diff options
author | Allen Byrne <byrn@hdfgroup.org> | 2017-04-21 15:41:50 (GMT) |
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committer | Allen Byrne <byrn@hdfgroup.org> | 2017-04-21 15:41:50 (GMT) |
commit | aeb1500897862ab8e0c500bd0a6986d229c4e5f2 (patch) | |
tree | 422757fe6b1a946a69c3d47b1a6ba4c8fc7dafba /java | |
parent | ae1144f8826dcecc68ec923bb7261f2a8153735c (diff) | |
parent | 3968c5c3bf16dc23a0a2ff1fa8d6c64dd2f8d32a (diff) | |
download | hdf5-aeb1500897862ab8e0c500bd0a6986d229c4e5f2.zip hdf5-aeb1500897862ab8e0c500bd0a6986d229c4e5f2.tar.gz hdf5-aeb1500897862ab8e0c500bd0a6986d229c4e5f2.tar.bz2 |
Merge remote-tracking branch 'origin/develop' into
bugfix/HDFFV-9655-plugin-path-relative
Diffstat (limited to 'java')
-rw-r--r-- | java/src/hdf/hdf5lib/H5.java | 85 | ||||
-rw-r--r-- | java/src/jni/Makefile.am | 2 | ||||
-rw-r--r-- | java/src/jni/exceptionImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5Constants.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5Imp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5aImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5dImp.c | 93 | ||||
-rw-r--r-- | java/src/jni/h5dImp.h | 9 | ||||
-rw-r--r-- | java/src/jni/h5eImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5fImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5gImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5iImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5jni.h | 2 | ||||
-rw-r--r-- | java/src/jni/h5lImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5oImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5pImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5plImp.c | 163 | ||||
-rw-r--r-- | java/src/jni/h5plImp.h | 63 | ||||
-rw-r--r-- | java/src/jni/h5rImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5sImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5tImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5util.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5util.h | 2 | ||||
-rw-r--r-- | java/src/jni/h5zImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/nativeData.c | 2 | ||||
-rw-r--r-- | java/test/JUnit-interface.txt | 3 | ||||
-rw-r--r-- | java/test/TestH5PL.java | 30 |
27 files changed, 463 insertions, 23 deletions
diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java index a1099d8..23e2a34 100644 --- a/java/src/hdf/hdf5lib/H5.java +++ b/java/src/hdf/hdf5lib/H5.java @@ -1798,6 +1798,9 @@ public class H5 implements java.io.Serializable { return H5Dread_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + public synchronized static native int H5DreadVL(long dataset_id, long mem_type_id, long mem_space_id, + long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException; + public synchronized static native int H5Dread_string(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException; @@ -7202,6 +7205,88 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native int H5PLget_loading_state() throws HDF5LibraryException; + /** + * H5PLappend inserts the plugin path at the end of the table. + * + * @param plugin_path + * IN: Path for location of filter plugin libraries. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native void H5PLappend(String plugin_path) throws HDF5LibraryException; + + /** + * H5PLprepend inserts the plugin path at the beginning of the table. + * + * @param plugin_path + * IN: Path for location of filter plugin libraries. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native void H5PLprepend(String plugin_path) throws HDF5LibraryException; + + /** + * H5PLreplace replaces the plugin path at the specified index. + * + * @param plugin_path + * IN: Path for location of filter plugin libraries. + * @param index + * IN: The table index (0-based). + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native void H5PLreplace(String plugin_path, int index) throws HDF5LibraryException; + + /** + * H5PLinsert inserts the plugin path at the specified index. + * + * @param plugin_path + * IN: Path for location of filter plugin libraries. + * @param index + * IN: The table index (0-based). + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native void H5PLinsert(String plugin_path, int index) throws HDF5LibraryException; + + /** + * H5PLremove removes the plugin path at the specified index. + * + * @param index + * IN: The table index (0-based). + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native void H5PLremove(int index) throws HDF5LibraryException; + + /** + * H5PLget retrieves the plugin path at the specified index. + * + * @param index + * IN: The table index (0-based). + * + * @return the current path at the index in plugin path table + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native String H5PLget(int index) throws HDF5LibraryException; + + /** + * H5PLsize retrieves the size of the current list of plugin paths. + * + * @return the current number of paths in the plugin path table + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5PLsize() throws HDF5LibraryException; + // //////////////////////////////////////////////////////////// // // // H5R: HDF5 1.8 Reference API Functions // diff --git a/java/src/jni/Makefile.am b/java/src/jni/Makefile.am index 4667407..fdf6608 100644 --- a/java/src/jni/Makefile.am +++ b/java/src/jni/Makefile.am @@ -31,7 +31,7 @@ AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/java/src/jni $(JNIFLAGS) lib_LTLIBRARIES=libhdf5_java.la # Add libtool numbers to the HDF5 Java (JNI) library (from config/lt_vers.am) -libhdf5_java_la_LDFLAGS= -version-info $(LT_JAVA_VERS_INTERFACE):$(LT_JAVA_VERS_REVISION):$(LT_JAVA_VERS_AGE) $(AM_LDFLAGS) +libhdf5_java_la_LDFLAGS = -avoid-version -shared -export-dynamic -version-info $(LT_JAVA_VERS_INTERFACE):$(LT_JAVA_VERS_REVISION):$(LT_JAVA_VERS_AGE) $(AM_LDFLAGS) # Source files for the library libhdf5_java_la_SOURCES=exceptionImp.c h5Constants.c nativeData.c h5util.c h5Imp.c \ diff --git a/java/src/jni/exceptionImp.c b/java/src/jni/exceptionImp.c index 28eec21..d0e7790 100644 --- a/java/src/jni/exceptionImp.c +++ b/java/src/jni/exceptionImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c index c6aa16c..ddca853 100644 --- a/java/src/jni/h5Constants.c +++ b/java/src/jni/h5Constants.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5Imp.c b/java/src/jni/h5Imp.c index 7a24b6f..e548363 100644 --- a/java/src/jni/h5Imp.c +++ b/java/src/jni/h5Imp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c index 5af8aae..5445904 100644 --- a/java/src/jni/h5aImp.c +++ b/java/src/jni/h5aImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c index ed1db41..0bb015e 100644 --- a/java/src/jni/h5dImp.c +++ b/java/src/jni/h5dImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ @@ -55,6 +55,7 @@ extern jobject visit_callback; /* Local Prototypes */ /********************/ +static herr_t H5DreadVL_asstr (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); static herr_t H5DreadVL_str (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); static herr_t H5DreadVL_array (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); static herr_t H5DwriteVL_str (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); @@ -994,6 +995,96 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1double /* * Class: hdf_hdf5lib_H5 + * Method: H5DreadVL + * Signature: (JJJJJ[Ljava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5DreadVL + (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, + jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) +{ + herr_t status = -1; + htri_t isVlenStr=0; + + if (buf == NULL) { + h5nullArgument(env, "H5DreadVL: buf is NULL"); + } /* end if */ + else { + isVlenStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING); + + if (isVlenStr) + h5badArgument(env, "H5DreadVL: type is not variable length non-string"); + else + status = H5DreadVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id, + (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, buf); + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Dread_1VLStrings */ + +herr_t +H5DreadVL_asstr + (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf) +{ + jint i; + jint n; + jstring jstr; + h5str_t h5str; + hvl_t *rdata; + size_t size; + size_t max_len = 0; + herr_t status = -1; + + n = ENVPTR->GetArrayLength(ENVPAR buf); + rdata = (hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t)); + if (rdata == NULL) { + h5JNIFatalError(env, "H5DreadVL_notstr: failed to allocate buff for read"); + } /* end if */ + else { + status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, rdata); + + if (status < 0) { + H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata); + HDfree(rdata); + h5JNIFatalError(env, "H5DreadVL_notstr: failed to read data"); + } /* end if */ + else { + max_len = 1; + for (i=0; i < n; i++) { + if ((rdata + i)->len > max_len) + max_len = (rdata + i)->len; + } + + size = H5Tget_size(tid) * max_len; + HDmemset(&h5str, 0, sizeof(h5str_t)); + h5str_new(&h5str, 4 * size); + + if (h5str.s == NULL) { + H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata); + HDfree(rdata); + h5JNIFatalError(env, "H5DreadVL_notstr: failed to allocate buf"); + } /* end if */ + else { + for (i=0; i < n; i++) { + h5str.s[0] = '\0'; + h5str_sprintf(&h5str, did, tid, rdata+i, 0); + jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s); + ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr); + } /* end for */ + h5str_free(&h5str); + + H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata); + HDfree(rdata); + } /* end else */ + } /* end else */ + } /* end else */ + + return status; +} + +/* + * Class: hdf_hdf5lib_H5 * Method: H5Dread_string * Signature: (JJJJJ[Ljava/lang/String;)I */ diff --git a/java/src/jni/h5dImp.h b/java/src/jni/h5dImp.h index eb26265..e79c590 100644 --- a/java/src/jni/h5dImp.h +++ b/java/src/jni/h5dImp.h @@ -206,6 +206,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1double /* * Class: hdf_hdf5lib_H5 + * Method: H5DreadVL + * Signature: (JJJJJ[Ljava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5DreadVL +(JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jobjectArray); + +/* + * Class: hdf_hdf5lib_H5 * Method: H5Dread_string * Signature: (JJJJJ[Ljava/lang/String;)I */ diff --git a/java/src/jni/h5eImp.c b/java/src/jni/h5eImp.c index 6e05515..05a7848 100644 --- a/java/src/jni/h5eImp.c +++ b/java/src/jni/h5eImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5fImp.c b/java/src/jni/h5fImp.c index 058ba26..4f0e569 100644 --- a/java/src/jni/h5fImp.c +++ b/java/src/jni/h5fImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5gImp.c b/java/src/jni/h5gImp.c index c40ed64..d724475 100644 --- a/java/src/jni/h5gImp.c +++ b/java/src/jni/h5gImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5iImp.c b/java/src/jni/h5iImp.c index 71e1b71..9c946df 100644 --- a/java/src/jni/h5iImp.c +++ b/java/src/jni/h5iImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5jni.h b/java/src/jni/h5jni.h index 9414d31..cef3bd0 100644 --- a/java/src/jni/h5jni.h +++ b/java/src/jni/h5jni.h @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5lImp.c b/java/src/jni/h5lImp.c index 473b1c7..f7a9df1 100644 --- a/java/src/jni/h5lImp.c +++ b/java/src/jni/h5lImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5oImp.c b/java/src/jni/h5oImp.c index 24f6988..a33d1d7 100644 --- a/java/src/jni/h5oImp.c +++ b/java/src/jni/h5oImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5pImp.c b/java/src/jni/h5pImp.c index f39f0e6..c9bd4aa 100644 --- a/java/src/jni/h5pImp.c +++ b/java/src/jni/h5pImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5plImp.c b/java/src/jni/h5plImp.c index 59de3cf..09a1032 100644 --- a/java/src/jni/h5plImp.c +++ b/java/src/jni/h5plImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ @@ -61,6 +61,167 @@ Java_hdf_hdf5lib_H5_H5PLget_1loading_1state return (jint)plugin_type; } /* end Java_hdf_hdf5lib_H5_H5PLget_1loading_1state */ +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLappend + * Signature: (Ljava/lang/String;)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5PLappend + (JNIEnv *env, jclass clss, jobjectArray plugin_path) +{ + char *aName; + herr_t retVal = -1; + + PIN_JAVA_STRING(plugin_path, aName); + if (aName != NULL) { + retVal = H5PLappend(aName); + + UNPIN_JAVA_STRING(plugin_path, aName); + + if (retVal < 0) + h5libraryError(env); + } +} /* end Java_hdf_hdf5lib_H5_H5PLappend */ +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLprepend + * Signature: (Ljava/lang/String;)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5PLprepend + (JNIEnv *env, jclass clss, jobjectArray plugin_path) +{ + char *aName; + herr_t retVal = -1; + + PIN_JAVA_STRING(plugin_path, aName); + if (aName != NULL) { + retVal = H5PLprepend(aName); + + UNPIN_JAVA_STRING(plugin_path, aName); + + if (retVal < 0) + h5libraryError(env); + } +} /* end Java_hdf_hdf5lib_H5_H5PLprepend */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLreplace + * Signature: (Ljava/lang/String;I)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5PLreplace + (JNIEnv *env, jclass clss, jobjectArray plugin_path, jint index) +{ + char *aName; + herr_t retVal = -1; + + PIN_JAVA_STRING(plugin_path, aName); + if (aName != NULL) { + retVal = H5PLreplace(aName, index); + + UNPIN_JAVA_STRING(plugin_path, aName); + + if (retVal < 0) + h5libraryError(env); + } +} /* end Java_hdf_hdf5lib_H5_H5PLreplace */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLinsert + * Signature: (Ljava/lang/String;I)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5PLinsert + (JNIEnv *env, jclass clss, jobjectArray plugin_path, jint index) +{ + char *aName; + herr_t retVal = -1; + + PIN_JAVA_STRING(plugin_path, aName); + if (aName != NULL) { + retVal = H5PLinsert(aName, index); + + UNPIN_JAVA_STRING(plugin_path, aName); + + if (retVal < 0) + h5libraryError(env); + } +} /* end Java_hdf_hdf5lib_H5_H5PLinsert */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLremove + * Signature: (I)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5PLremove + (JNIEnv *env, jclass clss, jint index) +{ + if (H5PLremove(index) < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5PLremove */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLget + * Signature: (I)Ljava/lang/String; + */ +JNIEXPORT jstring JNICALL +Java_hdf_hdf5lib_H5_H5PLget + (JNIEnv *env, jclass clss, jint index) +{ + char *aName; + jstring str = NULL; + ssize_t buf_size; + + /* get the length of the name */ + buf_size = H5PLget(index, NULL, 0); + + if (buf_size <= 0) { + h5badArgument(env, "H5PLget: buf_size <= 0"); + } /* end if */ + else { + buf_size++; /* add extra space for the null terminator */ + aName = (char*)HDmalloc(sizeof(char) * (size_t)buf_size); + if (aName == NULL) { + h5outOfMemory(env, "H5PLget: malloc failed"); + } /* end if */ + else { + buf_size = H5PLget(index, aName, (size_t)buf_size); + if (buf_size < 0) { + h5libraryError(env); + } /* end if */ + else { + str = ENVPTR->NewStringUTF(ENVPAR aName); + } + HDfree(aName); + } + } + return str; +} /* end Java_hdf_hdf5lib_H5_H5PLget */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLsize + * Signature: (V)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5PLsize + (JNIEnv *env, jclass clss) +{ + int retVal = -1; + + retVal = H5PLsize(); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5PLsize */ + #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5plImp.h b/java/src/jni/h5plImp.h index d0507a8..5326a94 100644 --- a/java/src/jni/h5plImp.h +++ b/java/src/jni/h5plImp.h @@ -41,6 +41,69 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5PLget_1loading_1state (JNIEnv *, jclass); +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLappend + * Signature: (Ljava/lang/String;)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5PLappend + (JNIEnv *, jclass, jobjectArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLprepend + * Signature: (Ljava/lang/String;)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5PLprepend + (JNIEnv *, jclass, jobjectArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLreplace + * Signature: (Ljava/lang/String;I)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5PLreplace + (JNIEnv *, jclass, jobjectArray, jint); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLinsert + * Signature: (Ljava/lang/String;I)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5PLinsert + (JNIEnv *, jclass, jobjectArray, jint); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLremove + * Signature: (I)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5PLremove + (JNIEnv *, jclass, jint); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLget + * Signature: (I)Ljava/lang/String; + */ +JNIEXPORT jstring JNICALL +Java_hdf_hdf5lib_H5_H5PLget + (JNIEnv *, jclass, jint); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5PLsize + * Signature: (V)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5PLsize + (JNIEnv *, jclass); + #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5rImp.c b/java/src/jni/h5rImp.c index 647f973..3dcbb8d 100644 --- a/java/src/jni/h5rImp.c +++ b/java/src/jni/h5rImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ #ifdef __cplusplus diff --git a/java/src/jni/h5sImp.c b/java/src/jni/h5sImp.c index d996ae5..929f6d6 100644 --- a/java/src/jni/h5sImp.c +++ b/java/src/jni/h5sImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5tImp.c b/java/src/jni/h5tImp.c index 1467b41..26f9b5c 100644 --- a/java/src/jni/h5tImp.c +++ b/java/src/jni/h5tImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c index 0d2999a..17ed35e 100644 --- a/java/src/jni/h5util.c +++ b/java/src/jni/h5util.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5util.h b/java/src/jni/h5util.h index f690e8b..6194378 100644 --- a/java/src/jni/h5util.h +++ b/java/src/jni/h5util.h @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/h5zImp.c b/java/src/jni/h5zImp.c index 2c8d8c3..247d1cc 100644 --- a/java/src/jni/h5zImp.c +++ b/java/src/jni/h5zImp.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ diff --git a/java/src/jni/nativeData.c b/java/src/jni/nativeData.c index 8388c99..a123e0f 100644 --- a/java/src/jni/nativeData.c +++ b/java/src/jni/nativeData.c @@ -15,7 +15,7 @@ /* * For details of the HDF libraries, see the HDF Documentation at: - * http://hdfdfgroup.org/HDF5/doc/ + * http://hdfgroup.org/HDF5/doc/ * */ /* diff --git a/java/test/JUnit-interface.txt b/java/test/JUnit-interface.txt index cae8cef..ab2f3b1 100644 --- a/java/test/JUnit-interface.txt +++ b/java/test/JUnit-interface.txt @@ -633,13 +633,14 @@ JUnit version 4.11 .testH5Ocomment_clear .testH5Ocopy_cur_not_exists .TestH5PLplugins +.TestH5PLpaths .testH5Zfilter_avail .testH5Zunregister_predefined .testH5Zget_filter_info Time: XXXX -OK (637 tests) +OK (638 tests) HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Fopen(): can't set access and transfer property lists diff --git a/java/test/TestH5PL.java b/java/test/TestH5PL.java index 9f1876c..759db5f 100644 --- a/java/test/TestH5PL.java +++ b/java/test/TestH5PL.java @@ -69,6 +69,36 @@ public class TestH5PL { } } + @Test + public void TestH5PLpaths() { + try { + int original_entries = H5.H5PLsize(); + H5.H5PLappend("path_one"); + int plugin_entries = H5.H5PLsize(); + assertTrue("H5.H5PLsize: "+plugin_entries, (original_entries+1) == plugin_entries); + H5.H5PLprepend("path_two"); + plugin_entries = H5.H5PLsize(); + assertTrue("H5.H5PLsize: "+plugin_entries, (original_entries+2) == plugin_entries); + H5.H5PLinsert("path_three", original_entries); + plugin_entries = H5.H5PLsize(); + assertTrue("H5.H5PLsize: "+plugin_entries, (original_entries+3) == plugin_entries); + String first_path = H5.H5PLget(original_entries); + assertTrue("First path was : "+first_path + " ",first_path.compareToIgnoreCase("path_three")==0); + H5.H5PLreplace("path_four", original_entries); + first_path = H5.H5PLget(original_entries); + assertTrue("First path changed to : "+first_path + " ",first_path.compareToIgnoreCase("path_four")==0); + H5.H5PLremove(original_entries); + first_path = H5.H5PLget(original_entries); + assertTrue("First path now : "+first_path + " ",first_path.compareToIgnoreCase("path_two")==0); + plugin_entries = H5.H5PLsize(); + assertTrue("H5.H5PLsize: "+plugin_entries, (original_entries+2) == plugin_entries); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5PLpaths " + err); + } + } + @Ignore public void TestH5PLdlopen() { long file_id = -1; |