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authorAllen Byrne <50328838+byrnHDF@users.noreply.github.com>2022-06-12 04:06:49 (GMT)
committerGitHub <noreply@github.com>2022-06-12 04:06:49 (GMT)
commit2a147be72f29bbe5077bdb7b21b74fc5d24f1b44 (patch)
treea9549d2f2c1ed4f0635f47d334005cbc0ff092b4 /java
parent4466a30825eda620a00e5d8fac35ecf765296aad (diff)
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Hdf5 1 12 sync (#1794)
Diffstat (limited to 'java')
-rw-r--r--java/examples/datasets/JavaDatasetExample.sh.in16
-rw-r--r--java/examples/datatypes/JavaDatatypeExample.sh.in16
-rw-r--r--java/examples/groups/JavaGroupExample.sh.in16
-rw-r--r--java/examples/intro/JavaIntroExample.sh.in16
-rw-r--r--java/src/hdf/hdf5lib/HDF5Constants.java4
-rw-r--r--java/test/junit.sh.in13
6 files changed, 49 insertions, 32 deletions
diff --git a/java/examples/datasets/JavaDatasetExample.sh.in b/java/examples/datasets/JavaDatasetExample.sh.in
index 9a5ddd8..b299ff2 100644
--- a/java/examples/datasets/JavaDatasetExample.sh.in
+++ b/java/examples/datasets/JavaDatasetExample.sh.in
@@ -29,6 +29,7 @@ CMP='cmp'
DIFF='diff -c'
CP='cp'
DIRNAME='dirname'
+BASENAME='basename'
LS='ls'
AWK='awk'
@@ -103,17 +104,21 @@ COPY_LIBFILES_TO_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDLIBDIR
+ $CP -fR $tstfile $BLDLIBDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
# Comment out this to CREATE expected file
exit $EXIT_FAILURE
fi
+ BNAME=`$BASENAME $tstfile`
+ if [ "$BNAME" = "libhdf5_java.dylib" ]; then
+ COPIED_LIBHDF5_JAVA=1
+ fi
fi
fi
done
- if [ "$IS_DARWIN" = "yes" ]; then
+ if [[ "$IS_DARWIN" = "yes" ]] && [[ $COPIED_LIBHDF5_JAVA -eq 1 ]]; then
(cd $BLDLIBDIR; \
install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
@@ -134,7 +139,7 @@ COPY_LIBFILES_TO_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDLIBDIR
+ $CP -fR $tstfile $BLDLIBDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
@@ -155,10 +160,7 @@ CLEAN_LIBFILES_AND_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- for tstfile in $COPY_JARTESTFILES
- do
- $RM $BLDLIBDIR/tstfile
- done
+ $RM -rf $BLDLIBDIR
fi
}
diff --git a/java/examples/datatypes/JavaDatatypeExample.sh.in b/java/examples/datatypes/JavaDatatypeExample.sh.in
index c6f5dbc..a82d883 100644
--- a/java/examples/datatypes/JavaDatatypeExample.sh.in
+++ b/java/examples/datatypes/JavaDatatypeExample.sh.in
@@ -26,6 +26,7 @@ CMP='cmp'
DIFF='diff -c'
CP='cp'
DIRNAME='dirname'
+BASENAME='basename'
LS='ls'
AWK='awk'
@@ -100,17 +101,21 @@ COPY_LIBFILES_TO_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDLIBDIR
+ $CP -fR $tstfile $BLDLIBDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
# Comment out this to CREATE expected file
exit $EXIT_FAILURE
fi
+ BNAME=`$BASENAME $tstfile`
+ if [ "$BNAME" = "libhdf5_java.dylib" ]; then
+ COPIED_LIBHDF5_JAVA=1
+ fi
fi
fi
done
- if [ "$IS_DARWIN" = "yes" ]; then
+ if [[ "$IS_DARWIN" = "yes" ]] && [[ $COPIED_LIBHDF5_JAVA -eq 1 ]]; then
(cd $BLDLIBDIR; \
install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
@@ -131,7 +136,7 @@ COPY_LIBFILES_TO_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDLIBDIR
+ $CP -fR $tstfile $BLDLIBDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
@@ -152,10 +157,7 @@ CLEAN_LIBFILES_AND_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- for tstfile in $COPY_JARTESTFILES
- do
- $RM $BLDLIBDIR/tstfile
- done
+ $RM -rf $BLDLIBDIR
fi
}
diff --git a/java/examples/groups/JavaGroupExample.sh.in b/java/examples/groups/JavaGroupExample.sh.in
index 86f90bf..1b84ed3 100644
--- a/java/examples/groups/JavaGroupExample.sh.in
+++ b/java/examples/groups/JavaGroupExample.sh.in
@@ -26,6 +26,7 @@ CMP='cmp'
DIFF='diff -c'
CP='cp'
DIRNAME='dirname'
+BASENAME='basename'
LS='ls'
AWK='awk'
@@ -95,17 +96,21 @@ COPY_LIBFILES_TO_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDLIBDIR
+ $CP -fR $tstfile $BLDLIBDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
# Comment out this to CREATE expected file
exit $EXIT_FAILURE
fi
+ BNAME=`$BASENAME $tstfile`
+ if [ "$BNAME" = "libhdf5_java.dylib" ]; then
+ COPIED_LIBHDF5_JAVA=1
+ fi
fi
fi
done
- if [ "$IS_DARWIN" = "yes" ]; then
+ if [[ "$IS_DARWIN" = "yes" ]] && [[ $COPIED_LIBHDF5_JAVA -eq 1 ]]; then
(cd $BLDLIBDIR; \
install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
@@ -126,7 +131,7 @@ COPY_LIBFILES_TO_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDLIBDIR
+ $CP -fR $tstfile $BLDLIBDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
@@ -147,10 +152,7 @@ CLEAN_LIBFILES_AND_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- for tstfile in $COPY_JARTESTFILES
- do
- $RM $BLDLIBDIR/tstfile
- done
+ $RM -rf $BLDLIBDIR
fi
}
diff --git a/java/examples/intro/JavaIntroExample.sh.in b/java/examples/intro/JavaIntroExample.sh.in
index a095f27..41ed694 100644
--- a/java/examples/intro/JavaIntroExample.sh.in
+++ b/java/examples/intro/JavaIntroExample.sh.in
@@ -26,6 +26,7 @@ CMP='cmp'
DIFF='diff -c'
CP='cp'
DIRNAME='dirname'
+BASENAME='basename'
LS='ls'
AWK='awk'
@@ -89,17 +90,21 @@ COPY_LIBFILES_TO_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDLIBDIR
+ $CP -fR $tstfile $BLDLIBDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
# Comment out this to CREATE expected file
exit $EXIT_FAILURE
fi
+ BNAME=`$BASENAME $tstfile`
+ if [ "$BNAME" = "libhdf5_java.dylib" ]; then
+ COPIED_LIBHDF5_JAVA=1
+ fi
fi
fi
done
- if [ "$IS_DARWIN" = "yes" ]; then
+ if [[ "$IS_DARWIN" = "yes" ]] && [[ $COPIED_LIBHDF5_JAVA -eq 1 ]]; then
(cd $BLDLIBDIR; \
install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
@@ -120,7 +125,7 @@ COPY_LIBFILES_TO_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDLIBDIR
+ $CP -fR $tstfile $BLDLIBDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
@@ -141,10 +146,7 @@ CLEAN_LIBFILES_AND_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- for tstfile in $COPY_JARTESTFILES
- do
- $RM $BLDLIBDIR/tstfile
- done
+ $RM -rf $BLDLIBDIR
fi
}
diff --git a/java/src/hdf/hdf5lib/HDF5Constants.java b/java/src/hdf/hdf5lib/HDF5Constants.java
index 63e5262..1b85c1f 100644
--- a/java/src/hdf/hdf5lib/HDF5Constants.java
+++ b/java/src/hdf/hdf5lib/HDF5Constants.java
@@ -914,6 +914,8 @@ public class HDF5Constants {
/** */
public static final int H5R_OBJ_REF_BUF_SIZE = H5R_OBJ_REF_BUF_SIZE();
/** */
+ public static final int H5R_DSET_REG_REF_BUF_SIZE = H5R_DSET_REG_REF_BUF_SIZE();
+ /** */
public static final int H5R_OBJECT = H5R_OBJECT();
/** */
public static final int H5R_OBJECT1 = H5R_OBJECT1();
@@ -2395,6 +2397,8 @@ public class HDF5Constants {
private static native final int H5R_OBJ_REF_BUF_SIZE();
+ private static native final int H5R_DSET_REG_REF_BUF_SIZE();
+
private static native final int H5R_OBJECT();
private static native final int H5R_OBJECT1();
diff --git a/java/test/junit.sh.in b/java/test/junit.sh.in
index ca2b3a9..4e5152b 100644
--- a/java/test/junit.sh.in
+++ b/java/test/junit.sh.in
@@ -31,6 +31,7 @@ CMP='cmp'
DIFF='diff -c'
CP='cp'
DIRNAME='dirname'
+BASENAME='basename'
LS='ls'
AWK='awk'
@@ -141,17 +142,21 @@ COPY_LIBFILES_TO_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDLIBDIR
+ $CP -fR $tstfile $BLDLIBDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
# Comment out this to CREATE expected file
exit $EXIT_FAILURE
fi
+ BNAME=`$BASENAME $tstfile`
+ if [ "$BNAME" = "libhdf5_java.dylib" ]; then
+ COPIED_LIBHDF5_JAVA=1
+ fi
fi
fi
done
- if [ "$IS_DARWIN" = "yes" ]; then
+ if [[ "$IS_DARWIN" = "yes" ]] && [[ $COPIED_LIBHDF5_JAVA -eq 1 ]]; then
(cd testlibs; \
install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
@@ -172,7 +177,7 @@ COPY_LIBFILES_TO_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDLIBDIR
+ $CP -fR $tstfile $BLDLIBDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
@@ -195,7 +200,7 @@ COPY_LIBFILES_TO_BLDLIBDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDLIBDIR
+ $CP -fR $tstfile $BLDLIBDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."