // final long _pid_ = HDF5Constants.H5P_DEFAULT; + // long sid = HDF5Constants.H5I_INVALID_HID; + // long did = HDF5Constants.H5I_INVALID_HID; + // long aid = HDF5Constants.H5I_INVALID_HID; + // + // try { + // sid = H5.H5Screate_simple(1, new long[] {1}, null); + // assertTrue("testH5OcopyInvalidRef.H5Screate_simple: ", sid >= 0); + // did = H5.H5Dcreate(H5fid, "Dataset_with_invalid_Ref", HDF5Constants.H5T_NATIVE_INT, sid, + // _pid_, _pid_, _pid_); assertTrue("testH5OcopyInvalidRef.H5Dcreate: ", did > 0); aid = + // H5.H5Acreate(did, "Invalid_Ref", HDF5Constants.H5T_STD_REF_OBJ, sid, _pid_, _pid_); + // assertTrue("testH5OcopyInvalidRef.H5Acreate: ", aid > 0); + // H5.H5Awrite(aid, HDF5Constants.H5T_STD_REF_OBJ, new long[]{-1}); + // } + // catch (Exception ex) { + // ex.printStackTrace(); + // } + // finally { + // try {H5.H5Dclose(did);} catch (Exception exx) {} + // try {H5.H5Aclose(aid);} catch (Exception exx) {} + // try {H5.H5Sclose(sid);} catch (Exception exx) {} + // } + // + // long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); + // assertTrue("testH5OcopyInvalidRef.H5Pcreate: ", ocp_plist_id >= 0); + // H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); + // try { + // H5.H5Ocopy(H5fid, "/Dataset_with_invalid_Ref", H5fid, "/Dataset_with_invalid_Ref_cp", + // ocp_plist_id, _pid_); + // } + // finally { + // try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {} + // } + // } } diff --git a/java/test/TestH5Ocreate.java b/java/test/TestH5Ocreate.java index 78ea744..096abcd 100644 --- a/java/test/TestH5Ocreate.java +++ b/java/test/TestH5Ocreate.java @@ -21,8 +21,8 @@ import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.callbacks.H5O_iterate_t; import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t; +import hdf.hdf5lib.callbacks.H5O_iterate_t; import hdf.hdf5lib.exceptions.HDF5Exception; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5O_info_t; @@ -35,21 +35,23 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Ocreate { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_EXTFILE = "h5ex_g_iterateO2.hdf"; - private static final String H5_FILE = "testO.h5"; - private static final int DIM_X = 4; - private static final int DIM_Y = 6; - long H5fcpl = HDF5Constants.H5I_INVALID_HID; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did1 = HDF5Constants.H5I_INVALID_HID; - long H5did2 = HDF5Constants.H5I_INVALID_HID; - long H5gcpl = HDF5Constants.H5I_INVALID_HID; - long H5gid = HDF5Constants.H5I_INVALID_HID; - long[] H5dims = { DIM_X, DIM_Y }; - - private final void _deleteFile(String filename) { + private static final String H5_FILE = "testO.h5"; + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + long H5fcpl = HDF5Constants.H5I_INVALID_HID; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did1 = HDF5Constants.H5I_INVALID_HID; + long H5did2 = HDF5Constants.H5I_INVALID_HID; + long H5gcpl = HDF5Constants.H5I_INVALID_HID; + long H5gid = HDF5Constants.H5I_INVALID_HID; + long[] H5dims = {DIM_X, DIM_Y}; + + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { @@ -62,39 +64,41 @@ public class TestH5Ocreate { } } - private final long _createDataset(long fid, long dsid, String name, long dapl) { + private final long _createDataset(long fid, long dsid, String name, long dapl) + { long did = HDF5Constants.H5I_INVALID_HID; try { - did = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Dcreate: " + err); } - assertTrue("TestH5O._createDataset: ",did > 0); + assertTrue("TestH5O._createDataset: ", did > 0); return did; } - private final long _createGroup(long fid, String name) { + private final long _createGroup(long fid, String name) + { long gid = HDF5Constants.H5I_INVALID_HID; try { H5gcpl = HDF5Constants.H5P_DEFAULT; - gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, - H5gcpl, HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, H5gcpl, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Gcreate: " + err); } - assertTrue("TestH5O._createGroup: ",gid > 0); + assertTrue("TestH5O._createGroup: ", gid > 0); return gid; } - private final void _createHardLink(long fid, long cid, String curname, long did, String dstname, long lcpl, long lapl) { + private final void _createHardLink(long fid, long cid, String curname, long did, String dstname, + long lcpl, long lapl) + { boolean link_exists = false; try { H5.H5Lcreate_hard(cid, curname, did, dstname, lcpl, lapl); @@ -108,7 +112,9 @@ public class TestH5Ocreate { assertTrue("TestH5O._createHardLink ", link_exists); } - private final void _createSoftLink(long fid, String curname, long did, String dstname, long lcpl, long lapl) { + private final void _createSoftLink(long fid, String curname, long did, String dstname, long lcpl, + long lapl) + { boolean link_exists = false; try { H5.H5Lcreate_soft(curname, did, dstname, lcpl, lapl); @@ -122,7 +128,9 @@ public class TestH5Ocreate { assertTrue("TestH5O._createSoftLink ", link_exists); } - private final void _createExternalLink(long fid, String ext_filename, String curname, long did, String dstname, long lcpl, long lapl) { + private final void _createExternalLink(long fid, String ext_filename, String curname, long did, + String dstname, long lcpl, long lapl) + { boolean link_exists = false; try { H5.H5Lcreate_external(ext_filename, curname, did, dstname, lcpl, lapl); @@ -137,64 +145,95 @@ public class TestH5Ocreate { } @Before - public void createH5file() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { H5fcpl = H5.H5Pcreate(HDF5Constants.H5P_FILE_CREATE); - H5.H5Pset_link_creation_order(H5fcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED); - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - H5fcpl, HDF5Constants.H5P_DEFAULT); + H5.H5Pset_link_creation_order(H5fcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED + + HDF5Constants.H5P_CRT_ORDER_INDEXED); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, H5fcpl, HDF5Constants.H5P_DEFAULT); H5dsid = H5.H5Screate_simple(2, H5dims, null); H5did1 = _createDataset(H5fid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT); - H5gid = _createGroup(H5fid, "/G1"); + H5gid = _createGroup(H5fid, "/G1"); H5did2 = _createDataset(H5gid, H5dsid, "DS2", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5O.createH5file: " + err); } - assertTrue("TestH5O.createH5file: H5.H5Fcreate: ",H5fid > 0); - assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ",H5dsid > 0); - assertTrue("TestH5O.createH5file: H5.H5Gcreate: ",H5gid > 0); + assertTrue("TestH5O.createH5file: H5.H5Fcreate: ", H5fid > 0); + assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ", H5dsid > 0); + assertTrue("TestH5O.createH5file: H5.H5Gcreate: ", H5gid > 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5gid > 0) - try {H5.H5Gclose(H5gid);} catch (Exception ex) {} + try { + H5.H5Gclose(H5gid); + } + catch (Exception ex) { + } if (H5gcpl > 0) - try {H5.H5Pclose(H5gcpl);} catch (Exception ex) {} + try { + H5.H5Pclose(H5gcpl); + } + catch (Exception ex) { + } if (H5did2 > 0) - try {H5.H5Dclose(H5did2);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did2); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5did1 > 0) - try {H5.H5Dclose(H5did1);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did1); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } if (H5fcpl > 0) - try {H5.H5Pclose(H5fcpl);} catch (Exception ex) {} + try { + H5.H5Pclose(H5fcpl); + } + catch (Exception ex) { + } _deleteFile(H5_FILE); System.out.println(); } @Test(expected = HDF5LibraryException.class) - public void testH5Ocopy_cur_not_exists() throws Throwable { + public void testH5Ocopy_cur_not_exists() throws Throwable + { H5.H5Ocopy(H5fid, "None", H5fid, "DS1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Ocopy() { + public void testH5Ocopy() + { try { H5.H5Ocopy(H5fid, "DS1", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); boolean link_exists = H5.H5Lexists(H5fid, "CPY1", HDF5Constants.H5P_DEFAULT); - assertTrue("testH5Ocopy:H5Lexists ",link_exists); + assertTrue("testH5Ocopy:H5Lexists ", link_exists); } catch (Throwable err) { err.printStackTrace(); @@ -203,57 +242,66 @@ public class TestH5Ocreate { } @Test(expected = HDF5LibraryException.class) - public void testH5Ocopy_dst_link_exists() throws Throwable { - _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + public void testH5Ocopy_dst_link_exists() throws Throwable + { + _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Ocopy(H5fid, "CPY1", H5fid, "/G1/DS2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Oget_info_by_idx_n0_create() { + public void testH5Oget_info_by_idx_n0_create() + { H5O_info_t obj_info = null; try { int order = H5.H5Pget_link_creation_order(H5fcpl); - assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED); + assertTrue("creation order :" + order, + order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info_by_idx_n0:H5Pget_link_creation_order " + err); } try { - obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info_by_idx: " + err); } - assertFalse("H5Oget_info_by_idx ", obj_info==null); - assertTrue("H5Oget_info_by_idx link type", obj_info.type==HDF5Constants.H5O_TYPE_DATASET); + assertFalse("H5Oget_info_by_idx ", obj_info == null); + assertTrue("H5Oget_info_by_idx link type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET); } @Test - public void testH5Oget_info_by_idx_n1_create() { + public void testH5Oget_info_by_idx_n1_create() + { H5O_info_t obj_info = null; try { int order = H5.H5Pget_link_creation_order(H5fcpl); - assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED); + assertTrue("creation order :" + order, + order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info_by_idx_n1:H5Pget_link_creation_order " + err); } try { - obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 1, HDF5Constants.H5P_DEFAULT); + obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 1, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info_by_idx: " + err); } - assertFalse("H5Oget_info_by_idx ", obj_info==null); - assertTrue("H5Oget_info_by_idx link type", obj_info.type==HDF5Constants.H5O_TYPE_GROUP); + assertFalse("H5Oget_info_by_idx ", obj_info == null); + assertTrue("H5Oget_info_by_idx link type", obj_info.type == HDF5Constants.H5O_TYPE_GROUP); } @Test - public void testH5Oget_info_softlink() { + public void testH5Oget_info_softlink() + { H5O_info_t obj_info = null; _createSoftLink(H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); try { @@ -263,21 +311,24 @@ public class TestH5Ocreate { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } - assertFalse("H5Oget_info", obj_info==null); - assertTrue("H5Oget_info link type", obj_info.type==HDF5Constants.H5O_TYPE_DATASET); + assertFalse("H5Oget_info", obj_info == null); + assertTrue("H5Oget_info link type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET); assertTrue("Link Object Token", obj_info.token != null); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_info_softlink_dangle() throws Throwable { + public void testH5Oget_info_softlink_dangle() throws Throwable + { _createSoftLink(H5fid, "DS3", H5fid, "L2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5.H5Oget_info_by_name(H5fid, "L2", HDF5Constants.H5P_DEFAULT); } @Test - public void testH5Oget_info_externallink() { + public void testH5Oget_info_externallink() + { H5O_info_t obj_info = null; - _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); try { obj_info = H5.H5Oget_info_by_name(H5fid, "L1", HDF5Constants.H5P_DEFAULT); } @@ -285,18 +336,19 @@ public class TestH5Ocreate { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } - assertFalse("H5Oget_info", obj_info==null); - assertTrue("H5Oget_info link type", obj_info.type==HDF5Constants.H5O_TYPE_NAMED_DATATYPE); + assertFalse("H5Oget_info", obj_info == null); + assertTrue("H5Oget_info link type", obj_info.type == HDF5Constants.H5O_TYPE_NAMED_DATATYPE); assertTrue("Link Object Token", obj_info.token != null); } @Test - public void testH5Olink() { - long oid = HDF5Constants.H5I_INVALID_HID; - H5O_info_t obj_info = null; + public void testH5Olink() + { + long oid = HDF5Constants.H5I_INVALID_HID; + H5O_info_t obj_info = null; H5O_info_t dst_obj_info = null; try { - oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { @@ -311,10 +363,14 @@ public class TestH5Ocreate { err.printStackTrace(); fail("H5.H5Olink: " + err); } - try {H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } - assertFalse("H5Oget_info ", obj_info==null); - assertTrue("H5Oget_info object type", obj_info.type==HDF5Constants.H5O_TYPE_DATASET); + assertFalse("H5Oget_info ", obj_info == null); + assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET); try { dst_obj_info = H5.H5Oget_info_by_name(H5fid, "CPY1", HDF5Constants.H5P_DEFAULT); @@ -323,29 +379,34 @@ public class TestH5Ocreate { err.printStackTrace(); fail("H5.H5Oget_info_by_name: " + err); } - assertFalse("H5Oget_info ", dst_obj_info==null); - assertTrue("H5Oget_info object type", dst_obj_info.type==HDF5Constants.H5O_TYPE_DATASET); + assertFalse("H5Oget_info ", dst_obj_info == null); + assertTrue("H5Oget_info object type", dst_obj_info.type == HDF5Constants.H5O_TYPE_DATASET); } @Test - public void testH5Ovisit_create() { + public void testH5Ovisit_create() + { try { int order = H5.H5Pget_link_creation_order(H5fcpl); - assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED); + assertTrue("creation order :" + order, + order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Ovisit_create:H5Pget_link_creation_order " + err); } - _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); _createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); class idata { public String link_name = null; - public int link_type = -1; - idata(String name, int type) { + public int link_type = -1; + idata(String name, int type) + { this.link_name = name; this.link_type = type; } @@ -355,7 +416,8 @@ public class TestH5Ocreate { } H5O_iterate_opdata_t iter_data = new H5O_iter_data(); class H5O_iter_callback implements H5O_iterate_t { - public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) { + public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) + { idata id = new idata(name, info.type); ((H5O_iter_data)op_data).iterdata.add(id); return 0; @@ -363,23 +425,34 @@ public class TestH5Ocreate { } H5O_iterate_t iter_cb = new H5O_iter_callback(); try { - H5.H5Ovisit(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, iter_cb, iter_data); + H5.H5Ovisit(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, iter_cb, + iter_data); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Ovisit: " + err); } assertFalse("H5Ovisit ", ((H5O_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Ovisit "+((H5O_iter_data)iter_data).iterdata.size(), ((H5O_iter_data)iter_data).iterdata.size()==4); - assertTrue("H5Ovisit "+((idata)((H5O_iter_data)iter_data).iterdata.get(0)).link_name, ((idata)((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".")==0); - assertTrue("H5Ovisit "+((idata)((H5O_iter_data)iter_data).iterdata.get(1)).link_name, ((idata)((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS1")==0); - assertTrue("H5Ovisit "+((idata)((H5O_iter_data)iter_data).iterdata.get(2)).link_name, ((idata)((H5O_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1")==0); - assertTrue("H5Ovisit "+((idata)((H5O_iter_data)iter_data).iterdata.get(3)).link_name, ((idata)((H5O_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1/DS2")==0); + assertTrue("H5Ovisit " + ((H5O_iter_data)iter_data).iterdata.size(), + ((H5O_iter_data)iter_data).iterdata.size() == 4); + assertTrue("H5Ovisit " + ((idata)((H5O_iter_data)iter_data).iterdata.get(0)).link_name, + ((idata)((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".") == + 0); + assertTrue("H5Ovisit " + ((idata)((H5O_iter_data)iter_data).iterdata.get(1)).link_name, + ((idata)((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS1") == + 0); + assertTrue("H5Ovisit " + ((idata)((H5O_iter_data)iter_data).iterdata.get(2)).link_name, + ((idata)((H5O_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1") == + 0); + assertTrue( + "H5Ovisit " + ((idata)((H5O_iter_data)iter_data).iterdata.get(3)).link_name, + ((idata)((H5O_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1/DS2") == 0); } @Test - public void testH5Ocomment() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Ocomment() + { + long oid = HDF5Constants.H5I_INVALID_HID; String obj_comment = null; try { oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); @@ -397,14 +470,19 @@ public class TestH5Ocreate { err.printStackTrace(); fail("H5.H5Oget_comment: " + err); } - try {H5.H5Oclose(oid);} catch (Exception ex) {} - assertFalse("H5Oget_comment: ", obj_comment==null); - assertTrue("H5Oget_comment: ", obj_comment.compareTo("Test Comment")==0); + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } + assertFalse("H5Oget_comment: ", obj_comment == null); + assertTrue("H5Oget_comment: ", obj_comment.compareTo("Test Comment") == 0); } @Test - public void testH5Ocomment_clear() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Ocomment_clear() + { + long oid = HDF5Constants.H5I_INVALID_HID; String obj_comment = null; try { oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); @@ -422,8 +500,8 @@ public class TestH5Ocreate { err.printStackTrace(); fail("H5.H5Oget_comment: " + err); } - assertFalse("H5Oget_comment: ", obj_comment==null); - assertTrue("H5Oget_comment: ", obj_comment.compareTo("Test Comment")==0); + assertFalse("H5Oget_comment: ", obj_comment == null); + assertTrue("H5Oget_comment: ", obj_comment.compareTo("Test Comment") == 0); try { H5.H5Oset_comment(oid, null); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); @@ -439,12 +517,17 @@ public class TestH5Ocreate { err.printStackTrace(); fail("H5.H5Oget_comment: " + err); } - try {H5.H5Oclose(oid);} catch (Exception ex) {} - assertTrue("H5Oget_comment: ", obj_comment==null); + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } + assertTrue("H5Oget_comment: ", obj_comment == null); } @Test - public void testH5Ocomment_by_name() { + public void testH5Ocomment_by_name() + { String obj_comment = null; try { H5.H5Oset_comment_by_name(H5fid, "DS1", "Test Comment", HDF5Constants.H5P_DEFAULT); @@ -461,12 +544,13 @@ public class TestH5Ocreate { err.printStackTrace(); fail("H5.H5Oget_comment_by_name: " + err); } - assertFalse("H5Oget_comment_by_name: ", obj_comment==null); - assertTrue("H5Oget_comment_by_name: ", obj_comment.compareTo("Test Comment")==0); + assertFalse("H5Oget_comment_by_name: ", obj_comment == null); + assertTrue("H5Oget_comment_by_name: ", obj_comment.compareTo("Test Comment") == 0); } @Test - public void testH5Ocomment_by_name_clear() { + public void testH5Ocomment_by_name_clear() + { String obj_comment = null; try { H5.H5Oset_comment_by_name(H5fid, "DS1", "Test Comment", HDF5Constants.H5P_DEFAULT); @@ -483,8 +567,8 @@ public class TestH5Ocreate { err.printStackTrace(); fail("H5.H5Oget_comment_by_name: " + err); } - assertFalse("H5Oget_comment_by_name: ", obj_comment==null); - assertTrue("H5Oget_comment_by_name: ", obj_comment.compareTo("Test Comment")==0); + assertFalse("H5Oget_comment_by_name: ", obj_comment == null); + assertTrue("H5Oget_comment_by_name: ", obj_comment.compareTo("Test Comment") == 0); try { H5.H5Oset_comment_by_name(H5fid, "DS1", null, HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); @@ -500,19 +584,20 @@ public class TestH5Ocreate { err.printStackTrace(); fail("H5.H5Oget_comment_by_name: " + err); } - assertTrue("H5Oget_comment_by_name: ", obj_comment==null); + assertTrue("H5Oget_comment_by_name: ", obj_comment == null); } @Test - public void testH5Oinc_dec_count() { - long oid = HDF5Constants.H5I_INVALID_HID; + public void testH5Oinc_dec_count() + { + long oid = HDF5Constants.H5I_INVALID_HID; H5O_info_t obj_info = null; try { try { - oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT); + oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); - assertFalse("testH5Oinc_dec_count: H5Oget_info ",obj_info==null); - assertTrue("testH5Oinc_dec_count: H5Oget_info reference count",obj_info.rc==1); + assertFalse("testH5Oinc_dec_count: H5Oget_info ", obj_info == null); + assertTrue("testH5Oinc_dec_count: H5Oget_info reference count", obj_info.rc == 1); } catch (Throwable err) { err.printStackTrace(); @@ -527,8 +612,8 @@ public class TestH5Ocreate { } try { obj_info = H5.H5Oget_info(oid); - assertFalse("testH5Oinc_dec_count: H5Oget_info ",obj_info==null); - assertTrue("testH5Oinc_dec_count: H5Oget_info reference count",obj_info.rc==2); + assertFalse("testH5Oinc_dec_count: H5Oget_info ", obj_info == null); + assertTrue("testH5Oinc_dec_count: H5Oget_info reference count", obj_info.rc == 2); } catch (Throwable err) { err.printStackTrace(); @@ -543,8 +628,8 @@ public class TestH5Ocreate { } try { obj_info = H5.H5Oget_info(oid); - assertFalse("testH5Oinc_dec_count: H5Oget_info ",obj_info==null); - assertTrue("testH5Oinc_dec_count: H5Oget_info reference count",obj_info.rc==1); + assertFalse("testH5Oinc_dec_count: H5Oget_info ", obj_info == null); + assertTrue("testH5Oinc_dec_count: H5Oget_info reference count", obj_info.rc == 1); } catch (Throwable err) { err.printStackTrace(); @@ -552,12 +637,17 @@ public class TestH5Ocreate { } } finally { - try{H5.H5Oclose(oid);} catch (Exception ex) {} + try { + H5.H5Oclose(oid); + } + catch (Exception ex) { + } } } @Test - public void testH5Ocork() { + public void testH5Ocork() + { boolean corked = false; // Check cork status of the group: not corked @@ -608,5 +698,4 @@ public class TestH5Ocreate { } assertFalse("H5Oare_mdc_flushes_disabled: ", corked); } - } diff --git a/java/test/TestH5Oparams.java b/java/test/TestH5Oparams.java index 5cbabe1..280e9fd 100644 --- a/java/test/TestH5Oparams.java +++ b/java/test/TestH5Oparams.java @@ -13,6 +13,7 @@ package test; import static org.junit.Assert.assertTrue; + import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5LibraryException; @@ -25,177 +26,211 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Oparams { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); @Before - public void checkOpenIDs() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void checkOpenIDs() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @After - public void nextTestName() { + public void nextTestName() + { System.out.println(); } - @Test//(expected = HDF5LibraryException.class) - public void testH5Oclose_invalid() throws Throwable { + @Test //(expected = HDF5LibraryException.class) + public void testH5Oclose_invalid() throws Throwable + { long oid = H5.H5Oclose(-1); assertTrue(oid == 0); } @Test(expected = NullPointerException.class) - public void testH5Oopen_null() throws Throwable { + public void testH5Oopen_null() throws Throwable + { H5.H5Oopen(-1, null, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Oopen_invalid() throws Throwable { + public void testH5Oopen_invalid() throws Throwable + { H5.H5Oopen(-1, "Bogus", 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Ocopy_invalid() throws Throwable { + public void testH5Ocopy_invalid() throws Throwable + { H5.H5Ocopy(-1, "Bogus", -1, "Bogus", -1, -1); } @Test(expected = NullPointerException.class) - public void testH5Ocopy_null_current() throws Throwable { + public void testH5Ocopy_null_current() throws Throwable + { H5.H5Ocopy(-1, null, 0, "Bogus", 0, 0); } @Test(expected = NullPointerException.class) - public void testH5Ocopy_null_dest() throws Throwable { + public void testH5Ocopy_null_dest() throws Throwable + { H5.H5Ocopy(-1, "Bogus", 0, null, 0, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_info_invalid() throws Throwable { + public void testH5Oget_info_invalid() throws Throwable + { H5.H5Oget_info(-1, 0); } @Test(expected = NullPointerException.class) - public void testH5Oget_info_by_name_null() throws Throwable { + public void testH5Oget_info_by_name_null() throws Throwable + { H5.H5Oget_info_by_name(-1, null, 0, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_info_by_name_invalid() throws Throwable { + public void testH5Oget_info_by_name_invalid() throws Throwable + { H5.H5Oget_info_by_name(-1, "/testH5Gcreate", 0, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_info_by_idx_invalid() throws Throwable { + public void testH5Oget_info_by_idx_invalid() throws Throwable + { H5.H5Oget_info_by_idx(-1, "Bogus", -1, -1, -1L, 0, -1); } @Test(expected = NullPointerException.class) - public void testH5Oget_info_by_idx_null() throws Throwable { + public void testH5Oget_info_by_idx_null() throws Throwable + { H5.H5Oget_info_by_idx(-1, null, 0, 0, 0L, 0, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_native_info_invalid() throws Throwable { + public void testH5Oget_native_info_invalid() throws Throwable + { H5.H5Oget_native_info(-1, 0); } @Test(expected = NullPointerException.class) - public void testH5Oget_native_info_by_name_null() throws Throwable { + public void testH5Oget_native_info_by_name_null() throws Throwable + { H5.H5Oget_native_info_by_name(-1, null, 0, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_native_info_by_name_invalid() throws Throwable { + public void testH5Oget_native_info_by_name_invalid() throws Throwable + { H5.H5Oget_native_info_by_name(-1, "/testH5Gcreate", 0, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_native_info_by_idx_invalid() throws Throwable { + public void testH5Oget_native_info_by_idx_invalid() throws Throwable + { H5.H5Oget_native_info_by_idx(-1, "Bogus", -1, -1, -1L, 0, -1); } @Test(expected = NullPointerException.class) - public void testH5Oget_native_info_by_idx_null() throws Throwable { + public void testH5Oget_native_info_by_idx_null() throws Throwable + { H5.H5Oget_native_info_by_idx(-1, null, 0, 0, 0L, 0, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Olink_invalid() throws Throwable { + public void testH5Olink_invalid() throws Throwable + { H5.H5Olink(-1, -1, "Bogus", -1, -1); } @Test(expected = NullPointerException.class) - public void testH5Olink_null_dest() throws Throwable { + public void testH5Olink_null_dest() throws Throwable + { H5.H5Olink(-1, 0, null, 0, 0); } @Test(expected = NullPointerException.class) - public void testH5Ovisit_null() throws Throwable { + public void testH5Ovisit_null() throws Throwable + { H5.H5Ovisit(-1, -1, -1, null, null, 0); } @Test(expected = NullPointerException.class) - public void testH5Ovisit_by_name_nullname() throws Throwable { + public void testH5Ovisit_by_name_nullname() throws Throwable + { H5.H5Ovisit_by_name(-1, null, -1, -1, null, null, 0, -1); } @Test(expected = NullPointerException.class) - public void testH5Ovisit_by_name_null() throws Throwable { + public void testH5Ovisit_by_name_null() throws Throwable + { H5.H5Ovisit_by_name(-1, "Bogus", -1, -1, null, null, 0, -1); } @Test(expected = HDF5LibraryException.class) - public void testH5Oset_comment_invalid() throws Throwable { + public void testH5Oset_comment_invalid() throws Throwable + { H5.H5Oset_comment(-1, "Bogus"); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_comment_invalid() throws Throwable { + public void testH5Oget_comment_invalid() throws Throwable + { H5.H5Oget_comment(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Oset_comment_by_name_invalid() throws Throwable { + public void testH5Oset_comment_by_name_invalid() throws Throwable + { H5.H5Oset_comment_by_name(-1, "Bogus", null, -1); } @Test(expected = NullPointerException.class) - public void testH5Oset_comment_by_name_null() throws Throwable { + public void testH5Oset_comment_by_name_null() throws Throwable + { H5.H5Oset_comment_by_name(-1, null, null, -1); } @Test(expected = HDF5LibraryException.class) - public void testH5Oget_comment_by_name_invalid() throws Throwable { + public void testH5Oget_comment_by_name_invalid() throws Throwable + { H5.H5Oget_comment_by_name(-1, "Bogus", -1); } @Test(expected = NullPointerException.class) - public void testH5Oget_comment_by_name_null() throws Throwable { + public void testH5Oget_comment_by_name_null() throws Throwable + { H5.H5Oget_comment_by_name(-1, null, -1); } @Test(expected = HDF5LibraryException.class) - public void testH5Oflush_invalid() throws Throwable { + public void testH5Oflush_invalid() throws Throwable + { H5.H5Oflush(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Orefresh_invalid() throws Throwable { + public void testH5Orefresh_invalid() throws Throwable + { H5.H5Orefresh(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Odisable_mdc_flushes() throws Throwable { + public void testH5Odisable_mdc_flushes() throws Throwable + { H5.H5Odisable_mdc_flushes(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Oenable_mdc_flushes() throws Throwable { + public void testH5Oenable_mdc_flushes() throws Throwable + { H5.H5Oenable_mdc_flushes(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Oare_mdc_flushes_disabled() throws Throwable { + public void testH5Oare_mdc_flushes_disabled() throws Throwable + { H5.H5Oare_mdc_flushes_disabled(-1); } - } diff --git a/java/test/TestH5P.java b/java/test/TestH5P.java index 6ae93d9..0571e3f 100644 --- a/java/test/TestH5P.java +++ b/java/test/TestH5P.java @@ -34,40 +34,47 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5P { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "testP.h5"; - private static final int DIM_X = 4; - private static final int DIM_Y = 6; - long[] H5dims = { DIM_X, DIM_Y }; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - long lapl_id = HDF5Constants.H5I_INVALID_HID; - long fapl_id = HDF5Constants.H5I_INVALID_HID; - long fcpl_id = HDF5Constants.H5I_INVALID_HID; - long ocpl_id = HDF5Constants.H5I_INVALID_HID; - long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; - long lcpl_id = HDF5Constants.H5I_INVALID_HID; - long plapl_id = HDF5Constants.H5I_INVALID_HID; - long plist_id = HDF5Constants.H5I_INVALID_HID; - long gapl_id = HDF5Constants.H5I_INVALID_HID; - long gcpl_id = HDF5Constants.H5I_INVALID_HID; - long acpl_id = HDF5Constants.H5I_INVALID_HID; - - private final void _deleteFile(String filename) { + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + long[] H5dims = {DIM_X, DIM_Y}; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + long lapl_id = HDF5Constants.H5I_INVALID_HID; + long fapl_id = HDF5Constants.H5I_INVALID_HID; + long fcpl_id = HDF5Constants.H5I_INVALID_HID; + long ocpl_id = HDF5Constants.H5I_INVALID_HID; + long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; + long lcpl_id = HDF5Constants.H5I_INVALID_HID; + long plapl_id = HDF5Constants.H5I_INVALID_HID; + long plist_id = HDF5Constants.H5I_INVALID_HID; + long gapl_id = HDF5Constants.H5I_INVALID_HID; + long gcpl_id = HDF5Constants.H5I_INVALID_HID; + long acpl_id = HDF5Constants.H5I_INVALID_HID; + + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } - private final long _createDataset(long fid, long dsid, String name, long dapl) { + private final long _createDataset(long fid, long dsid, String name, long dapl) + { long did = HDF5Constants.H5I_INVALID_HID; try { - did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -78,12 +85,12 @@ public class TestH5P { return did; } - private final void _createH5File(long fcpl, long fapl) { + private final void _createH5File(long fcpl, long fapl) + { try { - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - fcpl, fapl); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, fcpl, fapl); H5dsid = H5.H5Screate_simple(2, H5dims, null); - H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); + H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -101,28 +108,26 @@ public class TestH5P { } } - public void deleteH5file() throws HDF5LibraryException { - _deleteFile(H5_FILE); - } + public void deleteH5file() throws HDF5LibraryException { _deleteFile(H5_FILE); } @Before - public void createH5fileProperties() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5fileProperties() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { - lapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); - fapl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS); - fcpl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_CREATE); - ocpl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE); + lapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); + fapl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS); + fcpl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_CREATE); + ocpl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE); ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); - lcpl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_CREATE); - plapl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_ACCESS); - plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); - gapl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_ACCESS); - gcpl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); - acpl_id = H5.H5Pcreate(HDF5Constants.H5P_ATTRIBUTE_CREATE); + lcpl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_CREATE); + plapl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_ACCESS); + plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); + gapl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_ACCESS); + gcpl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); + acpl_id = H5.H5Pcreate(HDF5Constants.H5P_ATTRIBUTE_CREATE); } catch (Throwable err) { err.printStackTrace(); @@ -134,51 +139,109 @@ public class TestH5P { assertTrue(ocpl_id > 0); assertTrue(ocp_plist_id > 0); assertTrue(lcpl_id > 0); - assertTrue(plapl_id>0); + assertTrue(plapl_id > 0); assertTrue(plist_id > 0); assertTrue(gapl_id > 0); - assertTrue(gcpl_id >0); - assertTrue(acpl_id >0); + assertTrue(gcpl_id > 0); + assertTrue(acpl_id > 0); } @After - public void deleteH5fileProperties() throws HDF5LibraryException { - if (lapl_id >0) - try {H5.H5Pclose(lapl_id);} catch (Exception ex) {} - if (fapl_id >0) - try {H5.H5Pclose(fapl_id);} catch (Exception ex) {} - if (fcpl_id >0) - try {H5.H5Pclose(fcpl_id);} catch (Exception ex) {} - if (ocpl_id >0) - try {H5.H5Pclose(ocpl_id);} catch (Exception ex) {} - if (ocp_plist_id >0) - try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {} - if (lcpl_id >0) - try {H5.H5Pclose(lcpl_id);} catch (Exception ex) {} - if (plapl_id >0) - try {H5.H5Pclose(plapl_id);} catch (Exception ex) {} - if (plist_id >0) - try {H5.H5Pclose(plist_id);} catch (Exception ex) {} - if (gapl_id >0) - try {H5.H5Pclose(gapl_id);} catch (Exception ex) {} - if (gcpl_id >0) - try {H5.H5Pclose(gcpl_id);} catch (Exception ex) {} - if (acpl_id >0) - try {H5.H5Pclose(acpl_id);} catch (Exception ex) {} + public void deleteH5fileProperties() throws HDF5LibraryException + { + if (lapl_id > 0) + try { + H5.H5Pclose(lapl_id); + } + catch (Exception ex) { + } + if (fapl_id > 0) + try { + H5.H5Pclose(fapl_id); + } + catch (Exception ex) { + } + if (fcpl_id > 0) + try { + H5.H5Pclose(fcpl_id); + } + catch (Exception ex) { + } + if (ocpl_id > 0) + try { + H5.H5Pclose(ocpl_id); + } + catch (Exception ex) { + } + if (ocp_plist_id > 0) + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception ex) { + } + if (lcpl_id > 0) + try { + H5.H5Pclose(lcpl_id); + } + catch (Exception ex) { + } + if (plapl_id > 0) + try { + H5.H5Pclose(plapl_id); + } + catch (Exception ex) { + } + if (plist_id > 0) + try { + H5.H5Pclose(plist_id); + } + catch (Exception ex) { + } + if (gapl_id > 0) + try { + H5.H5Pclose(gapl_id); + } + catch (Exception ex) { + } + if (gcpl_id > 0) + try { + H5.H5Pclose(gcpl_id); + } + catch (Exception ex) { + } + if (acpl_id > 0) + try { + H5.H5Pclose(acpl_id); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } System.out.println(); } @Test - public void testH5Pget_nlinks() { + public void testH5Pget_nlinks() + { long nlinks = -1; try { - nlinks = (long) H5.H5Pget_nlinks(lapl_id); + nlinks = (long)H5.H5Pget_nlinks(lapl_id); } catch (Throwable err) { err.printStackTrace(); @@ -190,12 +253,13 @@ public class TestH5P { } @Test - public void testH5Pset_nlinks() { + public void testH5Pset_nlinks() + { long nlinks = 20; int ret_val = -1; try { ret_val = H5.H5Pset_nlinks(lapl_id, nlinks); - nlinks = (long) H5.H5Pget_nlinks(lapl_id); + nlinks = (long)H5.H5Pget_nlinks(lapl_id); } catch (Throwable err) { err.printStackTrace(); @@ -207,17 +271,22 @@ public class TestH5P { } @Test(expected = HDF5FunctionArgumentException.class) - public void testH5Pset_libver_bounds_invalidlow() throws Throwable { - H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST+1, HDF5Constants.H5F_LIBVER_LATEST); + public void testH5Pset_libver_bounds_invalidlow() throws Throwable + { + H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST + 1, + HDF5Constants.H5F_LIBVER_LATEST); } @Test(expected = HDF5FunctionArgumentException.class) - public void testH5Pset_libver_bounds_invalidhigh() throws Throwable { - H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST, HDF5Constants.H5F_LIBVER_LATEST+1); + public void testH5Pset_libver_bounds_invalidhigh() throws Throwable + { + H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST, + HDF5Constants.H5F_LIBVER_LATEST + 1); } @Test - public void testH5Pget_link_creation_order() { + public void testH5Pget_link_creation_order() + { int crt_order_flags = 0; try { crt_order_flags = H5.H5Pget_link_creation_order(fcpl_id); @@ -230,47 +299,51 @@ public class TestH5P { } @Test - public void testH5Pset_link_creation_order_trackedPLUSindexed() { - int ret_val = -1; + public void testH5Pset_link_creation_order_trackedPLUSindexed() + { + int ret_val = -1; int crt_order_flags = HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED; - int crtorderflags = 0; + int crtorderflags = 0; try { - ret_val = H5.H5Pset_link_creation_order(fcpl_id, crt_order_flags); + ret_val = H5.H5Pset_link_creation_order(fcpl_id, crt_order_flags); crtorderflags = H5.H5Pget_link_creation_order(fcpl_id); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_link_creation_order: " + err); } - assertTrue("testH5Pset_link_creation_order_trackedPLUSindexed",ret_val >= 0); + assertTrue("testH5Pset_link_creation_order_trackedPLUSindexed", ret_val >= 0); assertEquals(crt_order_flags, crtorderflags); } @Test - public void testH5Pset_link_creation_order_tracked() { - int ret_val = -1; + public void testH5Pset_link_creation_order_tracked() + { + int ret_val = -1; int crtorderflags = 0; try { - ret_val = H5.H5Pset_link_creation_order(fcpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED); + ret_val = H5.H5Pset_link_creation_order(fcpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED); crtorderflags = H5.H5Pget_link_creation_order(fcpl_id); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_link_creation_order: " + err); } - assertTrue("testH5Pset_link_creation_order_tracked",ret_val >= 0); + assertTrue("testH5Pset_link_creation_order_tracked", ret_val >= 0); assertEquals(HDF5Constants.H5P_CRT_ORDER_TRACKED, crtorderflags); } @Test(expected = HDF5LibraryException.class) - public void testH5Pset_link_creation_order_invalidvalue() throws Throwable { + public void testH5Pset_link_creation_order_invalidvalue() throws Throwable + { H5.H5Pset_link_creation_order(fcpl_id, HDF5Constants.H5P_CRT_ORDER_INDEXED); } @Test - public void testH5Pget_attr_creation_order() { + public void testH5Pget_attr_creation_order() + { int crt_order_flags = 0; try { @@ -284,13 +357,14 @@ public class TestH5P { } @Test - public void testH5Pset_attr_creation_order_trackedPLUSindexed() { - int ret_val = -1; + public void testH5Pset_attr_creation_order_trackedPLUSindexed() + { + int ret_val = -1; int crt_order_flags = HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED; - int crtorderflags = 0; + int crtorderflags = 0; try { - ret_val = H5.H5Pset_attr_creation_order(ocpl_id, crt_order_flags); + ret_val = H5.H5Pset_attr_creation_order(ocpl_id, crt_order_flags); crtorderflags = H5.H5Pget_attr_creation_order(ocpl_id); } catch (Throwable err) { @@ -302,12 +376,13 @@ public class TestH5P { } @Test - public void testH5Pset_attr_creation_order_tracked() { - int ret_val = -1; + public void testH5Pset_attr_creation_order_tracked() + { + int ret_val = -1; int crtorderflags = 0; try { - ret_val = H5.H5Pset_attr_creation_order(ocpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED); + ret_val = H5.H5Pset_attr_creation_order(ocpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED); crtorderflags = H5.H5Pget_attr_creation_order(ocpl_id); } catch (Throwable err) { @@ -319,12 +394,14 @@ public class TestH5P { } @Test(expected = HDF5LibraryException.class) - public void testH5Pset_attr_creation_order_invalidvalue() throws Throwable { + public void testH5Pset_attr_creation_order_invalidvalue() throws Throwable + { H5.H5Pset_attr_creation_order(ocpl_id, HDF5Constants.H5P_CRT_ORDER_INDEXED); } @Test - public void testH5Pset_copy_object() { + public void testH5Pset_copy_object() + { int cpy_option = -1; @@ -350,12 +427,14 @@ public class TestH5P { } @Test(expected = HDF5LibraryException.class) - public void testH5Pset_copy_object_invalidobject() throws Throwable { + public void testH5Pset_copy_object_invalidobject() throws Throwable + { H5.H5Pset_copy_object(HDF5Constants.H5P_DEFAULT, HDF5Constants.H5O_COPY_SHALLOW_HIERARCHY_FLAG); } @Test - public void testH5Pset_create_intermediate_group() { + public void testH5Pset_create_intermediate_group() + { int ret_val = -1; try { @@ -365,16 +444,18 @@ public class TestH5P { err.printStackTrace(); fail("H5Pset_create_intermediate_group: " + err); } - assertTrue(ret_val>=0); + assertTrue(ret_val >= 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Pset_create_intermediate_group_invalidobject() throws Throwable { + public void testH5Pset_create_intermediate_group_invalidobject() throws Throwable + { H5.H5Pset_create_intermediate_group(ocp_plist_id, true); } @Test - public void testH5Pget_create_intermediate_group() { + public void testH5Pget_create_intermediate_group() + { boolean flag = false; try { H5.H5Pset_create_intermediate_group(lcpl_id, true); @@ -388,7 +469,8 @@ public class TestH5P { } @Test - public void testH5Pget_create_intermediate_group_notcreated() { + public void testH5Pget_create_intermediate_group_notcreated() + { boolean flag = true; try { flag = H5.H5Pget_create_intermediate_group(lcpl_id); @@ -401,43 +483,48 @@ public class TestH5P { } @Test - public void testH5Pset_data_transform() { + public void testH5Pset_data_transform() + { String expression = "(5/9.0)*(x-32)"; - int ret_val = -1; + int ret_val = -1; try { - ret_val= H5.H5Pset_data_transform(plist_id, expression); + ret_val = H5.H5Pset_data_transform(plist_id, expression); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_data_transform: " + err); } - assertTrue(ret_val>=0); + assertTrue(ret_val >= 0); } @Test(expected = NullPointerException.class) - public void testH5Pset_data_transform_NullExpression() throws Throwable { + public void testH5Pset_data_transform_NullExpression() throws Throwable + { H5.H5Pset_data_transform(plist_id, null); } @Test(expected = HDF5LibraryException.class) - public void testH5Pset_data_transform_InvalidExpression1() throws Throwable { + public void testH5Pset_data_transform_InvalidExpression1() throws Throwable + { H5.H5Pset_data_transform(plist_id, ""); } @Test(expected = HDF5LibraryException.class) - public void testH5Pset_data_transform_InvalidExpression2() throws Throwable { + public void testH5Pset_data_transform_InvalidExpression2() throws Throwable + { H5.H5Pset_data_transform(plist_id, "hello"); } @Test - public void testH5Pget_data_transform() { + public void testH5Pget_data_transform() + { String expression = "(5/9.0)*(x-32)"; - String [] express = {""}; + String[] express = {""}; long express_size = 0; - long size = 20; + long size = 20; try { H5.H5Pset_data_transform(plist_id, expression); @@ -447,25 +534,28 @@ public class TestH5P { err.printStackTrace(); fail("H5Pget_data_transform: " + err); } - assertTrue(express_size>=0); + assertTrue(express_size >= 0); assertTrue("The data transform expression: ", expression.equals(express[0])); } @Test(expected = HDF5LibraryException.class) - public void testH5Pget_data_transform_ExpressionNotSet() throws Throwable { - String [] express = {""}; + public void testH5Pget_data_transform_ExpressionNotSet() throws Throwable + { + String[] express = {""}; H5.H5Pget_data_transform(plist_id, express, 20); } @Test(expected = IllegalArgumentException.class) - public void testH5Pget_data_transform_IllegalSize() throws Throwable { - String [] express = {""}; + public void testH5Pget_data_transform_IllegalSize() throws Throwable + { + String[] express = {""}; H5.H5Pset_data_transform(plist_id, "(5/9.0)*(x-32)"); H5.H5Pget_data_transform(plist_id, express, 0); } @Test - public void testH5Pget_elink_acc_flags() { + public void testH5Pget_elink_acc_flags() + { int get_flags = -1; try { @@ -480,12 +570,13 @@ public class TestH5P { } @Test - public void testH5Pset_elink_acc_flags() { + public void testH5Pset_elink_acc_flags() + { int get_flags = -1; - int ret_val = -1; + int ret_val = -1; try { - ret_val = H5.H5Pset_elink_acc_flags(lapl_id, HDF5Constants.H5F_ACC_RDWR); + ret_val = H5.H5Pset_elink_acc_flags(lapl_id, HDF5Constants.H5F_ACC_RDWR); get_flags = H5.H5Pget_elink_acc_flags(lapl_id); } catch (Throwable err) { @@ -497,21 +588,24 @@ public class TestH5P { } @Test(expected = HDF5FunctionArgumentException.class) - public void testH5Pset_elink_acc_flags_InvalidFlag1() throws Throwable { + public void testH5Pset_elink_acc_flags_InvalidFlag1() throws Throwable + { H5.H5Pset_elink_acc_flags(lapl_id, HDF5Constants.H5F_ACC_TRUNC); } @Test(expected = HDF5FunctionArgumentException.class) - public void testH5Pset_elink_acc_flags_InvalidFlag2() throws Throwable { + public void testH5Pset_elink_acc_flags_InvalidFlag2() throws Throwable + { H5.H5Pset_elink_acc_flags(lapl_id, -1); } @Test - public void testH5Pset_link_phase_change() { + public void testH5Pset_link_phase_change() + { int ret_val = -1; try { - ret_val = H5.H5Pset_link_phase_change(fcpl_id , 2, 2); + ret_val = H5.H5Pset_link_phase_change(fcpl_id, 2, 2); } catch (Throwable err) { err.printStackTrace(); @@ -521,17 +615,20 @@ public class TestH5P { } @Test(expected = IllegalArgumentException.class) - public void testH5Pset_link_phase_change_Highmax_Compact() throws Throwable { - H5.H5Pset_link_phase_change(fcpl_id , 70000000, 3); + public void testH5Pset_link_phase_change_Highmax_Compact() throws Throwable + { + H5.H5Pset_link_phase_change(fcpl_id, 70000000, 3); } @Test(expected = IllegalArgumentException.class) - public void testH5Pset_link_phase_change_max_compactLESSTHANmin_dense() throws Throwable { - H5.H5Pset_link_phase_change(fcpl_id , 5, 6); + public void testH5Pset_link_phase_change_max_compactLESSTHANmin_dense() throws Throwable + { + H5.H5Pset_link_phase_change(fcpl_id, 5, 6); } @Test - public void testH5Pget_link_phase_change() { + public void testH5Pget_link_phase_change() + { int ret_val = -1; int[] links = new int[2]; @@ -548,10 +645,11 @@ public class TestH5P { } @Test - public void testH5Pget_link_phase_change_EqualsSet() { + public void testH5Pget_link_phase_change_EqualsSet() + { int[] links = new int[2]; try { - H5.H5Pset_link_phase_change(fcpl_id , 10, 7); + H5.H5Pset_link_phase_change(fcpl_id, 10, 7); H5.H5Pget_link_phase_change(fcpl_id, links); } catch (Throwable err) { @@ -563,13 +661,15 @@ public class TestH5P { } @Test(expected = NullPointerException.class) - public void testH5Pget_link_phase_change_Null() throws Throwable { + public void testH5Pget_link_phase_change_Null() throws Throwable + { H5.H5Pget_link_phase_change(fcpl_id, null); } @Test - public void testH5Pget_attr_phase_change() { - int ret_val = -1; + public void testH5Pget_attr_phase_change() + { + int ret_val = -1; int[] attributes = new int[2]; try { @@ -580,7 +680,8 @@ public class TestH5P { fail("H5Pget_attr_phase_change: " + err); } assertTrue("testH5Pget_attr_phase_change", ret_val >= 0); - assertEquals("Default value of the max. no. of attributes stored in compact storage", 8, attributes[0]); + assertEquals("Default value of the max. no. of attributes stored in compact storage", 8, + attributes[0]); assertEquals("Default value of the min. no. of attributes stored in dense storage", 6, attributes[1]); try { H5.H5Pset_attr_phase_change(ocpl_id, 9, 5); @@ -597,14 +698,16 @@ public class TestH5P { fail("H5Pget_attr_phase_change: " + err); } assertTrue("testH5Pget_attr_phase_change", ret_val >= 0); - assertEquals("Default value of the max. no. of attributes stored in compact storage", 9, attributes[0]); + assertEquals("Default value of the max. no. of attributes stored in compact storage", 9, + attributes[0]); assertEquals("Default value of the min. no. of attributes stored in dense storage", 5, attributes[1]); } @Test - public void testH5Pget_shared_mesg_phase_change() { + public void testH5Pget_shared_mesg_phase_change() + { int ret_val = -1; - int[] size = new int[2]; + int[] size = new int[2]; try { ret_val = H5.H5Pget_shared_mesg_phase_change(fcpl_id, size); @@ -617,11 +720,12 @@ public class TestH5P { } @Test - public void testH5Pget_shared_mesg_phase_change_EqualsSET() { + public void testH5Pget_shared_mesg_phase_change_EqualsSET() + { int[] size = new int[2]; try { - H5.H5Pset_shared_mesg_phase_change(fcpl_id,50, 40); + H5.H5Pset_shared_mesg_phase_change(fcpl_id, 50, 40); H5.H5Pget_shared_mesg_phase_change(fcpl_id, size); } catch (Throwable err) { @@ -633,11 +737,12 @@ public class TestH5P { } @Test - public void testH5Pset_shared_mesg_phase_change() { + public void testH5Pset_shared_mesg_phase_change() + { int ret_val = -1; try { - ret_val = H5.H5Pset_shared_mesg_phase_change(fcpl_id,2, 1); + ret_val = H5.H5Pset_shared_mesg_phase_change(fcpl_id, 2, 1); } catch (Throwable err) { err.printStackTrace(); @@ -647,22 +752,26 @@ public class TestH5P { } @Test(expected = IllegalArgumentException.class) - public void testH5PH5Pset_shared_mesg_phase_change_HighMaxlistValue() throws Throwable { + public void testH5PH5Pset_shared_mesg_phase_change_HighMaxlistValue() throws Throwable + { H5.H5Pset_shared_mesg_phase_change(fcpl_id, 5001, 4000); } @Test(expected = IllegalArgumentException.class) - public void testH5PH5Pset_shared_mesg_phase_change_HighMinbtreeValue() throws Throwable { + public void testH5PH5Pset_shared_mesg_phase_change_HighMinbtreeValue() throws Throwable + { H5.H5Pset_shared_mesg_phase_change(fcpl_id, 5000, 5001); } @Test(expected = IllegalArgumentException.class) - public void testH5PH5Pset_shared_mesg_phase_change_MinbtreeGreaterThanMaxlist() throws Throwable { - H5.H5Pset_link_phase_change(fcpl_id , 3, 7); + public void testH5PH5Pset_shared_mesg_phase_change_MinbtreeGreaterThanMaxlist() throws Throwable + { + H5.H5Pset_link_phase_change(fcpl_id, 3, 7); } @Test - public void testH5Pget_shared_mesg_nindexes() { + public void testH5Pget_shared_mesg_nindexes() + { int nindexes = -1; try { @@ -676,12 +785,13 @@ public class TestH5P { } @Test - public void testH5Pset_shared_mesg_nindexes() { + public void testH5Pset_shared_mesg_nindexes() + { int nindexes = -1; - int ret_val = -1; + int ret_val = -1; try { - ret_val = H5.H5Pset_shared_mesg_nindexes(fcpl_id, 7); + ret_val = H5.H5Pset_shared_mesg_nindexes(fcpl_id, 7); nindexes = H5.H5Pget_shared_mesg_nindexes(fcpl_id); } catch (Throwable err) { @@ -689,21 +799,23 @@ public class TestH5P { fail("H5Pset_shared_mesg_nindexes: " + err); } assertTrue("H5Pset_shared_mesg_nindexes", ret_val >= 0); - assertEquals("Value of nindexes is equal to value set",7 ,nindexes); + assertEquals("Value of nindexes is equal to value set", 7, nindexes); } @Test(expected = IllegalArgumentException.class) - public void testH5Pset_shared_mesg_nindexes_InvalidHIGHnindexes()throws Throwable { + public void testH5Pset_shared_mesg_nindexes_InvalidHIGHnindexes() throws Throwable + { H5.H5Pset_shared_mesg_nindexes(fcpl_id, 9); } @Test - public void testH5Pset_shared_mesg_index() { + public void testH5Pset_shared_mesg_index() + { int ret_val = -1; try { H5.H5Pset_shared_mesg_nindexes(fcpl_id, 2); - ret_val = H5.H5Pset_shared_mesg_index(fcpl_id, 0,HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10); + ret_val = H5.H5Pset_shared_mesg_index(fcpl_id, 0, HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10); } catch (Throwable err) { err.printStackTrace(); @@ -713,24 +825,27 @@ public class TestH5P { } @Test(expected = IllegalArgumentException.class) - public void testH5Pset_shared_mesg_index_Invalid_indexnum() throws Throwable { - H5.H5Pset_shared_mesg_index(fcpl_id, 2,HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10); + public void testH5Pset_shared_mesg_index_Invalid_indexnum() throws Throwable + { + H5.H5Pset_shared_mesg_index(fcpl_id, 2, HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10); } @Test(expected = IllegalArgumentException.class) - public void testH5Pset_shared_mesg_index_InvalidFlag() throws Throwable { + public void testH5Pset_shared_mesg_index_InvalidFlag() throws Throwable + { H5.H5Pset_shared_mesg_nindexes(fcpl_id, 7); - H5.H5Pset_shared_mesg_index(fcpl_id, 2,HDF5Constants.H5O_SHMESG_ALL_FLAG + 1, 10); + H5.H5Pset_shared_mesg_index(fcpl_id, 2, HDF5Constants.H5O_SHMESG_ALL_FLAG + 1, 10); } @Test - public void testH5Pget_shared_mesg_index() { + public void testH5Pget_shared_mesg_index() + { - int ret_val = -1; + int ret_val = -1; int[] mesg_info = new int[2]; try { H5.H5Pset_shared_mesg_nindexes(fcpl_id, 2); - H5.H5Pset_shared_mesg_index(fcpl_id, 0,HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10); + H5.H5Pset_shared_mesg_index(fcpl_id, 0, HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10); ret_val = H5.H5Pget_shared_mesg_index(fcpl_id, 0, mesg_info); } catch (Throwable err) { @@ -743,13 +858,15 @@ public class TestH5P { } @Test(expected = IllegalArgumentException.class) - public void testH5Pget_shared_mesg_index_Invalid_indexnum() throws Throwable { + public void testH5Pget_shared_mesg_index_Invalid_indexnum() throws Throwable + { int[] mesg_info = new int[2]; H5.H5Pget_shared_mesg_index(fcpl_id, 0, mesg_info); } @Test - public void testH5Pset_local_heap_size_hint() { + public void testH5Pset_local_heap_size_hint() + { int ret_val = -1; try { ret_val = H5.H5Pset_local_heap_size_hint(gcpl_id, 0); @@ -762,7 +879,8 @@ public class TestH5P { } @Test - public void testH5Pget_local_heap_size_hint() { + public void testH5Pget_local_heap_size_hint() + { long size_hint = -1; try { size_hint = H5.H5Pget_local_heap_size_hint(gcpl_id); @@ -775,7 +893,8 @@ public class TestH5P { } @Test - public void testH5Pset_nbit() { + public void testH5Pset_nbit() + { int ret_val = -1; try { ret_val = H5.H5Pset_nbit(ocpl_id); @@ -788,9 +907,10 @@ public class TestH5P { } @Test - public void testH5Pset_scaleoffset() { - int ret_val = -1; - int scale_type = HDF5Constants.H5Z_SO_FLOAT_DSCALE; + public void testH5Pset_scaleoffset() + { + int ret_val = -1; + int scale_type = HDF5Constants.H5Z_SO_FLOAT_DSCALE; int scale_factor = HDF5Constants.H5Z_SO_INT_MINBITS_DEFAULT; try { ret_val = H5.H5Pset_scaleoffset(ocpl_id, scale_type, scale_factor); @@ -803,20 +923,23 @@ public class TestH5P { } @Test(expected = IllegalArgumentException.class) - public void testH5Pset_scaleoffset_Invalidscale_type() throws Throwable { + public void testH5Pset_scaleoffset_Invalidscale_type() throws Throwable + { H5.H5Pset_scaleoffset(ocpl_id, 3, 1); } @Test(expected = IllegalArgumentException.class) - public void testH5Pset_scaleoffset_Invalidscale_factor() throws Throwable { + public void testH5Pset_scaleoffset_Invalidscale_factor() throws Throwable + { H5.H5Pset_scaleoffset(ocpl_id, HDF5Constants.H5Z_SO_INT, -1); } @Test - public void testH5Pset_est_link_info() { + public void testH5Pset_est_link_info() + { int ret_val = -1; try { - ret_val = H5.H5Pset_est_link_info(gcpl_id, 0,10); + ret_val = H5.H5Pset_est_link_info(gcpl_id, 0, 10); } catch (Throwable err) { err.printStackTrace(); @@ -826,13 +949,15 @@ public class TestH5P { } @Test(expected = IllegalArgumentException.class) - public void testH5Pset_est_link_info_InvalidValues() throws Throwable { - H5.H5Pset_est_link_info(gcpl_id, 100000,10); + public void testH5Pset_est_link_info_InvalidValues() throws Throwable + { + H5.H5Pset_est_link_info(gcpl_id, 100000, 10); } @Test - public void testH5Pget_est_link_info() { - int ret_val = -1; + public void testH5Pget_est_link_info() + { + int ret_val = -1; int[] link_info = new int[2]; try { ret_val = H5.H5Pget_est_link_info(gcpl_id, link_info); @@ -845,8 +970,9 @@ public class TestH5P { } @Test - public void testH5Pset_elink_prefix() { - int ret_val = -1; + public void testH5Pset_elink_prefix() + { + int ret_val = -1; String prefix = "tmp"; try { ret_val = H5.H5Pset_elink_prefix(plapl_id, prefix); @@ -859,14 +985,16 @@ public class TestH5P { } @Test(expected = NullPointerException.class) - public void testH5Pset_elink_prefix_null() throws Throwable{ + public void testH5Pset_elink_prefix_null() throws Throwable + { H5.H5Pset_elink_prefix(plapl_id, null); } @Test - public void testH5Pget_elink_prefix() { - String prefix = "tmp"; - String[] pre = {""}; + public void testH5Pget_elink_prefix() + { + String prefix = "tmp"; + String[] pre = {""}; long prefix_size = 0; try { @@ -877,22 +1005,25 @@ public class TestH5P { err.printStackTrace(); fail("H5Pget_elink_prefix: " + err); } - assertTrue(prefix_size>=0); + assertTrue(prefix_size >= 0); assertTrue("The prefix: ", prefix.equals(pre[0])); } @Test(expected = NullPointerException.class) - public void testH5Pget_elink_prefix_null() throws Throwable { + public void testH5Pget_elink_prefix_null() throws Throwable + { H5.H5Pget_elink_prefix(plapl_id, null); } @Test(expected = NullPointerException.class) - public void testH5Pget_userblock_null() throws Throwable { + public void testH5Pget_userblock_null() throws Throwable + { H5.H5Pget_userblock(fcpl_id, null); } @Test - public void testH5P_userblock() { + public void testH5P_userblock() + { long[] size = {0}; try { @@ -903,13 +1034,13 @@ public class TestH5P { H5.H5Pclose(fcpl_id); /* Get the file's dataset creation property list */ - fcpl_id = H5.H5Fget_create_plist(H5fid); + fcpl_id = H5.H5Fget_create_plist(H5fid); /* Get the file's version information */ H5F_info2_t finfo = H5.H5Fget_info(H5fid); - assertTrue("super block version: "+finfo.super_version, finfo.super_version == 0); - assertTrue("free-space manager version: "+finfo.free_version, finfo.free_version == 0); - assertTrue("shared object header version: "+finfo.sohm_version, finfo.sohm_version == 0); + assertTrue("super block version: " + finfo.super_version, finfo.super_version == 0); + assertTrue("free-space manager version: " + finfo.free_version, finfo.free_version == 0); + assertTrue("shared object header version: " + finfo.sohm_version, finfo.sohm_version == 0); H5.H5Pget_userblock(fcpl_id, size); deleteH5file(); } @@ -917,17 +1048,19 @@ public class TestH5P { err.printStackTrace(); fail("H5Pget_userblock: " + err); } - assertTrue("user block size: "+size[0], size[0] == 1024); + assertTrue("user block size: " + size[0], size[0] == 1024); } @Test(expected = NullPointerException.class) - public void testH5Pget_sizes_null() throws Throwable { + public void testH5Pget_sizes_null() throws Throwable + { H5.H5Pget_sizes(fcpl_id, null); } @Test - public void testH5P_sizes() { - long[] size = {0,0}; + public void testH5P_sizes() + { + long[] size = {0, 0}; try { H5.H5Pset_sizes(fcpl_id, 4, 8); @@ -937,13 +1070,13 @@ public class TestH5P { H5.H5Pclose(fcpl_id); /* Get the file's dataset creation property list */ - fcpl_id = H5.H5Fget_create_plist(H5fid); + fcpl_id = H5.H5Fget_create_plist(H5fid); /* Get the file's version information */ H5F_info2_t finfo = H5.H5Fget_info(H5fid); - assertTrue("super block version: "+finfo.super_version, finfo.super_version == 0); - assertTrue("free-space manager version: "+finfo.free_version, finfo.free_version == 0); - assertTrue("shared object header version: "+finfo.sohm_version, finfo.sohm_version == 0); + assertTrue("super block version: " + finfo.super_version, finfo.super_version == 0); + assertTrue("free-space manager version: " + finfo.free_version, finfo.free_version == 0); + assertTrue("shared object header version: " + finfo.sohm_version, finfo.sohm_version == 0); H5.H5Pget_sizes(fcpl_id, size); deleteH5file(); } @@ -951,18 +1084,20 @@ public class TestH5P { err.printStackTrace(); fail("H5Pget_sizes: " + err); } - assertTrue("sizeof_addr size: "+size[0], size[0] == 4); - assertTrue("sizeof_size size: "+size[1], size[1] == 8); + assertTrue("sizeof_addr size: " + size[0], size[0] == 4); + assertTrue("sizeof_size size: " + size[1], size[1] == 8); } @Test(expected = NullPointerException.class) - public void testH5Pget_sym_k_null() throws Throwable { + public void testH5Pget_sym_k_null() throws Throwable + { H5.H5Pget_sym_k(fcpl_id, null); } @Test - public void testH5P_sym_k() { - int[] size = {0,0}; + public void testH5P_sym_k() + { + int[] size = {0, 0}; try { H5.H5Pset_sym_k(fcpl_id, 32, 8); @@ -972,13 +1107,13 @@ public class TestH5P { H5.H5Pclose(fcpl_id); /* Get the file's dataset creation property list */ - fcpl_id = H5.H5Fget_create_plist(H5fid); + fcpl_id = H5.H5Fget_create_plist(H5fid); /* Get the file's version information */ H5F_info2_t finfo = H5.H5Fget_info(H5fid); - assertTrue("super block version: "+finfo.super_version, finfo.super_version == 0); - assertTrue("free-space manager version: "+finfo.free_version, finfo.free_version == 0); - assertTrue("shared object header version: "+finfo.sohm_version, finfo.sohm_version == 0); + assertTrue("super block version: " + finfo.super_version, finfo.super_version == 0); + assertTrue("free-space manager version: " + finfo.free_version, finfo.free_version == 0); + assertTrue("shared object header version: " + finfo.sohm_version, finfo.sohm_version == 0); H5.H5Pget_sym_k(fcpl_id, size); deleteH5file(); } @@ -986,17 +1121,19 @@ public class TestH5P { err.printStackTrace(); fail("H5Pget_sym_k: " + err); } - assertTrue("symbol table tree rank: "+size[0], size[0] == 32); - assertTrue("symbol table node size: "+size[1], size[1] == 8); + assertTrue("symbol table tree rank: " + size[0], size[0] == 32); + assertTrue("symbol table node size: " + size[1], size[1] == 8); } @Test(expected = NullPointerException.class) - public void testH5Pget_istore_k_null() throws Throwable { + public void testH5Pget_istore_k_null() throws Throwable + { H5.H5Pget_istore_k(fcpl_id, null); } @Test - public void testH5P_istore_k() { + public void testH5P_istore_k() + { int[] size = {0}; try { @@ -1007,13 +1144,13 @@ public class TestH5P { H5.H5Pclose(fcpl_id); /* Get the file's dataset creation property list */ - fcpl_id = H5.H5Fget_create_plist(H5fid); + fcpl_id = H5.H5Fget_create_plist(H5fid); /* Get the file's version information */ H5F_info2_t finfo = H5.H5Fget_info(H5fid); - assertTrue("super block version: "+finfo.super_version, finfo.super_version == 1); - assertTrue("free-space manager version: "+finfo.free_version, finfo.free_version == 0); - assertTrue("shared object header version: "+finfo.sohm_version, finfo.sohm_version == 0); + assertTrue("super block version: " + finfo.super_version, finfo.super_version == 1); + assertTrue("free-space manager version: " + finfo.free_version, finfo.free_version == 0); + assertTrue("shared object header version: " + finfo.sohm_version, finfo.sohm_version == 0); H5.H5Pget_istore_k(fcpl_id, size); deleteH5file(); } @@ -1021,13 +1158,14 @@ public class TestH5P { err.printStackTrace(); fail("H5Pget_sym_k: " + err); } - assertTrue("chunked storage b-tree 1/2-rank: "+size[0], size[0] == 64); + assertTrue("chunked storage b-tree 1/2-rank: " + size[0], size[0] == 64); } @Test - public void testH5P_obj_track_times() { + public void testH5P_obj_track_times() + { boolean default_ret_val = false; - boolean ret_val = true; + boolean ret_val = true; try { default_ret_val = H5.H5Pget_obj_track_times(ocpl_id); H5.H5Pset_obj_track_times(ocpl_id, false); @@ -1042,7 +1180,8 @@ public class TestH5P { } @Test - public void testH5Pget_char_encoding() { + public void testH5Pget_char_encoding() + { int char_encoding = 0; try { @@ -1065,18 +1204,19 @@ public class TestH5P { } @Test - public void testH5P_fill_time() { + public void testH5P_fill_time() + { int[] fill_time = {0}; try { H5.H5Pget_fill_time(ocpl_id, fill_time); - assertTrue("fill_time: "+fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_IFSET); + assertTrue("fill_time: " + fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_IFSET); H5.H5Pset_fill_time(ocpl_id, HDF5Constants.H5D_FILL_TIME_ALLOC); H5.H5Pget_fill_time(ocpl_id, fill_time); - assertTrue("fill_time: "+fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_ALLOC); + assertTrue("fill_time: " + fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_ALLOC); H5.H5Pset_fill_time(ocpl_id, HDF5Constants.H5D_FILL_TIME_NEVER); H5.H5Pget_fill_time(ocpl_id, fill_time); - assertTrue("fill_time: "+fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_NEVER); + assertTrue("fill_time: " + fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_NEVER); } catch (Throwable err) { err.printStackTrace(); @@ -1085,18 +1225,19 @@ public class TestH5P { } @Test - public void testH5P_alloc_time() { + public void testH5P_alloc_time() + { int[] alloc_time = {0}; try { H5.H5Pget_alloc_time(ocpl_id, alloc_time); - assertTrue("alloc_time: "+alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_LATE); + assertTrue("alloc_time: " + alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_LATE); H5.H5Pset_alloc_time(ocpl_id, HDF5Constants.H5D_ALLOC_TIME_EARLY); H5.H5Pget_alloc_time(ocpl_id, alloc_time); - assertTrue("alloc_time: "+alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_EARLY); + assertTrue("alloc_time: " + alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_EARLY); H5.H5Pset_alloc_time(ocpl_id, HDF5Constants.H5D_ALLOC_TIME_INCR); H5.H5Pget_alloc_time(ocpl_id, alloc_time); - assertTrue("alloc_time: "+alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_INCR); + assertTrue("alloc_time: " + alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_INCR); } catch (Throwable err) { err.printStackTrace(); @@ -1105,21 +1246,24 @@ public class TestH5P { } @Test - public void testH5P_fill_value() { - int[] fill_value = {-1}; + public void testH5P_fill_value() + { + int[] fill_value = {-1}; int[] fill_value_status = {-1}; try { H5.H5Pfill_value_defined(ocpl_id, fill_value_status); - assertTrue("fill_value_status: "+fill_value_status[0], fill_value_status[0] == HDF5Constants.H5D_FILL_VALUE_DEFAULT); + assertTrue("fill_value_status: " + fill_value_status[0], + fill_value_status[0] == HDF5Constants.H5D_FILL_VALUE_DEFAULT); H5.H5Pget_fill_value(ocpl_id, HDF5Constants.H5T_NATIVE_INT, fill_value); - assertTrue("fill_value: "+fill_value[0], fill_value[0] == 0); + assertTrue("fill_value: " + fill_value[0], fill_value[0] == 0); fill_value[0] = 255; H5.H5Pset_fill_value(ocpl_id, HDF5Constants.H5T_NATIVE_INT, fill_value); H5.H5Pget_fill_value(ocpl_id, HDF5Constants.H5T_NATIVE_INT, fill_value); - assertTrue("fill_value: "+fill_value[0], fill_value[0] == 255); + assertTrue("fill_value: " + fill_value[0], fill_value[0] == 255); H5.H5Pfill_value_defined(ocpl_id, fill_value_status); - assertTrue("fill_value_status: "+fill_value_status[0], fill_value_status[0] == HDF5Constants.H5D_FILL_VALUE_USER_DEFINED); + assertTrue("fill_value_status: " + fill_value_status[0], + fill_value_status[0] == HDF5Constants.H5D_FILL_VALUE_USER_DEFINED); } catch (Throwable err) { err.printStackTrace(); @@ -1128,15 +1272,16 @@ public class TestH5P { } @Test - public void testH5P_layout() { + public void testH5P_layout() + { int layout_type = -1; try { layout_type = H5.H5Pget_layout(ocpl_id); - assertTrue("layout: "+layout_type, layout_type == HDF5Constants.H5D_CONTIGUOUS); + assertTrue("layout: " + layout_type, layout_type == HDF5Constants.H5D_CONTIGUOUS); H5.H5Pset_layout(ocpl_id, HDF5Constants.H5D_COMPACT); layout_type = H5.H5Pget_layout(ocpl_id); - assertTrue("layout: "+layout_type, layout_type == HDF5Constants.H5D_COMPACT); + assertTrue("layout: " + layout_type, layout_type == HDF5Constants.H5D_COMPACT); } catch (Throwable err) { err.printStackTrace(); @@ -1145,18 +1290,19 @@ public class TestH5P { } @Test - public void testH5P_chunk() { - long[] chunk_size = {0,0}; - long[] chunk_new_size = {2,3}; - int layout_type = -1; + public void testH5P_chunk() + { + long[] chunk_size = {0, 0}; + long[] chunk_new_size = {2, 3}; + int layout_type = -1; try { H5.H5Pset_chunk(ocpl_id, 2, chunk_new_size); H5.H5Pget_chunk(ocpl_id, 2, chunk_size); - assertTrue("chunk: "+chunk_size[0], chunk_size[0] == chunk_new_size[0]); - assertTrue("chunk: "+chunk_size[1], chunk_size[1] == chunk_new_size[1]); + assertTrue("chunk: " + chunk_size[0], chunk_size[0] == chunk_new_size[0]); + assertTrue("chunk: " + chunk_size[1], chunk_size[1] == chunk_new_size[1]); layout_type = H5.H5Pget_layout(ocpl_id); - assertTrue("layout: "+layout_type, layout_type == HDF5Constants.H5D_CHUNKED); + assertTrue("layout: " + layout_type, layout_type == HDF5Constants.H5D_CHUNKED); } catch (Throwable err) { err.printStackTrace(); @@ -1165,20 +1311,22 @@ public class TestH5P { } @Test - public void testH5P_file_space_strategy() { - long[] threshold = {0}; + public void testH5P_file_space_strategy() + { + long[] threshold = {0}; boolean[] persist = {false}; - int strategy = 0; + int strategy = 0; try { strategy = H5.H5Pget_file_space_strategy(fcpl_id, persist, threshold); - assertTrue("strategy(default): "+strategy, strategy == HDF5Constants.H5F_FSPACE_STRATEGY_FSM_AGGR); - assertTrue("persist(default): "+persist[0], persist[0] == false); - assertTrue("threshold(default): "+threshold[0], threshold[0] == 1); + assertTrue("strategy(default): " + strategy, + strategy == HDF5Constants.H5F_FSPACE_STRATEGY_FSM_AGGR); + assertTrue("persist(default): " + persist[0], persist[0] == false); + assertTrue("threshold(default): " + threshold[0], threshold[0] == 1); H5.H5Pset_file_space_strategy(fcpl_id, HDF5Constants.H5F_FSPACE_STRATEGY_PAGE, true, 1); strategy = H5.H5Pget_file_space_strategy(fcpl_id, persist, threshold); - assertTrue("strategy: "+strategy, strategy == HDF5Constants.H5F_FSPACE_STRATEGY_PAGE); - assertTrue("persist: "+persist[0], persist[0] == true); - assertTrue("threshold: "+threshold[0], threshold[0] == 1); + assertTrue("strategy: " + strategy, strategy == HDF5Constants.H5F_FSPACE_STRATEGY_PAGE); + assertTrue("persist: " + persist[0], persist[0] == true); + assertTrue("threshold: " + threshold[0], threshold[0] == 1); } catch (Throwable err) { err.printStackTrace(); @@ -1187,23 +1335,25 @@ public class TestH5P { } @Test - public void testH5P_file_space_page_size() { + public void testH5P_file_space_page_size() + { long page_size = 0; try { page_size = H5.H5Pget_file_space_page_size(fcpl_id); - assertTrue("page_size(default): "+page_size, page_size == 4096); + assertTrue("page_size(default): " + page_size, page_size == 4096); H5.H5Pset_file_space_page_size(fcpl_id, 512); page_size = H5.H5Pget_file_space_page_size(fcpl_id); - assertTrue("page_size: "+page_size, page_size == 512); + assertTrue("page_size: " + page_size, page_size == 512); } catch (Throwable err) { err.printStackTrace(); fail("testH5P_file_space_page_size: " + err); } - } + } @Test - public void testH5Pset_efile_prefix() { + public void testH5Pset_efile_prefix() + { String prefix = "tmp"; try { H5.H5Pset_efile_prefix(lapl_id, prefix); @@ -1215,14 +1365,16 @@ public class TestH5P { } @Test(expected = NullPointerException.class) - public void testH5Pset_efile_prefix_null() throws Throwable{ + public void testH5Pset_efile_prefix_null() throws Throwable + { H5.H5Pset_efile_prefix(lapl_id, null); } @Test - public void testH5Pget_efile_prefix() { + public void testH5Pget_efile_prefix() + { String prefix = "tmp"; - String pre = ""; + String pre = ""; try { H5.H5Pset_efile_prefix(lapl_id, prefix); @@ -1236,15 +1388,17 @@ public class TestH5P { } @Ignore - public void testH5P_chunk_opts() { + public void testH5P_chunk_opts() + { int chunk_opts = -1; try { chunk_opts = H5.H5Pget_chunk_opts(ocpl_id); - assertTrue("chunk_opts: "+chunk_opts, chunk_opts == 0); + assertTrue("chunk_opts: " + chunk_opts, chunk_opts == 0); H5.H5Pset_chunk_opts(ocpl_id, HDF5Constants.H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS); chunk_opts = H5.H5Pget_chunk_opts(ocpl_id); - assertTrue("chunk_opts: "+chunk_opts, chunk_opts == HDF5Constants.H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS); + assertTrue("chunk_opts: " + chunk_opts, + chunk_opts == HDF5Constants.H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS); } catch (Throwable err) { err.printStackTrace(); diff --git a/java/test/TestH5PData.java b/java/test/TestH5PData.java index 8b04629..49a0b7d 100644 --- a/java/test/TestH5PData.java +++ b/java/test/TestH5PData.java @@ -31,44 +31,61 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5PData { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "testPD.h5"; - private static final int DIM_X = 12; - private static final int DIM_Y = 18; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - long plist_id = HDF5Constants.H5I_INVALID_HID; - long[] H5dims = { DIM_X, DIM_Y }; - double windchillF[][] = - {{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0}, - {34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0, -41.0, -47.0, -53.0, -59.0, -66.0, -72.0}, - {32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0, -45.0, -51.0, -58.0, -64.0, -71.0, -77.0}, - {30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0, -48.0, -55.0, -61.0, -68.0, -74.0, -81.0}, - {29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0, -51.0, -58.0, -64.0, -71.0, -78.0, -84.0}, - {28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0, -53.0, -60.0, -67.0, -73.0, -80.0, -87.0}, - {28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0, -55.0, -62.0, -69.0, -76.0, -82.0, -89.0}, - {27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0, -57.0, -64.0, -71.0, -78.0, -84.0, -91.0}, - {26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0, -58.0, -65.0, -72.0, -79.0, -86.0, -93.0}, - {26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0, -60.0, -67.0, -74.0, -81.0, -88.0, -95.0}, - {25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0, -61.0, -68.0, -75.0, -82.0, -89.0, -97.0}, - {25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0, -62.0, -69.0, -76.0, -84.0, -91.0, -98.0} - }; - - private final void _deleteFile(String filename) { + private static final int DIM_X = 12; + private static final int DIM_Y = 18; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + long plist_id = HDF5Constants.H5I_INVALID_HID; + long[] H5dims = {DIM_X, DIM_Y}; + double windchillF[][] = {{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, + -40.0, -46.0, -52.0, -57.0, -63.0}, + {34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0, + -41.0, -47.0, -53.0, -59.0, -66.0, -72.0}, + {32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0, + -45.0, -51.0, -58.0, -64.0, -71.0, -77.0}, + {30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0, + -48.0, -55.0, -61.0, -68.0, -74.0, -81.0}, + {29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0, + -51.0, -58.0, -64.0, -71.0, -78.0, -84.0}, + {28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0, + -53.0, -60.0, -67.0, -73.0, -80.0, -87.0}, + {28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0, + -55.0, -62.0, -69.0, -76.0, -82.0, -89.0}, + {27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0, + -57.0, -64.0, -71.0, -78.0, -84.0, -91.0}, + {26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0, + -58.0, -65.0, -72.0, -79.0, -86.0, -93.0}, + {26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0, + -60.0, -67.0, -74.0, -81.0, -88.0, -95.0}, + {25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0, + -61.0, -68.0, -75.0, -82.0, -89.0, -97.0}, + {25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0, + -62.0, -69.0, -76.0, -84.0, -91.0, -98.0}}; + + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } - private final long _createFloatDataset(long fid, long dsid, String name, long dapl) { + private final long _createFloatDataset(long fid, long dsid, String name, long dapl) + { long did = HDF5Constants.H5I_INVALID_HID; try { - did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_FLOAT, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_FLOAT, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -80,49 +97,67 @@ public class TestH5PData { } @Before - public void createH5file() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - H5dsid = H5.H5Screate_simple(2, H5dims, null); - H5did = _createFloatDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + H5dsid = H5.H5Screate_simple(2, H5dims, null); + H5did = _createFloatDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); } catch (Throwable err) { err.printStackTrace(); fail("TestH5PData.createH5file: " + err); } - assertTrue("TestH5PData.createH5file: H5.H5Fcreate: ",H5fid > 0); - assertTrue("TestH5PData.createH5file: H5.H5Screate_simple: ",H5dsid > 0); - assertTrue("TestH5PData.createH5file: _createFloatDataset: ",H5did > 0); + assertTrue("TestH5PData.createH5file: H5.H5Fcreate: ", H5fid > 0); + assertTrue("TestH5PData.createH5file: H5.H5Screate_simple: ", H5dsid > 0); + assertTrue("TestH5PData.createH5file: _createFloatDataset: ", H5did > 0); assertTrue(plist_id > 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } _deleteFile(H5_FILE); if (plist_id > 0) - try {H5.H5Pclose(plist_id);} catch (Exception ex) {} + try { + H5.H5Pclose(plist_id); + } + catch (Exception ex) { + } System.out.println(); } @Test - public void testH5Pdata_transform() { - String f_to_c = "(5/9.0)*(x-32)"; + public void testH5Pdata_transform() + { + String f_to_c = "(5/9.0)*(x-32)"; double windchillFread[][] = new double[DIM_X][DIM_Y]; double windchillC; NumberFormat formatter = new DecimalFormat("#0.000"); @@ -130,38 +165,40 @@ public class TestH5PData { try { H5.H5Pset_data_transform(plist_id, f_to_c); H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - plist_id, windchillF); + plist_id, windchillF); H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, windchillFread); + HDF5Constants.H5P_DEFAULT, windchillFread); } catch (Throwable err) { err.printStackTrace(); fail("H5Pdata_transform: " + err); } - for(int row = 0; row < DIM_X; row++) - for(int col = 0; col < DIM_Y; col++) { - windchillC = (5/9.0)*(windchillF[row][col]-32); - String Cstr = formatter.format(windchillC); + for (int row = 0; row < DIM_X; row++) + for (int col = 0; col < DIM_Y; col++) { + windchillC = (5 / 9.0) * (windchillF[row][col] - 32); + String Cstr = formatter.format(windchillC); String Fread = formatter.format(windchillFread[row][col]); - assertTrue("H5Pdata_transform: <"+row+","+col+">"+Fread+"="+Cstr, Fread.compareTo(Cstr)==0); + assertTrue("H5Pdata_transform: <" + row + "," + col + ">" + Fread + "=" + Cstr, + Fread.compareTo(Cstr) == 0); } } @Test - public void testH5P_buffer() { + public void testH5P_buffer() + { long default_size = 0; - long size = 0; + long size = 0; try { default_size = H5.H5Pget_buffer_size(plist_id); - H5.H5Pset_buffer_size(plist_id, DIM_X*DIM_Y); + H5.H5Pset_buffer_size(plist_id, DIM_X * DIM_Y); size = H5.H5Pget_buffer_size(plist_id); } catch (Throwable err) { err.printStackTrace(); fail("H5P_buffer fail: " + err); } - assertTrue("H5P_buffer default: "+default_size, default_size==1024*1024); - assertTrue("H5P_buffer size: "+size, size==DIM_X*DIM_Y); + assertTrue("H5P_buffer default: " + default_size, default_size == 1024 * 1024); + assertTrue("H5P_buffer size: " + size, size == DIM_X * DIM_Y); } } diff --git a/java/test/TestH5PL.java b/java/test/TestH5PL.java index d44cc0b..f6440cd 100644 --- a/java/test/TestH5PL.java +++ b/java/test/TestH5PL.java @@ -14,6 +14,7 @@ package test; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; + import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5LibraryException; @@ -26,39 +27,45 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5PL { - @Rule public TestName testname = new TestName(); - private static String FILENAME = "h5_dlopenChunk.h5"; - private static String DATASETNAME = "DS1"; - private static final int DIM_X = 6; - private static final int DIM_Y = 8; - private static final int CHUNK_X = 4; - private static final int CHUNK_Y = 4; - private static final int RANK = 2; - private static final int NDIMS = 2; + @Rule + public TestName testname = new TestName(); + private static String FILENAME = "h5_dlopenChunk.h5"; + private static String DATASETNAME = "DS1"; + private static final int DIM_X = 6; + private static final int DIM_Y = 8; + private static final int CHUNK_X = 4; + private static final int CHUNK_Y = 4; + private static final int RANK = 2; + private static final int NDIMS = 2; private static final int H5Z_FILTER_DYNLIB4 = 260; @Before - public void checkOpenIDs() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void checkOpenIDs() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @After - public void nextTestName() { + public void nextTestName() + { System.out.println(); } @Test - public void TestH5PLplugins() { + public void TestH5PLplugins() + { try { int plugin_flags = H5.H5PLget_loading_state(); - assertTrue("H5.H5PLget_loading_state: "+plugin_flags, plugin_flags == HDF5Constants.H5PL_ALL_PLUGIN); + assertTrue("H5.H5PLget_loading_state: " + plugin_flags, + plugin_flags == HDF5Constants.H5PL_ALL_PLUGIN); int new_setting = plugin_flags & ~HDF5Constants.H5PL_FILTER_PLUGIN; - H5.H5PLset_loading_state (new_setting); + H5.H5PLset_loading_state(new_setting); int changed_flags = H5.H5PLget_loading_state(); - assertTrue("H5.H5PLget_loading_state: "+changed_flags, changed_flags == new_setting); - H5.H5PLset_loading_state (plugin_flags); + assertTrue("H5.H5PLget_loading_state: " + changed_flags, changed_flags == new_setting); + H5.H5PLset_loading_state(plugin_flags); changed_flags = H5.H5PLget_loading_state(); - assertTrue("H5.H5PLget_loading_state: "+changed_flags, changed_flags == HDF5Constants.H5PL_ALL_PLUGIN); + assertTrue("H5.H5PLget_loading_state: " + changed_flags, + changed_flags == HDF5Constants.H5PL_ALL_PLUGIN); } catch (Throwable err) { err.printStackTrace(); @@ -67,15 +74,16 @@ public class TestH5PL { } @Test - public void TestH5PLpaths() { + public void TestH5PLpaths() + { try { // Get the original number of paths int nStartPaths = H5.H5PLsize(); - int nPaths; /* # paths from H5PLSize() */ - int nTruePaths = nStartPaths; /* What the # paths should be */ - int index; /* Path table index */ - String path; /* Path from H5PLget() */ + int nPaths; /* # paths from H5PLSize() */ + int nTruePaths = nStartPaths; /* What the # paths should be */ + int index; /* Path table index */ + String path; /* Path from H5PLget() */ // APPEND a path and ensure it was added correctly String pathAppend = "path_append"; @@ -86,8 +94,9 @@ public class TestH5PL { assertTrue("# paths should be " + nTruePaths + " but was " + nPaths, nTruePaths == nPaths); index = nTruePaths - 1; - path = H5.H5PLget(index); - assertTrue("Path should be " + pathAppend + " but was " + path, path.compareToIgnoreCase(pathAppend) == 0); + path = H5.H5PLget(index); + assertTrue("Path should be " + pathAppend + " but was " + path, + path.compareToIgnoreCase(pathAppend) == 0); // PREPEND a path and ensure it was added correctly String pathPrepend = "path_prepend"; @@ -98,13 +107,14 @@ public class TestH5PL { assertTrue("# paths should be " + nTruePaths + " but was " + nPaths, nTruePaths == nPaths); index = 0; - path = H5.H5PLget(index); - assertTrue("Path should be " + pathPrepend + " but was " + path, path.compareToIgnoreCase(pathPrepend) == 0); + path = H5.H5PLget(index); + assertTrue("Path should be " + pathPrepend + " but was " + path, + path.compareToIgnoreCase(pathPrepend) == 0); // INSERT a path and ensure it was added correctly // Inserting at the index == # of start paths ensures we're in the middle String pathInsert = "path_insert"; - index = nStartPaths; + index = nStartPaths; H5.H5PLinsert(pathInsert, index); nPaths = H5.H5PLsize(); @@ -112,22 +122,24 @@ public class TestH5PL { assertTrue("# paths should be " + nTruePaths + " but was " + nPaths, nTruePaths == nPaths); path = H5.H5PLget(index); - assertTrue("Path should be " + pathInsert + " but was " + path, path.compareToIgnoreCase(pathInsert) == 0); + assertTrue("Path should be " + pathInsert + " but was " + path, + path.compareToIgnoreCase(pathInsert) == 0); // REPLACE the path we just added and ensure it updated correctly String pathReplace = "path_replace"; - index = nStartPaths; + index = nStartPaths; H5.H5PLreplace(pathReplace, index); nPaths = H5.H5PLsize(); assertTrue("# paths should be " + nTruePaths + " but was " + nPaths, nTruePaths == nPaths); path = H5.H5PLget(index); - assertTrue("Path should be " + pathReplace + " but was " + path, path.compareToIgnoreCase(pathReplace) == 0); + assertTrue("Path should be " + pathReplace + " but was " + path, + path.compareToIgnoreCase(pathReplace) == 0); // REMOVE the path we just replaced and check that the table was compacted // The (index+1) path should move down to fill the space when the path is removed. - index = nStartPaths; + index = nStartPaths; String pathRemove = H5.H5PLget(index + 1); H5.H5PLremove(index); @@ -136,7 +148,8 @@ public class TestH5PL { assertTrue("# paths should be " + nTruePaths + " but was " + nPaths, nTruePaths == nPaths); path = H5.H5PLget(index); - assertTrue("Path should be " + pathRemove + " but was " + path, path.compareToIgnoreCase(pathRemove) == 0); + assertTrue("Path should be " + pathRemove + " but was " + path, + path.compareToIgnoreCase(pathRemove) == 0); } catch (Throwable err) { err.printStackTrace(); @@ -145,22 +158,23 @@ public class TestH5PL { } @Ignore - public void TestH5PLdlopen() { - long file_id = HDF5Constants.H5I_INVALID_HID; + public void TestH5PLdlopen() + { + long file_id = HDF5Constants.H5I_INVALID_HID; long filespace_id = HDF5Constants.H5I_INVALID_HID; - long dataset_id = HDF5Constants.H5I_INVALID_HID; - long fapl_id = HDF5Constants.H5I_INVALID_HID; - long dcpl_id = HDF5Constants.H5I_INVALID_HID; + long dataset_id = HDF5Constants.H5I_INVALID_HID; + long fapl_id = HDF5Constants.H5I_INVALID_HID; + long dcpl_id = HDF5Constants.H5I_INVALID_HID; try { - int[] cd_values = {9, 0, 0, 0}; - int[] libversion = {0, 0, 0}; - long[] dims = { DIM_X, DIM_Y }; - long[] chunk_dims = { CHUNK_X, CHUNK_Y }; - int[][] dset_data = new int[DIM_X][DIM_Y]; - int[] mdc_nelmts = {0}; + int[] cd_values = {9, 0, 0, 0}; + int[] libversion = {0, 0, 0}; + long[] dims = {DIM_X, DIM_Y}; + long[] chunk_dims = {CHUNK_X, CHUNK_Y}; + int[][] dset_data = new int[DIM_X][DIM_Y]; + int[] mdc_nelmts = {0}; long[] rdcc_nelmts = {0}; long[] rdcc_nbytes = {0}; - double[] rdcc_w0 = {0}; + double[] rdcc_w0 = {0}; // Initialize data to "1", to make it easier to see the selections. for (int indx = 0; indx < DIM_X; indx++) @@ -170,7 +184,7 @@ public class TestH5PL { // Create a new file using default properties. try { file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); + HDF5Constants.H5P_DEFAULT); } catch (Exception e) { e.printStackTrace(); @@ -212,7 +226,8 @@ public class TestH5PL { cd_values[2] = libversion[1]; cd_values[3] = libversion[2]; if (dcpl_id >= 0) - H5.H5Pset_filter(dcpl_id, H5Z_FILTER_DYNLIB4, HDF5Constants.H5Z_FLAG_MANDATORY, 4, cd_values); + H5.H5Pset_filter(dcpl_id, H5Z_FILTER_DYNLIB4, HDF5Constants.H5Z_FLAG_MANDATORY, 4, + cd_values); } catch (Exception e) { e.printStackTrace(); @@ -222,8 +237,9 @@ public class TestH5PL { // Create the chunked dataset. try { if ((file_id >= 0) && (filespace_id >= 0) && (dcpl_id >= 0)) - dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_NATIVE_INT, filespace_id, - HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT); + dataset_id = + H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_NATIVE_INT, filespace_id, + HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT); } catch (Exception e) { e.printStackTrace(); @@ -232,8 +248,8 @@ public class TestH5PL { try { if (dataset_id >= 0) - H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5S_ALL, dset_data); + H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, + HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, dset_data); } catch (Exception e) { e.printStackTrace(); @@ -247,13 +263,29 @@ public class TestH5PL { finally { // End access to the dataset and release resources used by it. if (dcpl_id >= 0) - try {H5.H5Pclose_class(dcpl_id);} catch (Throwable err) {} + try { + H5.H5Pclose_class(dcpl_id); + } + catch (Throwable err) { + } if (dataset_id >= 0) - try {H5.H5Dclose(dataset_id);} catch (Throwable err) {} + try { + H5.H5Dclose(dataset_id); + } + catch (Throwable err) { + } if (filespace_id >= 0) - try {H5.H5Sclose(filespace_id);} catch (Throwable err) {} + try { + H5.H5Sclose(filespace_id); + } + catch (Throwable err) { + } if (file_id >= 0) - try {H5.H5Fclose(file_id);} catch (Throwable err) {} + try { + H5.H5Fclose(file_id); + } + catch (Throwable err) { + } } } } diff --git a/java/test/TestH5Pfapl.java b/java/test/TestH5Pfapl.java index f6be24f..307ee74 100644 --- a/java/test/TestH5Pfapl.java +++ b/java/test/TestH5Pfapl.java @@ -35,104 +35,140 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Pfapl { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); - private static final String H5_FILE = "testPf.h5"; - private static final String H5_LOG_FILE = "testPf.log"; + private static final String H5_FILE = "testPf.h5"; + private static final String H5_LOG_FILE = "testPf.log"; private static final String H5_FAMILY_FILE = "testPf%05d"; - private static final String H5_MULTI_FILE = "testPfmulti"; - private static char MULTI_LETTERS[] = {'X','s','b','r','g','l','o'}; - private static final int DIM_X = 4; - private static final int DIM_Y = 6; - private static final int DIMF_X = 12; - private static final int DIMF_Y = 18; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - long H5Fdsid = HDF5Constants.H5I_INVALID_HID; - long H5Fdid = HDF5Constants.H5I_INVALID_HID; - long[] H5dims = { DIM_X, DIM_Y }; - long fapl_id = HDF5Constants.H5I_INVALID_HID; - long plapl_id = HDF5Constants.H5I_INVALID_HID; - long dapl_id = HDF5Constants.H5I_INVALID_HID; - long plist_id = HDF5Constants.H5I_INVALID_HID; - long btplist_id = HDF5Constants.H5I_INVALID_HID; - long[] H5Fdims = { DIMF_X, DIMF_Y }; - double windchillF[][] = - {{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0}, - {34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0, -41.0, -47.0, -53.0, -59.0, -66.0, -72.0}, - {32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0, -45.0, -51.0, -58.0, -64.0, -71.0, -77.0}, - {30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0, -48.0, -55.0, -61.0, -68.0, -74.0, -81.0}, - {29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0, -51.0, -58.0, -64.0, -71.0, -78.0, -84.0}, - {28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0, -53.0, -60.0, -67.0, -73.0, -80.0, -87.0}, - {28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0, -55.0, -62.0, -69.0, -76.0, -82.0, -89.0}, - {27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0, -57.0, -64.0, -71.0, -78.0, -84.0, -91.0}, - {26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0, -58.0, -65.0, -72.0, -79.0, -86.0, -93.0}, - {26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0, -60.0, -67.0, -74.0, -81.0, -88.0, -95.0}, - {25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0, -61.0, -68.0, -75.0, -82.0, -89.0, -97.0}, - {25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0, -62.0, -69.0, -76.0, -84.0, -91.0, -98.0} - }; - - private final void _deleteFile(String filename) { + private static final String H5_MULTI_FILE = "testPfmulti"; + private static char MULTI_LETTERS[] = {'X', 's', 'b', 'r', 'g', 'l', 'o'}; + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + private static final int DIMF_X = 12; + private static final int DIMF_Y = 18; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + long H5Fdsid = HDF5Constants.H5I_INVALID_HID; + long H5Fdid = HDF5Constants.H5I_INVALID_HID; + long[] H5dims = {DIM_X, DIM_Y}; + long fapl_id = HDF5Constants.H5I_INVALID_HID; + long plapl_id = HDF5Constants.H5I_INVALID_HID; + long dapl_id = HDF5Constants.H5I_INVALID_HID; + long plist_id = HDF5Constants.H5I_INVALID_HID; + long btplist_id = HDF5Constants.H5I_INVALID_HID; + long[] H5Fdims = {DIMF_X, DIMF_Y}; + double windchillF[][] = {{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, + -40.0, -46.0, -52.0, -57.0, -63.0}, + {34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0, + -41.0, -47.0, -53.0, -59.0, -66.0, -72.0}, + {32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0, + -45.0, -51.0, -58.0, -64.0, -71.0, -77.0}, + {30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0, + -48.0, -55.0, -61.0, -68.0, -74.0, -81.0}, + {29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0, + -51.0, -58.0, -64.0, -71.0, -78.0, -84.0}, + {28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0, + -53.0, -60.0, -67.0, -73.0, -80.0, -87.0}, + {28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0, + -55.0, -62.0, -69.0, -76.0, -82.0, -89.0}, + {27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0, + -57.0, -64.0, -71.0, -78.0, -84.0, -91.0}, + {26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0, + -58.0, -65.0, -72.0, -79.0, -86.0, -93.0}, + {26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0, + -60.0, -67.0, -74.0, -81.0, -88.0, -95.0}, + {25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0, + -61.0, -68.0, -75.0, -82.0, -89.0, -97.0}, + {25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0, + -62.0, -69.0, -76.0, -84.0, -91.0, -98.0}}; + + private final void _deleteFile(String filename) + { File file = null; try { file = new File(filename); } - catch (Throwable err) {} + catch (Throwable err) { + } if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } - private final void _deleteLogFile() { + private final void _deleteLogFile() + { File file = null; try { file = new File(H5_LOG_FILE); } - catch (Throwable err) {} + catch (Throwable err) { + } if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } - private final void _deleteFamilyFile() { + private final void _deleteFamilyFile() + { File file = null; - for(int indx = 0; ;indx++) { + for (int indx = 0;; indx++) { java.text.DecimalFormat myFormat = new java.text.DecimalFormat("00000"); try { - file = new File("test"+myFormat.format(Integer.valueOf(indx))+".h5"); + file = new File("test" + myFormat.format(Integer.valueOf(indx)) + ".h5"); + } + catch (Throwable err) { } - catch (Throwable err) {} if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } else return; } } - private final void _deleteMultiFile() { + private final void _deleteMultiFile() + { File file = null; - for(int indx = 1;indx<7;indx++) { + for (int indx = 1; indx < 7; indx++) { try { - file = new File(H5_MULTI_FILE+"-"+MULTI_LETTERS[indx]+".h5"); + file = new File(H5_MULTI_FILE + "-" + MULTI_LETTERS[indx] + ".h5"); + } + catch (Throwable err) { } - catch (Throwable err) {} if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } } - private final long _createDataset(long fid, long dsid, String name, long dapl) { + private final long _createDataset(long fid, long dsid, String name, long dapl) + { long did = HDF5Constants.H5I_INVALID_HID; try { - did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -143,11 +179,13 @@ public class TestH5Pfapl { return did; } - private final void _createFloatDataset() { + private final void _createFloatDataset() + { try { H5Fdsid = H5.H5Screate_simple(2, H5Fdims, null); - H5Fdid = H5.H5Dcreate(H5fid, "dsfloat", HDF5Constants.H5T_NATIVE_FLOAT, H5Fdsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5Fdid = + H5.H5Dcreate(H5fid, "dsfloat", HDF5Constants.H5T_NATIVE_FLOAT, H5Fdsid, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -163,7 +201,8 @@ public class TestH5Pfapl { } } - private final void _createH5multiFileDS() { + private final void _createH5multiFileDS() + { try { H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); } @@ -181,12 +220,12 @@ public class TestH5Pfapl { } } - private final void _createH5File(long fapl) { + private final void _createH5File(long fapl) + { try { - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, fapl); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, fapl); H5dsid = H5.H5Screate_simple(2, H5dims, null); - H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); + H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -204,12 +243,13 @@ public class TestH5Pfapl { } } - private final void _createH5familyFile(long fapl) { + private final void _createH5familyFile(long fapl) + { try { - H5fid = H5.H5Fcreate(H5_FAMILY_FILE+".h5", HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, fapl); + H5fid = H5.H5Fcreate(H5_FAMILY_FILE + ".h5", HDF5Constants.H5F_ACC_TRUNC, + HDF5Constants.H5P_DEFAULT, fapl); H5dsid = H5.H5Screate_simple(2, H5dims, null); - H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); + H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); @@ -227,10 +267,10 @@ public class TestH5Pfapl { } } - private final void _createH5multiFile(long fapl) { + private final void _createH5multiFile(long fapl) + { try { - H5fid = H5.H5Fcreate(H5_MULTI_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, fapl); + H5fid = H5.H5Fcreate(H5_MULTI_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, fapl); H5dsid = H5.H5Screate_simple(2, H5dims, null); } catch (Throwable err) { @@ -248,22 +288,16 @@ public class TestH5Pfapl { } } - public void deleteH5file() { - _deleteFile(H5_FILE); - } + public void deleteH5file() { _deleteFile(H5_FILE); } - public void deleteH5familyfile() { - _deleteFamilyFile(); - } + public void deleteH5familyfile() { _deleteFamilyFile(); } - public void deleteH5multifile() { - _deleteMultiFile(); - } + public void deleteH5multifile() { _deleteMultiFile(); } @Before - public void createFileAccess() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createFileAccess() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { @@ -283,9 +317,9 @@ public class TestH5Pfapl { } assertTrue(plapl_id > 0); try { - plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); + plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); btplist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); - dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); + dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); } catch (Throwable err) { err.printStackTrace(); @@ -297,34 +331,76 @@ public class TestH5Pfapl { } @After - public void deleteFileAccess() throws HDF5LibraryException { + public void deleteFileAccess() throws HDF5LibraryException + { if (fapl_id > 0) - try {H5.H5Pclose(fapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(fapl_id); + } + catch (Exception ex) { + } if (plapl_id > 0) - try {H5.H5Pclose(plapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(plapl_id); + } + catch (Exception ex) { + } if (dapl_id > 0) - try {H5.H5Pclose(dapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(dapl_id); + } + catch (Exception ex) { + } if (plist_id > 0) - try {H5.H5Pclose(plist_id);} catch (Exception ex) {} + try { + H5.H5Pclose(plist_id); + } + catch (Exception ex) { + } if (btplist_id > 0) - try {H5.H5Pclose(btplist_id);} catch (Exception ex) {} + try { + H5.H5Pclose(btplist_id); + } + catch (Exception ex) { + } if (H5Fdsid > 0) - try {H5.H5Sclose(H5Fdsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5Fdsid); + } + catch (Exception ex) { + } if (H5Fdid > 0) - try {H5.H5Dclose(H5Fdid);} catch (Exception ex) {} + try { + H5.H5Dclose(H5Fdid); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } System.out.println(); } @Test - public void testH5Pget_libver_bounds() { - int ret_val = -1; + public void testH5Pget_libver_bounds() + { + int ret_val = -1; int[] libver = new int[2]; try { @@ -342,11 +418,12 @@ public class TestH5Pfapl { } @Test - public void testH5Pset_libver_bounds() { + public void testH5Pset_libver_bounds() + { - int ret_val = -1; - int low = HDF5Constants.H5F_LIBVER_EARLIEST; - int high = HDF5Constants.H5F_LIBVER_LATEST; + int ret_val = -1; + int low = HDF5Constants.H5F_LIBVER_EARLIEST; + int high = HDF5Constants.H5F_LIBVER_LATEST; int[] libver = new int[2]; try { @@ -365,15 +442,17 @@ public class TestH5Pfapl { } @Test(expected = HDF5LibraryException.class) - public void testH5Pset_elink_fapl_NegativeID() throws Throwable { - H5.H5Pset_elink_fapl(-1, fapl_id ); + public void testH5Pset_elink_fapl_NegativeID() throws Throwable + { + H5.H5Pset_elink_fapl(-1, fapl_id); } @Test - public void testH5Pset_elink_fapl() { + public void testH5Pset_elink_fapl() + { int ret_val = -1; try { - ret_val = H5.H5Pset_elink_fapl(plapl_id, fapl_id ); + ret_val = H5.H5Pset_elink_fapl(plapl_id, fapl_id); } catch (Throwable err) { err.printStackTrace(); @@ -383,12 +462,13 @@ public class TestH5Pfapl { } @Test - public void testH5Pget_elink_fapl() { + public void testH5Pget_elink_fapl() + { long ret_val_id = HDF5Constants.H5I_INVALID_HID; try { ret_val_id = H5.H5Pget_elink_fapl(plapl_id); assertTrue("H5Pget_elink_fapl", ret_val_id >= 0); - assertEquals(HDF5Constants.H5P_DEFAULT, ret_val_id ); + assertEquals(HDF5Constants.H5P_DEFAULT, ret_val_id); } catch (Throwable err) { err.printStackTrace(); @@ -396,15 +476,20 @@ public class TestH5Pfapl { } finally { if (ret_val_id > 0) - try {H5.H5Pclose(ret_val_id);} catch (Exception ex) {} + try { + H5.H5Pclose(ret_val_id); + } + catch (Exception ex) { + } } } @Test - public void testH5P_elink_fapl() { + public void testH5P_elink_fapl() + { long ret_val_id = HDF5Constants.H5I_INVALID_HID; try { - H5.H5Pset_elink_fapl(plapl_id, fapl_id ); + H5.H5Pset_elink_fapl(plapl_id, fapl_id); ret_val_id = H5.H5Pget_elink_fapl(plapl_id); assertTrue("H5P_elink_fapl", ret_val_id >= 0); } @@ -414,16 +499,21 @@ public class TestH5Pfapl { } finally { if (ret_val_id > 0) - try {H5.H5Pclose(ret_val_id);} catch (Exception ex) {} + try { + H5.H5Pclose(ret_val_id); + } + catch (Exception ex) { + } } } @Test - public void testH5P_elink_file_cache_size() { + public void testH5P_elink_file_cache_size() + { long elink_fapl_id = HDF5Constants.H5I_INVALID_HID; - int efc_size = 0; + int efc_size = 0; try { - H5.H5Pset_elink_fapl(plapl_id, fapl_id ); + H5.H5Pset_elink_fapl(plapl_id, fapl_id); elink_fapl_id = H5.H5Pget_elink_fapl(plapl_id); assertTrue("H5P_elink_file_cache_size", elink_fapl_id >= 0); try { @@ -449,15 +539,20 @@ public class TestH5Pfapl { } finally { if (elink_fapl_id > 0) - try {H5.H5Pclose(elink_fapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(elink_fapl_id); + } + catch (Exception ex) { + } } } @Test - public void testH5P_btree_ratios() { - double[] left = {0.1}; + public void testH5P_btree_ratios() + { + double[] left = {0.1}; double[] middle = {0.5}; - double[] right = {0.7}; + double[] right = {0.7}; try { H5.H5Pset_btree_ratios(plist_id, left[0], middle[0], right[0]); H5.H5Pget_btree_ratios(plist_id, left, middle, right); @@ -470,7 +565,8 @@ public class TestH5Pfapl { } @Test - public void testH5P_edc_check() { + public void testH5P_edc_check() + { int ret_val_id = -1; try { ret_val_id = H5.H5Pget_edc_check(plist_id); @@ -486,7 +582,8 @@ public class TestH5Pfapl { } @Test - public void testH5P_fclose_degree() { + public void testH5P_fclose_degree() + { int ret_val_id = -1; try { ret_val_id = H5.H5Pget_fclose_degree(fapl_id); @@ -517,8 +614,9 @@ public class TestH5Pfapl { } @Test - public void testH5P_alignment() { - long[] align = {0,0}; + public void testH5P_alignment() + { + long[] align = {0, 0}; try { H5.H5Pget_alignment(fapl_id, align); assertTrue("H5P_alignment threshold default", align[0] == 1); @@ -543,7 +641,8 @@ public class TestH5Pfapl { } @Test - public void testH5P_meta_block_size() { + public void testH5P_meta_block_size() + { long meta_size = 0; try { meta_size = H5.H5Pget_meta_block_size(fapl_id); @@ -566,7 +665,8 @@ public class TestH5Pfapl { } @Test - public void testH5P_small_data_block_size() { + public void testH5P_small_data_block_size() + { long align = 0; try { align = H5.H5Pget_small_data_block_size(fapl_id); @@ -589,7 +689,8 @@ public class TestH5Pfapl { } @Test - public void testH5P_hyper_vector_size() { + public void testH5P_hyper_vector_size() + { long[] align = {0}; try { H5.H5Pget_hyper_vector_size(plist_id, align); @@ -612,14 +713,15 @@ public class TestH5Pfapl { } @Test - public void testH5P_cache() { + public void testH5P_cache() + { long[] rdcc_nelmts = {0}; long[] rdcc_nbytes = {0}; - double[] rdcc_w0 = {0}; + double[] rdcc_w0 = {0}; try { H5.H5Pget_cache(fapl_id, null, rdcc_nelmts, rdcc_nbytes, rdcc_w0); assertTrue("H5P_cache default", rdcc_nelmts[0] == 521); - assertTrue("H5P_cache default", rdcc_nbytes[0] == (1024*1024)); + assertTrue("H5P_cache default", rdcc_nbytes[0] == (1024 * 1024)); assertTrue("H5P_cache default", rdcc_w0[0] == 0.75); } catch (Throwable err) { @@ -639,14 +741,15 @@ public class TestH5Pfapl { } @Test - public void testH5P_chunk_cache() { + public void testH5P_chunk_cache() + { long[] rdcc_nslots = {0}; long[] rdcc_nbytes = {0}; - double[] rdcc_w0 = {0}; + double[] rdcc_w0 = {0}; try { H5.H5Pget_chunk_cache(dapl_id, rdcc_nslots, rdcc_nbytes, rdcc_w0); assertTrue("H5P_chunk_cache default", rdcc_nslots[0] == 521); - assertTrue("H5P_chunk_cache default", rdcc_nbytes[0] == (1024*1024)); + assertTrue("H5P_chunk_cache default", rdcc_nbytes[0] == (1024 * 1024)); assertTrue("H5P_chunk_cache default", rdcc_w0[0] == 0.75); } catch (Throwable err) { @@ -666,11 +769,12 @@ public class TestH5Pfapl { } @Test - public void testH5P_sieve_buf_size() { + public void testH5P_sieve_buf_size() + { long buf_size = 0; try { buf_size = H5.H5Pget_sieve_buf_size(fapl_id); - assertTrue("H5P_sieve_buf_size default", buf_size == (64*1024)); + assertTrue("H5P_sieve_buf_size default", buf_size == (64 * 1024)); } catch (Throwable err) { err.printStackTrace(); @@ -689,7 +793,8 @@ public class TestH5Pfapl { } @Test - public void testH5P_gc_references() { + public void testH5P_gc_references() + { boolean ret_val_id = false; try { H5.H5Pset_gc_references(fapl_id, true); @@ -703,11 +808,13 @@ public class TestH5Pfapl { } @Test - public void testH5Pget_mdc_config() { + public void testH5Pget_mdc_config() + { H5AC_cache_config_t cache_config = null; try { cache_config = H5.H5Pget_mdc_config(fapl_id); - assertTrue("H5Pget_mdc_config", cache_config.version==HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION); + assertTrue("H5Pget_mdc_config", + cache_config.version == HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION); } catch (Throwable err) { err.printStackTrace(); @@ -716,11 +823,13 @@ public class TestH5Pfapl { } @Test - public void testH5Pset_mdc_config() { + public void testH5Pset_mdc_config() + { H5AC_cache_config_t cache_config = null; try { cache_config = H5.H5Pget_mdc_config(fapl_id); - assertTrue("H5Pset_mdc_config", cache_config.version==HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION); + assertTrue("H5Pset_mdc_config", + cache_config.version == HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION); } catch (Throwable err) { err.printStackTrace(); @@ -730,8 +839,9 @@ public class TestH5Pfapl { cache_config.decr_mode = HDF5Constants.H5C_decr_off; H5.H5Pset_mdc_config(fapl_id, cache_config); cache_config = H5.H5Pget_mdc_config(fapl_id); - assertTrue("H5Pset_mdc_config", cache_config.version==HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION); - assertTrue("H5Pset_mdc_config", cache_config.decr_mode==HDF5Constants.H5C_decr_off); + assertTrue("H5Pset_mdc_config", + cache_config.version == HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION); + assertTrue("H5Pset_mdc_config", cache_config.decr_mode == HDF5Constants.H5C_decr_off); } catch (Throwable err) { err.printStackTrace(); @@ -740,24 +850,25 @@ public class TestH5Pfapl { } @Test - public void testH5P_fapl_core() { + public void testH5P_fapl_core() + { if (HDF5Constants.H5FD_CORE < 0) return; try { H5.H5Pset_fapl_core(fapl_id, 4096, false); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: core = "+ driver_type, HDF5Constants.H5FD_CORE==driver_type); + assertTrue("H5Pget_driver: core = " + driver_type, HDF5Constants.H5FD_CORE == driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_core: " + err); } try { - long[] increment = {-1}; + long[] increment = {-1}; boolean[] backingstore = {true}; H5.H5Pget_fapl_core(fapl_id, increment, backingstore); - assertTrue("H5Pget_fapl_core: increment="+increment[0], increment[0]==4096); - assertTrue("H5Pget_fapl_core: backingstore="+backingstore[0], !backingstore[0]); + assertTrue("H5Pget_fapl_core: increment=" + increment[0], increment[0] == 4096); + assertTrue("H5Pget_fapl_core: backingstore=" + backingstore[0], !backingstore[0]); } catch (Throwable err) { err.printStackTrace(); @@ -766,13 +877,14 @@ public class TestH5Pfapl { } @Test - public void testH5P_fapl_family() { + public void testH5P_fapl_family() + { if (HDF5Constants.H5FD_FAMILY < 0) return; try { H5.H5Pset_fapl_family(fapl_id, 1024, HDF5Constants.H5P_DEFAULT); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: family = "+ driver_type, HDF5Constants.H5FD_FAMILY==driver_type); + assertTrue("H5Pget_driver: family = " + driver_type, HDF5Constants.H5FD_FAMILY == driver_type); } catch (Throwable err) { err.printStackTrace(); @@ -782,8 +894,9 @@ public class TestH5Pfapl { long[] member_size = {0}; long[] member_fapl = {-1}; H5.H5Pget_fapl_family(fapl_id, member_size, member_fapl); - assertTrue("H5Pget_fapl_family: member_size="+member_size[0], member_size[0]==1024); - assertTrue("H5Pget_fapl_family: member_fapl ", H5.H5P_equal(member_fapl[0], HDF5Constants.H5P_FILE_ACCESS_DEFAULT)); + assertTrue("H5Pget_fapl_family: member_size=" + member_size[0], member_size[0] == 1024); + assertTrue("H5Pget_fapl_family: member_fapl ", + H5.H5P_equal(member_fapl[0], HDF5Constants.H5P_FILE_ACCESS_DEFAULT)); } catch (Throwable err) { err.printStackTrace(); @@ -794,13 +907,14 @@ public class TestH5Pfapl { } @Test - public void testH5P_family_offset() { + public void testH5P_family_offset() + { if (HDF5Constants.H5FD_FAMILY < 0) return; try { H5.H5Pset_fapl_family(fapl_id, 1024, HDF5Constants.H5P_DEFAULT); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: family = "+ driver_type, HDF5Constants.H5FD_FAMILY==driver_type); + assertTrue("H5Pget_driver: family = " + driver_type, HDF5Constants.H5FD_FAMILY == driver_type); } catch (Throwable err) { err.printStackTrace(); @@ -817,7 +931,7 @@ public class TestH5Pfapl { } try { long offset = H5.H5Pget_family_offset(fapl_id); - assertTrue("H5Pget_fapl_family: offset="+offset, offset==family_offset); + assertTrue("H5Pget_fapl_family: offset=" + offset, offset == family_offset); } catch (Throwable err) { err.printStackTrace(); @@ -827,13 +941,14 @@ public class TestH5Pfapl { } @Test - public void testH5Pset_fapl_sec2() { + public void testH5Pset_fapl_sec2() + { if (HDF5Constants.H5FD_SEC2 < 0) return; try { H5.H5Pset_fapl_sec2(fapl_id); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: sec2 = "+ driver_type, HDF5Constants.H5FD_SEC2==driver_type); + assertTrue("H5Pget_driver: sec2 = " + driver_type, HDF5Constants.H5FD_SEC2 == driver_type); } catch (Throwable err) { err.printStackTrace(); @@ -844,13 +959,14 @@ public class TestH5Pfapl { } @Test - public void testH5Pset_fapl_stdio() { + public void testH5Pset_fapl_stdio() + { if (HDF5Constants.H5FD_STDIO < 0) return; try { H5.H5Pset_fapl_stdio(fapl_id); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: stdio = "+ driver_type, HDF5Constants.H5FD_STDIO==driver_type); + assertTrue("H5Pget_driver: stdio = " + driver_type, HDF5Constants.H5FD_STDIO == driver_type); } catch (Throwable err) { err.printStackTrace(); @@ -861,14 +977,15 @@ public class TestH5Pfapl { } @Test - public void testH5Pset_fapl_log() { + public void testH5Pset_fapl_log() + { if (HDF5Constants.H5FD_LOG < 0) return; try { long log_flags = HDF5Constants.H5FD_LOG_LOC_IO; H5.H5Pset_fapl_log(fapl_id, H5_LOG_FILE, log_flags, 1024); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: log = "+ driver_type, HDF5Constants.H5FD_LOG==driver_type); + assertTrue("H5Pget_driver: log = " + driver_type, HDF5Constants.H5FD_LOG == driver_type); } catch (Throwable err) { err.printStackTrace(); @@ -880,19 +997,20 @@ public class TestH5Pfapl { } @Test - public void testH5P_fapl_muti_nulls() { + public void testH5P_fapl_muti_nulls() + { if (HDF5Constants.H5FD_MULTI < 0) return; - int[] member_map = null; - long[] member_fapl = null; + int[] member_map = null; + long[] member_fapl = null; String[] member_name = null; - long[] member_addr = null; + long[] member_addr = null; try { H5.H5Pset_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr, true); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: multi = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type); + assertTrue("H5Pget_driver: multi = " + driver_type, HDF5Constants.H5FD_MULTI == driver_type); } catch (Throwable err) { err.printStackTrace(); @@ -911,53 +1029,68 @@ public class TestH5Pfapl { } @Test - public void testH5P_fapl_muti_defaults() { + public void testH5P_fapl_muti_defaults() + { if (HDF5Constants.H5FD_MULTI < 0) return; int H5FD_MEM_NTYPES = HDF5Constants.H5FD_MEM_NTYPES; // 7 long sH5FD_MEM_DEFAULT_HADDR = HDF5Constants.H5FD_DEFAULT_HADDR_SIZE; - long sH5FD_MEM_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_SIZE; - long sH5FD_MEM_SUPER_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_SUPER_SIZE; - long sH5FD_MEM_BTREE_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_BTREE_SIZE; - long sH5FD_MEM_DRAW_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_DRAW_SIZE; - long sH5FD_MEM_GHEAP_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_GHEAP_SIZE; - long sH5FD_MEM_LHEAP_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_LHEAP_SIZE; - long sH5FD_MEM_OHDR_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_OHDR_SIZE; - int[] member_map = null; - long[] member_fapl = null; - String[] member_name = null; - long[] member_addr = null; + long sH5FD_MEM_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_SIZE; + long sH5FD_MEM_SUPER_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_SUPER_SIZE; + long sH5FD_MEM_BTREE_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_BTREE_SIZE; + long sH5FD_MEM_DRAW_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_DRAW_SIZE; + long sH5FD_MEM_GHEAP_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_GHEAP_SIZE; + long sH5FD_MEM_LHEAP_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_LHEAP_SIZE; + long sH5FD_MEM_OHDR_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_OHDR_SIZE; + int[] member_map = null; + long[] member_fapl = null; + String[] member_name = null; + long[] member_addr = null; try { H5.H5Pset_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr, true); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: multi = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type); + assertTrue("H5Pget_driver: multi = " + driver_type, HDF5Constants.H5FD_MULTI == driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_muti: " + err); } try { - member_map = new int[HDF5Constants.H5FD_MEM_NTYPES]; - member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES]; - member_name = new String[HDF5Constants.H5FD_MEM_NTYPES]; - member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES]; + member_map = new int[HDF5Constants.H5FD_MEM_NTYPES]; + member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES]; + member_name = new String[HDF5Constants.H5FD_MEM_NTYPES]; + member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES]; boolean relax = H5.H5Pget_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr); assertTrue("H5Pget_fapl_muti: relax ", relax); - assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_DEFAULT], member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_DEFAULT); - assertTrue("H5Pget_fapl_muti: member_fapl ", H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT], HDF5Constants.H5P_FILE_ACCESS_DEFAULT)); - assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_DEFAULT], member_name[HDF5Constants.H5FD_MEM_DEFAULT].compareTo("%s-X.h5")==0); - assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_SUPER], member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-s.h5")==0); - assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_BTREE], member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-b.h5")==0); - assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_DRAW], member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-r.h5")==0); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DEFAULT], member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == sH5FD_MEM_HADDR); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_SUPER], member_addr[HDF5Constants.H5FD_MEM_SUPER] == sH5FD_MEM_SUPER_HADDR); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_BTREE], member_addr[HDF5Constants.H5FD_MEM_BTREE] == sH5FD_MEM_BTREE_HADDR); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DRAW], member_addr[HDF5Constants.H5FD_MEM_DRAW] == sH5FD_MEM_DRAW_HADDR); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_GHEAP], member_addr[HDF5Constants.H5FD_MEM_GHEAP] == sH5FD_MEM_GHEAP_HADDR); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_LHEAP], member_addr[HDF5Constants.H5FD_MEM_LHEAP] == sH5FD_MEM_LHEAP_HADDR); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_OHDR], member_addr[HDF5Constants.H5FD_MEM_OHDR] == sH5FD_MEM_OHDR_HADDR); + assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_DEFAULT], + member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_DEFAULT); + assertTrue("H5Pget_fapl_muti: member_fapl ", + H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT], + HDF5Constants.H5P_FILE_ACCESS_DEFAULT)); + assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_DEFAULT], + member_name[HDF5Constants.H5FD_MEM_DEFAULT].compareTo("%s-X.h5") == 0); + assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_SUPER], + member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-s.h5") == 0); + assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_BTREE], + member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-b.h5") == 0); + assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_DRAW], + member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-r.h5") == 0); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_DEFAULT], + member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == sH5FD_MEM_HADDR); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_SUPER], + member_addr[HDF5Constants.H5FD_MEM_SUPER] == sH5FD_MEM_SUPER_HADDR); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_BTREE], + member_addr[HDF5Constants.H5FD_MEM_BTREE] == sH5FD_MEM_BTREE_HADDR); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_DRAW], + member_addr[HDF5Constants.H5FD_MEM_DRAW] == sH5FD_MEM_DRAW_HADDR); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_GHEAP], + member_addr[HDF5Constants.H5FD_MEM_GHEAP] == sH5FD_MEM_GHEAP_HADDR); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_LHEAP], + member_addr[HDF5Constants.H5FD_MEM_LHEAP] == sH5FD_MEM_LHEAP_HADDR); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_OHDR], + member_addr[HDF5Constants.H5FD_MEM_OHDR] == sH5FD_MEM_OHDR_HADDR); } catch (Throwable err) { err.printStackTrace(); @@ -969,20 +1102,21 @@ public class TestH5Pfapl { } @Test - public void testH5P_fapl_muti() { + public void testH5P_fapl_muti() + { if (HDF5Constants.H5FD_MULTI < 0) return; long HADDR_DEFAULT_SIZE = HDF5Constants.H5FD_DEFAULT_HADDR_SIZE; - int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES]; - long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES]; - String[] member_name = new String[HDF5Constants.H5FD_MEM_NTYPES]; - long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES]; + int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES]; + long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES]; + String[] member_name = new String[HDF5Constants.H5FD_MEM_NTYPES]; + long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES]; - for(int mt=HDF5Constants.H5FD_MEM_DEFAULT; mt<HDF5Constants.H5FD_MEM_NTYPES; mt++) { + for (int mt = HDF5Constants.H5FD_MEM_DEFAULT; mt < HDF5Constants.H5FD_MEM_NTYPES; mt++) { member_fapl[mt] = HDF5Constants.H5P_DEFAULT; - member_map[mt] = HDF5Constants.H5FD_MEM_SUPER; + member_map[mt] = HDF5Constants.H5FD_MEM_SUPER; } - member_map[HDF5Constants.H5FD_MEM_DRAW] = HDF5Constants.H5FD_MEM_DRAW; + member_map[HDF5Constants.H5FD_MEM_DRAW] = HDF5Constants.H5FD_MEM_DRAW; member_map[HDF5Constants.H5FD_MEM_BTREE] = HDF5Constants.H5FD_MEM_BTREE; member_map[HDF5Constants.H5FD_MEM_GHEAP] = HDF5Constants.H5FD_MEM_GHEAP; @@ -990,18 +1124,18 @@ public class TestH5Pfapl { member_addr[HDF5Constants.H5FD_MEM_SUPER] = 0; member_name[HDF5Constants.H5FD_MEM_BTREE] = new String("%s-btree.h5"); - member_addr[HDF5Constants.H5FD_MEM_BTREE] = HADDR_DEFAULT_SIZE/4; + member_addr[HDF5Constants.H5FD_MEM_BTREE] = HADDR_DEFAULT_SIZE / 4; member_name[HDF5Constants.H5FD_MEM_DRAW] = new String("%s-draw.h5"); - member_addr[HDF5Constants.H5FD_MEM_DRAW] = HADDR_DEFAULT_SIZE/2; + member_addr[HDF5Constants.H5FD_MEM_DRAW] = HADDR_DEFAULT_SIZE / 2; member_name[HDF5Constants.H5FD_MEM_GHEAP] = new String("%s-gheap.h5"); - member_addr[HDF5Constants.H5FD_MEM_GHEAP] = (HADDR_DEFAULT_SIZE/4)*3; + member_addr[HDF5Constants.H5FD_MEM_GHEAP] = (HADDR_DEFAULT_SIZE / 4) * 3; try { H5.H5Pset_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr, true); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: multi = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type); + assertTrue("H5Pget_driver: multi = " + driver_type, HDF5Constants.H5FD_MULTI == driver_type); } catch (Throwable err) { err.printStackTrace(); @@ -1010,23 +1144,37 @@ public class TestH5Pfapl { try { boolean relax = H5.H5Pget_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr); assertTrue("H5Pget_fapl_muti: relax ", relax); - assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_DEFAULT], member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_SUPER); - assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_DRAW], member_map[HDF5Constants.H5FD_MEM_DRAW] == HDF5Constants.H5FD_MEM_DRAW); - assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_BTREE], member_map[HDF5Constants.H5FD_MEM_BTREE] == HDF5Constants.H5FD_MEM_BTREE); - assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_GHEAP], member_map[HDF5Constants.H5FD_MEM_GHEAP] == HDF5Constants.H5FD_MEM_GHEAP); - - assertTrue("H5Pget_fapl_muti: member_fapl ", H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT], HDF5Constants.H5P_FILE_ACCESS_DEFAULT)); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DEFAULT], member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == 0); - assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_SUPER], member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-super.h5")==0); - - assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_BTREE], member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-btree.h5")==0); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_BTREE], member_addr[HDF5Constants.H5FD_MEM_BTREE] == HADDR_DEFAULT_SIZE/4); - - assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_DRAW], member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-draw.h5")==0); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DRAW], member_addr[HDF5Constants.H5FD_MEM_DRAW] == HADDR_DEFAULT_SIZE/2); - - assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_GHEAP], member_name[HDF5Constants.H5FD_MEM_GHEAP].compareTo("%s-gheap.h5")==0); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_GHEAP], member_addr[HDF5Constants.H5FD_MEM_GHEAP] == (HADDR_DEFAULT_SIZE/4)*3); + assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_DEFAULT], + member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_SUPER); + assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_DRAW], + member_map[HDF5Constants.H5FD_MEM_DRAW] == HDF5Constants.H5FD_MEM_DRAW); + assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_BTREE], + member_map[HDF5Constants.H5FD_MEM_BTREE] == HDF5Constants.H5FD_MEM_BTREE); + assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_GHEAP], + member_map[HDF5Constants.H5FD_MEM_GHEAP] == HDF5Constants.H5FD_MEM_GHEAP); + + assertTrue("H5Pget_fapl_muti: member_fapl ", + H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT], + HDF5Constants.H5P_FILE_ACCESS_DEFAULT)); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_DEFAULT], + member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == 0); + assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_SUPER], + member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-super.h5") == 0); + + assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_BTREE], + member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-btree.h5") == 0); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_BTREE], + member_addr[HDF5Constants.H5FD_MEM_BTREE] == HADDR_DEFAULT_SIZE / 4); + + assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_DRAW], + member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-draw.h5") == 0); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_DRAW], + member_addr[HDF5Constants.H5FD_MEM_DRAW] == HADDR_DEFAULT_SIZE / 2); + + assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_GHEAP], + member_name[HDF5Constants.H5FD_MEM_GHEAP].compareTo("%s-gheap.h5") == 0); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_GHEAP], + member_addr[HDF5Constants.H5FD_MEM_GHEAP] == (HADDR_DEFAULT_SIZE / 4) * 3); } catch (Throwable err) { err.printStackTrace(); @@ -1035,7 +1183,8 @@ public class TestH5Pfapl { _createH5multiFile(fapl_id); try { long file_size = H5.H5Fget_filesize(H5fid); - assertTrue("H5Pget_fapl_muti: file_size ", file_size >= HADDR_DEFAULT_SIZE/4 || file_size <= HADDR_DEFAULT_SIZE/2); + assertTrue("H5Pget_fapl_muti: file_size ", + file_size >= HADDR_DEFAULT_SIZE / 4 || file_size <= HADDR_DEFAULT_SIZE / 2); } catch (Throwable err) { err.printStackTrace(); @@ -1043,67 +1192,71 @@ public class TestH5Pfapl { } _createH5multiFileDS(); deleteH5multifile(); - File file = new File(H5_MULTI_FILE+"-super.h5"); + File file = new File(H5_MULTI_FILE + "-super.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { - ;// e.printStackTrace(); + ; // e.printStackTrace(); } } - file = new File(H5_MULTI_FILE+"-btree.h5"); + file = new File(H5_MULTI_FILE + "-btree.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { - ;// e.printStackTrace(); + ; // e.printStackTrace(); } } - file = new File(H5_MULTI_FILE+"-draw.h5"); + file = new File(H5_MULTI_FILE + "-draw.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { - ;// e.printStackTrace(); + ; // e.printStackTrace(); } } - file = new File(H5_MULTI_FILE+"-gheap.h5"); + file = new File(H5_MULTI_FILE + "-gheap.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { - ;// e.printStackTrace(); + ; // e.printStackTrace(); } } } @Test - public void testH5P_fapl_split() { + public void testH5P_fapl_split() + { if (HDF5Constants.H5FD_MULTI < 0) return; try { - H5.H5Pset_fapl_split(fapl_id, "-meta.h5", HDF5Constants.H5P_DEFAULT, "-raw.h5", HDF5Constants.H5P_DEFAULT); + H5.H5Pset_fapl_split(fapl_id, "-meta.h5", HDF5Constants.H5P_DEFAULT, "-raw.h5", + HDF5Constants.H5P_DEFAULT); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: split = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type); + assertTrue("H5Pget_driver: split = " + driver_type, HDF5Constants.H5FD_MULTI == driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_split: " + err); } try { - int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES]; - long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES]; + int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES]; + long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES]; String[] member_name = new String[HDF5Constants.H5FD_MEM_NTYPES]; - long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES]; + long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES]; boolean relax = H5.H5Pget_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr); assertTrue("H5Pget_fapl_multi: relax ", relax); - assertTrue("H5Pget_fapl_multi: member_name="+member_name[HDF5Constants.H5FD_MEM_SUPER], member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-meta.h5")==0); - assertTrue("H5Pget_fapl_multi: member_name="+member_name[HDF5Constants.H5FD_MEM_DRAW], member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-raw.h5")==0); + assertTrue("H5Pget_fapl_multi: member_name=" + member_name[HDF5Constants.H5FD_MEM_SUPER], + member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-meta.h5") == 0); + assertTrue("H5Pget_fapl_multi: member_name=" + member_name[HDF5Constants.H5FD_MEM_DRAW], + member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-raw.h5") == 0); } catch (Throwable err) { err.printStackTrace(); @@ -1111,34 +1264,35 @@ public class TestH5Pfapl { } _createH5multiFile(fapl_id); deleteH5multifile(); - File file = new File(H5_MULTI_FILE+"-meta.h5"); + File file = new File(H5_MULTI_FILE + "-meta.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { - ;// e.printStackTrace(); + ; // e.printStackTrace(); } } - file = new File(H5_MULTI_FILE+"-raw.h5"); + file = new File(H5_MULTI_FILE + "-raw.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { - ;// e.printStackTrace(); + ; // e.printStackTrace(); } } } @Test - public void testH5P_fapl_direct() { + public void testH5P_fapl_direct() + { if (HDF5Constants.H5FD_DIRECT < 0) return; try { - H5.H5Pset_fapl_direct(fapl_id, 1024, 4096, 8*4096); + H5.H5Pset_fapl_direct(fapl_id, 1024, 4096, 8 * 4096); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: direct = "+ driver_type, HDF5Constants.H5FD_DIRECT==driver_type); + assertTrue("H5Pget_driver: direct = " + driver_type, HDF5Constants.H5FD_DIRECT == driver_type); } catch (Throwable err) { err.printStackTrace(); @@ -1147,9 +1301,9 @@ public class TestH5Pfapl { try { long[] params = {-1, -1, -1}; H5.H5Pget_fapl_direct(fapl_id, params); - assertTrue("H5Pget_fapl_direct: alignment="+params[0], params[0]==1024); - assertTrue("H5Pget_fapl_direct: block_size="+params[1], params[1]==4096); - assertTrue("H5Pget_fapl_direct: cbuf_size="+params[2], params[2]==8*4096); + assertTrue("H5Pget_fapl_direct: alignment=" + params[0], params[0] == 1024); + assertTrue("H5Pget_fapl_direct: block_size=" + params[1], params[1] == 4096); + assertTrue("H5Pget_fapl_direct: cbuf_size=" + params[2], params[2] == 8 * 4096); } catch (Throwable err) { err.printStackTrace(); @@ -1160,13 +1314,14 @@ public class TestH5Pfapl { } @Test - public void testH5Pset_fapl_windows() { + public void testH5Pset_fapl_windows() + { if (HDF5Constants.H5FD_WINDOWS < 0) return; try { H5.H5Pset_fapl_windows(fapl_id); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: windows = "+ driver_type, HDF5Constants.H5FD_WINDOWS==driver_type); + assertTrue("H5Pget_driver: windows = " + driver_type, HDF5Constants.H5FD_WINDOWS == driver_type); } catch (Throwable err) { err.printStackTrace(); @@ -1177,19 +1332,20 @@ public class TestH5Pfapl { } @Test - public void testH5Pmulti_transform() { + public void testH5Pmulti_transform() + { if (HDF5Constants.H5FD_MULTI < 0) return; - String f_to_c = "(5/9.0)*(x-32)"; + String f_to_c = "(5/9.0)*(x-32)"; double windchillFread[][] = new double[DIMF_X][DIMF_Y]; double windchillC; NumberFormat formatter = new DecimalFormat("#0.000"); - long HADDRMAX = HDF5Constants.H5FD_DEFAULT_HADDR_SIZE; + long HADDRMAX = HDF5Constants.H5FD_DEFAULT_HADDR_SIZE; - int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES]; - long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES]; + int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES]; + long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES]; String[] member_name = new String[HDF5Constants.H5FD_MEM_NTYPES]; - long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES]; + long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES]; try { H5.H5Pset_data_transform(plist_id, f_to_c); @@ -1200,11 +1356,11 @@ public class TestH5Pfapl { fail("H5Pdata_transform: " + err); } - for(int mt=HDF5Constants.H5FD_MEM_DEFAULT; mt<HDF5Constants.H5FD_MEM_NTYPES; mt++) { + for (int mt = HDF5Constants.H5FD_MEM_DEFAULT; mt < HDF5Constants.H5FD_MEM_NTYPES; mt++) { member_fapl[mt] = HDF5Constants.H5P_DEFAULT; - member_map[mt] = HDF5Constants.H5FD_MEM_SUPER; + member_map[mt] = HDF5Constants.H5FD_MEM_SUPER; } - member_map[HDF5Constants.H5FD_MEM_DRAW] = HDF5Constants.H5FD_MEM_DRAW; + member_map[HDF5Constants.H5FD_MEM_DRAW] = HDF5Constants.H5FD_MEM_DRAW; member_map[HDF5Constants.H5FD_MEM_BTREE] = HDF5Constants.H5FD_MEM_BTREE; member_map[HDF5Constants.H5FD_MEM_GHEAP] = HDF5Constants.H5FD_MEM_GHEAP; @@ -1212,18 +1368,18 @@ public class TestH5Pfapl { member_addr[HDF5Constants.H5FD_MEM_SUPER] = 0; member_name[HDF5Constants.H5FD_MEM_BTREE] = new String("%s-btree.h5"); - member_addr[HDF5Constants.H5FD_MEM_BTREE] = HADDRMAX/4; + member_addr[HDF5Constants.H5FD_MEM_BTREE] = HADDRMAX / 4; member_name[HDF5Constants.H5FD_MEM_DRAW] = new String("%s-draw.h5"); - member_addr[HDF5Constants.H5FD_MEM_DRAW] = HADDRMAX/2; + member_addr[HDF5Constants.H5FD_MEM_DRAW] = HADDRMAX / 2; member_name[HDF5Constants.H5FD_MEM_GHEAP] = new String("%s-gheap.h5"); - member_addr[HDF5Constants.H5FD_MEM_GHEAP] = (HADDRMAX/4)*3; + member_addr[HDF5Constants.H5FD_MEM_GHEAP] = (HADDRMAX / 4) * 3; try { H5.H5Pset_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr, true); long driver_type = H5.H5Pget_driver(fapl_id); - assertTrue("H5Pget_driver: multi = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type); + assertTrue("H5Pget_driver: multi = " + driver_type, HDF5Constants.H5FD_MULTI == driver_type); } catch (Throwable err) { err.printStackTrace(); @@ -1232,23 +1388,37 @@ public class TestH5Pfapl { try { boolean relax = H5.H5Pget_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr); assertTrue("H5Pget_fapl_muti: relax ", relax); - assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_DEFAULT], member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_SUPER); - assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_DRAW], member_map[HDF5Constants.H5FD_MEM_DRAW] == HDF5Constants.H5FD_MEM_DRAW); - assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_BTREE], member_map[HDF5Constants.H5FD_MEM_BTREE] == HDF5Constants.H5FD_MEM_BTREE); - assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_GHEAP], member_map[HDF5Constants.H5FD_MEM_GHEAP] == HDF5Constants.H5FD_MEM_GHEAP); - - assertTrue("H5Pget_fapl_muti: member_fapl ", H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT], HDF5Constants.H5P_FILE_ACCESS_DEFAULT)); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DEFAULT], member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == 0); - assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_SUPER], member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-super.h5")==0); - - assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_BTREE], member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-btree.h5")==0); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_BTREE], member_addr[HDF5Constants.H5FD_MEM_BTREE] == HADDRMAX/4); - - assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_DRAW], member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-draw.h5")==0); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DRAW], member_addr[HDF5Constants.H5FD_MEM_DRAW] == HADDRMAX/2); - - assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_GHEAP], member_name[HDF5Constants.H5FD_MEM_GHEAP].compareTo("%s-gheap.h5")==0); - assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_GHEAP], member_addr[HDF5Constants.H5FD_MEM_GHEAP] == (HADDRMAX/4)*3); + assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_DEFAULT], + member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_SUPER); + assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_DRAW], + member_map[HDF5Constants.H5FD_MEM_DRAW] == HDF5Constants.H5FD_MEM_DRAW); + assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_BTREE], + member_map[HDF5Constants.H5FD_MEM_BTREE] == HDF5Constants.H5FD_MEM_BTREE); + assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_GHEAP], + member_map[HDF5Constants.H5FD_MEM_GHEAP] == HDF5Constants.H5FD_MEM_GHEAP); + + assertTrue("H5Pget_fapl_muti: member_fapl ", + H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT], + HDF5Constants.H5P_FILE_ACCESS_DEFAULT)); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_DEFAULT], + member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == 0); + assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_SUPER], + member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-super.h5") == 0); + + assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_BTREE], + member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-btree.h5") == 0); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_BTREE], + member_addr[HDF5Constants.H5FD_MEM_BTREE] == HADDRMAX / 4); + + assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_DRAW], + member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-draw.h5") == 0); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_DRAW], + member_addr[HDF5Constants.H5FD_MEM_DRAW] == HADDRMAX / 2); + + assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_GHEAP], + member_name[HDF5Constants.H5FD_MEM_GHEAP].compareTo("%s-gheap.h5") == 0); + assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_GHEAP], + member_addr[HDF5Constants.H5FD_MEM_GHEAP] == (HADDRMAX / 4) * 3); } catch (Throwable err) { err.printStackTrace(); @@ -1257,7 +1427,8 @@ public class TestH5Pfapl { try { _createH5multiFile(fapl_id); long file_size = H5.H5Fget_filesize(H5fid); - assertTrue("H5Pget_fapl_muti: file_size ", file_size >= HADDRMAX/4 || file_size <= HADDRMAX/2); + assertTrue("H5Pget_fapl_muti: file_size ", + file_size >= HADDRMAX / 4 || file_size <= HADDRMAX / 2); _createH5multiFileDS(); _createFloatDataset(); } @@ -1267,68 +1438,70 @@ public class TestH5Pfapl { } try { H5.H5Dwrite(H5Fdid, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - plist_id, windchillF); + plist_id, windchillF); H5.H5Dread(H5Fdid, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, windchillFread); + HDF5Constants.H5P_DEFAULT, windchillFread); } catch (Throwable err) { err.printStackTrace(); fail("H5Pdata_transform: " + err); } - for(int row = 0; row < DIMF_X; row++) { - for(int col = 0; col < DIMF_Y; col++) { - windchillC = (5/9.0)*(windchillF[row][col]-32); - String Cstr = formatter.format(windchillC); + for (int row = 0; row < DIMF_X; row++) { + for (int col = 0; col < DIMF_Y; col++) { + windchillC = (5 / 9.0) * (windchillF[row][col] - 32); + String Cstr = formatter.format(windchillC); String Fread = formatter.format(windchillFread[row][col]); - assertTrue("H5Pdata_transform: <"+row+","+col+">"+Fread+"="+Cstr, Fread.compareTo(Cstr)==0); + assertTrue("H5Pdata_transform: <" + row + "," + col + ">" + Fread + "=" + Cstr, + Fread.compareTo(Cstr) == 0); } } deleteH5multifile(); - File file = new File(H5_MULTI_FILE+"-super.h5"); + File file = new File(H5_MULTI_FILE + "-super.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { - ;// e.printStackTrace(); + ; // e.printStackTrace(); } } - file = new File(H5_MULTI_FILE+"-btree.h5"); + file = new File(H5_MULTI_FILE + "-btree.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { - ;// e.printStackTrace(); + ; // e.printStackTrace(); } } - file = new File(H5_MULTI_FILE+"-draw.h5"); + file = new File(H5_MULTI_FILE + "-draw.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { - ;// e.printStackTrace(); + ; // e.printStackTrace(); } } - file = new File(H5_MULTI_FILE+"-gheap.h5"); + file = new File(H5_MULTI_FILE + "-gheap.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { - ;// e.printStackTrace(); + ; // e.printStackTrace(); } } } @Test - public void testH5Fmdc_logging() { + public void testH5Fmdc_logging() + { boolean[] mdc_logging_status = {false, false}; - boolean[] mdc_log_options = {false, false}; + boolean[] mdc_log_options = {false, false}; try { - boolean is_enabled = true; + boolean is_enabled = true; boolean start_on_access = false; H5.H5Pset_mdc_log_options(fapl_id, is_enabled, H5_LOG_FILE, start_on_access); @@ -1336,7 +1509,8 @@ public class TestH5Pfapl { assertTrue("H5.H5Pget_mdc_log_options: is_enabled", mdc_log_options[0]); assertFalse("H5.H5Pget_mdc_log_options: start_on_access_out", mdc_log_options[1]); - H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST, HDF5Constants.H5F_LIBVER_LATEST); + H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST, + HDF5Constants.H5F_LIBVER_LATEST); } catch (Throwable err) { err.printStackTrace(); @@ -1370,7 +1544,7 @@ public class TestH5Pfapl { catch (Throwable err) { fail("stop H5.H5Fget_mdc_logging_status: " + err); } -// assertFalse("stop: is_enabled", mdc_logging_status[0]); + // assertFalse("stop: is_enabled", mdc_logging_status[0]); assertFalse("stop: is_currently_logging", mdc_logging_status[1]); deleteH5file(); @@ -1378,7 +1552,8 @@ public class TestH5Pfapl { } @Test - public void testH5P_evict_on_close() { + public void testH5P_evict_on_close() + { boolean ret_val_id = false; try { H5.H5Pset_evict_on_close(fapl_id, true); @@ -1399,20 +1574,21 @@ public class TestH5Pfapl { } @Test - public void testH5P_file_locking() { - boolean use_file_locking = false; + public void testH5P_file_locking() + { + boolean use_file_locking = false; boolean ignore_disabled_file_locking = false; try { // false values (usually not the default) H5.H5Pset_file_locking(fapl_id, false, false); - use_file_locking = H5.H5Pget_use_file_locking(fapl_id); + use_file_locking = H5.H5Pget_use_file_locking(fapl_id); ignore_disabled_file_locking = H5.H5Pget_ignore_disabled_file_locking(fapl_id); assertFalse("H5P_file_locking", use_file_locking); assertFalse("H5P_file_locking", ignore_disabled_file_locking); // true values (typically the default) H5.H5Pset_file_locking(fapl_id, true, true); - use_file_locking = H5.H5Pget_use_file_locking(fapl_id); + use_file_locking = H5.H5Pget_use_file_locking(fapl_id); ignore_disabled_file_locking = H5.H5Pget_ignore_disabled_file_locking(fapl_id); assertTrue("H5P_file_locking", use_file_locking); assertTrue("H5P_file_locking", ignore_disabled_file_locking); diff --git a/java/test/TestH5Pfaplhdfs.java b/java/test/TestH5Pfaplhdfs.java index d922666..e99967b 100644 --- a/java/test/TestH5Pfaplhdfs.java +++ b/java/test/TestH5Pfaplhdfs.java @@ -31,12 +31,13 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Pfaplhdfs { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); - long fapl_id = HDF5Constants.H5I_INVALID_HID; - long plapl_id = HDF5Constants.H5I_INVALID_HID; - long dapl_id = HDF5Constants.H5I_INVALID_HID; - long plist_id = HDF5Constants.H5I_INVALID_HID; + long fapl_id = HDF5Constants.H5I_INVALID_HID; + long plapl_id = HDF5Constants.H5I_INVALID_HID; + long dapl_id = HDF5Constants.H5I_INVALID_HID; + long plist_id = HDF5Constants.H5I_INVALID_HID; long btplist_id = HDF5Constants.H5I_INVALID_HID; @Before @@ -62,9 +63,9 @@ public class TestH5Pfaplhdfs { } assertTrue(plapl_id > 0); try { - plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); + plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); btplist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); - dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); + dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); } catch (Throwable err) { err.printStackTrace(); @@ -79,15 +80,35 @@ public class TestH5Pfaplhdfs { public void deleteFileAccess() throws HDF5LibraryException { if (fapl_id > 0) - try {H5.H5Pclose(fapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(fapl_id); + } + catch (Exception ex) { + } if (plapl_id > 0) - try {H5.H5Pclose(plapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(plapl_id); + } + catch (Exception ex) { + } if (dapl_id > 0) - try {H5.H5Pclose(dapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(dapl_id); + } + catch (Exception ex) { + } if (plist_id > 0) - try {H5.H5Pclose(plist_id);} catch (Exception ex) {} + try { + H5.H5Pclose(plist_id); + } + catch (Exception ex) { + } if (btplist_id > 0) - try {H5.H5Pclose(btplist_id);} catch (Exception ex) {} + try { + H5.H5Pclose(btplist_id); + } + catch (Exception ex) { + } System.out.println(); } @@ -97,19 +118,21 @@ public class TestH5Pfaplhdfs { if (HDF5Constants.H5FD_HDFS < 0) throw new HDF5LibraryException("skip"); - String nodename = "blues"; - int nodeport = 12345; - String username = "sparticus"; + String nodename = "blues"; + int nodeport = 12345; + String username = "sparticus"; String kerbcache = "/dev/null"; - int streamsize = 1024; + int streamsize = 1024; - final H5FD_hdfs_fapl_t config = new H5FD_hdfs_fapl_t(nodename, nodeport, username, kerbcache, streamsize); + final H5FD_hdfs_fapl_t config = + new H5FD_hdfs_fapl_t(nodename, nodeport, username, kerbcache, streamsize); assertTrue("setting fapl should succeed", -1 < H5.H5Pset_fapl_hdfs(fapl_id, config)); assertEquals("driver types should match", HDF5Constants.H5FD_HDFS, H5.H5Pget_driver(fapl_id)); H5FD_hdfs_fapl_t copy = H5.H5Pget_fapl_hdfs(fapl_id); - assertEquals("fapl contents should match", new H5FD_hdfs_fapl_t(nodename, nodeport, username, kerbcache, streamsize), copy); + assertEquals("fapl contents should match", + new H5FD_hdfs_fapl_t(nodename, nodeport, username, kerbcache, streamsize), copy); } @Test(expected = HDF5LibraryException.class) @@ -125,13 +148,12 @@ public class TestH5Pfaplhdfs { { if (HDF5Constants.H5FD_HDFS < 0) throw new HDF5LibraryException("skip"); - if (HDF5Constants.H5FD_SEC2 < 0 ) + if (HDF5Constants.H5FD_SEC2 < 0) throw new HDF5LibraryException("skip"); - /* TODO: for now, test against a sec2 fapl only */ + /* TODO: for now, test against a sec2 fapl only */ H5.H5Pset_fapl_sec2(fapl_id); assertEquals("fapl_id was not set properly", HDF5Constants.H5FD_SEC2, H5.H5Pget_driver(fapl_id)); H5FD_hdfs_fapl_t fails = H5.H5Pget_fapl_hdfs(fapl_id); } - } diff --git a/java/test/TestH5Pfapls3.java b/java/test/TestH5Pfapls3.java index dda2716..06baef2 100644 --- a/java/test/TestH5Pfapls3.java +++ b/java/test/TestH5Pfapls3.java @@ -31,12 +31,13 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Pfapls3 { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); - long fapl_id = HDF5Constants.H5I_INVALID_HID; - long plapl_id = HDF5Constants.H5I_INVALID_HID; - long dapl_id = HDF5Constants.H5I_INVALID_HID; - long plist_id = HDF5Constants.H5I_INVALID_HID; + long fapl_id = HDF5Constants.H5I_INVALID_HID; + long plapl_id = HDF5Constants.H5I_INVALID_HID; + long dapl_id = HDF5Constants.H5I_INVALID_HID; + long plist_id = HDF5Constants.H5I_INVALID_HID; long btplist_id = HDF5Constants.H5I_INVALID_HID; @Before @@ -62,9 +63,9 @@ public class TestH5Pfapls3 { } assertTrue(plapl_id > 0); try { - plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); + plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); btplist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); - dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); + dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); } catch (Throwable err) { err.printStackTrace(); @@ -79,15 +80,35 @@ public class TestH5Pfapls3 { public void deleteFileAccess() throws HDF5LibraryException { if (fapl_id > 0) - try {H5.H5Pclose(fapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(fapl_id); + } + catch (Exception ex) { + } if (plapl_id > 0) - try {H5.H5Pclose(plapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(plapl_id); + } + catch (Exception ex) { + } if (dapl_id > 0) - try {H5.H5Pclose(dapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(dapl_id); + } + catch (Exception ex) { + } if (plist_id > 0) - try {H5.H5Pclose(plist_id);} catch (Exception ex) {} + try { + H5.H5Pclose(plist_id); + } + catch (Exception ex) { + } if (btplist_id > 0) - try {H5.H5Pclose(btplist_id);} catch (Exception ex) {} + try { + H5.H5Pclose(btplist_id); + } + catch (Exception ex) { + } System.out.println(); } @@ -98,18 +119,15 @@ public class TestH5Pfapls3 { return; final H5FD_ros3_fapl_t config = new H5FD_ros3_fapl_t(); - assertEquals("Default fapl has unexpected contents", - new H5FD_ros3_fapl_t("", "", ""), config); + assertEquals("Default fapl has unexpected contents", new H5FD_ros3_fapl_t("", "", ""), config); H5.H5Pset_fapl_ros3(fapl_id, config); - assertEquals("driver types don't match", - HDF5Constants.H5FD_ROS3, H5.H5Pget_driver(fapl_id)); + assertEquals("driver types don't match", HDF5Constants.H5FD_ROS3, H5.H5Pget_driver(fapl_id)); /* get_fapl_ros3 can throw exception in error cases */ H5FD_ros3_fapl_t copy = H5.H5Pget_fapl_ros3(fapl_id); - assertEquals("contents of fapl set and get don't match", - new H5FD_ros3_fapl_t("", "", ""), copy); + assertEquals("contents of fapl set and get don't match", new H5FD_ros3_fapl_t("", "", ""), copy); } @Test(expected = HDF5LibraryException.class) @@ -125,13 +143,12 @@ public class TestH5Pfapls3 { { if (HDF5Constants.H5FD_ROS3 < 0) throw new HDF5LibraryException("skip"); - if (HDF5Constants.H5FD_SEC2 < 0 ) + if (HDF5Constants.H5FD_SEC2 < 0) throw new HDF5LibraryException("skip"); - /* TODO: for now, test against a sec2 fapl only */ + /* TODO: for now, test against a sec2 fapl only */ H5.H5Pset_fapl_sec2(fapl_id); - assertEquals("fapl_id was not set properly", - HDF5Constants.H5FD_SEC2, H5.H5Pget_driver(fapl_id)); + assertEquals("fapl_id was not set properly", HDF5Constants.H5FD_SEC2, H5.H5Pget_driver(fapl_id)); H5FD_ros3_fapl_t fails = H5.H5Pget_fapl_ros3(fapl_id); } @@ -147,12 +164,10 @@ public class TestH5Pfapls3 { final H5FD_ros3_fapl_t config = new H5FD_ros3_fapl_t(region, acc_id, acc_key); H5.H5Pset_fapl_ros3(fapl_id, config); - assertEquals("driver types don't match", - HDF5Constants.H5FD_ROS3, H5.H5Pget_driver(fapl_id)); + assertEquals("driver types don't match", HDF5Constants.H5FD_ROS3, H5.H5Pget_driver(fapl_id)); H5FD_ros3_fapl_t copy = H5.H5Pget_fapl_ros3(fapl_id); assertEquals("contents of fapl set and get don't match", - new H5FD_ros3_fapl_t(region, acc_id, acc_key), copy); + new H5FD_ros3_fapl_t(region, acc_id, acc_key), copy); } - } diff --git a/java/test/TestH5Plist.java b/java/test/TestH5Plist.java index 03e1c8f..d8a429b 100644 --- a/java/test/TestH5Plist.java +++ b/java/test/TestH5Plist.java @@ -17,11 +17,11 @@ import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; -import java.util.ArrayList; import java.io.File; +import java.nio.charset.StandardCharsets; import java.text.DecimalFormat; import java.text.NumberFormat; -import java.nio.charset.StandardCharsets; +import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; @@ -32,15 +32,15 @@ import hdf.hdf5lib.callbacks.H5P_cls_copy_func_cb; import hdf.hdf5lib.callbacks.H5P_cls_copy_func_t; import hdf.hdf5lib.callbacks.H5P_cls_create_func_cb; import hdf.hdf5lib.callbacks.H5P_cls_create_func_t; -import hdf.hdf5lib.callbacks.H5P_prp_set_func_cb; -import hdf.hdf5lib.callbacks.H5P_prp_get_func_cb; -import hdf.hdf5lib.callbacks.H5P_prp_delete_func_cb; -import hdf.hdf5lib.callbacks.H5P_prp_copy_func_cb; -import hdf.hdf5lib.callbacks.H5P_prp_compare_func_cb; -import hdf.hdf5lib.callbacks.H5P_prp_close_func_cb; -import hdf.hdf5lib.callbacks.H5P_prp_create_func_cb; import hdf.hdf5lib.callbacks.H5P_iterate_cb; import hdf.hdf5lib.callbacks.H5P_iterate_t; +import hdf.hdf5lib.callbacks.H5P_prp_close_func_cb; +import hdf.hdf5lib.callbacks.H5P_prp_compare_func_cb; +import hdf.hdf5lib.callbacks.H5P_prp_copy_func_cb; +import hdf.hdf5lib.callbacks.H5P_prp_create_func_cb; +import hdf.hdf5lib.callbacks.H5P_prp_delete_func_cb; +import hdf.hdf5lib.callbacks.H5P_prp_get_func_cb; +import hdf.hdf5lib.callbacks.H5P_prp_set_func_cb; import hdf.hdf5lib.exceptions.HDF5Exception; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5AC_cache_config_t; @@ -52,7 +52,8 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Plist { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); // Property definitions private static final String CLASS1_NAME = "Class 1"; @@ -63,33 +64,31 @@ public class TestH5Plist { // Property definitions private static final String PROP1_NAME = "Property 1"; - private static final int prop1_def = 10; // Property 1 default value - private static final int PROP1_SIZE = 2; + private static final int prop1_def = 10; // Property 1 default value + private static final int PROP1_SIZE = 2; private static final String PROP2_NAME = "Property 2"; - private static final float prop2_def = 3.14F; // Property 2 default value - private static final int PROP2_SIZE = 8; + private static final float prop2_def = 3.14F; // Property 2 default value + private static final int PROP2_SIZE = 8; - private static final String PROP3_NAME = "Property 3"; - private static final char[] prop3_def = {'T','e','n',' ','c','h','a','r','s',' '}; // Property 3 default value - private static final int PROP3_SIZE = 10; + private static final String PROP3_NAME = "Property 3"; + private static final char[] prop3_def = {'T', 'e', 'n', ' ', 'c', + 'h', 'a', 'r', 's', ' '}; // Property 3 default value + private static final int PROP3_SIZE = 10; - private static final String PROP4_NAME = "Property 4"; - private static final double prop4_def = 1.41F; // Property 4 default value - private static final int PROP4_SIZE = 8; + private static final String PROP4_NAME = "Property 4"; + private static final double prop4_def = 1.41F; // Property 4 default value + private static final int PROP4_SIZE = 8; - private static final String [] pnames = { // Names of properties for iterator - PROP1_NAME, - PROP2_NAME, - PROP3_NAME, - PROP4_NAME}; + private static final String[] pnames = { // Names of properties for iterator + PROP1_NAME, PROP2_NAME, PROP3_NAME, PROP4_NAME}; long plist_class_id = HDF5Constants.H5I_INVALID_HID; @Before - public void createPropClass()throws NullPointerException, HDF5Exception + public void createPropClass() throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); // Create a new generic class, derived from the root of the class hierarchy try { @@ -103,20 +102,26 @@ public class TestH5Plist { } @After - public void deleteFileAccess() throws HDF5LibraryException { + public void deleteFileAccess() throws HDF5LibraryException + { if (plist_class_id > 0) - try {H5.H5Pclose(plist_class_id);} catch (Exception ex) {} + try { + H5.H5Pclose(plist_class_id); + } + catch (Exception ex) { + } System.out.println(); } // Test basic generic property list code. Tests creating new generic classes. @Test - public void testH5P_genprop_basic_class() { - int status = -1; - long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID - long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID - long cid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID - String name = null; // Name of class + public void testH5P_genprop_basic_class() + { + int status = -1; + long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID + long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID + long cid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID + String name = null; // Name of class try { // Check class name @@ -127,7 +132,8 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_class_name plist_class_id: " + err); } - assertTrue("Class names don't match!, "+name+"="+CLASS1_NAME+"\n", name.compareTo(CLASS1_NAME)==0); + assertTrue("Class names don't match!, " + name + "=" + CLASS1_NAME + "\n", + name.compareTo(CLASS1_NAME) == 0); // Check class parent try { @@ -196,7 +202,8 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_class_name cid1: " + err); } - assertTrue("Class names don't match!, "+name+"="+CLASS2_NAME+"\n", name.compareTo(CLASS2_NAME)==0); + assertTrue("Class names don't match!, " + name + "=" + CLASS2_NAME + "\n", + name.compareTo(CLASS2_NAME) == 0); // Check class parent try { @@ -270,20 +277,33 @@ public class TestH5Plist { } finally { if (cid3 > 0) - try {H5.H5Pclose_class(cid3);} catch (Throwable err) {} + try { + H5.H5Pclose_class(cid3); + } + catch (Throwable err) { + } if (cid2 > 0) - try {H5.H5Pclose_class(cid2);} catch (Throwable err) {} + try { + H5.H5Pclose_class(cid2); + } + catch (Throwable err) { + } if (cid1 > 0) - try {H5.H5Pclose_class(cid1);} catch (Throwable err) {} + try { + H5.H5Pclose_class(cid1); + } + catch (Throwable err) { + } } } // Test basic generic property list code. Tests adding properties to generic classes. @Test - public void testH5P_genprop_basic_class_prop() { - boolean status = false; - long size = -1; // Generic Property size - long nprops = -1; // Generic Property class number + public void testH5P_genprop_basic_class_prop() + { + boolean status = false; + long size = -1; // Generic Property size + long nprops = -1; // Generic Property class number // Check the number of properties in class try { @@ -293,7 +313,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_nprops plist_class_id: " + err); } - assertTrue("H5Pget_nprops: "+nprops, nprops==0); + assertTrue("H5Pget_nprops: " + nprops, nprops == 0); // Check the existence of the first property (should fail) try { @@ -303,7 +323,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pexist plist_class_id: " + err); } - assertFalse("H5Pexist plist_class_id "+PROP1_NAME, status); + assertFalse("H5Pexist plist_class_id " + PROP1_NAME, status); // Insert first property into class (with no callbacks) try { @@ -313,7 +333,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Pregister2 plist_class_id: "+PROP1_NAME + err); + fail("H5Pregister2 plist_class_id: " + PROP1_NAME + err); } // Try to insert the first property again (should fail) @@ -321,7 +341,7 @@ public class TestH5Plist { byte[] prop_value = HDFNativeData.intToByte(prop1_def); H5.H5Pregister2_nocb(plist_class_id, PROP1_NAME, PROP1_SIZE, prop_value); - fail("H5Pregister2 plist_class_id: "+PROP1_NAME); + fail("H5Pregister2 plist_class_id: " + PROP1_NAME); } catch (Throwable err) { } @@ -334,7 +354,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pexist plist_class_id: " + err); } - assertTrue("H5Pexist plist_class_id "+PROP1_NAME, status); + assertTrue("H5Pexist plist_class_id " + PROP1_NAME, status); // Check the size of the first property try { @@ -344,7 +364,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_size PROP1_NAME: " + err); } - assertTrue("H5Pget_size "+PROP1_NAME +" size: "+size, size == PROP1_SIZE); + assertTrue("H5Pget_size " + PROP1_NAME + " size: " + size, size == PROP1_SIZE); // Check the number of properties in class try { @@ -354,7 +374,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_nprops plist_class_id: " + err); } - assertTrue("H5Pget_nprops: "+nprops, nprops==1); + assertTrue("H5Pget_nprops: " + nprops, nprops == 1); // Insert second property into class (with no callbacks) try { @@ -364,7 +384,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Pregister2 plist_class_id: "+PROP2_NAME + err); + fail("H5Pregister2 plist_class_id: " + PROP2_NAME + err); } // Try to insert the second property again (should fail) @@ -372,7 +392,7 @@ public class TestH5Plist { byte[] prop_value = HDFNativeData.floatToByte(prop2_def); H5.H5Pregister2_nocb(plist_class_id, PROP2_NAME, PROP2_SIZE, prop_value); - fail("H5Pregister2 plist_class_id: "+PROP2_NAME); + fail("H5Pregister2 plist_class_id: " + PROP2_NAME); } catch (Throwable err) { } @@ -385,7 +405,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pexist plist_class_id: " + err); } - assertTrue("H5Pexist plist_class_id "+PROP2_NAME, status); + assertTrue("H5Pexist plist_class_id " + PROP2_NAME, status); // Check the size of the second property try { @@ -395,7 +415,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_size PROP2_NAME: " + err); } - assertTrue("H5Pget_size "+PROP2_NAME +" size: "+size, size == PROP2_SIZE); + assertTrue("H5Pget_size " + PROP2_NAME + " size: " + size, size == PROP2_SIZE); // Check the number of properties in class try { @@ -405,7 +425,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_nprops plist_class_id: " + err); } - assertTrue("H5Pget_nprops: "+nprops, nprops==2); + assertTrue("H5Pget_nprops: " + nprops, nprops == 2); // Insert third property into class (with no callbacks) try { @@ -415,7 +435,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Pregister2 plist_class_id: "+PROP3_NAME + err); + fail("H5Pregister2 plist_class_id: " + PROP3_NAME + err); } // Check the existence of the third property @@ -426,7 +446,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pexist plist_class_id: " + err); } - assertTrue("H5Pexist plist_class_id "+PROP3_NAME, status); + assertTrue("H5Pexist plist_class_id " + PROP3_NAME, status); // Check the size of the third property try { @@ -436,7 +456,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_size PROP3_NAME: " + err); } - assertTrue("H5Pget_size "+PROP3_NAME +" size: "+size, size == PROP3_SIZE); + assertTrue("H5Pget_size " + PROP3_NAME + " size: " + size, size == PROP3_SIZE); // Check the number of properties in class try { @@ -446,7 +466,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_nprops plist_class_id: " + err); } - assertTrue("H5Pget_nprops: "+nprops, nprops==3); + assertTrue("H5Pget_nprops: " + nprops, nprops == 3); // Unregister first property try { @@ -454,7 +474,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Punregister plist_class_id: "+PROP1_NAME + err); + fail("H5Punregister plist_class_id: " + PROP1_NAME + err); } // Try to check the size of the first property (should fail) @@ -473,7 +493,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_nprops plist_class_id: " + err); } - assertTrue("H5Pget_nprops: "+nprops, nprops==2); + assertTrue("H5Pget_nprops: " + nprops, nprops == 2); // Unregister second property try { @@ -481,7 +501,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Punregister plist_class_id: "+PROP2_NAME + err); + fail("H5Punregister plist_class_id: " + PROP2_NAME + err); } // Check the number of properties in class @@ -492,7 +512,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_nprops plist_class_id: " + err); } - assertTrue("H5Pget_nprops: "+nprops, nprops==1); + assertTrue("H5Pget_nprops: " + nprops, nprops == 1); // Unregister third property try { @@ -500,7 +520,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Punregister plist_class_id: "+PROP3_NAME + err); + fail("H5Punregister plist_class_id: " + PROP3_NAME + err); } // Check the number of properties in class @@ -511,16 +531,18 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_nprops plist_class_id: " + err); } - assertTrue("H5Pget_nprops: "+nprops, nprops==0); + assertTrue("H5Pget_nprops: " + nprops, nprops == 0); } // Test basic generic property list code. Tests iterating over properties in a generic class. @Test - public void testH5P_genprop_class_iter() { + public void testH5P_genprop_class_iter() + { class idata { - public String[] iter_names= null; - public int iter_count = -1; - idata(String[] names, int count) { + public String[] iter_names = null; + public int iter_count = -1; + idata(String[] names, int count) + { this.iter_names = names; this.iter_count = count; } @@ -531,16 +553,17 @@ public class TestH5Plist { H5P_iterate_t iter_data = new H5P_iter_data(); class H5P_iter_callback implements H5P_iterate_cb { - public int callback(long list_id, String name, H5P_iterate_t op_data) { + public int callback(long list_id, String name, H5P_iterate_t op_data) + { idata id = ((H5P_iter_data)op_data).iterdata.get(0); return name.compareTo(id.iter_names[id.iter_count++]); } } H5P_iterate_cb iter_cb = new H5P_iter_callback(); - long size = -1; // Generic Property size - long nprops = -1; // Generic Property class number - int[] idx = {0}; // Index to start iteration at + long size = -1; // Generic Property size + long nprops = -1; // Generic Property class number + int[] idx = {0}; // Index to start iteration at // Insert first property into class (with no callbacks) */ try { @@ -550,7 +573,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Pregister2 plist_class_id: "+PROP1_NAME + err); + fail("H5Pregister2 plist_class_id: " + PROP1_NAME + err); } // Insert second property into class (with no callbacks) */ @@ -561,7 +584,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Pregister2 plist_class_id: "+PROP2_NAME + err); + fail("H5Pregister2 plist_class_id: " + PROP2_NAME + err); } // Insert third property into class (with no callbacks) */ @@ -572,7 +595,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Pregister2 plist_class_id: "+PROP3_NAME + err); + fail("H5Pregister2 plist_class_id: " + PROP3_NAME + err); } // Insert fourth property into class (with no callbacks) */ @@ -583,7 +606,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Pregister2 plist_class_id: "+PROP4_NAME + err); + fail("H5Pregister2 plist_class_id: " + PROP4_NAME + err); } // Check the number of properties in class */ @@ -594,7 +617,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_nprops plist_class_id: " + err); } - assertTrue("H5Pget_nprops: "+nprops, nprops==4); + assertTrue("H5Pget_nprops: " + nprops, nprops == 4); // Iterate over all properties in class */ idata id = new idata(pnames, 0); @@ -606,12 +629,14 @@ public class TestH5Plist { err.printStackTrace(); fail("H5.H5Piterate: " + err); } - assertFalse("H5Piterate ",((H5P_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Piterate "+((H5P_iter_data)iter_data).iterdata.size(),((H5P_iter_data)iter_data).iterdata.size()==1); - assertTrue("H5Piterate "+(((H5P_iter_data)iter_data).iterdata.get(0)).iter_count,((idata)((H5P_iter_data)iter_data).iterdata.get(0)).iter_count==4); + assertFalse("H5Piterate ", ((H5P_iter_data)iter_data).iterdata.isEmpty()); + assertTrue("H5Piterate " + ((H5P_iter_data)iter_data).iterdata.size(), + ((H5P_iter_data)iter_data).iterdata.size() == 1); + assertTrue("H5Piterate " + (((H5P_iter_data)iter_data).iterdata.get(0)).iter_count, + ((idata)((H5P_iter_data)iter_data).iterdata.get(0)).iter_count == 4); // Iterate over last three properties in class */ - idx[0] = 1; + idx[0] = 1; ((H5P_iter_data)iter_data).iterdata.get(0).iter_count = 1; try { H5.H5Piterate(plist_class_id, idx, iter_cb, iter_data); @@ -620,21 +645,24 @@ public class TestH5Plist { err.printStackTrace(); fail("H5.H5Piterate: " + err); } - assertFalse("H5Piterate ",((H5P_iter_data)iter_data).iterdata.isEmpty()); - assertTrue("H5Piterate "+((H5P_iter_data)iter_data).iterdata.size(),((H5P_iter_data)iter_data).iterdata.size()==1); - assertTrue("H5Piterate "+(((H5P_iter_data)iter_data).iterdata.get(0)).iter_count,((idata)((H5P_iter_data)iter_data).iterdata.get(0)).iter_count==4); + assertFalse("H5Piterate ", ((H5P_iter_data)iter_data).iterdata.isEmpty()); + assertTrue("H5Piterate " + ((H5P_iter_data)iter_data).iterdata.size(), + ((H5P_iter_data)iter_data).iterdata.size() == 1); + assertTrue("H5Piterate " + (((H5P_iter_data)iter_data).iterdata.get(0)).iter_count, + ((idata)((H5P_iter_data)iter_data).iterdata.get(0)).iter_count == 4); - assertTrue("H5Piterate: "+nprops+"="+idx[0], nprops == idx[0]); + assertTrue("H5Piterate: " + nprops + "=" + idx[0], nprops == idx[0]); } // Test basic generic property list code. // Tests creating new generic property lists and adding and // removing properties from them. @Test - public void testH5P_genprop_basic_list_prop() { - boolean status = false; - long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID - long nprops = -1; // Number of properties in class + public void testH5P_genprop_basic_list_prop() + { + boolean status = false; + long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID + long nprops = -1; // Number of properties in class try { // Add several properties (several w/default values) @@ -647,7 +675,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Pregister2 plist_class_id: "+PROP1_NAME + err); + fail("H5Pregister2 plist_class_id: " + PROP1_NAME + err); } // Insert second property into class (with no callbacks) @@ -658,7 +686,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Pregister2 plist_class_id: "+PROP2_NAME + err); + fail("H5Pregister2 plist_class_id: " + PROP2_NAME + err); } // Create a property list from the class @@ -678,7 +706,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_nprops lid1: " + err); } - assertTrue("H5Pget_nprops: "+nprops, nprops==2); + assertTrue("H5Pget_nprops: " + nprops, nprops == 2); // Add temporary properties @@ -690,7 +718,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Pinsertr2 lid1: "+PROP3_NAME + err); + fail("H5Pinsertr2 lid1: " + PROP3_NAME + err); } // Insert second temporary property into list (with no callbacks) @@ -701,7 +729,7 @@ public class TestH5Plist { } catch (Throwable err) { err.printStackTrace(); - fail("H5Pinsert2 lid1: "+PROP4_NAME + err); + fail("H5Pinsert2 lid1: " + PROP4_NAME + err); } // Check the number of properties in class @@ -712,7 +740,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pget_nprops lid1: " + err); } - assertTrue("H5Pget_nprops: "+nprops, nprops==4); + assertTrue("H5Pget_nprops: " + nprops, nprops == 4); // Check existence of all properties try { @@ -722,7 +750,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pexist plist_class_id: " + err); } - assertTrue("H5Pexist lid1 "+PROP1_NAME, status); + assertTrue("H5Pexist lid1 " + PROP1_NAME, status); try { status = H5.H5Pexist(lid1, PROP2_NAME); } @@ -730,7 +758,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pexist plist_class_id: " + err); } - assertTrue("H5Pexist lid1 "+PROP2_NAME, status); + assertTrue("H5Pexist lid1 " + PROP2_NAME, status); try { status = H5.H5Pexist(lid1, PROP3_NAME); } @@ -738,7 +766,7 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pexist plist_class_id: " + err); } - assertTrue("H5Pexist lid1 "+PROP3_NAME, status); + assertTrue("H5Pexist lid1 " + PROP3_NAME, status); try { status = H5.H5Pexist(lid1, PROP4_NAME); } @@ -746,265 +774,279 @@ public class TestH5Plist { err.printStackTrace(); fail("H5Pexist plist_class_id: " + err); } - assertTrue("H5Pexist lid1 "+PROP4_NAME, status); - + assertTrue("H5Pexist lid1 " + PROP4_NAME, status); } finally { if (lid1 > 0) - try {H5.H5Pclose(lid1);} catch (Throwable err) {} + try { + H5.H5Pclose(lid1); + } + catch (Throwable err) { + } } } -// // Test basic generic property list code. Tests callbacks for property lists in a generic class. -// @Test -// public void testH5P_genprop_class_callback() { -// class cdata { -// public long cls_id = HDF5Constants.H5I_INVALID_HID; -// public int cls_count = -1; -// cdata(long id, int count) { -// this.cls_id = id; -// this.cls_count = count; -// } -// } -// class H5P_cls_create_data implements H5P_cls_create_func_t { -// public ArrayList<cdata> clsdata = new ArrayList<cdata>(); -// } -// H5P_cls_create_func_t cls_create_data = new H5P_cls_create_data(); -// -// class H5P_cls_create_callback implements H5P_cls_create_func_cb { -// public int callback(long list_id, H5P_cls_create_func_t cls_data) { -// System.err.println("H5P_cls_create_callback enter"); -// cdata cd = ((H5P_cls_create_data)cls_create_data).clsdata.get(0); -// cd.cls_count++; -// cd.cls_id = list_id; -// return 0; -// } -// } -// H5P_cls_create_func_cb cls_create_cb = new H5P_cls_create_callback(); -// -// class H5P_cls_copy_data implements H5P_cls_copy_func_t { -// public ArrayList<cdata> clsdata = new ArrayList<cdata>(); -// } -// H5P_cls_copy_func_t cls_copy_data = new H5P_cls_copy_data(); -// -// class H5P_cls_copy_callback implements H5P_cls_copy_func_cb { -// public int callback(long list_id1, long list_id2, H5P_cls_copy_func_t cls_data) { -// cdata cd = ((H5P_cls_copy_data)cls_copy_data).clsdata.get(0); -// cd.cls_count++; -// cd.cls_id = list_id1; -// return 0; -// } -// } -// H5P_cls_copy_func_cb cls_copy_cb = new H5P_cls_copy_callback(); -// -// class H5P_cls_close_data implements H5P_cls_close_func_t { -// public ArrayList<cdata> clsdata = new ArrayList<cdata>(); -// } -// H5P_cls_close_func_t cls_close_data = new H5P_cls_close_data(); -// -// class H5P_cls_close_callback implements H5P_cls_close_func_cb { -// public int callback(long list_id, H5P_cls_close_func_t cls_data) { -// cdata cd = ((H5P_cls_close_data)cls_close_data).clsdata.get(0); -// cd.cls_count++; -// cd.cls_id = list_id; -// return 0; -// } -// } -// H5P_cls_close_func_cb cls_close_cb = new H5P_cls_close_callback(); -// -// long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID -// long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID -// long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID -// long lid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID -// long lid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID -// long nprops = -1; // Number of properties in class -// -// try { -// // Create a new generic class, derived from the root of the class hierarchy -// try { -// cid1 = H5.H5Pcreate_class(HDF5Constants.H5P_ROOT, CLASS1_NAME, cls_create_cb, cls_create_data, cls_copy_cb, cls_copy_data, cls_close_cb, cls_close_data); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pcreate_class cid1: " + err); -// } -// assertTrue("H5Pcreate_class cid1", cid1 >= 0); -// -// // Insert first property into class (with no callbacks) -// try { -// byte[] prop_value = HDFNativeData.intToByte(prop1_def); -// -// H5.H5Pregister2(cid1, PROP1_NAME, PROP1_SIZE, prop_value, null, null, null, null, null, null, null); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pregister2 cid1: "+PROP1_NAME + err); -// } -// -// // Insert second property into class (with no callbacks) -// try { -// byte[] prop_value = HDFNativeData.floatToByte(prop2_def); -// -// H5.H5Pregister2(cid1, PROP2_NAME, PROP2_SIZE, prop_value, null, null, null, null, null, null, null); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pregister2 cid1: "+PROP2_NAME + err); -// } -// -// // Insert third property into class (with no callbacks) -// try { -// byte[] prop_value = new String(prop3_def).getBytes(StandardCharsets.UTF_8); -// -// H5.H5Pregister2(cid1, PROP3_NAME, PROP3_SIZE, prop_value, null, null, null, null, null, null, null); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pregister2 cid1: "+PROP3_NAME + err); -// } -// -// // Check the number of properties in class -// try { -// nprops = H5.H5Pget_nprops(cid1); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pget_nprops cid1: " + err); -// } -// assertTrue("H5Pget_nprops: "+nprops, nprops==3); -// -// // Initialize class callback structs -// cdata create_id = new cdata(-1, 0); -// cdata copy_id = new cdata(-1, 0); -// cdata close_id = new cdata(-1, 0); -// ((H5P_cls_create_data)cls_create_data).clsdata.add(create_id); -// ((H5P_cls_copy_data)cls_copy_data).clsdata.add(copy_id); -// ((H5P_cls_close_data)cls_close_data).clsdata.add(close_id); -// -// // Create a property list from the class -// try { -// lid1 = H5.H5Pcreate(cid1); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pcreate lid1: " + err); -// } -// -// // Verify that the creation callback occurred -// assertFalse("H5Pcreate ",((H5P_cls_create_data)cls_create_data).clsdata.isEmpty()); -// assertTrue("H5Pcreate "+((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id ,((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id == lid1); -// assertTrue("H5Pcreate "+(((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count==1); -// -// // Check the number of properties in list -// try { -// nprops = H5.H5Pget_nprops(lid1); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pget_nprops lid1: " + err); -// } -// assertTrue("H5Pget_nprops: "+nprops, nprops==3); -// -// // Create another property list from the class -// try { -// lid2 = H5.H5Pcreate(cid1); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pcreate lid2: " + err); -// } -// -// /* Verify that the creation callback occurred */ -// assertFalse("H5Pcreate ",((H5P_cls_create_data)cls_create_data).clsdata.isEmpty()); -// assertTrue("H5Pcreate "+((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id ,((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id == lid2); -// assertTrue("H5Pcreate "+(((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count==2); -// -// // Check the number of properties in list -// try { -// nprops = H5.H5Pget_nprops(lid2); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pget_nprops lid2: " + err); -// } -// assertTrue("H5Pget_nprops: "+nprops, nprops==3); -// -// // Create another property list by copying an existing list -// try { -// lid3= H5.H5Pcopy(lid1); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pcopy lid3: " + err); -// } -// -// // Verify that the copy callback occurred -// assertFalse("H5Pcopy ",((H5P_cls_copy_data)cls_copy_data).clsdata.isEmpty()); -// assertTrue("H5Pcopy "+((H5P_cls_copy_data)cls_copy_data).clsdata.get(0).cls_id ,((H5P_cls_copy_data)cls_copy_data).clsdata.get(0).cls_id == lid3); -// assertTrue("H5Pcopy "+(((H5P_cls_copy_data)cls_copy_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_copy_data)cls_copy_data).clsdata.get(0)).cls_count==1); -// -// // Check the number of properties in list -// try { -// nprops = H5.H5Pget_nprops(lid3); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pget_nprops lid3: " + err); -// } -// assertTrue("H5Pget_nprops: "+nprops, nprops==3); -// -// // Close first list -// try { -// H5.H5Pclose(lid1); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pclose lid1: " + err); -// } -// -// /* Verify that the close callback occurred */ -// assertFalse("H5Pclose ",((H5P_cls_close_data)cls_close_data).clsdata.isEmpty()); -// assertTrue("H5Pclose "+((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id ,((H5P_cls_close_data)cls_copy_data).clsdata.get(0).cls_id == lid1); -// assertTrue("H5Pclose "+(((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_close_data)cls_copy_data).clsdata.get(0)).cls_count==1); -// -// // Close second list -// try { -// H5.H5Pclose(lid2); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pclose lid2: " + err); -// } -// -// // Verify that the close callback occurred -// assertTrue("H5Pclose "+((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id ,((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id == lid2); -// assertTrue("H5Pclose "+(((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count==2); -// -// // Close third list -// try { -// H5.H5Pclose(lid3); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("H5Pclose lid3: " + err); -// } -// -// // Verify that the close callback occurred -// assertTrue("H5Pclose "+((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id ,((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id == lid3); -// assertTrue("H5Pclose "+(((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count==3); -// } -// finally { -// if (lid3 > 0) -// try {H5.H5Pclose(lid3);} catch (Throwable err) {} -// if (lid2 > 0) -// try {H5.H5Pclose(lid2);} catch (Throwable err) {} -// if (lid1 > 0) -// try {H5.H5Pclose(lid1);} catch (Throwable err) {} -// if (cid2 > 0) -// try {H5.H5Pclose_class(cid2);} catch (Throwable err) {} -// if (cid1 > 0) -// try {H5.H5Pclose_class(cid1);} catch (Throwable err) {} -// } -// } - + // // Test basic generic property list code. Tests callbacks for property lists in a generic class. + // @Test + // public void testH5P_genprop_class_callback() { + // class cdata { + // public long cls_id = HDF5Constants.H5I_INVALID_HID; + // public int cls_count = -1; + // cdata(long id, int count) { + // this.cls_id = id; + // this.cls_count = count; + // } + // } + // class H5P_cls_create_data implements H5P_cls_create_func_t { + // public ArrayList<cdata> clsdata = new ArrayList<cdata>(); + // } + // H5P_cls_create_func_t cls_create_data = new H5P_cls_create_data(); + // + // class H5P_cls_create_callback implements H5P_cls_create_func_cb { + // public int callback(long list_id, H5P_cls_create_func_t cls_data) { + // System.err.println("H5P_cls_create_callback enter"); + // cdata cd = ((H5P_cls_create_data)cls_create_data).clsdata.get(0); + // cd.cls_count++; + // cd.cls_id = list_id; + // return 0; + // } + // } + // H5P_cls_create_func_cb cls_create_cb = new H5P_cls_create_callback(); + // + // class H5P_cls_copy_data implements H5P_cls_copy_func_t { + // public ArrayList<cdata> clsdata = new ArrayList<cdata>(); + // } + // H5P_cls_copy_func_t cls_copy_data = new H5P_cls_copy_data(); + // + // class H5P_cls_copy_callback implements H5P_cls_copy_func_cb { + // public int callback(long list_id1, long list_id2, H5P_cls_copy_func_t cls_data) { + // cdata cd = ((H5P_cls_copy_data)cls_copy_data).clsdata.get(0); + // cd.cls_count++; + // cd.cls_id = list_id1; + // return 0; + // } + // } + // H5P_cls_copy_func_cb cls_copy_cb = new H5P_cls_copy_callback(); + // + // class H5P_cls_close_data implements H5P_cls_close_func_t { + // public ArrayList<cdata> clsdata = new ArrayList<cdata>(); + // } + // H5P_cls_close_func_t cls_close_data = new H5P_cls_close_data(); + // + // class H5P_cls_close_callback implements H5P_cls_close_func_cb { + // public int callback(long list_id, H5P_cls_close_func_t cls_data) { + // cdata cd = ((H5P_cls_close_data)cls_close_data).clsdata.get(0); + // cd.cls_count++; + // cd.cls_id = list_id; + // return 0; + // } + // } + // H5P_cls_close_func_cb cls_close_cb = new H5P_cls_close_callback(); + // + // long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID + // long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID + // long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID + // long lid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID + // long lid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID + // long nprops = -1; // Number of properties in class + // + // try { + // // Create a new generic class, derived from the root of the class hierarchy + // try { + // cid1 = H5.H5Pcreate_class(HDF5Constants.H5P_ROOT, CLASS1_NAME, cls_create_cb, + // cls_create_data, cls_copy_cb, cls_copy_data, cls_close_cb, cls_close_data); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pcreate_class cid1: " + err); + // } + // assertTrue("H5Pcreate_class cid1", cid1 >= 0); + // + // // Insert first property into class (with no callbacks) + // try { + // byte[] prop_value = HDFNativeData.intToByte(prop1_def); + // + // H5.H5Pregister2(cid1, PROP1_NAME, PROP1_SIZE, prop_value, null, null, null, null, null, + // null, null); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pregister2 cid1: "+PROP1_NAME + err); + // } + // + // // Insert second property into class (with no callbacks) + // try { + // byte[] prop_value = HDFNativeData.floatToByte(prop2_def); + // + // H5.H5Pregister2(cid1, PROP2_NAME, PROP2_SIZE, prop_value, null, null, null, null, null, + // null, null); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pregister2 cid1: "+PROP2_NAME + err); + // } + // + // // Insert third property into class (with no callbacks) + // try { + // byte[] prop_value = new String(prop3_def).getBytes(StandardCharsets.UTF_8); + // + // H5.H5Pregister2(cid1, PROP3_NAME, PROP3_SIZE, prop_value, null, null, null, null, null, + // null, null); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pregister2 cid1: "+PROP3_NAME + err); + // } + // + // // Check the number of properties in class + // try { + // nprops = H5.H5Pget_nprops(cid1); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pget_nprops cid1: " + err); + // } + // assertTrue("H5Pget_nprops: "+nprops, nprops==3); + // + // // Initialize class callback structs + // cdata create_id = new cdata(-1, 0); + // cdata copy_id = new cdata(-1, 0); + // cdata close_id = new cdata(-1, 0); + // ((H5P_cls_create_data)cls_create_data).clsdata.add(create_id); + // ((H5P_cls_copy_data)cls_copy_data).clsdata.add(copy_id); + // ((H5P_cls_close_data)cls_close_data).clsdata.add(close_id); + // + // // Create a property list from the class + // try { + // lid1 = H5.H5Pcreate(cid1); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pcreate lid1: " + err); + // } + // + // // Verify that the creation callback occurred + // assertFalse("H5Pcreate ",((H5P_cls_create_data)cls_create_data).clsdata.isEmpty()); + // assertTrue("H5Pcreate "+((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id + // ,((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id == lid1); + // assertTrue("H5Pcreate + // "+(((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count==1); + // + // // Check the number of properties in list + // try { + // nprops = H5.H5Pget_nprops(lid1); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pget_nprops lid1: " + err); + // } + // assertTrue("H5Pget_nprops: "+nprops, nprops==3); + // + // // Create another property list from the class + // try { + // lid2 = H5.H5Pcreate(cid1); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pcreate lid2: " + err); + // } + // + // /* Verify that the creation callback occurred */ + // assertFalse("H5Pcreate ",((H5P_cls_create_data)cls_create_data).clsdata.isEmpty()); + // assertTrue("H5Pcreate "+((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id + // ,((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id == lid2); + // assertTrue("H5Pcreate + // "+(((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count==2); + // + // // Check the number of properties in list + // try { + // nprops = H5.H5Pget_nprops(lid2); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pget_nprops lid2: " + err); + // } + // assertTrue("H5Pget_nprops: "+nprops, nprops==3); + // + // // Create another property list by copying an existing list + // try { + // lid3= H5.H5Pcopy(lid1); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pcopy lid3: " + err); + // } + // + // // Verify that the copy callback occurred + // assertFalse("H5Pcopy ",((H5P_cls_copy_data)cls_copy_data).clsdata.isEmpty()); + // assertTrue("H5Pcopy "+((H5P_cls_copy_data)cls_copy_data).clsdata.get(0).cls_id + // ,((H5P_cls_copy_data)cls_copy_data).clsdata.get(0).cls_id == lid3); assertTrue("H5Pcopy + // "+(((H5P_cls_copy_data)cls_copy_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_copy_data)cls_copy_data).clsdata.get(0)).cls_count==1); + // + // // Check the number of properties in list + // try { + // nprops = H5.H5Pget_nprops(lid3); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pget_nprops lid3: " + err); + // } + // assertTrue("H5Pget_nprops: "+nprops, nprops==3); + // + // // Close first list + // try { + // H5.H5Pclose(lid1); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pclose lid1: " + err); + // } + // + // /* Verify that the close callback occurred */ + // assertFalse("H5Pclose ",((H5P_cls_close_data)cls_close_data).clsdata.isEmpty()); + // assertTrue("H5Pclose "+((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id + // ,((H5P_cls_close_data)cls_copy_data).clsdata.get(0).cls_id == lid1); assertTrue("H5Pclose + // "+(((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_close_data)cls_copy_data).clsdata.get(0)).cls_count==1); + // + // // Close second list + // try { + // H5.H5Pclose(lid2); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pclose lid2: " + err); + // } + // + // // Verify that the close callback occurred + // assertTrue("H5Pclose "+((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id + // ,((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id == lid2); assertTrue("H5Pclose + // "+(((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count==2); + // + // // Close third list + // try { + // H5.H5Pclose(lid3); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("H5Pclose lid3: " + err); + // } + // + // // Verify that the close callback occurred + // assertTrue("H5Pclose "+((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id + // ,((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id == lid3); assertTrue("H5Pclose + // "+(((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count==3); + // } + // finally { + // if (lid3 > 0) + // try {H5.H5Pclose(lid3);} catch (Throwable err) {} + // if (lid2 > 0) + // try {H5.H5Pclose(lid2);} catch (Throwable err) {} + // if (lid1 > 0) + // try {H5.H5Pclose(lid1);} catch (Throwable err) {} + // if (cid2 > 0) + // try {H5.H5Pclose_class(cid2);} catch (Throwable err) {} + // if (cid1 > 0) + // try {H5.H5Pclose_class(cid1);} catch (Throwable err) {} + // } + // } } diff --git a/java/test/TestH5Pvirtual.java b/java/test/TestH5Pvirtual.java index 0478356..41ae6d1 100644 --- a/java/test/TestH5Pvirtual.java +++ b/java/test/TestH5Pvirtual.java @@ -32,48 +32,47 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Pvirtual { - @Rule public TestName testname = new TestName(); - - private static final String H5_FILE = "vds.h5"; - private static final String SRC_FILE[] = { - "v-0.h5", - "v-1.h5", - "v-2.h5" - }; - private static final String SRC_DATASET[] = { - "A", - "B", - "C" - }; - private static final int DIM_Y = 6; - private static final int VDSDIM_X = 4; - private static final int VDSDIM_Y = 6; - private static final int fill_value = -1; - long[] H5dims = { DIM_Y }; - long[] VDSH5dims = { VDSDIM_X, VDSDIM_Y }; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5dssid = HDF5Constants.H5I_INVALID_HID; - long H5dvsid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - long H5dcplid = HDF5Constants.H5I_INVALID_HID; - long H5dapl_id = HDF5Constants.H5I_INVALID_HID; - - private final void _deleteFile(String filename) { + @Rule + public TestName testname = new TestName(); + + private static final String H5_FILE = "vds.h5"; + private static final String SRC_FILE[] = {"v-0.h5", "v-1.h5", "v-2.h5"}; + private static final String SRC_DATASET[] = {"A", "B", "C"}; + private static final int DIM_Y = 6; + private static final int VDSDIM_X = 4; + private static final int VDSDIM_Y = 6; + private static final int fill_value = -1; + long[] H5dims = {DIM_Y}; + long[] VDSH5dims = {VDSDIM_X, VDSDIM_Y}; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5dssid = HDF5Constants.H5I_INVALID_HID; + long H5dvsid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + long H5dcplid = HDF5Constants.H5I_INVALID_HID; + long H5dapl_id = HDF5Constants.H5I_INVALID_HID; + + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } - private final long _createDataset(long fid, long dsid, String name, long dcpl, long dapl) { - long did = HDF5Constants.H5I_INVALID_HID; + private final long _createDataset(long fid, long dsid, String name, long dcpl, long dapl) + { + long did = HDF5Constants.H5I_INVALID_HID; long space_id = HDF5Constants.H5I_INVALID_HID; - long[] start = {0, 0}; + long[] start = {0, 0}; long[] stride = null; - long[] count = {1, 1}; - long[] block = {1, VDSDIM_Y}; + long[] count = {1, 1}; + long[] block = {1, VDSDIM_Y}; try { H5dssid = H5.H5Screate_simple(1, H5dims, null); @@ -83,8 +82,8 @@ public class TestH5Pvirtual { H5.H5Sselect_hyperslab(dsid, HDF5Constants.H5S_SELECT_SET, start, stride, count, block); H5.H5Pset_virtual(dcpl, dsid, SRC_FILE[i], SRC_DATASET[i], H5dssid); } - did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_INT, dsid, - HDF5Constants.H5P_DEFAULT, dcpl, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_INT, dsid, HDF5Constants.H5P_DEFAULT, dcpl, + dapl); } catch (Throwable err) { err.printStackTrace(); @@ -95,23 +94,26 @@ public class TestH5Pvirtual { return did; } - private final void _createH5File(long fcpl, long fapl) { + private final void _createH5File(long fcpl, long fapl) + { int[] dset_data = new int[DIM_Y]; // Create source files and datasets - for (int i=0; i < 3; i++) { + for (int i = 0; i < 3; i++) { long space_id = HDF5Constants.H5I_INVALID_HID; - long dset_id = HDF5Constants.H5I_INVALID_HID; - long file_id = HDF5Constants.H5I_INVALID_HID; - for (int j = 0; j < DIM_Y; j++) dset_data[j] = i+1; + long dset_id = HDF5Constants.H5I_INVALID_HID; + long file_id = HDF5Constants.H5I_INVALID_HID; + for (int j = 0; j < DIM_Y; j++) + dset_data[j] = i + 1; try { - file_id = H5.H5Fcreate(SRC_FILE[i], HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + file_id = H5.H5Fcreate(SRC_FILE[i], HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); space_id = H5.H5Screate_simple(1, H5dims, null); - dset_id = H5.H5Dcreate(file_id, SRC_DATASET[i], HDF5Constants.H5T_NATIVE_INT, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - H5.H5Dwrite (dset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, - dset_data); + dset_id = H5.H5Dcreate(file_id, SRC_DATASET[i], HDF5Constants.H5T_NATIVE_INT, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + H5.H5Dwrite(dset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, + HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data); } catch (Throwable err) { err.printStackTrace(); @@ -119,19 +121,32 @@ public class TestH5Pvirtual { } finally { if (dset_id > 0) - try {H5.H5Dclose(dset_id);} catch (Exception ex) {} + try { + H5.H5Dclose(dset_id); + } + catch (Exception ex) { + } if (space_id > 0) - try {H5.H5Sclose(space_id);} catch (Exception ex) {} + try { + H5.H5Sclose(space_id); + } + catch (Exception ex) { + } if (file_id > 0) - try {H5.H5Fclose(file_id);} catch (Exception ex) {} + try { + H5.H5Fclose(file_id); + } + catch (Exception ex) { + } } } try { int[] fill_value = {-1}; - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - H5dsid = H5.H5Screate_simple(2, VDSH5dims, null); - H5dcplid = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + H5dsid = H5.H5Screate_simple(2, VDSH5dims, null); + H5dcplid = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE); H5.H5Pset_fill_value(H5dcplid, HDF5Constants.H5T_NATIVE_INT, fill_value); } catch (Throwable err) { @@ -151,25 +166,42 @@ public class TestH5Pvirtual { } @Before - public void createH5file() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); _createH5File(HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); assertTrue("TestH5Pvirtual.createH5file: H5.H5Pcreate: ", H5dapl_id > 0); - } + } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5dapl_id > 0) - try {H5.H5Pclose(H5dapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(H5dapl_id); + } + catch (Exception ex) { + } if (H5dcplid > 0) - try {H5.H5Pclose(H5dcplid);} catch (Exception ex) {} + try { + H5.H5Pclose(H5dcplid); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } for (int i = 0; i < 3; i++) { _deleteFile(SRC_FILE[i]); } @@ -178,12 +210,13 @@ public class TestH5Pvirtual { } @Test - public void testH5Pvirtual_storage() { + public void testH5Pvirtual_storage() + { int layout = -1; H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); try { - layout = H5.H5Pget_layout (H5dcplid); + layout = H5.H5Pget_layout(H5dcplid); } catch (Throwable err) { err.printStackTrace(); @@ -191,15 +224,24 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } assertTrue("testH5Pvirtual_storage", HDF5Constants.H5D_VIRTUAL == layout); } @Test - public void testH5Pget_virtual_count() { + public void testH5Pget_virtual_count() + { long num_map = -1; H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); @@ -212,21 +254,30 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } - assertTrue("testH5Pget_virtual_count: "+num_map, num_map >= 0); + assertTrue("testH5Pget_virtual_count: " + num_map, num_map >= 0); assertEquals(3, num_map); } @Test - public void testH5Pget_source_filename() throws Throwable { + public void testH5Pget_source_filename() throws Throwable + { String filename = null; H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); try { - filename = (H5.H5Pget_virtual_filename (H5dcplid, 2)); + filename = (H5.H5Pget_virtual_filename(H5dcplid, 2)); } catch (Throwable err) { err.printStackTrace(); @@ -234,20 +285,29 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } - assertTrue("testH5Pget_source_filename: "+filename, filename.compareTo("v-2.h5") == 0); + assertTrue("testH5Pget_source_filename: " + filename, filename.compareTo("v-2.h5") == 0); } @Test - public void testH5Pget_source_datasetname() throws Throwable { + public void testH5Pget_source_datasetname() throws Throwable + { String datasetname = null; H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); try { - datasetname = H5.H5Pget_virtual_dsetname (H5dcplid, 1); + datasetname = H5.H5Pget_virtual_dsetname(H5dcplid, 1); } catch (Throwable err) { err.printStackTrace(); @@ -255,21 +315,30 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } - assertTrue("testH5Pget_source_datasetname: "+datasetname, datasetname.compareTo("B") == 0); + assertTrue("testH5Pget_source_datasetname: " + datasetname, datasetname.compareTo("B") == 0); } @Test - public void testH5Pget_selection_source_dataset() throws Throwable { - long src_space = HDF5Constants.H5I_INVALID_HID; + public void testH5Pget_selection_source_dataset() throws Throwable + { + long src_space = HDF5Constants.H5I_INVALID_HID; long src_selection = -1; H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); try { - src_space = H5.H5Pget_virtual_srcspace (H5dcplid, 0); + src_space = H5.H5Pget_virtual_srcspace(H5dcplid, 0); src_selection = H5.H5Sget_select_type(src_space); } catch (Throwable err) { @@ -278,17 +347,30 @@ public class TestH5Pvirtual { } finally { if (src_space > 0) - try {H5.H5Sclose(src_space);} catch (Exception ex) {} + try { + H5.H5Sclose(src_space); + } + catch (Exception ex) { + } if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } assertTrue("testH5Pget_selection_source_dataset", src_selection == HDF5Constants.H5S_SEL_ALL); } @Test - public void testH5Pget_mapping_parameters() { + public void testH5Pget_mapping_parameters() + { long num_map = -1; H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); @@ -302,22 +384,22 @@ public class TestH5Pvirtual { } for (int i = 0; i < num_map; i++) { int vselection = -1; - long vspace = -1; - long nblocks; // Number of hyperslab blocks - long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks - long[] start = {i, 0}; - long[] stride = {1, 1}; - long[] count = {1, 1}; - long[] block = {1, VDSDIM_Y}; - long q_start[] = new long[2]; - long q_stride[] = new long[2]; - long q_count[] = new long[2]; - long q_block[] = new long[2]; + long vspace = -1; + long nblocks; // Number of hyperslab blocks + long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks + long[] start = {i, 0}; + long[] stride = {1, 1}; + long[] count = {1, 1}; + long[] block = {1, VDSDIM_Y}; + long q_start[] = new long[2]; + long q_stride[] = new long[2]; + long q_count[] = new long[2]; + long q_block[] = new long[2]; boolean is_regular = false; try { try { - vspace = H5.H5Pget_virtual_vspace (H5dcplid, i); + vspace = H5.H5Pget_virtual_vspace(H5dcplid, i); } catch (Throwable err) { err.printStackTrace(); @@ -330,7 +412,8 @@ public class TestH5Pvirtual { err.printStackTrace(); fail("H5.H5Sget_select_type: " + err); } - assertTrue("testH5Pget_mapping_parameters["+i+"]", vselection == HDF5Constants.H5S_SEL_HYPERSLABS); + assertTrue("testH5Pget_mapping_parameters[" + i + "]", + vselection == HDF5Constants.H5S_SEL_HYPERSLABS); // Verify that there is only one block nblocks = H5.H5Sget_select_hyper_nblocks(vspace); @@ -340,30 +423,38 @@ public class TestH5Pvirtual { H5.H5Sget_select_hyper_blocklist(vspace, 0, nblocks, blocks); // Verify that the correct block is defined - assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [0]: "+blocks[0], start[0] == blocks[0]); - assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [1]: "+blocks[1], start[1] == blocks[1]); - assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [2]: "+blocks[2], (block[0]-1+i) == blocks[2]); - assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [3]: "+blocks[3], (block[1]-1) == blocks[3]); + assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [0]: " + blocks[0], + start[0] == blocks[0]); + assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [1]: " + blocks[1], + start[1] == blocks[1]); + assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [2]: " + blocks[2], + (block[0] - 1 + i) == blocks[2]); + assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [3]: " + blocks[3], + (block[1] - 1) == blocks[3]); // We also can use new APIs to get start, stride, count and block is_regular = H5.H5Sis_regular_hyperslab(vspace); assertTrue("H5.H5Sis_regular_hyperslab", is_regular); - H5.H5Sget_regular_hyperslab (vspace, q_start, q_stride, q_count, q_block); + H5.H5Sget_regular_hyperslab(vspace, q_start, q_stride, q_count, q_block); // Verify the hyperslab parameters - for(int u = 0; u < 2; u++) { + for (int u = 0; u < 2; u++) { assertTrue("H5Sget_regular_hyperslab, start", start[u] == q_start[u]); assertTrue("H5Sget_regular_hyperslab, stride", stride[u] == q_stride[u]); assertTrue("H5Sget_regular_hyperslab, count", count[u] == q_count[u]); assertTrue("H5Sget_regular_hyperslab, block", block[u] == q_block[u]); } - } + } catch (Throwable err) { err.printStackTrace(); fail("H5.testH5Pget_mapping_parameters: " + err); } finally { if (vspace > 0) - try {H5.H5Sclose(vspace);} catch (Exception ex) {} + try { + H5.H5Sclose(vspace); + } + catch (Exception ex) { + } } } } @@ -373,16 +464,25 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } } @Test - public void testH5Pset_get_virtual_view() { + public void testH5Pset_get_virtual_view() + { int ret_val = -1; - H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); + H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); try { ret_val = H5.H5Pget_virtual_view(H5dapl_id); assertTrue("H5Pget_virtual_view", ret_val >= 0); @@ -398,16 +498,25 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } } @Test - public void testH5Pset_get_virtual_printf_gap() { + public void testH5Pset_get_virtual_printf_gap() + { long ret_val = -1; - H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); + H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); try { ret_val = H5.H5Pget_virtual_printf_gap(H5dapl_id); assertTrue("H5Pget_virtual_printf_gap", ret_val >= 0); @@ -423,14 +532,23 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } } @Test - public void testH5Pset_virtual_prefix() { + public void testH5Pset_virtual_prefix() + { String prefix = "tmp"; try { H5.H5Pset_virtual_prefix(H5dapl_id, prefix); @@ -442,14 +560,16 @@ public class TestH5Pvirtual { } @Test(expected = NullPointerException.class) - public void testH5Pset_virtual_prefix_null() throws Throwable{ + public void testH5Pset_virtual_prefix_null() throws Throwable + { H5.H5Pset_virtual_prefix(H5dapl_id, null); } @Test - public void testH5Pget_virtual_prefix() { + public void testH5Pget_virtual_prefix() + { String prefix = "tmp"; - String pre = ""; + String pre = ""; try { H5.H5Pset_virtual_prefix(H5dapl_id, prefix); diff --git a/java/test/TestH5R.java b/java/test/TestH5R.java index 031b8e4..4e610bc 100644 --- a/java/test/TestH5R.java +++ b/java/test/TestH5R.java @@ -23,8 +23,8 @@ import java.io.File; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5Exception; -import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException; +import hdf.hdf5lib.exceptions.HDF5LibraryException; import org.junit.After; import org.junit.Before; @@ -34,38 +34,46 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5R { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "testH5R.h5"; - private static final int DIM_X = 4; - private static final int DIM_Y = 6; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - long H5gid = HDF5Constants.H5I_INVALID_HID; - long H5did2 = HDF5Constants.H5I_INVALID_HID; - long[] H5dims = { DIM_X, DIM_Y }; - int[][] dset_data = new int[DIM_X][DIM_Y]; - int FILLVAL = 99; - - private final void _deleteFile(String filename) { + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + long H5gid = HDF5Constants.H5I_INVALID_HID; + long H5did2 = HDF5Constants.H5I_INVALID_HID; + long[] H5dims = {DIM_X, DIM_Y}; + int[][] dset_data = new int[DIM_X][DIM_Y]; + int FILLVAL = 99; + + private final void _deleteFile(String filename) + { File file = null; try { file = new File(filename); } - catch (Throwable err) {} + catch (Throwable err) { + } if (file.exists()) { - try {file.delete();} catch (SecurityException e) {e.printStackTrace();} + try { + file.delete(); + } + catch (SecurityException e) { + e.printStackTrace(); + } } assertFalse("TestH5R._deleteFile file still exists ", file.exists()); } - private final long _createDataset(long fid, long dsid, String name, long dapl) { + private final long _createDataset(long fid, long dsid, String name, long dapl) + { long did = HDF5Constants.H5I_INVALID_HID; try { - did = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -76,34 +84,35 @@ public class TestH5R { return did; } - private final long _createGroup(long fid, String name) { + private final long _createGroup(long fid, String name) + { long gid = HDF5Constants.H5I_INVALID_HID; try { - gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Gcreate: " + err); } - assertTrue("TestH5R._createGroup: ",gid > 0); + assertTrue("TestH5R._createGroup: ", gid > 0); return gid; } @Before - public void createH5file() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5dsid = H5.H5Screate_simple(2, H5dims, null); - H5gid = _createGroup(H5fid, "Group1"); + H5gid = _createGroup(H5fid, "Group1"); H5did2 = _createDataset(H5gid, H5dsid, "dset2", HDF5Constants.H5P_DEFAULT); - H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); + H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); // Initialize the dataset. for (int indx = 0; indx < DIM_X; indx++) @@ -112,38 +121,57 @@ public class TestH5R { try { if (H5did >= 0) - H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data[0]); + H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, + HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data[0]); } catch (Exception e) { e.printStackTrace(); } - } catch (Throwable err) { err.printStackTrace(); fail("TestH5R.createH5file: " + err); } - assertTrue("TestH5R.createH5file: H5.H5Fcreate: ",H5fid > 0); - assertTrue("TestH5R.createH5file: H5.H5Screate_simple: ",H5dsid > 0); - assertTrue("TestH5R.createH5file: _createDataset: ",H5did > 0); + assertTrue("TestH5R.createH5file: H5.H5Fcreate: ", H5fid > 0); + assertTrue("TestH5R.createH5file: H5.H5Screate_simple: ", H5dsid > 0); + assertTrue("TestH5R.createH5file: _createDataset: ", H5did > 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } if (H5gid > 0) - try {H5.H5Gclose(H5gid);} catch (Exception ex) {} + try { + H5.H5Gclose(H5gid); + } + catch (Exception ex) { + } if (H5did2 > 0) - try {H5.H5Dclose(H5did2);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did2); + } + catch (Exception ex) { + } _deleteFile(H5_FILE); System.out.println(); @@ -152,11 +180,12 @@ public class TestH5R { // Test v1.12 APIs params @Test - public void testH5Rget_object() { - int ref_type = HDF5Constants.H5R_OBJECT2; - long ret_val = -1; - byte[] ref = null; - String name = ""; + public void testH5Rget_object() + { + int ref_type = HDF5Constants.H5R_OBJECT2; + long ret_val = -1; + byte[] ref = null; + String name = ""; String objName = "/dset"; try { @@ -197,9 +226,10 @@ public class TestH5R { } @Test - public void testH5Rget_obj_type3() { - int obj_type = -1; - byte[] ref = null; + public void testH5Rget_obj_type3() + { + int obj_type = -1; + byte[] ref = null; String objName = "/dset"; try { @@ -222,13 +252,14 @@ public class TestH5R { } @Test - public void testH5Rcreate_regionref_object() { - byte[] ref = null; + public void testH5Rcreate_regionref_object() + { + byte[] ref = null; String objName = "/dset"; - long start[] = {2,2}; // Starting location of hyperslab - long stride[] = {1,1}; // Stride of hyperslab - long count[] = {1,1}; // Element count of hyperslab - long block[] = {3,3}; // Block size of hyperslab + long start[] = {2, 2}; // Starting location of hyperslab + long stride[] = {1, 1}; // Stride of hyperslab + long count[] = {1, 1}; // Element count of hyperslab + long block[] = {3, 3}; // Block size of hyperslab // Select 3x3 hyperslab for reference try { @@ -249,235 +280,252 @@ public class TestH5R { H5.H5Rdestroy(ref); } -// These tests need to be updated with new APIs -// @Test// -// public void testH5Rget_group() { -// long loc_id = H5fid; -// int ref_type = HDF5Constants.H5R_OBJECT2; -// long ret_val = -1; -// byte[] ref = null; -// String name = ""; -// String objName = "/dset"; -// -// try { -// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("testH5Rget_object: H5Rcreate_object " + err); -// } -// try { -// dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1); -// -// //Create reference on group -// ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); -// group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2); -// assertNotNull(ref1); -// assertNotNull(ref2); -// assertTrue(dataset_id >= 0); -// assertTrue(group_id >= 0); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("TestH5Rdereference " + err); -// } -// finally { -// try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} -// try {H5.H5Gclose(group_id);} catch (Exception ex) {} -// } -// } - -// @Test// -// public void testH5Rget_region_dataset() { -// long loc_id = H5fid; -// int ref_type = HDF5Constants.H5R_OBJECT2; -// long ret_val = -1; -// byte[] ref = null; -// String name = ""; -// String objName = "/dset"; -// -// try { -// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("testH5Rget_object: H5Rcreate_object " + err); -// } -// try { -// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); -// assertNotNull(ref); -// assertTrue(dsid >= 0); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("TestH5Rget_region: " + err); -// } -// finally { -// try {H5.H5Sclose(dsid);} catch (Exception ex) {} -// } -// } - -// @Test// -// public void testH5Rget_attr() { -// long loc_id = H5fid; -// int ref_type = HDF5Constants.H5R_OBJECT2; -// long ret_val = -1; -// byte[] ref = null; -// String name = ""; -// String objName = "/dset"; -// -// try { -// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("testH5Rget_object: H5Rcreate_object " + err); -// } -// try { -// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); -// assertNotNull(ref); -// assertTrue(dsid >= 0); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("TestH5Rget_region: " + err); -// } -// finally { -// try {H5.H5Sclose(dsid);} catch (Exception ex) {} -// } -// } + // These tests need to be updated with new APIs + // @Test// + // public void testH5Rget_group() { + // long loc_id = H5fid; + // int ref_type = HDF5Constants.H5R_OBJECT2; + // long ret_val = -1; + // byte[] ref = null; + // String name = ""; + // String objName = "/dset"; + // + // try { + // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("testH5Rget_object: H5Rcreate_object " + err); + // } + // try { + // dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, + // HDF5Constants.H5R_DATASET_REGION, ref1); + // + // //Create reference on group + // ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); + // group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, + // ref2); assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id >= 0); + // assertTrue(group_id >= 0); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("TestH5Rdereference " + err); + // } + // finally { + // try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} + // try {H5.H5Gclose(group_id);} catch (Exception ex) {} + // } + // } + + // @Test// + // public void testH5Rget_region_dataset() { + // long loc_id = H5fid; + // int ref_type = HDF5Constants.H5R_OBJECT2; + // long ret_val = -1; + // byte[] ref = null; + // String name = ""; + // String objName = "/dset"; + // + // try { + // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("testH5Rget_object: H5Rcreate_object " + err); + // } + // try { + // dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); + // assertNotNull(ref); + // assertTrue(dsid >= 0); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("TestH5Rget_region: " + err); + // } + // finally { + // try {H5.H5Sclose(dsid);} catch (Exception ex) {} + // } + // } + + // @Test// + // public void testH5Rget_attr() { + // long loc_id = H5fid; + // int ref_type = HDF5Constants.H5R_OBJECT2; + // long ret_val = -1; + // byte[] ref = null; + // String name = ""; + // String objName = "/dset"; + // + // try { + // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("testH5Rget_object: H5Rcreate_object " + err); + // } + // try { + // dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); + // assertNotNull(ref); + // assertTrue(dsid >= 0); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("TestH5Rget_region: " + err); + // } + // finally { + // try {H5.H5Sclose(dsid);} catch (Exception ex) {} + // } + // } // Test parameters to H5Rcreate_object @Test(expected = NullPointerException.class) - public void testH5Rcreate_object_Nullname() throws Throwable { + public void testH5Rcreate_object_Nullname() throws Throwable + { String name = null; H5.H5Rcreate_object(H5fid, name, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5FunctionArgumentException.class) - public void testH5Rget_name_Invalidloc() throws Throwable { - String name= ""; + public void testH5Rget_name_Invalidloc() throws Throwable + { + String name = ""; H5.H5Rcreate_object(-1, name, HDF5Constants.H5P_DEFAULT); } // Test parameters to H5Rcreate_region @Test(expected = NullPointerException.class) - public void testH5Rcreate_region_Nullname() throws Throwable { + public void testH5Rcreate_region_Nullname() throws Throwable + { String name = null; H5.H5Rcreate_region(H5fid, name, -1, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5FunctionArgumentException.class) - public void testH5Rcreate_region_Invalidloc() throws Throwable { - String name= ""; + public void testH5Rcreate_region_Invalidloc() throws Throwable + { + String name = ""; H5.H5Rcreate_region(-1, name, -1, HDF5Constants.H5P_DEFAULT); } // Test parameters to H5Rcreate_attr @Test(expected = NullPointerException.class) - public void testH5Rcreate_attr_Nullname() throws Throwable { - String name = null; + public void testH5Rcreate_attr_Nullname() throws Throwable + { + String name = null; String attrname = ""; H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT); } @Test(expected = NullPointerException.class) - public void testH5Rcreate_attr_Nullattrname() throws Throwable { - String name = ""; + public void testH5Rcreate_attr_Nullattrname() throws Throwable + { + String name = ""; String attrname = null; H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5FunctionArgumentException.class) - public void testH5Rcreate_attr_Invalidloc() throws Throwable { - String name= ""; - String attrname= ""; + public void testH5Rcreate_attr_Invalidloc() throws Throwable + { + String name = ""; + String attrname = ""; H5.H5Rcreate_attr(-1, name, attrname, HDF5Constants.H5P_DEFAULT); } // Test parameters to H5Rdestroy @Test(expected = NullPointerException.class) - public void testH5Rdestroy_Nullref() throws Throwable { + public void testH5Rdestroy_Nullref() throws Throwable + { byte[] ref = null; H5.H5Rdestroy(ref); } // Test parameters to H5Rget_type @Test(expected = NullPointerException.class) - public void testH5Rget_type_Nullref() throws Throwable { + public void testH5Rget_type_Nullref() throws Throwable + { byte[] ref = null; H5.H5Rget_type(ref); } // Test parameters to H5Requal @Test(expected = NullPointerException.class) - public void testH5Requal_Nullref1() throws Throwable { + public void testH5Requal_Nullref1() throws Throwable + { byte[] ref1 = null; - byte[] ref2 = {0,0,0,0}; + byte[] ref2 = {0, 0, 0, 0}; H5.H5Requal(ref1, ref2); } @Test(expected = NullPointerException.class) - public void testH5Requal_Nullref2() throws Throwable { - byte[] ref1 = {0,0,0,0}; + public void testH5Requal_Nullref2() throws Throwable + { + byte[] ref1 = {0, 0, 0, 0}; byte[] ref2 = null; H5.H5Requal(ref1, ref2); } // Test parameters to H5Rcopy @Test(expected = NullPointerException.class) - public void testH5Rcopy_Nullref1() throws Throwable { + public void testH5Rcopy_Nullref1() throws Throwable + { byte[] ref1 = null; byte[] ref2 = H5.H5Rcopy(ref1); } // Test parameters to H5Ropen_object @Test(expected = NullPointerException.class) - public void testH5Ropen_object_Nullref() throws Throwable { + public void testH5Ropen_object_Nullref() throws Throwable + { byte[] ref = null; H5.H5Ropen_object(ref, -1, -1); } // Test parameters to H5Ropen_region @Test(expected = NullPointerException.class) - public void testH5Ropen_region_Nullref() throws Throwable { + public void testH5Ropen_region_Nullref() throws Throwable + { byte[] ref = null; H5.H5Ropen_region(ref, -1, -1); } // Test parameters to H5Ropen_attr @Test(expected = NullPointerException.class) - public void testH5Ropen_attr_Nullref() throws Throwable { + public void testH5Ropen_attr_Nullref() throws Throwable + { byte[] ref = null; H5.H5Ropen_attr(ref, -1, -1); } // Test parameters to H5Rget_obj_type3 @Test(expected = NullPointerException.class) - public void testH5Rget_obj_type3_Nullref() throws Throwable { + public void testH5Rget_obj_type3_Nullref() throws Throwable + { byte[] ref = null; H5.H5Rget_obj_type3(ref, -1); } // Test parameters to H5Rget_file_name @Test(expected = NullPointerException.class) - public void testH5Rget_file_name_Nullref() throws Throwable { + public void testH5Rget_file_name_Nullref() throws Throwable + { byte[] ref = null; H5.H5Rget_file_name(ref); } // Test parameters to H5Rget_obj_name @Test(expected = NullPointerException.class) - public void testH5Rget_obj_name_Nullref() throws Throwable { + public void testH5Rget_obj_name_Nullref() throws Throwable + { byte[] ref = null; H5.H5Rget_obj_name(ref, -1); } // Test parameters to H5Rget_attr_name @Test(expected = NullPointerException.class) - public void testH5Rget_attr_name_Nullref() throws Throwable { + public void testH5Rget_attr_name_Nullref() throws Throwable + { byte[] ref = null; H5.H5Rget_attr_name(ref); } - } diff --git a/java/test/TestH5Rref.java b/java/test/TestH5Rref.java index 5733aae..520de74 100644 --- a/java/test/TestH5Rref.java +++ b/java/test/TestH5Rref.java @@ -23,8 +23,8 @@ import java.io.File; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5Exception; -import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException; +import hdf.hdf5lib.exceptions.HDF5LibraryException; import org.junit.After; import org.junit.Before; @@ -34,14 +34,16 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Rref { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_DREG_FILE = "trefer_reg.h5"; private static final String H5_AREG_FILE = "trefer_attr.h5"; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; - private boolean byteArrayCheck(final byte[] array) { + private boolean byteArrayCheck(final byte[] array) + { for (byte b : array) { if (b != 0) { return false; @@ -50,67 +52,81 @@ public class TestH5Rref { return true; } - public void openH5file(String filename, String dsetname) { - try { - H5fid = H5.H5Fopen(filename, - HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5R._openH5file: " + err); - } - assertTrue("TestH5R._openH5file: H5.H5Fopen: ", H5fid >= 0); - try { - H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5R._openH5file: " + err); - } - assertTrue("TestH5R._openH5file: H5.H5Dopen: ", H5did >= 0); - try { - H5dsid = H5.H5Dget_space(H5did); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5R._openH5file: " + err); - } - assertTrue("TestH5R._openH5file: H5.H5Screate_simple: ",H5dsid > 0); + public void openH5file(String filename, String dsetname) + { + try { + H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5R._openH5file: " + err); + } + assertTrue("TestH5R._openH5file: H5.H5Fopen: ", H5fid >= 0); + try { + H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5R._openH5file: " + err); + } + assertTrue("TestH5R._openH5file: H5.H5Dopen: ", H5did >= 0); + try { + H5dsid = H5.H5Dget_space(H5did); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5R._openH5file: " + err); + } + assertTrue("TestH5R._openH5file: H5.H5Screate_simple: ", H5dsid > 0); } @After - public void closeH5file() throws HDF5LibraryException { + public void closeH5file() throws HDF5LibraryException + { if (H5did >= 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} - H5fid = HDF5Constants.H5I_INVALID_HID; + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } + H5fid = HDF5Constants.H5I_INVALID_HID; H5dsid = HDF5Constants.H5I_INVALID_HID; - H5did = HDF5Constants.H5I_INVALID_HID; + H5did = HDF5Constants.H5I_INVALID_HID; System.out.println(); } @Before - public void verifyCount() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0); + public void verifyCount() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } // Test v1.12 APIs params @Test - public void testH5Rget_object() { - int ref_type = HDF5Constants.H5R_OBJECT1; - long f_type = HDF5Constants.H5I_INVALID_HID; - int obj_type = -1; - int ndims = 1; - long ret_val = -1; + public void testH5Rget_object() + { + int ref_type = HDF5Constants.H5R_OBJECT1; + long f_type = HDF5Constants.H5I_INVALID_HID; + int obj_type = -1; + int ndims = 1; + long ret_val = -1; byte[][] refbuf = null; - String name = ""; - String objName = "/DS_NA"; + String name = ""; + String objName = "/DS_NA"; try { openH5file(H5_DREG_FILE, objName); @@ -120,18 +136,22 @@ public class TestH5Rref { fail("testH5Rget_object: openH5file: " + err); } try { - f_type = H5.H5Dget_type(H5did); + f_type = H5.H5Dget_type(H5did); int result = H5.H5Tget_class(f_type); assertTrue("testH5Rget_object: H5Tget_class", result > 0); String class_name = H5.H5Tget_class_name(result); - assertTrue("testH5Rget_object: H5Tget_class", class_name.compareTo("H5T_REFERENCE")==0); + assertTrue("testH5Rget_object: H5Tget_class", class_name.compareTo("H5T_REFERENCE") == 0); } catch (Throwable err) { err.printStackTrace(); fail("testH5Rget_object: " + err); } finally { - try {H5.H5Tclose(f_type);} catch (Exception ex) {} + try { + H5.H5Tclose(f_type); + } + catch (Exception ex) { + } } try { ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid); @@ -143,9 +163,8 @@ public class TestH5Rref { refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE]; // Read the reference from the dataset. try { - H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, refbuf); + H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, refbuf); } catch (Exception err) { err.printStackTrace(); @@ -155,7 +174,7 @@ public class TestH5Rref { for (int i = 0; i < ndims; i++) { try { ret_val = H5.H5Rget_type(refbuf[i]); - assertTrue("testH5Rget_object: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type); + assertTrue("testH5Rget_object: H5Rget_type[" + i + "]=" + ret_val, ret_val == ref_type); if (!byteArrayCheck(refbuf[i])) { try { obj_type = H5.H5Rget_obj_type3(refbuf[i], HDF5Constants.H5P_DEFAULT); @@ -178,14 +197,15 @@ public class TestH5Rref { } @Test - public void testH5Rget_obj_type3() { - long f_type = HDF5Constants.H5I_INVALID_HID; - int ref_type = HDF5Constants.H5R_DATASET_REGION2; - int obj_type = -1; - int ndims = 1; - long ret_val = -1; + public void testH5Rget_obj_type3() + { + long f_type = HDF5Constants.H5I_INVALID_HID; + int ref_type = HDF5Constants.H5R_DATASET_REGION2; + int obj_type = -1; + int ndims = 1; + long ret_val = -1; byte[][] refbuf = null; - String objName = "/Dataset1"; + String objName = "/Dataset1"; try { openH5file(H5_DREG_FILE, objName); @@ -195,18 +215,23 @@ public class TestH5Rref { fail("testH5Rget_obj_type3: openH5file: " + err); } try { - f_type = H5.H5Dget_type(H5did); + f_type = H5.H5Dget_type(H5did); int result = H5.H5Tget_class(f_type); assertTrue("testH5Rget_obj_type3: H5Tget_class", result > 0); String class_name = H5.H5Tget_class_name(result); - assertTrue("testH5Rget_obj_type3: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0); + assertTrue("testH5Rget_obj_type3: H5Tget_class=" + class_name, + class_name.compareTo("H5T_REFERENCE") == 0); } catch (Throwable err) { err.printStackTrace(); fail("testH5Rget_obj_type3: " + err); } finally { - try {H5.H5Tclose(f_type);} catch (Exception ex) {} + try { + H5.H5Tclose(f_type); + } + catch (Exception ex) { + } } try { ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid); @@ -218,9 +243,8 @@ public class TestH5Rref { refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE]; // Read the reference from the dataset. try { - H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, refbuf); + H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, refbuf); } catch (Exception err) { err.printStackTrace(); @@ -230,7 +254,7 @@ public class TestH5Rref { for (int i = 0; i < ndims; i++) { try { ret_val = H5.H5Rget_type(refbuf[i]); - assertTrue("testH5Rget_obj_type3: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type); + assertTrue("testH5Rget_obj_type3: H5Rget_type[" + i + "]=" + ret_val, ret_val == ref_type); if (!byteArrayCheck(refbuf[i])) { try { obj_type = H5.H5Rget_obj_type3(refbuf[i], HDF5Constants.H5P_DEFAULT); @@ -252,312 +276,341 @@ public class TestH5Rref { } } - @Test - public void testH5Rget_region_dataset() { - long f_type = HDF5Constants.H5I_INVALID_HID; - long loc_id = HDF5Constants.H5I_INVALID_HID; - long loc_sid = HDF5Constants.H5I_INVALID_HID; - int ref_type = HDF5Constants.H5R_DATASET_REGION2; - int ndims = 1; - long ret_val = -1; - byte[][] refbuf = null; - String name = ""; - String objName = "/Dataset1"; - - try { - openH5file(H5_DREG_FILE, objName); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_dataset: openH5file: " + err); - } - try { - f_type = H5.H5Dget_type(H5did); - int result = H5.H5Tget_class(f_type); - assertTrue("testH5Rget_region_dataset: H5Tget_class", result > 0); - String class_name = H5.H5Tget_class_name(result); - assertTrue("testH5Rget_region_dataset: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_dataset: " + err); - } - finally { - try {H5.H5Tclose(f_type);} catch (Exception ex) {} - } - try { - ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_dataset: H5Sget_simple_extent_ndims: " + err); - } - refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE]; - // Read the reference from the dataset. - try { - H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, refbuf); - } - catch (Exception err) { - err.printStackTrace(); - fail("testH5Rget_obj_type3: H5Dread: " + err); - } - for (int i = 0; i < ndims; i++) { - try { - try { - ret_val = H5.H5Rget_type(refbuf[i]); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_dataset: H5Rget_type["+i+"]: " + err); - } - assertTrue("testH5Rget_region_dataset: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type); - try { - loc_id = H5.H5Ropen_object(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - assertTrue(loc_id >= 0); - try { - loc_sid = H5.H5Ropen_region(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - assertTrue(loc_sid >= 0); - int region_type = -1; - try { - int reg_ndims = H5.H5Sget_simple_extent_ndims(loc_sid); - region_type = H5.H5Sget_select_type(loc_sid); - if (i == 1) - assertTrue(region_type == HDF5Constants.H5S_SEL_POINTS); - else - assertTrue(region_type == HDF5Constants.H5S_SEL_HYPERSLABS); - if (region_type == HDF5Constants.H5S_SEL_POINTS) { - long reg_npoints = H5.H5Sget_select_elem_npoints(loc_sid); - // Coordinates for get point selection - long getcoord[] = new long[reg_ndims * (int)reg_npoints]; - // Known coordinates for point selection - long coord[][] = {{6,9},{2,2},{8,4},{1,6},{2,8},{3,2}, - {0,4},{9,0},{7,1},{3,3}}; - try { - H5.H5Sget_select_elem_pointlist(loc_sid, 0, reg_npoints, getcoord); - assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][0] == getcoord[0]); - assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][1] == getcoord[1]); - assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][0] == getcoord[2]); - assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][1] == getcoord[3]); - assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][0] == getcoord[4]); - assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][1] == getcoord[5]); - } - catch (Throwable err3) { - err3.printStackTrace(); - fail("H5.H5Sget_select_elem_pointlist: " + err3); - } - } - else if (region_type == HDF5Constants.H5S_SEL_HYPERSLABS) { - long reg_nblocks = H5.H5Sget_select_hyper_nblocks(loc_sid); - assertTrue("H5Sget_select_hyper_nblocks", reg_nblocks == 1); - // Coordinates for get block selection - long getblocks[] = new long[reg_ndims * (int)reg_nblocks * 2]; - long start[] = {2,2}; - long block[] = {8,8}; - try { - H5.H5Sget_select_hyper_blocklist(loc_sid, 0, reg_nblocks, getblocks); - assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == getblocks[0]); - assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == getblocks[1]); - assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0]-1) == getblocks[2]); - assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1]-1) == getblocks[3]); - } - catch (Throwable err3) { - err3.printStackTrace(); - fail("H5.H5Sget_select_hyper_blocklist: " + err3); - } - } - } - catch (Throwable err2) { - err2.printStackTrace(); - assertTrue("testH5Rget_region_dataset: H5Sget_select_type: " + err2, i > 1); - } - } - catch (Throwable err1) { - err1.printStackTrace(); - fail("testH5Rget_region_dataset: " + err1); - } - finally { - try {H5.H5Sclose(loc_sid);} catch (Exception ex) {} - } - } - catch (Throwable err0) { - err0.printStackTrace(); - fail("testH5Rget_region_dataset: " + err0); - } - finally { - try {H5.H5Dclose(loc_id);} catch (Exception ex) {} - } - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_dataset: H5Rget_type: " + err); - } - finally { - H5.H5Rdestroy(refbuf[i]); - } - } //for (int i = 0; i < ndims; i++) - } - - @Test - public void testH5Rget_region_attribute() { - long f_type = HDF5Constants.H5I_INVALID_HID; - long loc_id = HDF5Constants.H5I_INVALID_HID; - long loc_sid = HDF5Constants.H5I_INVALID_HID; - int ref_type = HDF5Constants.H5R_ATTR; - int obj_type = -1; - int ndims = 1; - long ret_val = -1; - byte[][] refbuf = null; - String objName = "/Dataset3"; + @Test + public void testH5Rget_region_dataset() + { + long f_type = HDF5Constants.H5I_INVALID_HID; + long loc_id = HDF5Constants.H5I_INVALID_HID; + long loc_sid = HDF5Constants.H5I_INVALID_HID; + int ref_type = HDF5Constants.H5R_DATASET_REGION2; + int ndims = 1; + long ret_val = -1; + byte[][] refbuf = null; + String name = ""; + String objName = "/Dataset1"; - try { - openH5file(H5_AREG_FILE, objName); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_attribute: openH5file: " + err); - } - try { - f_type = H5.H5Dget_type(H5did); - int result = H5.H5Tget_class(f_type); - assertTrue("testH5Rget_region_attribute: H5Tget_class", result > 0); - String class_name = H5.H5Tget_class_name(result); - assertTrue("testH5Rget_region_attribute: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_attribute: " + err); - } - finally { - try {H5.H5Tclose(f_type);} catch (Exception ex) {} - } - try { - ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_attribute: H5Sget_simple_extent_ndims: " + err); - } - refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE]; - // Read the reference from the dataset. - try { - H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, refbuf); - } - catch (Exception err) { - err.printStackTrace(); - fail("testH5Rget_region_attribute: H5Dread: " + err); - } + try { + openH5file(H5_DREG_FILE, objName); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_dataset: openH5file: " + err); + } + try { + f_type = H5.H5Dget_type(H5did); + int result = H5.H5Tget_class(f_type); + assertTrue("testH5Rget_region_dataset: H5Tget_class", result > 0); + String class_name = H5.H5Tget_class_name(result); + assertTrue("testH5Rget_region_dataset: H5Tget_class=" + class_name, + class_name.compareTo("H5T_REFERENCE") == 0); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_dataset: " + err); + } + finally { + try { + H5.H5Tclose(f_type); + } + catch (Exception ex) { + } + } + try { + ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_dataset: H5Sget_simple_extent_ndims: " + err); + } + refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE]; + // Read the reference from the dataset. + try { + H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, refbuf); + } + catch (Exception err) { + err.printStackTrace(); + fail("testH5Rget_obj_type3: H5Dread: " + err); + } + for (int i = 0; i < ndims; i++) { + try { + try { + ret_val = H5.H5Rget_type(refbuf[i]); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_dataset: H5Rget_type[" + i + "]: " + err); + } + assertTrue("testH5Rget_region_dataset: H5Rget_type[" + i + "]=" + ret_val, + ret_val == ref_type); + try { + loc_id = + H5.H5Ropen_object(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue(loc_id >= 0); + try { + loc_sid = H5.H5Ropen_region(refbuf[i], HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + assertTrue(loc_sid >= 0); + int region_type = -1; + try { + int reg_ndims = H5.H5Sget_simple_extent_ndims(loc_sid); + region_type = H5.H5Sget_select_type(loc_sid); + if (i == 1) + assertTrue(region_type == HDF5Constants.H5S_SEL_POINTS); + else + assertTrue(region_type == HDF5Constants.H5S_SEL_HYPERSLABS); + if (region_type == HDF5Constants.H5S_SEL_POINTS) { + long reg_npoints = H5.H5Sget_select_elem_npoints(loc_sid); + // Coordinates for get point selection + long getcoord[] = new long[reg_ndims * (int)reg_npoints]; + // Known coordinates for point selection + long coord[][] = {{6, 9}, {2, 2}, {8, 4}, {1, 6}, {2, 8}, + {3, 2}, {0, 4}, {9, 0}, {7, 1}, {3, 3}}; + try { + H5.H5Sget_select_elem_pointlist(loc_sid, 0, reg_npoints, getcoord); + assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][0] == getcoord[0]); + assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][1] == getcoord[1]); + assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][0] == getcoord[2]); + assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][1] == getcoord[3]); + assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][0] == getcoord[4]); + assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][1] == getcoord[5]); + } + catch (Throwable err3) { + err3.printStackTrace(); + fail("H5.H5Sget_select_elem_pointlist: " + err3); + } + } + else if (region_type == HDF5Constants.H5S_SEL_HYPERSLABS) { + long reg_nblocks = H5.H5Sget_select_hyper_nblocks(loc_sid); + assertTrue("H5Sget_select_hyper_nblocks", reg_nblocks == 1); + // Coordinates for get block selection + long getblocks[] = new long[reg_ndims * (int)reg_nblocks * 2]; + long start[] = {2, 2}; + long block[] = {8, 8}; + try { + H5.H5Sget_select_hyper_blocklist(loc_sid, 0, reg_nblocks, getblocks); + assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == getblocks[0]); + assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == getblocks[1]); + assertTrue("H5.H5Sget_select_hyper_blocklist", + (block[0] - 1) == getblocks[2]); + assertTrue("H5.H5Sget_select_hyper_blocklist", + (block[1] - 1) == getblocks[3]); + } + catch (Throwable err3) { + err3.printStackTrace(); + fail("H5.H5Sget_select_hyper_blocklist: " + err3); + } + } + } + catch (Throwable err2) { + err2.printStackTrace(); + assertTrue("testH5Rget_region_dataset: H5Sget_select_type: " + err2, i > 1); + } + } + catch (Throwable err1) { + err1.printStackTrace(); + fail("testH5Rget_region_dataset: " + err1); + } + finally { + try { + H5.H5Sclose(loc_sid); + } + catch (Exception ex) { + } + } + } + catch (Throwable err0) { + err0.printStackTrace(); + fail("testH5Rget_region_dataset: " + err0); + } + finally { + try { + H5.H5Dclose(loc_id); + } + catch (Exception ex) { + } + } + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_dataset: H5Rget_type: " + err); + } + finally { + H5.H5Rdestroy(refbuf[i]); + } + } // for (int i = 0; i < ndims; i++) + } - for (int i = 0; i < ndims; i++) { - try { - ret_val = H5.H5Rget_type(refbuf[i]); - assertTrue("testH5Rget_region_attribute: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type); - try { - loc_id = H5.H5Ropen_attr(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - assertTrue(loc_id >= 0); - if (!byteArrayCheck(refbuf[i])) { - try { - loc_sid = H5.H5Aget_space(loc_id); - assertTrue(loc_sid >= 0); - } - catch (Throwable err1) { - err1.printStackTrace(); - fail("testH5Rget_region_attribute: " + err1); - } - finally { - try {H5.H5Sclose(loc_sid);} catch (Exception ex) {} - } - } - } - catch (Throwable err0) { - err0.printStackTrace(); - // second attribute is null - assertTrue("testH5Rget_region_attribute: " + err0, i == 1); - } - finally { - try {H5.H5Aclose(loc_id);} catch (Exception ex) {} - } - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_attribute: H5Rget_type: " + err); - } - finally { - H5.H5Rdestroy(refbuf[i]); - } - } - } + @Test + public void testH5Rget_region_attribute() + { + long f_type = HDF5Constants.H5I_INVALID_HID; + long loc_id = HDF5Constants.H5I_INVALID_HID; + long loc_sid = HDF5Constants.H5I_INVALID_HID; + int ref_type = HDF5Constants.H5R_ATTR; + int obj_type = -1; + int ndims = 1; + long ret_val = -1; + byte[][] refbuf = null; + String objName = "/Dataset3"; + try { + openH5file(H5_AREG_FILE, objName); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_attribute: openH5file: " + err); + } + try { + f_type = H5.H5Dget_type(H5did); + int result = H5.H5Tget_class(f_type); + assertTrue("testH5Rget_region_attribute: H5Tget_class", result > 0); + String class_name = H5.H5Tget_class_name(result); + assertTrue("testH5Rget_region_attribute: H5Tget_class=" + class_name, + class_name.compareTo("H5T_REFERENCE") == 0); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_attribute: " + err); + } + finally { + try { + H5.H5Tclose(f_type); + } + catch (Exception ex) { + } + } + try { + ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_attribute: H5Sget_simple_extent_ndims: " + err); + } + refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE]; + // Read the reference from the dataset. + try { + H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, refbuf); + } + catch (Exception err) { + err.printStackTrace(); + fail("testH5Rget_region_attribute: H5Dread: " + err); + } -// These tests need to be updated with new APIs -// @Test// -// public void testH5Rget_group() { -// long loc_id = H5fid; -// int ref_type = HDF5Constants.H5R_OBJECT2; -// long ret_val = -1; -// byte[] ref = null; -// String name = ""; -// String objName = "/dset"; -// -// try { -// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("testH5Rget_object: H5Rcreate_object " + err); -// } -// try { -// dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1); -// -// //Create reference on group -// ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); -// group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2); -// assertNotNull(ref1); -// assertNotNull(ref2); -// assertTrue(dataset_id >= 0); -// assertTrue(group_id >= 0); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("TestH5Rdereference " + err); -// } -// finally { -// try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} -// try {H5.H5Gclose(group_id);} catch (Exception ex) {} -// } -// } + for (int i = 0; i < ndims; i++) { + try { + ret_val = H5.H5Rget_type(refbuf[i]); + assertTrue("testH5Rget_region_attribute: H5Rget_type[" + i + "]=" + ret_val, + ret_val == ref_type); + try { + loc_id = H5.H5Ropen_attr(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue(loc_id >= 0); + if (!byteArrayCheck(refbuf[i])) { + try { + loc_sid = H5.H5Aget_space(loc_id); + assertTrue(loc_sid >= 0); + } + catch (Throwable err1) { + err1.printStackTrace(); + fail("testH5Rget_region_attribute: " + err1); + } + finally { + try { + H5.H5Sclose(loc_sid); + } + catch (Exception ex) { + } + } + } + } + catch (Throwable err0) { + err0.printStackTrace(); + // second attribute is null + assertTrue("testH5Rget_region_attribute: " + err0, i == 1); + } + finally { + try { + H5.H5Aclose(loc_id); + } + catch (Exception ex) { + } + } + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_attribute: H5Rget_type: " + err); + } + finally { + H5.H5Rdestroy(refbuf[i]); + } + } + } -// @Test// -// public void testH5Rget_attr() { -// long loc_id = H5fid; -// int ref_type = HDF5Constants.H5R_OBJECT2; -// long ret_val = -1; -// byte[] ref = null; -// String name = ""; -// String objName = "/dset"; -// -// try { -// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("testH5Rget_object: H5Rcreate_object " + err); -// } -// try { -// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); -// assertNotNull(ref); -// assertTrue(dsid >= 0); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("TestH5Rget_region: " + err); -// } -// finally { -// try {H5.H5Sclose(dsid);} catch (Exception ex) {} -// } -// } + // These tests need to be updated with new APIs + // @Test// + // public void testH5Rget_group() { + // long loc_id = H5fid; + // int ref_type = HDF5Constants.H5R_OBJECT2; + // long ret_val = -1; + // byte[] ref = null; + // String name = ""; + // String objName = "/dset"; + // + // try { + // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("testH5Rget_object: H5Rcreate_object " + err); + // } + // try { + // dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, + // HDF5Constants.H5R_DATASET_REGION, ref1); + // + // //Create reference on group + // ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); + // group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, + // ref2); assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id >= 0); + // assertTrue(group_id >= 0); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("TestH5Rdereference " + err); + // } + // finally { + // try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} + // try {H5.H5Gclose(group_id);} catch (Exception ex) {} + // } + // } + // @Test// + // public void testH5Rget_attr() { + // long loc_id = H5fid; + // int ref_type = HDF5Constants.H5R_OBJECT2; + // long ret_val = -1; + // byte[] ref = null; + // String name = ""; + // String objName = "/dset"; + // + // try { + // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("testH5Rget_object: H5Rcreate_object " + err); + // } + // try { + // dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); + // assertNotNull(ref); + // assertTrue(dsid >= 0); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("TestH5Rget_region: " + err); + // } + // finally { + // try {H5.H5Sclose(dsid);} catch (Exception ex) {} + // } + // } } diff --git a/java/test/TestH5S.java b/java/test/TestH5S.java index 7eeed7a..6e081a6 100644 --- a/java/test/TestH5S.java +++ b/java/test/TestH5S.java @@ -12,10 +12,10 @@ package test; - import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; + import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5Exception; @@ -28,16 +28,17 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5S { - @Rule public TestName testname = new TestName(); - long H5sid = HDF5Constants.H5I_INVALID_HID; - int H5rank = 2; - long H5dims[] = {5, 5}; - long H5maxdims[] = {10, 10}; + @Rule + public TestName testname = new TestName(); + long H5sid = HDF5Constants.H5I_INVALID_HID; + int H5rank = 2; + long H5dims[] = {5, 5}; + long H5maxdims[] = {10, 10}; @Before - public void createH5file() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); H5sid = H5.H5Screate_simple(H5rank, H5dims, H5maxdims); @@ -45,15 +46,21 @@ public class TestH5S { } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5sid > 0) { - try {H5.H5Sclose(H5sid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5sid); + } + catch (Exception ex) { + } } System.out.println(); } @Test - public void testH5Sget_simple_extent_ndims() { + public void testH5Sget_simple_extent_ndims() + { int read_rank = -1; try { read_rank = H5.H5Sget_simple_extent_ndims(H5sid); @@ -66,7 +73,8 @@ public class TestH5S { } @Test - public void testH5Sget_simple_extent_dims_null() { + public void testH5Sget_simple_extent_dims_null() + { int read_rank = -1; try { @@ -80,9 +88,10 @@ public class TestH5S { } @Test - public void testH5Sget_simple_extent_dims() { - int read_rank = -1; - long dims[] = {5, 5}; + public void testH5Sget_simple_extent_dims() + { + int read_rank = -1; + long dims[] = {5, 5}; long maxdims[] = {10, 10}; try { @@ -98,11 +107,12 @@ public class TestH5S { } @Test - public void testH5Sget_simple_extent_npoints() { + public void testH5Sget_simple_extent_npoints() + { long num_elements = -1; try { num_elements = H5.H5Sget_simple_extent_npoints(H5sid); - assertTrue("H5.H5Sget_simple_extent_npoints", (H5dims[0]*H5dims[1]) == num_elements); + assertTrue("H5.H5Sget_simple_extent_npoints", (H5dims[0] * H5dims[1]) == num_elements); } catch (Throwable err) { err.printStackTrace(); @@ -111,7 +121,8 @@ public class TestH5S { } @Test - public void testH5Sget_simple_extent_type() { + public void testH5Sget_simple_extent_type() + { int read_type = -1; try { read_type = H5.H5Sget_simple_extent_type(H5sid); @@ -124,7 +135,8 @@ public class TestH5S { } @Test - public void testH5Sis_simple() { + public void testH5Sis_simple() + { boolean result = false; try { @@ -138,12 +150,13 @@ public class TestH5S { } @Test - public void testH5Sset_extent_simple() { + public void testH5Sset_extent_simple() + { long num_elements = -1; try { H5.H5Sset_extent_simple(H5sid, H5rank, H5maxdims, H5maxdims); num_elements = H5.H5Sget_simple_extent_npoints(H5sid); - assertTrue("H5.H5Sget_simple_extent_npoints", (H5maxdims[0]*H5maxdims[1]) == num_elements); + assertTrue("H5.H5Sget_simple_extent_npoints", (H5maxdims[0] * H5maxdims[1]) == num_elements); } catch (Throwable err) { err.printStackTrace(); @@ -152,7 +165,8 @@ public class TestH5S { } @Test - public void testH5Sget_select_type() { + public void testH5Sget_select_type() + { int read_type = -1; try { read_type = H5.H5Sget_select_type(H5sid); @@ -165,12 +179,13 @@ public class TestH5S { } @Test - public void testH5Sset_extent_none() { + public void testH5Sset_extent_none() + { int read_type = -1; try { H5.H5Sset_extent_none(H5sid); read_type = H5.H5Sget_simple_extent_type(H5sid); - assertTrue("H5.H5Sget_simple_extent_type: "+read_type, HDF5Constants.H5S_NULL == read_type); + assertTrue("H5.H5Sget_simple_extent_type: " + read_type, HDF5Constants.H5S_NULL == read_type); } catch (Throwable err) { err.printStackTrace(); @@ -179,8 +194,9 @@ public class TestH5S { } @Test - public void testH5Scopy() { - long sid = HDF5Constants.H5I_INVALID_HID; + public void testH5Scopy() + { + long sid = HDF5Constants.H5I_INVALID_HID; int read_rank = -1; try { @@ -194,13 +210,18 @@ public class TestH5S { fail("H5.H5Scopy: " + err); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test - public void testH5Sextent_copy() { - long sid = HDF5Constants.H5I_INVALID_HID; + public void testH5Sextent_copy() + { + long sid = HDF5Constants.H5I_INVALID_HID; int class_type = -1; try { @@ -215,18 +236,23 @@ public class TestH5S { fail("H5.H5Sextent_copy: " + err); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test - public void testH5Sextent_equal() { - long sid = HDF5Constants.H5I_INVALID_HID; + public void testH5Sextent_equal() + { + long sid = HDF5Constants.H5I_INVALID_HID; boolean result = false; try { sid = H5.H5Screate(HDF5Constants.H5S_NULL); - assertTrue("H5.H5Screate_null",sid > 0); + assertTrue("H5.H5Screate_null", sid > 0); } catch (Throwable err) { err.printStackTrace(); @@ -235,7 +261,7 @@ public class TestH5S { try { result = H5.H5Sextent_equal(sid, H5sid); - assertFalse("H5.testH5Sextent_equal",result); + assertFalse("H5.testH5Sextent_equal", result); H5.H5Sextent_copy(sid, H5sid); result = H5.H5Sextent_equal(sid, H5sid); assertTrue("H5.testH5Sextent_equal", result); @@ -245,16 +271,21 @@ public class TestH5S { fail("H5.H5Sextent_copy " + err); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test - public void testH5Sencode_decode_null_dataspace() { - long sid = HDF5Constants.H5I_INVALID_HID; + public void testH5Sencode_decode_null_dataspace() + { + long sid = HDF5Constants.H5I_INVALID_HID; long decoded_sid = HDF5Constants.H5I_INVALID_HID; byte[] null_sbuf = null; - boolean result = false; + boolean result = false; try { sid = H5.H5Screate(HDF5Constants.H5S_NULL); @@ -267,21 +298,25 @@ public class TestH5S { try { null_sbuf = H5.H5Sencode(sid); - assertFalse("H5.testH5Sencode", null_sbuf==null); + assertFalse("H5.testH5Sencode", null_sbuf == null); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Sencode " + err); } finally { - if(null_sbuf == null) { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + if (null_sbuf == null) { + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } try { decoded_sid = H5.H5Sdecode(null_sbuf); - assertTrue("H5.testH5Sdecode", decoded_sid>0); + assertTrue("H5.testH5Sdecode", decoded_sid > 0); result = H5.H5Sextent_equal(sid, decoded_sid); assertTrue("H5.testH5Sextent_equal", result); @@ -291,19 +326,28 @@ public class TestH5S { fail("H5.H5Sdecode " + err); } finally { - try {H5.H5Sclose(decoded_sid);} catch (Exception ex) {} - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(decoded_sid); + } + catch (Exception ex) { + } + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test - public void testH5Sencode_decode_scalar_dataspace() { - long sid = HDF5Constants.H5I_INVALID_HID; - long decoded_sid = HDF5Constants.H5I_INVALID_HID; + public void testH5Sencode_decode_scalar_dataspace() + { + long sid = HDF5Constants.H5I_INVALID_HID; + long decoded_sid = HDF5Constants.H5I_INVALID_HID; byte[] scalar_sbuf = null; - boolean result = false; - int iresult = -1; - long lresult = -1; + boolean result = false; + int iresult = -1; + long lresult = -1; try { sid = H5.H5Screate(HDF5Constants.H5S_SCALAR); @@ -316,52 +360,65 @@ public class TestH5S { try { scalar_sbuf = H5.H5Sencode(sid); - assertFalse("H5.testH5Sencode", scalar_sbuf==null); + assertFalse("H5.testH5Sencode", scalar_sbuf == null); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Sencode " + err); } finally { - if(scalar_sbuf == null) { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + if (scalar_sbuf == null) { + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } try { decoded_sid = H5.H5Sdecode(scalar_sbuf); - assertTrue("H5.testH5Sdecode", decoded_sid>0); + assertTrue("H5.testH5Sdecode", decoded_sid > 0); result = H5.H5Sextent_equal(sid, decoded_sid); assertTrue("H5.testH5Sextent_equal", result); /* Verify decoded dataspace */ lresult = H5.H5Sget_simple_extent_npoints(decoded_sid); - assertTrue("H5.testH5Sget_simple_extent_npoints", lresult==1); + assertTrue("H5.testH5Sget_simple_extent_npoints", lresult == 1); iresult = H5.H5Sget_simple_extent_ndims(decoded_sid); - assertTrue("H5.testH5Sget_simple_extent_ndims", iresult==0); + assertTrue("H5.testH5Sget_simple_extent_ndims", iresult == 0); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Sdecode " + err); } finally { - try {H5.H5Sclose(decoded_sid);} catch (Exception ex) {} - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(decoded_sid); + } + catch (Exception ex) { + } + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test - public void testH5Sselect_none() { + public void testH5Sselect_none() + { int read_type = -1; try { H5.H5Sselect_none(H5sid); read_type = H5.H5Sget_select_type(H5sid); - assertTrue("H5.H5Sget_select_type: "+read_type, HDF5Constants.H5S_SEL_NONE == read_type); + assertTrue("H5.H5Sget_select_type: " + read_type, HDF5Constants.H5S_SEL_NONE == read_type); H5.H5Sselect_all(H5sid); read_type = H5.H5Sget_select_type(H5sid); - assertTrue("H5.H5Sget_select_type: "+read_type, HDF5Constants.H5S_SEL_ALL == read_type); + assertTrue("H5.H5Sget_select_type: " + read_type, HDF5Constants.H5S_SEL_ALL == read_type); } catch (Throwable err) { err.printStackTrace(); @@ -370,13 +427,14 @@ public class TestH5S { } @Test - public void testH5Sget_select_npoints() { - long coord[][] = {{0,1},{2,4},{5,6}}; /* Coordinates for point selection */ + public void testH5Sget_select_npoints() + { + long coord[][] = {{0, 1}, {2, 4}, {5, 6}}; /* Coordinates for point selection */ long num_elements = -1; try { H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 3, coord); num_elements = H5.H5Sget_select_npoints(H5sid); - assertTrue("H5.H5Sget_select_npoints: "+num_elements, 3 == num_elements); + assertTrue("H5.H5Sget_select_npoints: " + num_elements, 3 == num_elements); } catch (Throwable err) { err.printStackTrace(); @@ -385,9 +443,10 @@ public class TestH5S { } @Test(expected = IllegalArgumentException.class) - public void testH5Sget_select_elem_pointlist_invalid() throws Throwable { - long coord[][] = {{0,1},{2,4},{5,6}}; /* Coordinates for point selection */ - long getcoord[] = {-1,-1}; /* Coordinates for get point selection */ + public void testH5Sget_select_elem_pointlist_invalid() throws Throwable + { + long coord[][] = {{0, 1}, {2, 4}, {5, 6}}; /* Coordinates for point selection */ + long getcoord[] = {-1, -1}; /* Coordinates for get point selection */ try { H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 3, coord); } @@ -399,9 +458,10 @@ public class TestH5S { } @Test - public void testH5Sget_select_elem_pointlist() { - long coord[][] = {{0,1},{2,3},{4,5}}; /* Coordinates for point selection */ - long getcoord[] = {-1,-1,-1,-1,-1,-1}; /* Coordinates for get point selection */ + public void testH5Sget_select_elem_pointlist() + { + long coord[][] = {{0, 1}, {2, 3}, {4, 5}}; /* Coordinates for point selection */ + long getcoord[] = {-1, -1, -1, -1, -1, -1}; /* Coordinates for get point selection */ try { H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 3, coord); H5.H5Sget_select_elem_pointlist(H5sid, 0, 3, getcoord); @@ -419,15 +479,16 @@ public class TestH5S { } @Test - public void testH5Sget_select_bounds() { - long lowbounds[] = {-1,-1}; - long hibounds[] = {-1,-1}; + public void testH5Sget_select_bounds() + { + long lowbounds[] = {-1, -1}; + long hibounds[] = {-1, -1}; try { H5.H5Sget_select_bounds(H5sid, lowbounds, hibounds); assertTrue("H5.H5Sget_select_bounds", 0 == lowbounds[0]); assertTrue("H5.H5Sget_select_bounds", 0 == lowbounds[1]); - assertTrue("H5.H5Sget_select_bounds", (H5dims[0]-1) == hibounds[0]); - assertTrue("H5.H5Sget_select_bounds", (H5dims[1]-1) == hibounds[1]); + assertTrue("H5.H5Sget_select_bounds", (H5dims[0] - 1) == hibounds[0]); + assertTrue("H5.H5Sget_select_bounds", (H5dims[1] - 1) == hibounds[1]); } catch (Throwable err) { err.printStackTrace(); @@ -436,30 +497,31 @@ public class TestH5S { } @Test - public void testH5Soffset_simple() { - long coord[][] = {{2,2},{2,4},{4,2},{4,4}}; /* Coordinates for point selection */ - long lowbounds[] = {-1,-1}; - long hibounds[] = {-1,-1}; + public void testH5Soffset_simple() + { + long coord[][] = {{2, 2}, {2, 4}, {4, 2}, {4, 4}}; /* Coordinates for point selection */ + long lowbounds[] = {-1, -1}; + long hibounds[] = {-1, -1}; try { H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 4, coord); H5.H5Sget_select_bounds(H5sid, lowbounds, hibounds); assertTrue("H5.H5Sget_select_bounds", 2 == lowbounds[0]); assertTrue("H5.H5Sget_select_bounds", 2 == lowbounds[1]); - assertTrue("H5.H5Sget_select_bounds", (H5dims[0]-1) == hibounds[0]); - assertTrue("H5.H5Sget_select_bounds", (H5dims[1]-1) == hibounds[1]); + assertTrue("H5.H5Sget_select_bounds", (H5dims[0] - 1) == hibounds[0]); + assertTrue("H5.H5Sget_select_bounds", (H5dims[1] - 1) == hibounds[1]); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Sget_select_bounds: " + err); } try { - long offset[] = {-1,-1}; + long offset[] = {-1, -1}; H5.H5Soffset_simple(H5sid, offset); H5.H5Sget_select_bounds(H5sid, lowbounds, hibounds); assertTrue("H5.H5Sget_select_bounds", 1 == lowbounds[0]); assertTrue("H5.H5Sget_select_bounds", 1 == lowbounds[1]); - assertTrue("H5.H5Sget_select_bounds", (H5dims[0]-2) == hibounds[0]); - assertTrue("H5.H5Sget_select_bounds", (H5dims[1]-2) == hibounds[1]); + assertTrue("H5.H5Sget_select_bounds", (H5dims[0] - 2) == hibounds[0]); + assertTrue("H5.H5Sget_select_bounds", (H5dims[1] - 2) == hibounds[1]); } catch (Throwable err) { err.printStackTrace(); @@ -468,14 +530,15 @@ public class TestH5S { } @Test - public void testH5Sget_select_hyper() { - long space1 = HDF5Constants.H5I_INVALID_HID; - long start[] = {0,0}; - long stride[] = {1,1}; - long count[] = {1,1}; - long block[] = {4,4}; - long nblocks; // Number of hyperslab blocks - long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks + public void testH5Sget_select_hyper() + { + long space1 = HDF5Constants.H5I_INVALID_HID; + long start[] = {0, 0}; + long stride[] = {1, 1}; + long count[] = {1, 1}; + long block[] = {4, 4}; + long nblocks; // Number of hyperslab blocks + long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks try { // Copy "all" selection & space space1 = H5.H5Scopy(H5sid); @@ -493,26 +556,31 @@ public class TestH5S { // Verify that the correct block is defined assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == blocks[0]); assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == blocks[1]); - assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0]-1) == blocks[2]); - assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1]-1) == blocks[3]); + assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0] - 1) == blocks[2]); + assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1] - 1) == blocks[3]); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Sget_select_bounds: " + err); } finally { - try {H5.H5Sclose(space1);} catch (Exception ex) {} + try { + H5.H5Sclose(space1); + } + catch (Exception ex) { + } } } @Test - public void testH5Sget_select_valid() { - long space1 = HDF5Constants.H5I_INVALID_HID; - long start[] = {1,0}; - long stride[] = {1,1}; - long count[] = {2,3}; - long block[] = {1,1}; - long offset[] = {0,0}; // Offset of selection + public void testH5Sget_select_valid() + { + long space1 = HDF5Constants.H5I_INVALID_HID; + long start[] = {1, 0}; + long stride[] = {1, 1}; + long count[] = {2, 3}; + long block[] = {1, 1}; + long offset[] = {0, 0}; // Offset of selection try { // Copy "all" selection & space @@ -522,20 +590,20 @@ public class TestH5S { H5.H5Sselect_hyperslab(space1, HDF5Constants.H5S_SELECT_SET, start, stride, count, block); // Check a valid offset - offset[0]=-1; - offset[1]=0; + offset[0] = -1; + offset[1] = 0; H5.H5Soffset_simple(space1, offset); assertTrue("H5Sselect_valid", H5.H5Sselect_valid(space1)); // Check an invalid offset - offset[0]=10; - offset[1]=0; + offset[0] = 10; + offset[1] = 0; H5.H5Soffset_simple(space1, offset); assertFalse("H5Sselect_valid", H5.H5Sselect_valid(space1)); /* Reset offset */ - offset[0]=0; - offset[1]=0; + offset[0] = 0; + offset[1] = 0; H5.H5Soffset_simple(space1, offset); assertTrue("H5Sselect_valid", H5.H5Sselect_valid(space1)); } @@ -544,20 +612,25 @@ public class TestH5S { fail("testH5Sget_select_valid: " + err); } finally { - try {H5.H5Sclose(space1);} catch (Exception ex) {} + try { + H5.H5Sclose(space1); + } + catch (Exception ex) { + } } } @Test - public void testH5Shyper_regular() { - long start[] = {1,0}; - long stride[] = {1,1}; - long count[] = {2,3}; - long block[] = {1,1}; - long q_start[] = new long[2]; - long q_stride[] = new long[2]; - long q_count[] = new long[2]; - long q_block[] = new long[2]; + public void testH5Shyper_regular() + { + long start[] = {1, 0}; + long stride[] = {1, 1}; + long count[] = {2, 3}; + long block[] = {1, 1}; + long q_start[] = new long[2]; + long q_stride[] = new long[2]; + long q_count[] = new long[2]; + long q_block[] = new long[2]; boolean is_regular = false; try { @@ -572,7 +645,7 @@ public class TestH5S { H5.H5Sget_regular_hyperslab(H5sid, q_start, q_stride, q_count, q_block); /* Verify the hyperslab parameters */ - for(int u = 0; u < H5rank; u++) { + for (int u = 0; u < H5rank; u++) { assertTrue("H5Sget_regular_hyperslab, start", start[u] == q_start[u]); assertTrue("H5Sget_regular_hyperslab, stride", stride[u] == q_stride[u]); assertTrue("H5Sget_regular_hyperslab, count", count[u] == q_count[u]); diff --git a/java/test/TestH5Sbasic.java b/java/test/TestH5Sbasic.java index 548ac95..3b92c92 100644 --- a/java/test/TestH5Sbasic.java +++ b/java/test/TestH5Sbasic.java @@ -14,6 +14,7 @@ package test; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; + import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5LibraryException; @@ -25,56 +26,68 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Sbasic { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); @Before - public void checkOpenIDs() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void checkOpenIDs() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @After - public void nextTestName() { + public void nextTestName() + { System.out.println(); } - @Test//(expected = HDF5LibraryException.class) - public void testH5Sclose_invalid() throws Throwable { + @Test //(expected = HDF5LibraryException.class) + public void testH5Sclose_invalid() throws Throwable + { long sid = H5.H5Sclose(-1); assertTrue(sid == 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Screate_invalid() throws Throwable { + public void testH5Screate_invalid() throws Throwable + { H5.H5Screate(-1); } @Test(expected = IllegalArgumentException.class) - public void testH5Sget_simple_extent_type_invalid() throws Throwable { + public void testH5Sget_simple_extent_type_invalid() throws Throwable + { H5.H5Sget_simple_extent_type(-1); } @Test - public void testH5Screate_scalar() { - long sid = HDF5Constants.H5I_INVALID_HID; + public void testH5Screate_scalar() + { + long sid = HDF5Constants.H5I_INVALID_HID; int class_type = -1; try { sid = H5.H5Screate(HDF5Constants.H5S_SCALAR); - assertTrue("H5.H5Screate_scalar",sid > 0); + assertTrue("H5.H5Screate_scalar", sid > 0); class_type = H5.H5Sget_simple_extent_type(sid); - assertTrue("H5.H5Screate_scalar: type",class_type == HDF5Constants.H5S_SCALAR); + assertTrue("H5.H5Screate_scalar: type", class_type == HDF5Constants.H5S_SCALAR); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Screate: " + err); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test - public void testH5Screate_null() { - long sid = HDF5Constants.H5I_INVALID_HID; + public void testH5Screate_null() + { + long sid = HDF5Constants.H5I_INVALID_HID; int class_type = -1; try { sid = H5.H5Screate(HDF5Constants.H5S_NULL); @@ -87,47 +100,56 @@ public class TestH5Sbasic { fail("H5.H5Screate: " + err); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test(expected = NullPointerException.class) - public void testH5Screate_simple_dims_null() throws Throwable { + public void testH5Screate_simple_dims_null() throws Throwable + { H5.H5Screate_simple(2, (long[])null, null); } @Test(expected = IllegalArgumentException.class) - public void testH5Screate_simple_rank_invalid() throws Throwable { + public void testH5Screate_simple_rank_invalid() throws Throwable + { long dims[] = {5, 5}; H5.H5Screate_simple(-1, dims, null); } @Test(expected = IllegalArgumentException.class) - public void testH5Screate_simple_dims_invalid() throws Throwable { + public void testH5Screate_simple_dims_invalid() throws Throwable + { long dims[] = {2, 2}; H5.H5Screate_simple(5, dims, null); } @Test(expected = HDF5LibraryException.class) - public void testH5Screate_simple_dims_exceed() throws Throwable { - long dims[] = {0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20, - 21,22,23,24,25,26,27,28,29,30,31,32,33,35}; + public void testH5Screate_simple_dims_exceed() throws Throwable + { + long dims[] = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, + 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 35}; H5.H5Screate_simple(35, dims, null); } -//H5Screate_simple was changed to allow a dim of 0 -// @Ignore(expected = HDF5LibraryException.class) -// public void testH5Screate_simple_dims_zero() { -// long dims[] = {0, 0}; -// H5.H5Screate_simple(2, dims, null); -// } + // H5Screate_simple was changed to allow a dim of 0 + // @Ignore(expected = HDF5LibraryException.class) + // public void testH5Screate_simple_dims_zero() { + // long dims[] = {0, 0}; + // H5.H5Screate_simple(2, dims, null); + // } @Test - public void testH5Screate_simple() { - long sid = HDF5Constants.H5I_INVALID_HID; + public void testH5Screate_simple() + { + long sid = HDF5Constants.H5I_INVALID_HID; int class_type = -1; - int rank = 2; - long dims[] = {5, 5}; + int rank = 2; + long dims[] = {5, 5}; long maxdims[] = {10, 10}; try { @@ -141,16 +163,21 @@ public class TestH5Sbasic { fail("H5.H5Screate_simple: " + err); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test - public void testH5Screate_simple_unlimted() { - long sid = HDF5Constants.H5I_INVALID_HID; + public void testH5Screate_simple_unlimted() + { + long sid = HDF5Constants.H5I_INVALID_HID; int class_type = -1; - int rank = 2; - long dims[] = {5, 5}; + int rank = 2; + long dims[] = {5, 5}; long maxdims[] = {HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED}; try { @@ -164,16 +191,21 @@ public class TestH5Sbasic { fail("H5.H5Screate_simple: " + err); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test - public void testH5Screate_simple_unlimted_1d() { - long sid = HDF5Constants.H5I_INVALID_HID; + public void testH5Screate_simple_unlimted_1d() + { + long sid = HDF5Constants.H5I_INVALID_HID; int class_type = -1; - int rank = 1; - long dims[] = {5}; + int rank = 1; + long dims[] = {5}; long maxdims[] = {HDF5Constants.H5S_UNLIMITED}; try { @@ -187,14 +219,19 @@ public class TestH5Sbasic { fail("H5.H5Screate_simple: " + err); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test - public void testH5Screate_simple_max_default() { - long sid = HDF5Constants.H5I_INVALID_HID; - int rank = 2; + public void testH5Screate_simple_max_default() + { + long sid = HDF5Constants.H5I_INVALID_HID; + int rank = 2; long dims[] = {5, 5}; try { @@ -206,20 +243,25 @@ public class TestH5Sbasic { fail("H5.H5Screate_simple: " + err); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test - public void testH5Screate_simple_extent() { - long sid = HDF5Constants.H5I_INVALID_HID; - int rank = 2; - long dims[] = {5, 5}; + public void testH5Screate_simple_extent() + { + long sid = HDF5Constants.H5I_INVALID_HID; + int rank = 2; + long dims[] = {5, 5}; long maxdims[] = {10, 10}; try { sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE); - assertTrue("H5.H5Screate_simple_extent",sid > 0); + assertTrue("H5.H5Screate_simple_extent", sid > 0); H5.H5Sset_extent_simple(sid, rank, dims, maxdims); } catch (Throwable err) { @@ -227,156 +269,195 @@ public class TestH5Sbasic { fail("H5.H5Screate: " + err); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test(expected = IllegalArgumentException.class) - public void testH5Sencode_invalid() throws Throwable { + public void testH5Sencode_invalid() throws Throwable + { H5.H5Sencode(-1); } @Test(expected = NullPointerException.class) - public void testH5Sdecode_null() throws Throwable { + public void testH5Sdecode_null() throws Throwable + { H5.H5Sdecode(null); } @Test(expected = IllegalArgumentException.class) - public void testH5Sget_regular_hyperslab_invalid() throws Throwable { - long q_start[] = new long[2]; + public void testH5Sget_regular_hyperslab_invalid() throws Throwable + { + long q_start[] = new long[2]; long q_stride[] = new long[2]; - long q_count[] = new long[2]; - long q_block[] = new long[2]; + long q_count[] = new long[2]; + long q_block[] = new long[2]; H5.H5Sget_regular_hyperslab(-1, q_start, q_stride, q_count, q_block); } @Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class) - public void testH5Sselect_copy_invalid() throws Throwable { + public void testH5Sselect_copy_invalid() throws Throwable + { H5.H5Sselect_copy(-1, -1); } @Test(expected = hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException.class) - public void testH5Sselect_shape_same_invalid() throws Throwable { + public void testH5Sselect_shape_same_invalid() throws Throwable + { H5.H5Sselect_shape_same(-1, -1); } @Test(expected = IllegalArgumentException.class) - public void testH5Sselect_adjust_invalid() throws Throwable { - long offset[][] = {{0,1},{2,4},{5,6}}; + public void testH5Sselect_adjust_invalid() throws Throwable + { + long offset[][] = {{0, 1}, {2, 4}, {5, 6}}; H5.H5Sselect_adjust(-1, offset); } @Test(expected = IllegalArgumentException.class) - public void testH5Sselect_adjust_rank_offset() throws Throwable { - long sid = HDF5Constants.H5I_INVALID_HID; - long offset[][] = {{0,1},{2,4},{5,6}}; + public void testH5Sselect_adjust_rank_offset() throws Throwable + { + long sid = HDF5Constants.H5I_INVALID_HID; + long offset[][] = {{0, 1}, {2, 4}, {5, 6}}; try { sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE); - assertTrue("H5.H5Screate_simple_extent",sid > 0); + assertTrue("H5.H5Screate_simple_extent", sid > 0); H5.H5Sselect_adjust(sid, offset); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test(expected = IllegalArgumentException.class) - public void testH5Sselect_intersect_block_invalid() throws Throwable { + public void testH5Sselect_intersect_block_invalid() throws Throwable + { long start[] = new long[2]; - long end[] = new long[2]; + long end[] = new long[2]; H5.H5Sselect_intersect_block(-1, start, end); } @Test(expected = IllegalArgumentException.class) - public void testH5Sselect_intersect_block_rank_start() throws Throwable { - long sid = HDF5Constants.H5I_INVALID_HID; + public void testH5Sselect_intersect_block_rank_start() throws Throwable + { + long sid = HDF5Constants.H5I_INVALID_HID; long start[] = new long[2]; - long end[] = null; + long end[] = null; try { sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE); - assertTrue("H5.H5Screate_simple_extent",sid > 0); + assertTrue("H5.H5Screate_simple_extent", sid > 0); H5.H5Sselect_intersect_block(sid, start, end); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test(expected = IllegalArgumentException.class) - public void testH5Sselect_intersect_block_rank_end() throws Throwable { - long sid = HDF5Constants.H5I_INVALID_HID; + public void testH5Sselect_intersect_block_rank_end() throws Throwable + { + long sid = HDF5Constants.H5I_INVALID_HID; long start[] = null; - long end[] = new long[2]; + long end[] = new long[2]; try { sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE); - assertTrue("H5.H5Screate_simple_extent",sid > 0); + assertTrue("H5.H5Screate_simple_extent", sid > 0); H5.H5Sselect_intersect_block(sid, start, end); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test(expected = hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException.class) - public void testH5Sselect_project_intersection_invalid() throws Throwable { + public void testH5Sselect_project_intersection_invalid() throws Throwable + { H5.H5Sselect_project_intersection(-1, -1, -1); } @Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class) - public void testH5Scombine_hyperslab_invalid() throws Throwable { + public void testH5Scombine_hyperslab_invalid() throws Throwable + { long start[] = new long[2]; long count[] = new long[2]; H5.H5Scombine_hyperslab(-1, 0, start, null, count, null); } @Test(expected = NullPointerException.class) - public void testH5Scombine_hyperslab_null_start() throws Throwable { - long sid = HDF5Constants.H5I_INVALID_HID; - long start[] = null; + public void testH5Scombine_hyperslab_null_start() throws Throwable + { + long sid = HDF5Constants.H5I_INVALID_HID; + long start[] = null; long stride[] = null; - long count[] = new long[2]; - long block[] = null; + long count[] = new long[2]; + long block[] = null; try { sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE); - assertTrue("H5.H5Screate_simple_extent",sid > 0); + assertTrue("H5.H5Screate_simple_extent", sid > 0); H5.H5Scombine_hyperslab(sid, 0, start, stride, count, block); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test(expected = NullPointerException.class) - public void testH5Scombine_hyperslab_null_count() throws Throwable { - long sid = HDF5Constants.H5I_INVALID_HID; - long start[] = new long[2]; + public void testH5Scombine_hyperslab_null_count() throws Throwable + { + long sid = HDF5Constants.H5I_INVALID_HID; + long start[] = new long[2]; long stride[] = null; - long count[] = null; - long block[] = null; + long count[] = null; + long block[] = null; try { sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE); - assertTrue("H5.H5Screate_simple_extent",sid > 0); + assertTrue("H5.H5Screate_simple_extent", sid > 0); H5.H5Scombine_hyperslab(sid, 0, start, stride, count, block); } finally { - try {H5.H5Sclose(sid);} catch (Exception ex) {} + try { + H5.H5Sclose(sid); + } + catch (Exception ex) { + } } } @Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class) - public void testH5Smodify_select_invalid() throws Throwable { + public void testH5Smodify_select_invalid() throws Throwable + { H5.H5Smodify_select(-1, 0, -1); } @Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class) - public void testH5Scombine_select_invalid() throws Throwable { + public void testH5Scombine_select_invalid() throws Throwable + { H5.H5Scombine_select(-1, 0, -1); } - } diff --git a/java/test/TestH5T.java b/java/test/TestH5T.java index ed4e2a9..0121cc2 100644 --- a/java/test/TestH5T.java +++ b/java/test/TestH5T.java @@ -30,30 +30,38 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5T { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "testT.h5"; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5strdid = HDF5Constants.H5I_INVALID_HID; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5strdid = HDF5Constants.H5I_INVALID_HID; - private final void _deleteFile(String filename) { + private final void _deleteFile(String filename) + { File file = null; try { file = new File(filename); } - catch (Throwable err) {} + catch (Throwable err) { + } if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } @Before - public void createH5file() throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); assertTrue("H5.H5Fcreate", H5fid > 0); H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1); assertTrue("H5.H5Tcopy", H5strdid > 0); @@ -62,28 +70,39 @@ public class TestH5T { } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5strdid >= 0) - try {H5.H5Tclose(H5strdid);} catch (Exception ex) {} + try { + H5.H5Tclose(H5strdid); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } _deleteFile(H5_FILE); System.out.println(); } @Test(expected = HDF5LibraryException.class) - public void testH5Tequal_type_error() throws Throwable { + public void testH5Tequal_type_error() throws Throwable + { H5.H5Tequal(HDF5Constants.H5T_INTEGER, H5strdid); } @Test - public void testH5Tget_class() { + public void testH5Tget_class() + { try { int result = H5.H5Tget_class(H5strdid); assertTrue("H5.H5Tget_class", result > 0); String class_name = H5.H5Tget_class_name(result); - assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING")==0); + assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING") == 0); } catch (Throwable err) { err.printStackTrace(); @@ -92,7 +111,8 @@ public class TestH5T { } @Test - public void testH5Tget_size() { + public void testH5Tget_size() + { long dt_size = -1; try { @@ -106,7 +126,8 @@ public class TestH5T { } @Test - public void testH5Tset_size() { + public void testH5Tset_size() + { long dt_size = 5; try { @@ -127,89 +148,105 @@ public class TestH5T { } @Test - public void testH5Tarray_create() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - long[] adims = { 3, 5 }; - - try { - filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); - assertTrue("testH5Tarray_create", filetype_id >= 0); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tarray_create.H5Tarray_create " + err); - } - finally { - if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} - } + public void testH5Tarray_create() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + long[] adims = {3, 5}; + + try { + filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); + assertTrue("testH5Tarray_create", filetype_id >= 0); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tarray_create.H5Tarray_create " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } } @Test - public void testH5Tget_array_ndims() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - int ndims = 0; - long[] adims = { 3, 5 }; - - try { - filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tarray_create.H5Tarray_create " + err); - } - assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0); - try { - ndims = H5.H5Tget_array_ndims(filetype_id); - assertTrue("testH5Tget_array_ndims", ndims == 2); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err); - } - finally { - if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} - } + public void testH5Tget_array_ndims() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + int ndims = 0; + long[] adims = {3, 5}; + + try { + filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tarray_create.H5Tarray_create " + err); + } + assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0); + try { + ndims = H5.H5Tget_array_ndims(filetype_id); + assertTrue("testH5Tget_array_ndims", ndims == 2); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } } @Test - public void testH5Tget_array_dims() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - int ndims = 0; - long[] adims = { 3, 5 }; - long[] rdims = new long[2]; - - try { - filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tarray_create.H5Tarray_create " + err); - } - assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0); - try { - ndims = H5.H5Tget_array_dims(filetype_id, rdims); - assertTrue("testH5Tget_array_dims", ndims == 2); - assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]); - assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tget_array_dims.H5Tget_array_dims " + err); - } - finally { - if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} - } + public void testH5Tget_array_dims() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + int ndims = 0; + long[] adims = {3, 5}; + long[] rdims = new long[2]; + + try { + filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tarray_create.H5Tarray_create " + err); + } + assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0); + try { + ndims = H5.H5Tget_array_dims(filetype_id, rdims); + assertTrue("testH5Tget_array_dims", ndims == 2); + assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]); + assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tget_array_dims.H5Tget_array_dims " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } } @Test - public void testH5Tenum_functions() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - String enum_type ="Enum_type"; - byte[] enum_val = new byte[1]; - String enum_name = null; + public void testH5Tenum_functions() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + String enum_type = "Enum_type"; + byte[] enum_val = new byte[1]; + String enum_name = null; // Create a enumerate datatype try { @@ -221,15 +258,15 @@ public class TestH5T { } assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0); try { - enum_val[0]=10; + enum_val[0] = 10; H5.H5Tenum_insert(filetype_id, "RED", enum_val); - enum_val[0]=11; + enum_val[0] = 11; H5.H5Tenum_insert(filetype_id, "GREEN", enum_val); - enum_val[0]=12; + enum_val[0] = 12; H5.H5Tenum_insert(filetype_id, "BLUE", enum_val); - enum_val[0]=13; + enum_val[0] = 13; H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val); - enum_val[0]=14; + enum_val[0] = 14; H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val); // Query member number and member index by member name, for enumeration type. @@ -237,7 +274,8 @@ public class TestH5T { assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3); // Commit enumeration datatype and close it */ - H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Tclose(filetype_id); @@ -250,17 +288,17 @@ public class TestH5T { assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3); // Query member value by member name, for enumeration type - H5.H5Tenum_valueof (filetype_id, "ORANGE", enum_val); - assertTrue("Incorrect value for enum member", enum_val[0]==13); + H5.H5Tenum_valueof(filetype_id, "ORANGE", enum_val); + assertTrue("Incorrect value for enum member", enum_val[0] == 13); // Query member value by member index, for enumeration type - H5.H5Tget_member_value (filetype_id, 2, enum_val); - assertTrue("Incorrect value for enum member", enum_val[0]==12); + H5.H5Tget_member_value(filetype_id, 2, enum_val); + assertTrue("Incorrect value for enum member", enum_val[0] == 12); // Query member name by member value, for enumeration type enum_val[0] = 14; - enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16); - assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW")==0); + enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16); + assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW") == 0); } catch (Throwable err) { err.printStackTrace(); @@ -268,14 +306,19 @@ public class TestH5T { } finally { if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Tenum_create_functions() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - byte[] enum_val = new byte[1]; + public void testH5Tenum_create_functions() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + byte[] enum_val = new byte[1]; // Create a enumerate datatype try { @@ -287,15 +330,15 @@ public class TestH5T { } assertTrue("testH5Tenum_create_functions:H5Tcreate", filetype_id >= 0); try { - enum_val[0]=10; + enum_val[0] = 10; H5.H5Tenum_insert(filetype_id, "RED", enum_val); - enum_val[0]=11; + enum_val[0] = 11; H5.H5Tenum_insert(filetype_id, "GREEN", enum_val); - enum_val[0]=12; + enum_val[0] = 12; H5.H5Tenum_insert(filetype_id, "BLUE", enum_val); - enum_val[0]=13; + enum_val[0] = 13; H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val); - enum_val[0]=14; + enum_val[0] = 14; H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val); // Query member number and member index by member name, for enumeration type. @@ -308,14 +351,19 @@ public class TestH5T { } finally { if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Topaque_functions() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - String opaque_name = null; + public void testH5Topaque_functions() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + String opaque_name = null; // Create a opaque datatype try { @@ -330,7 +378,7 @@ public class TestH5T { try { H5.H5Tset_tag(filetype_id, "opaque type"); opaque_name = H5.H5Tget_tag(filetype_id); - assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type")==0); + assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type") == 0); } catch (Throwable err) { err.printStackTrace(); @@ -338,67 +386,83 @@ public class TestH5T { } finally { if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Tvlen_create() { + public void testH5Tvlen_create() + { long filetype_id = HDF5Constants.H5I_INVALID_HID; - try { - filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1); - assertTrue("testH5Tvlen_create", filetype_id >= 0); - - // Check if datatype is VL type - int vlclass = H5.H5Tget_class(filetype_id); - assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN); - assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tvlen_create.H5Tvlen_create " + err); - } - finally { - if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} - } + try { + filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1); + assertTrue("testH5Tvlen_create", filetype_id >= 0); + + // Check if datatype is VL type + int vlclass = H5.H5Tget_class(filetype_id); + assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN); + assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tvlen_create.H5Tvlen_create " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } } @Test - public void testH5Tis_variable_str() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - - try { - filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1); - assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0); - - // Convert to variable-length string - H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE); - - // Check if datatype is VL string - int vlclass = H5.H5Tget_class(filetype_id); - assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING); - assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN); - - assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id)); - - // Verify that the class detects as a string - assertTrue("testH5Tis_variable_str:H5Tdetect_class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING)); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tis_variable_str " + err); - } - finally { - if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} - } + public void testH5Tis_variable_str() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + + try { + filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1); + assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0); + + // Convert to variable-length string + H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE); + + // Check if datatype is VL string + int vlclass = H5.H5Tget_class(filetype_id); + assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING); + assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN); + + assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id)); + + // Verify that the class detects as a string + assertTrue("testH5Tis_variable_str:H5Tdetect_class", + H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING)); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tis_variable_str " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } } @Test - public void testH5Tcompound_functions() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; + public void testH5Tcompound_functions() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; // Create a compound datatype try { @@ -420,28 +484,34 @@ public class TestH5T { // We started to support this function for compound type in 1.8.6 release. int order = H5.H5Tget_order(filetype_id); assertFalse("Can't get order for compound type.", order == HDF5Constants.H5T_ORDER_ERROR); - assertTrue("Wrong order for this type.", (order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE)); + assertTrue("Wrong order for this type.", + (order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE)); // Make certain that the correct classes can be detected - assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND)); + assertTrue("Can't get correct class", + H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND)); assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_FLOAT)); // Make certain that an incorrect class is not detected assertFalse("Can get incorrect class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_TIME)); // Query member name by member index - String index_name = H5.H5Tget_member_name (filetype_id, 0); - assertTrue("Incorrect name for member index", index_name.compareTo("Lon")==0); + String index_name = H5.H5Tget_member_name(filetype_id, 0); + assertTrue("Incorrect name for member index", index_name.compareTo("Lon") == 0); // Query member offset by member no - long index_offset = H5.H5Tget_member_offset (filetype_id, 1); + long index_offset = H5.H5Tget_member_offset(filetype_id, 1); assertTrue("Incorrect offset for member no", index_offset == 8); // Query member type by member index - long index_type = H5.H5Tget_member_type (filetype_id, 0); - assertTrue("Incorrect type for member index", H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type)); + long index_type = H5.H5Tget_member_type(filetype_id, 0); + assertTrue("Incorrect type for member index", + H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type)); if (index_type >= 0) - try {H5.H5Tclose(index_type);} catch (Exception ex) {} - + try { + H5.H5Tclose(index_type); + } + catch (Exception ex) { + } } catch (Throwable err) { err.printStackTrace(); @@ -449,8 +519,11 @@ public class TestH5T { } finally { if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } } } - } diff --git a/java/test/TestH5Tbasic.java b/java/test/TestH5Tbasic.java index 7aac2ab..8fb1e58 100644 --- a/java/test/TestH5Tbasic.java +++ b/java/test/TestH5Tbasic.java @@ -15,6 +15,7 @@ package test; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; + import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; @@ -25,24 +26,28 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Tbasic { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); @Before - public void checkOpenIDs() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void checkOpenIDs() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @After - public void nextTestName() { + public void nextTestName() + { System.out.println(); } @Test - public void testH5Tcopy() { + public void testH5Tcopy() + { long H5strdid = HDF5Constants.H5I_INVALID_HID; try { H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1); - assertTrue("H5.H5Tcopy",H5strdid > 0); + assertTrue("H5.H5Tcopy", H5strdid > 0); } catch (Throwable err) { err.printStackTrace(); @@ -50,18 +55,23 @@ public class TestH5Tbasic { } finally { if (H5strdid >= 0) - try {H5.H5Tclose(H5strdid);} catch (Exception ex) {} + try { + H5.H5Tclose(H5strdid); + } + catch (Exception ex) { + } } } @Test - public void testH5Tequal() { + public void testH5Tequal() + { long H5strdid = HDF5Constants.H5I_INVALID_HID; try { H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1); - assertTrue("H5.H5Tcopy",H5strdid > 0); + assertTrue("H5.H5Tcopy", H5strdid > 0); boolean teq = H5.H5Tequal(HDF5Constants.H5T_C_S1, H5strdid); - assertTrue("H5.H5Tequal",teq); + assertTrue("H5.H5Tequal", teq); } catch (Throwable err) { err.printStackTrace(); @@ -69,18 +79,23 @@ public class TestH5Tbasic { } finally { if (H5strdid >= 0) - try {H5.H5Tclose(H5strdid);} catch (Exception ex) {} + try { + H5.H5Tclose(H5strdid); + } + catch (Exception ex) { + } } } @Test - public void testH5Tequal_not() { + public void testH5Tequal_not() + { long H5strdid = HDF5Constants.H5I_INVALID_HID; try { H5strdid = H5.H5Tcopy(HDF5Constants.H5T_STD_U64LE); - assertTrue("H5.H5Tcopy",H5strdid > 0); + assertTrue("H5.H5Tcopy", H5strdid > 0); boolean teq = H5.H5Tequal(HDF5Constants.H5T_IEEE_F32BE, H5strdid); - assertFalse("H5.H5Tequal",teq); + assertFalse("H5.H5Tequal", teq); } catch (Throwable err) { err.printStackTrace(); @@ -88,22 +103,27 @@ public class TestH5Tbasic { } finally { if (H5strdid >= 0) - try {H5.H5Tclose(H5strdid);} catch (Exception ex) {} + try { + H5.H5Tclose(H5strdid); + } + catch (Exception ex) { + } } } @Test - public void testH5Tconvert() { - String[] strs = {"a1234","b1234"}; - int srcLen = 5; - int dstLen = 10; - long srcId = HDF5Constants.H5I_INVALID_HID; - long dstId = HDF5Constants.H5I_INVALID_HID; - int dimSize = strs.length; - byte[] buf = new byte[dimSize*dstLen]; - - for (int i=0; i<dimSize; i++) - System.arraycopy(strs[i].getBytes(), 0, buf, i*srcLen, 5); + public void testH5Tconvert() + { + String[] strs = {"a1234", "b1234"}; + int srcLen = 5; + int dstLen = 10; + long srcId = HDF5Constants.H5I_INVALID_HID; + long dstId = HDF5Constants.H5I_INVALID_HID; + int dimSize = strs.length; + byte[] buf = new byte[dimSize * dstLen]; + + for (int i = 0; i < dimSize; i++) + System.arraycopy(strs[i].getBytes(), 0, buf, i * srcLen, 5); try { srcId = H5.H5Tcopy(HDF5Constants.H5T_C_S1); @@ -119,22 +139,31 @@ public class TestH5Tbasic { fail("testH5Tconvert: " + err); } finally { - try {H5.H5Tclose(srcId);} catch (Exception ex) {} - try {H5.H5Tclose(dstId);} catch (Exception ex) {} + try { + H5.H5Tclose(srcId); + } + catch (Exception ex) { + } + try { + H5.H5Tclose(dstId); + } + catch (Exception ex) { + } } - for (int i=0; i<strs.length; i++) { - assertTrue((new String(buf, i*dstLen, dstLen)).startsWith(strs[i])); + for (int i = 0; i < strs.length; i++) { + assertTrue((new String(buf, i * dstLen, dstLen)).startsWith(strs[i])); } } @Test - public void testH5Torder_size() { + public void testH5Torder_size() + { long H5strdid = HDF5Constants.H5I_INVALID_HID; try { // Fixed length string H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1); - assertTrue("H5.H5Tcopy",H5strdid > 0); + assertTrue("H5.H5Tcopy", H5strdid > 0); H5.H5Tset_size(H5strdid, (long)5); assertTrue(HDF5Constants.H5T_ORDER_NONE == H5.H5Tget_order(H5strdid)); H5.H5Tset_order(H5strdid, HDF5Constants.H5T_ORDER_NONE); @@ -152,7 +181,11 @@ public class TestH5Tbasic { } finally { if (H5strdid >= 0) - try {H5.H5Tclose(H5strdid);} catch (Exception ex) {} + try { + H5.H5Tclose(H5strdid); + } + catch (Exception ex) { + } } } } diff --git a/java/test/TestH5Tparams.java b/java/test/TestH5Tparams.java index 92a034c..a1710af 100644 --- a/java/test/TestH5Tparams.java +++ b/java/test/TestH5Tparams.java @@ -13,6 +13,7 @@ package test; import static org.junit.Assert.assertTrue; + import hdf.hdf5lib.H5; import hdf.hdf5lib.exceptions.HDF5LibraryException; @@ -23,385 +24,459 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Tparams { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); @Before - public void checkOpenIDs() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void checkOpenIDs() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @After - public void nextTestName() { + public void nextTestName() + { System.out.println(); } - @Test//(expected = HDF5LibraryException.class) - public void testH5Tclose_invalid() throws Throwable { + @Test //(expected = HDF5LibraryException.class) + public void testH5Tclose_invalid() throws Throwable + { long tid = H5.H5Tclose(-1); assertTrue(tid == 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Tcopy_invalid() throws Throwable { + public void testH5Tcopy_invalid() throws Throwable + { H5.H5Tcopy(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tequal_invalid() throws Throwable { + public void testH5Tequal_invalid() throws Throwable + { H5.H5Tequal(-1, -1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tlock_invalid() throws Throwable { + public void testH5Tlock_invalid() throws Throwable + { H5.H5Tlock(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_class_invalid() throws Throwable { + public void testH5Tget_class_invalid() throws Throwable + { H5.H5Tget_class(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_size_invalid() throws Throwable { + public void testH5Tget_size_invalid() throws Throwable + { H5.H5Tget_size(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_size_invalid() throws Throwable { + public void testH5Tset_size_invalid() throws Throwable + { H5.H5Tset_size(-1, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_order_invalid() throws Throwable { + public void testH5Tget_order_invalid() throws Throwable + { H5.H5Tget_order(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_order_invalid() throws Throwable { + public void testH5Tset_order_invalid() throws Throwable + { H5.H5Tset_order(-1, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_precision_invalid() throws Throwable { + public void testH5Tget_precision_invalid() throws Throwable + { H5.H5Tget_precision(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_precision_long_invalid() throws Throwable { + public void testH5Tget_precision_long_invalid() throws Throwable + { H5.H5Tget_precision_long(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_precision_invalid() throws Throwable { + public void testH5Tset_precision_invalid() throws Throwable + { H5.H5Tset_precision(-1, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_offset_invalid() throws Throwable { + public void testH5Tget_offset_invalid() throws Throwable + { H5.H5Tget_offset(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_offset_invalid() throws Throwable { + public void testH5Tset_offset_invalid() throws Throwable + { H5.H5Tset_offset(-1, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Tcreate_invalid() throws Throwable { + public void testH5Tcreate_invalid() throws Throwable + { H5.H5Tcreate(-1, (long)0); } @Test(expected = NullPointerException.class) - public void testH5Topen_null() throws Throwable { + public void testH5Topen_null() throws Throwable + { H5.H5Topen(-1, null, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Topen_invalid() throws Throwable { + public void testH5Topen_invalid() throws Throwable + { H5.H5Topen(-1, "Bogus", 0); } @Test(expected = NullPointerException.class) - public void testH5Tcommit_null() throws Throwable { + public void testH5Tcommit_null() throws Throwable + { H5.H5Tcommit(-1, null, 0, -1, -1, -1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tcommit_invalid() throws Throwable { + public void testH5Tcommit_invalid() throws Throwable + { H5.H5Tcommit(-1, "Bogus", -1, -1, -1, -1); } @Test(expected = NullPointerException.class) - public void testH5Tget_pad_null() throws Throwable { + public void testH5Tget_pad_null() throws Throwable + { H5.H5Tget_pad(-1, null); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_pad_invalid() throws Throwable { + public void testH5Tget_pad_invalid() throws Throwable + { int[] pad = new int[2]; H5.H5Tget_pad(-1, pad); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_pad_invalid() throws Throwable { + public void testH5Tset_pad_invalid() throws Throwable + { H5.H5Tset_pad(-1, -1, -1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_sign_invalid() throws Throwable { + public void testH5Tget_sign_invalid() throws Throwable + { H5.H5Tget_sign(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_sign_invalid() throws Throwable { + public void testH5Tset_sign_invalid() throws Throwable + { H5.H5Tset_sign(-1, 0); } @Test(expected = NullPointerException.class) - public void testH5Tget_fields_null() throws Throwable { + public void testH5Tget_fields_null() throws Throwable + { H5.H5Tget_fields(-1, (long[])null); } @Test(expected = IllegalArgumentException.class) - public void testH5Tget_fields_length_invalid() throws Throwable { + public void testH5Tget_fields_length_invalid() throws Throwable + { long[] fields = new long[2]; H5.H5Tget_fields(-1, fields); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_fields_invalid() throws Throwable { + public void testH5Tget_fields_invalid() throws Throwable + { long[] fields = new long[5]; H5.H5Tget_fields(-1, fields); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_fields_invalid() throws Throwable { + public void testH5Tset_fields_invalid() throws Throwable + { H5.H5Tset_fields(-1, -1, -1, -1, -1, -1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_ebias_invalid() throws Throwable { + public void testH5Tget_ebias_invalid() throws Throwable + { H5.H5Tget_ebias(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_ebias_long_invalid() throws Throwable { + public void testH5Tget_ebias_long_invalid() throws Throwable + { H5.H5Tget_ebias_long(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_ebias_invalid() throws Throwable { + public void testH5Tset_ebias_invalid() throws Throwable + { H5.H5Tset_ebias(-1, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_norm_invalid() throws Throwable { + public void testH5Tget_norm_invalid() throws Throwable + { H5.H5Tget_norm(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_norm_invalid() throws Throwable { + public void testH5Tset_norm_invalid() throws Throwable + { H5.H5Tset_norm(-1, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_inpad_invalid() throws Throwable { + public void testH5Tget_inpad_invalid() throws Throwable + { H5.H5Tget_inpad(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_inpad_invalid() throws Throwable { + public void testH5Tset_inpad_invalid() throws Throwable + { H5.H5Tset_inpad(-1, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_cset_invalid() throws Throwable { + public void testH5Tget_cset_invalid() throws Throwable + { H5.H5Tget_cset(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_cset_invalid() throws Throwable { + public void testH5Tset_cset_invalid() throws Throwable + { H5.H5Tset_cset(-1, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_strpad_invalid() throws Throwable { + public void testH5Tget_strpad_invalid() throws Throwable + { H5.H5Tget_strpad(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_strpad_invalid() throws Throwable { + public void testH5Tset_strpad_invalid() throws Throwable + { H5.H5Tset_strpad(-1, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_nmembers_invalid() throws Throwable { + public void testH5Tget_nmembers_invalid() throws Throwable + { H5.H5Tget_nmembers(-1); } @Test(expected = NullPointerException.class) - public void testH5Tget_member_index_null() throws Throwable { + public void testH5Tget_member_index_null() throws Throwable + { H5.H5Tget_member_index(-1, null); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_member_index_invalid() throws Throwable { + public void testH5Tget_member_index_invalid() throws Throwable + { H5.H5Tget_member_index(-1, "Bogus"); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_member_type_invalid() throws Throwable { + public void testH5Tget_member_type_invalid() throws Throwable + { H5.H5Tget_member_type(-1, -1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_member_class_invalid() throws Throwable { + public void testH5Tget_member_class_invalid() throws Throwable + { H5.H5Tget_member_class(-1, -1); } @Test(expected = NullPointerException.class) - public void testH5Tinsert_null() throws Throwable { + public void testH5Tinsert_null() throws Throwable + { H5.H5Tinsert(-1, null, 0, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Tinsert_invalid() throws Throwable { + public void testH5Tinsert_invalid() throws Throwable + { H5.H5Tinsert(-1, "Bogus", 0, 0); } @Test(expected = HDF5LibraryException.class) - public void testH5Tpack_invalid() throws Throwable { + public void testH5Tpack_invalid() throws Throwable + { H5.H5Tpack(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Treclaim_invalid() throws Throwable { + public void testH5Treclaim_invalid() throws Throwable + { byte[] buf = new byte[2]; H5.H5Treclaim(-1, -1, -1, buf); } @Test(expected = NullPointerException.class) - public void testH5Treclaim_null() throws Throwable { + public void testH5Treclaim_null() throws Throwable + { H5.H5Treclaim(-1, -1, -1, null); } @Test(expected = HDF5LibraryException.class) - public void testH5Tvlen_create_invalid() throws Throwable { + public void testH5Tvlen_create_invalid() throws Throwable + { H5.H5Tvlen_create(-1); } @Test(expected = NullPointerException.class) - public void testH5Tset_tag_null() throws Throwable { + public void testH5Tset_tag_null() throws Throwable + { H5.H5Tset_tag(-1, null); } @Test(expected = HDF5LibraryException.class) - public void testH5Tset_tag_invalid() throws Throwable { + public void testH5Tset_tag_invalid() throws Throwable + { H5.H5Tset_tag(-1, "Bogus"); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_super_invalid() throws Throwable { + public void testH5Tget_super_invalid() throws Throwable + { H5.H5Tget_super(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tenum_create_invalid() throws Throwable { + public void testH5Tenum_create_invalid() throws Throwable + { H5.H5Tenum_create(-1); } @Test(expected = NullPointerException.class) - public void testH5Tenum_insert_name_null() throws Throwable { + public void testH5Tenum_insert_name_null() throws Throwable + { H5.H5Tenum_insert(-1, null, (byte[])null); } @Test(expected = NullPointerException.class) - public void testH5Tenum_insert_null() throws Throwable { + public void testH5Tenum_insert_null() throws Throwable + { H5.H5Tenum_insert(-1, "bogus", (byte[])null); } @Test(expected = HDF5LibraryException.class) - public void testH5Tenum_insert_invalid() throws Throwable { + public void testH5Tenum_insert_invalid() throws Throwable + { byte[] enumtype = new byte[2]; H5.H5Tenum_insert(-1, "bogus", enumtype); } @Test(expected = IllegalArgumentException.class) - public void testH5Tenum_nameof_invalid_size() throws Throwable { + public void testH5Tenum_nameof_invalid_size() throws Throwable + { H5.H5Tenum_nameof(-1, null, -1); } @Test(expected = NullPointerException.class) - public void testH5Tenum_nameof_value_null() throws Throwable { + public void testH5Tenum_nameof_value_null() throws Throwable + { H5.H5Tenum_nameof(-1, null, 1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tenum_nameof_invalid() throws Throwable { + public void testH5Tenum_nameof_invalid() throws Throwable + { byte[] btype = new byte[2]; H5.H5Tenum_nameof(-1, btype, 1); } @Test(expected = NullPointerException.class) - public void testH5Tenum_valueof_name_null() throws Throwable { + public void testH5Tenum_valueof_name_null() throws Throwable + { H5.H5Tenum_valueof(-1, null, (byte[])null); } @Test(expected = NullPointerException.class) - public void testH5Tenum_valueof_null() throws Throwable { + public void testH5Tenum_valueof_null() throws Throwable + { H5.H5Tenum_valueof(-1, "bogus", (byte[])null); } @Test(expected = HDF5LibraryException.class) - public void testH5Tenum_valueof_invalid() throws Throwable { + public void testH5Tenum_valueof_invalid() throws Throwable + { byte[] btype = new byte[2]; H5.H5Tenum_valueof(-1, "bogus", btype); } @Test(expected = NullPointerException.class) - public void testH5Tget_member_value_null() throws Throwable { + public void testH5Tget_member_value_null() throws Throwable + { H5.H5Tget_member_value(-1, -1, (byte[])null); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_member_value_invalid() throws Throwable { + public void testH5Tget_member_value_invalid() throws Throwable + { byte[] btype = new byte[2]; H5.H5Tget_member_value(-1, -1, btype); } @Test(expected = IllegalArgumentException.class) - public void testH5Tarray_create_invalid() throws Throwable { + public void testH5Tarray_create_invalid() throws Throwable + { H5.H5Tarray_create(-1, -1, null); } @Test(expected = NullPointerException.class) - public void testH5Tarray_create_value_null() throws Throwable { + public void testH5Tarray_create_value_null() throws Throwable + { H5.H5Tarray_create(-1, 1, null); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_array_ndims_invalid() throws Throwable { + public void testH5Tget_array_ndims_invalid() throws Throwable + { H5.H5Tget_array_ndims(-1); } @Test(expected = NullPointerException.class) - public void testH5Tget_array_dims_null() throws Throwable { + public void testH5Tget_array_dims_null() throws Throwable + { H5.H5Tget_array_dims(-1, null); } @Test(expected = HDF5LibraryException.class) - public void testH5Tget_native_type_invalid() throws Throwable { + public void testH5Tget_native_type_invalid() throws Throwable + { H5.H5Tget_native_type(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Tflush_invalid() throws Throwable { + public void testH5Tflush_invalid() throws Throwable + { H5.H5Tflush(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5Trefresh_invalid() throws Throwable { + public void testH5Trefresh_invalid() throws Throwable + { H5.H5Trefresh(-1); } - } diff --git a/java/test/TestH5VL.java b/java/test/TestH5VL.java index 4253d20..99505ae 100644 --- a/java/test/TestH5VL.java +++ b/java/test/TestH5VL.java @@ -16,12 +16,13 @@ import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; + +import java.io.File; + import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5LibraryException; -import java.io.File; - import org.junit.After; import org.junit.Before; import org.junit.Rule; @@ -29,28 +30,37 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5VL { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); - private final void _deleteFile(String filename) { + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } @Before - public void checkOpenIDs() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void checkOpenIDs() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @After - public void nextTestName() { + public void nextTestName() + { System.out.println(); } @Test - public void testH5VLnative_init() { + public void testH5VLnative_init() + { try { boolean is_registered; @@ -70,11 +80,12 @@ public class TestH5VL { } @Test - public void testH5VLget_connector_id() { + public void testH5VLget_connector_id() + { String H5_FILE = "testFvl.h5"; - long H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + long H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); try { long native_id = H5.H5VLget_connector_id(H5fid); @@ -95,14 +106,19 @@ public class TestH5VL { } finally { if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } _deleteFile(H5_FILE); } } @Test - public void testH5VLget_connector_id_by_name() { + public void testH5VLget_connector_id_by_name() + { try { long native_id = H5.H5VLget_connector_id_by_name(HDF5Constants.H5VL_NATIVE_NAME); assertTrue("H5.H5VLget_connector_id_by_name H5VL_NATIVE_NAME", native_id >= 0); @@ -115,7 +131,8 @@ public class TestH5VL { } @Test - public void testH5VLget_connector_id_by_value() { + public void testH5VLget_connector_id_by_value() + { try { long native_id = H5.H5VLget_connector_id_by_value(HDF5Constants.H5VL_NATIVE_VALUE); assertTrue("H5.H5VLget_connector_id_by_value H5VL_NATIVE_VALUE", native_id >= 0); @@ -128,11 +145,12 @@ public class TestH5VL { } @Test - public void testH5VLget_connector_name() { + public void testH5VLget_connector_name() + { String H5_FILE = "testFvl.h5"; - long H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + long H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); try { @@ -145,7 +163,8 @@ public class TestH5VL { */ String connector = System.getenv("HDF5_VOL_CONNECTOR"); if (connector == null) - assertTrue("H5.H5VLget_connector_name H5VL_NATIVE", native_name.compareToIgnoreCase(HDF5Constants.H5VL_NATIVE_NAME)==0); + assertTrue("H5.H5VLget_connector_name H5VL_NATIVE", + native_name.compareToIgnoreCase(HDF5Constants.H5VL_NATIVE_NAME) == 0); } catch (Throwable err) { err.printStackTrace(); @@ -153,20 +172,25 @@ public class TestH5VL { } finally { if (H5fid > 0) { - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } } _deleteFile(H5_FILE); } } @Test(expected = HDF5LibraryException.class) - public void testH5VLclose_NegativeID() throws Throwable { + public void testH5VLclose_NegativeID() throws Throwable + { H5.H5VLclose(-1); } @Test(expected = HDF5LibraryException.class) - public void testH5VLunregister_connector_NegativeID() throws Throwable { + public void testH5VLunregister_connector_NegativeID() throws Throwable + { H5.H5VLunregister_connector(-1); } } - diff --git a/java/test/TestH5Z.java b/java/test/TestH5Z.java index fde8f1a..bc6bfc0 100644 --- a/java/test/TestH5Z.java +++ b/java/test/TestH5Z.java @@ -14,6 +14,7 @@ package test; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; + import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5LibraryException; @@ -25,20 +26,24 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Z { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); @Before - public void checkOpenIDs() { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void checkOpenIDs() + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @After - public void nextTestName() { + public void nextTestName() + { System.out.println(); } @Test - public void testH5Zfilter_avail() { + public void testH5Zfilter_avail() + { try { int filter_found; @@ -64,34 +69,46 @@ public class TestH5Z { } @Test - public void testH5Zget_filter_info() { + public void testH5Zget_filter_info() + { try { int filter_flag; filter_flag = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_FLETCHER32); - assertTrue("H5.H5Zget_filter_info_FLETCHER32_DECODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0); - assertTrue("H5.H5Zget_filter_info_FLETCHER32_ENCODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0); + assertTrue("H5.H5Zget_filter_info_FLETCHER32_DECODE_ENABLED", + (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0); + assertTrue("H5.H5Zget_filter_info_FLETCHER32_ENCODE_ENABLED", + (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0); filter_flag = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_NBIT); - assertTrue("H5.H5Zget_filter_info_NBIT_DECODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0); - assertTrue("H5.H5Zget_filter_info_NBIT_ENCODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0); + assertTrue("H5.H5Zget_filter_info_NBIT_DECODE_ENABLED", + (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0); + assertTrue("H5.H5Zget_filter_info_NBIT_ENCODE_ENABLED", + (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0); filter_flag = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_SCALEOFFSET); - assertTrue("H5.H5Zget_filter_info_SCALEOFFSET_DECODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0); - assertTrue("H5.H5Zget_filter_info_SCALEOFFSET_ENCODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0); + assertTrue("H5.H5Zget_filter_info_SCALEOFFSET_DECODE_ENABLED", + (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0); + assertTrue("H5.H5Zget_filter_info_SCALEOFFSET_ENCODE_ENABLED", + (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0); filter_flag = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_SHUFFLE); - assertTrue("H5.H5Zget_filter_info_DECODE_SHUFFLE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0); - assertTrue("H5.H5Zget_filter_info_ENCODE_SHUFFLE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0); + assertTrue("H5.H5Zget_filter_info_DECODE_SHUFFLE_ENABLED", + (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0); + assertTrue("H5.H5Zget_filter_info_ENCODE_SHUFFLE_ENABLED", + (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0); - if(1 == H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_DEFLATE)) { + if (1 == H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_DEFLATE)) { filter_flag = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_DEFLATE); - assertTrue("H5.H5Zget_filter_info_DEFLATE_DECODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0); - assertTrue("H5.H5Zget_filter_info_DEFLATE_ENCODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0); + assertTrue("H5.H5Zget_filter_info_DEFLATE_DECODE_ENABLED", + (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0); + assertTrue("H5.H5Zget_filter_info_DEFLATE_ENCODE_ENABLED", + (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0); } - if(1 == H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_SZIP)) { + if (1 == H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_SZIP)) { filter_flag = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_SZIP); // Decode should always be available, but we have no way of determining // if encode is so don't assert on that. - assertTrue("H5.H5Zget_filter_info_DECODE_SZIP_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0); + assertTrue("H5.H5Zget_filter_info_DECODE_SZIP_ENABLED", + (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0); } } catch (Throwable err) { @@ -101,7 +118,8 @@ public class TestH5Z { } @Test(expected = HDF5LibraryException.class) - public void testH5Zunregister_predefined() throws Throwable { + public void testH5Zunregister_predefined() throws Throwable + { int filter_found = H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_SHUFFLE); assertTrue("H5.H5Zfilter_avail", filter_found > 0); |