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authorAllen Byrne <50328838+byrnHDF@users.noreply.github.com>2022-04-19 18:08:09 (GMT)
committerGitHub <noreply@github.com>2022-04-19 18:08:09 (GMT)
commit03c3a5469542688a52d5a20242d2334408f8ba33 (patch)
tree46e30ea4aa99b68279fe80c9ad56b1a6bbfcfe7c /java
parent32ef796e470da3e4de364d8dc469b03f5f6fafdc (diff)
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Develop clang format java (#1653)
Diffstat (limited to 'java')
-rw-r--r--java/examples/datasets/CMakeLists.txt7
-rw-r--r--java/examples/datasets/H5Ex_D_Alloc.java66
-rw-r--r--java/examples/datasets/H5Ex_D_Checksum.java100
-rw-r--r--java/examples/datasets/H5Ex_D_Chunk.java101
-rw-r--r--java/examples/datasets/H5Ex_D_Compact.java66
-rw-r--r--java/examples/datasets/H5Ex_D_External.java51
-rw-r--r--java/examples/datasets/H5Ex_D_FillValue.java73
-rw-r--r--java/examples/datasets/H5Ex_D_Gzip.java105
-rw-r--r--java/examples/datasets/H5Ex_D_Hyperslab.java70
-rw-r--r--java/examples/datasets/H5Ex_D_Nbit.java113
-rw-r--r--java/examples/datasets/H5Ex_D_ReadWrite.java41
-rw-r--r--java/examples/datasets/H5Ex_D_Shuffle.java112
-rw-r--r--java/examples/datasets/H5Ex_D_Sofloat.java114
-rw-r--r--java/examples/datasets/H5Ex_D_Soint.java110
-rw-r--r--java/examples/datasets/H5Ex_D_Szip.java107
-rw-r--r--java/examples/datasets/H5Ex_D_Transform.java55
-rw-r--r--java/examples/datasets/H5Ex_D_UnlimitedAdd.java85
-rw-r--r--java/examples/datasets/H5Ex_D_UnlimitedGzip.java138
-rw-r--r--java/examples/datasets/H5Ex_D_UnlimitedMod.java81
-rw-r--r--java/examples/datatypes/CMakeLists.txt7
-rw-r--r--java/examples/datatypes/H5Ex_T_Array.java63
-rw-r--r--java/examples/datatypes/H5Ex_T_ArrayAttribute.java67
-rw-r--r--java/examples/datatypes/H5Ex_T_Bit.java51
-rw-r--r--java/examples/datatypes/H5Ex_T_BitAttribute.java52
-rw-r--r--java/examples/datatypes/H5Ex_T_Commit.java100
-rw-r--r--java/examples/datatypes/H5Ex_T_Compound.java152
-rw-r--r--java/examples/datatypes/H5Ex_T_CompoundAttribute.java154
-rw-r--r--java/examples/datatypes/H5Ex_T_Float.java51
-rw-r--r--java/examples/datatypes/H5Ex_T_FloatAttribute.java54
-rw-r--r--java/examples/datatypes/H5Ex_T_Integer.java47
-rw-r--r--java/examples/datatypes/H5Ex_T_IntegerAttribute.java48
-rw-r--r--java/examples/datatypes/H5Ex_T_ObjectReference.java144
-rw-r--r--java/examples/datatypes/H5Ex_T_ObjectReferenceAttribute.java160
-rw-r--r--java/examples/datatypes/H5Ex_T_Opaque.java59
-rw-r--r--java/examples/datatypes/H5Ex_T_OpaqueAttribute.java59
-rw-r--r--java/examples/datatypes/H5Ex_T_String.java71
-rw-r--r--java/examples/datatypes/H5Ex_T_StringAttribute.java73
-rw-r--r--java/examples/datatypes/H5Ex_T_VLString.java50
-rw-r--r--java/examples/groups/CMakeLists.txt7
-rw-r--r--java/examples/groups/H5Ex_G_Compact.java52
-rw-r--r--java/examples/groups/H5Ex_G_Corder.java56
-rw-r--r--java/examples/groups/H5Ex_G_Create.java19
-rw-r--r--java/examples/groups/H5Ex_G_Intermediate.java42
-rw-r--r--java/examples/groups/H5Ex_G_Iterate.java52
-rw-r--r--java/examples/groups/H5Ex_G_Phase.java73
-rw-r--r--java/examples/groups/H5Ex_G_Traverse.java45
-rw-r--r--java/examples/groups/H5Ex_G_Visit.java53
-rw-r--r--java/examples/intro/CMakeLists.txt7
-rw-r--r--java/examples/intro/H5_CreateAttribute.java38
-rw-r--r--java/examples/intro/H5_CreateDataset.java28
-rw-r--r--java/examples/intro/H5_CreateFile.java11
-rw-r--r--java/examples/intro/H5_CreateGroup.java19
-rw-r--r--java/examples/intro/H5_CreateGroupAbsoluteRelative.java27
-rw-r--r--java/examples/intro/H5_CreateGroupDataset.java68
-rw-r--r--java/examples/intro/H5_ReadWrite.java35
-rw-r--r--java/src/hdf/hdf5lib/CMakeLists.txt3
-rw-r--r--java/src/hdf/hdf5lib/H5.java5633
-rw-r--r--java/src/hdf/hdf5lib/HDF5Constants.java84
-rw-r--r--java/src/hdf/hdf5lib/HDF5GroupInfo.java116
-rw-r--r--java/src/hdf/hdf5lib/HDFArray.java467
-rw-r--r--java/src/hdf/hdf5lib/HDFNativeData.java95
-rw-r--r--java/src/hdf/hdf5lib/callbacks/Callbacks.java4
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java7
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5D_append_t.java7
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java7
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java7
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java1
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java1
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java7
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java7
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java7
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java7
-rw-r--r--java/src/hdf/hdf5lib/callbacks/package-info.java3
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5AttributeException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5BtreeException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5DataFiltersException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5DataStorageException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5Exception.java10
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5FileInterfaceException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5FunctionArgumentException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5HeapException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5IdException.java9
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5InternalErrorException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5JavaException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java35
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5LowLevelIOException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5MetaDataCacheException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5ObjectHeaderException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5PropertyListInterfaceException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5SymbolTableException.java8
-rw-r--r--java/src/hdf/hdf5lib/package-info.java99
-rw-r--r--java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java144
-rw-r--r--java/src/hdf/hdf5lib/structs/H5A_info_t.java11
-rw-r--r--java/src/hdf/hdf5lib/structs/H5E_error2_t.java24
-rw-r--r--java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java48
-rw-r--r--java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java35
-rw-r--r--java/src/hdf/hdf5lib/structs/H5F_info2_t.java36
-rw-r--r--java/src/hdf/hdf5lib/structs/H5G_info_t.java2
-rw-r--r--java/src/hdf/hdf5lib/structs/H5L_info_t.java36
-rw-r--r--java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java28
-rw-r--r--java/src/hdf/hdf5lib/structs/H5O_info_t.java39
-rw-r--r--java/src/hdf/hdf5lib/structs/H5O_native_info_t.java19
-rw-r--r--java/src/hdf/hdf5lib/structs/H5O_token_t.java13
-rw-r--r--java/src/hdf/hdf5lib/structs/H5_ih_info_t.java13
-rw-r--r--java/src/hdf/hdf5lib/structs/package-info.java3
-rw-r--r--java/test/CMakeLists.txt7
-rw-r--r--java/test/TestAll.java26
-rw-r--r--java/test/TestH5.java397
-rw-r--r--java/test/TestH5A.java1028
-rw-r--r--java/test/TestH5Arw.java169
-rw-r--r--java/test/TestH5D.java555
-rw-r--r--java/test/TestH5Dparams.java69
-rw-r--r--java/test/TestH5Dplist.java268
-rw-r--r--java/test/TestH5Drw.java161
-rw-r--r--java/test/TestH5E.java125
-rw-r--r--java/test/TestH5Edefault.java161
-rw-r--r--java/test/TestH5Eparams.java71
-rw-r--r--java/test/TestH5Eregister.java27
-rw-r--r--java/test/TestH5F.java173
-rw-r--r--java/test/TestH5Fbasic.java110
-rw-r--r--java/test/TestH5Fparams.java112
-rw-r--r--java/test/TestH5Fswmr.java49
-rw-r--r--java/test/TestH5G.java317
-rw-r--r--java/test/TestH5Gbasic.java311
-rw-r--r--java/test/TestH5Giterate.java71
-rw-r--r--java/test/TestH5Lbasic.java234
-rw-r--r--java/test/TestH5Lcreate.java550
-rw-r--r--java/test/TestH5Lparams.java129
-rw-r--r--java/test/TestH5Obasic.java480
-rw-r--r--java/test/TestH5Ocopy.java352
-rw-r--r--java/test/TestH5OcopyOld.java391
-rw-r--r--java/test/TestH5Ocreate.java329
-rw-r--r--java/test/TestH5Oparams.java111
-rw-r--r--java/test/TestH5P.java694
-rw-r--r--java/test/TestH5PData.java151
-rw-r--r--java/test/TestH5PL.java142
-rw-r--r--java/test/TestH5Pfapl.java790
-rw-r--r--java/test/TestH5Pfaplhdfs.java64
-rw-r--r--java/test/TestH5Pfapls3.java67
-rw-r--r--java/test/TestH5Plist.java752
-rw-r--r--java/test/TestH5Pvirtual.java364
-rw-r--r--java/test/TestH5R.java414
-rw-r--r--java/test/TestH5Rref.java797
-rw-r--r--java/test/TestH5S.java313
-rw-r--r--java/test/TestH5Sbasic.java279
-rw-r--r--java/test/TestH5T.java429
-rw-r--r--java/test/TestH5Tbasic.java99
-rw-r--r--java/test/TestH5Tparams.java231
-rw-r--r--java/test/TestH5VL.java70
-rw-r--r--java/test/TestH5Z.java58
157 files changed, 13343 insertions, 10078 deletions
diff --git a/java/examples/datasets/CMakeLists.txt b/java/examples/datasets/CMakeLists.txt
index 8198135..e63ead0 100644
--- a/java/examples/datasets/CMakeLists.txt
+++ b/java/examples/datasets/CMakeLists.txt
@@ -62,6 +62,13 @@ foreach (example ${HDF_JAVA_EXAMPLES})
# install_jar (${example} ${HJAVA_INSTALL_DATA_DIR}/examples examples)
get_target_property (${example}_CLASSPATH ${example} CLASSDIR)
add_dependencies (${example} ${HDF5_JAVA_HDF5_LIB_TARGET})
+
+ #-----------------------------------------------------------------------------
+ # Add Target to clang-format
+ #-----------------------------------------------------------------------------
+ if (HDF5_ENABLE_FORMATTERS)
+ clang_format (HDF5_JAVA_${example}_SRC_FORMAT ${example}.java)
+ endif ()
endforeach ()
set (CMAKE_JAVA_INCLUDE_PATH "${HDF5_JAVA_JARS};${HDF5_JAVA_LOGGING_JAR};${HDF5_JAVA_LOGGING_NOP_JAR}")
diff --git a/java/examples/datasets/H5Ex_D_Alloc.java b/java/examples/datasets/H5Ex_D_Alloc.java
index 4e10c23..4853cc0 100644
--- a/java/examples/datasets/H5Ex_D_Alloc.java
+++ b/java/examples/datasets/H5Ex_D_Alloc.java
@@ -29,49 +29,47 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Alloc {
- private static String FILENAME = "H5Ex_D_Alloc.h5";
+ private static String FILENAME = "H5Ex_D_Alloc.h5";
private static String DATASETNAME1 = "DS1";
private static String DATASETNAME2 = "DS2";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 7;
- private static final int FILLVAL = 99;
- private static final int RANK = 2;
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 7;
+ private static final int FILLVAL = 99;
+ private static final int RANK = 2;
// Values for the status of space allocation
enum H5D_space_status {
- H5D_SPACE_STATUS_ERROR(-1), H5D_SPACE_STATUS_NOT_ALLOCATED(0), H5D_SPACE_STATUS_PART_ALLOCATED(1), H5D_SPACE_STATUS_ALLOCATED(
- 2);
+ H5D_SPACE_STATUS_ERROR(-1),
+ H5D_SPACE_STATUS_NOT_ALLOCATED(0),
+ H5D_SPACE_STATUS_PART_ALLOCATED(1),
+ H5D_SPACE_STATUS_ALLOCATED(2);
private static final Map<Integer, H5D_space_status> lookup = new HashMap<Integer, H5D_space_status>();
- static {
+ static
+ {
for (H5D_space_status s : EnumSet.allOf(H5D_space_status.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5D_space_status(int space_status) {
- this.code = space_status;
- }
+ H5D_space_status(int space_status) { this.code = space_status; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5D_space_status get(int code) {
- return lookup.get(code);
- }
+ public static H5D_space_status get(int code) { return lookup.get(code); }
}
- private static void allocation() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void allocation()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id1 = HDF5Constants.H5I_INVALID_HID;
- long dataset_id2 = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
+ long dataset_id1 = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id2 = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
- int space_status = 0;
+ int space_status = 0;
long storage_size = 0;
// Initialize the dataset.
@@ -82,7 +80,7 @@ public class H5Ex_D_Alloc {
// Create a file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -125,7 +123,8 @@ public class H5Ex_D_Alloc {
try {
if ((file_id >= 0) && (filespace_id >= 0))
dataset_id1 = H5.H5Dcreate(file_id, DATASETNAME1, HDF5Constants.H5T_NATIVE_INT, filespace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -135,7 +134,7 @@ public class H5Ex_D_Alloc {
try {
if ((file_id >= 0) && (filespace_id >= 0) && (dcpl_id >= 0))
dataset_id2 = H5.H5Dcreate(file_id, DATASETNAME2, HDF5Constants.H5T_NATIVE_INT, filespace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -190,16 +189,16 @@ public class H5Ex_D_Alloc {
// Write the data to the datasets.
try {
if (dataset_id1 >= 0)
- H5.H5Dwrite(dataset_id1, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data[0]);
+ H5.H5Dwrite(dataset_id1, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data[0]);
}
catch (Exception e) {
e.printStackTrace();
}
try {
if (dataset_id2 >= 0)
- H5.H5Dwrite(dataset_id2, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data[0]);
+ H5.H5Dwrite(dataset_id2, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data[0]);
}
catch (Exception e) {
e.printStackTrace();
@@ -291,8 +290,5 @@ public class H5Ex_D_Alloc {
}
}
- public static void main(String[] args) {
- H5Ex_D_Alloc.allocation();
- }
-
+ public static void main(String[] args) { H5Ex_D_Alloc.allocation(); }
}
diff --git a/java/examples/datasets/H5Ex_D_Checksum.java b/java/examples/datasets/H5Ex_D_Checksum.java
index 781dd68..7b01176 100644
--- a/java/examples/datasets/H5Ex_D_Checksum.java
+++ b/java/examples/datasets/H5Ex_D_Checksum.java
@@ -30,42 +30,46 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Checksum {
- private static String FILENAME = "H5Ex_D_Checksum.h5";
+ private static String FILENAME = "H5Ex_D_Checksum.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 32;
- private static final int DIM_Y = 64;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 8;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
+ private static final int DIM_X = 32;
+ private static final int DIM_Y = 64;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 8;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
// Values for the status of space allocation
enum H5Z_filter {
- H5Z_FILTER_ERROR(-1), H5Z_FILTER_NONE(0), H5Z_FILTER_DEFLATE(1), H5Z_FILTER_SHUFFLE(2), H5Z_FILTER_FLETCHER32(3), H5Z_FILTER_SZIP(
- 4), H5Z_FILTER_NBIT(5), H5Z_FILTER_SCALEOFFSET(6), H5Z_FILTER_RESERVED(256), H5Z_FILTER_MAX(65535);
+ H5Z_FILTER_ERROR(-1),
+ H5Z_FILTER_NONE(0),
+ H5Z_FILTER_DEFLATE(1),
+ H5Z_FILTER_SHUFFLE(2),
+ H5Z_FILTER_FLETCHER32(3),
+ H5Z_FILTER_SZIP(4),
+ H5Z_FILTER_NBIT(5),
+ H5Z_FILTER_SCALEOFFSET(6),
+ H5Z_FILTER_RESERVED(256),
+ H5Z_FILTER_MAX(65535);
private static final Map<Integer, H5Z_filter> lookup = new HashMap<Integer, H5Z_filter>();
- static {
+ static
+ {
for (H5Z_filter s : EnumSet.allOf(H5Z_filter.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5Z_filter(int layout_type) {
- this.code = layout_type;
- }
+ H5Z_filter(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5Z_filter get(int code) {
- return lookup.get(code);
- }
+ public static H5Z_filter get(int code) { return lookup.get(code); }
}
- private static boolean checkFletcher32Filter() {
+ private static boolean checkFletcher32Filter()
+ {
try {
int available = H5.H5Zfilter_avail(H5Z_filter.H5Z_FILTER_FLETCHER32.getCode());
if (available == 0) {
@@ -79,8 +83,8 @@ public class H5Ex_D_Checksum {
try {
int filter_info = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_FLETCHER32);
- if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0)
- || ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
+ if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0) ||
+ ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
System.out.println("N-Bit filter not available for encoding and decoding.");
return false;
}
@@ -91,13 +95,14 @@ public class H5Ex_D_Checksum {
return true;
}
- private static void writeChecksum() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void writeChecksum()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize data.
@@ -108,7 +113,7 @@ public class H5Ex_D_Checksum {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -140,7 +145,7 @@ public class H5Ex_D_Checksum {
try {
if ((file_id >= 0) && (filespace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, filespace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -149,8 +154,8 @@ public class H5Ex_D_Checksum {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -191,10 +196,11 @@ public class H5Ex_D_Checksum {
}
}
- private static void readChecksum() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readChecksum()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
@@ -228,14 +234,14 @@ public class H5Ex_D_Checksum {
try {
if (dcpl_id >= 0) {
// Java lib requires a valid filter_name object and cd_values
- int[] flags = { 0 };
- long[] cd_nelmts = { 1 };
- int[] cd_values = { 0 };
- String[] filter_name = { "" };
- int[] filter_config = { 0 };
- int filter_type = -1;
- filter_type = H5
- .H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name, filter_config);
+ int[] flags = {0};
+ long[] cd_nelmts = {1};
+ int[] cd_values = {0};
+ String[] filter_name = {""};
+ int[] filter_config = {0};
+ int filter_type = -1;
+ filter_type = H5.H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name,
+ filter_config);
System.out.print("Filter type is: ");
switch (H5Z_filter.get(filter_type)) {
case H5Z_FILTER_DEFLATE:
@@ -264,7 +270,7 @@ public class H5Ex_D_Checksum {
try {
if (dataset_id >= 0) {
int status = H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
- HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
// Check if the read was successful. Normally we do not perform
// error checking in these examples for the sake of clarity, but in
// this case we will make an exception because this is how the
@@ -328,7 +334,8 @@ public class H5Ex_D_Checksum {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
// Check if the Fletcher32 filter is available and can be used for
// both encoding and decoding. Normally we do not perform error
// checking in these examples for the sake of clarity, but in this
@@ -340,5 +347,4 @@ public class H5Ex_D_Checksum {
H5Ex_D_Checksum.readChecksum();
}
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_Chunk.java b/java/examples/datasets/H5Ex_D_Chunk.java
index 2ddf293..fbfc148 100644
--- a/java/examples/datasets/H5Ex_D_Chunk.java
+++ b/java/examples/datasets/H5Ex_D_Chunk.java
@@ -30,47 +30,48 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Chunk {
- private static String FILENAME = "H5Ex_D_Chunk.h5";
+ private static String FILENAME = "H5Ex_D_Chunk.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 6;
- private static final int DIM_Y = 8;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 4;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
+ private static final int DIM_X = 6;
+ private static final int DIM_Y = 8;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 4;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
// Values for the status of space allocation
enum H5D_layout {
- H5D_LAYOUT_ERROR(-1), H5D_COMPACT(0), H5D_CONTIGUOUS(1), H5D_CHUNKED(2), H5D_VIRTUAL(3), H5D_NLAYOUTS(4);
+ H5D_LAYOUT_ERROR(-1),
+ H5D_COMPACT(0),
+ H5D_CONTIGUOUS(1),
+ H5D_CHUNKED(2),
+ H5D_VIRTUAL(3),
+ H5D_NLAYOUTS(4);
private static final Map<Integer, H5D_layout> lookup = new HashMap<Integer, H5D_layout>();
- static {
+ static
+ {
for (H5D_layout s : EnumSet.allOf(H5D_layout.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5D_layout(int layout_type) {
- this.code = layout_type;
- }
+ H5D_layout(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5D_layout get(int code) {
- return lookup.get(code);
- }
+ public static H5D_layout get(int code) { return lookup.get(code); }
}
- private static void writeChunk() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void writeChunk()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize data to "1", to make it easier to see the selections.
@@ -91,7 +92,7 @@ public class H5Ex_D_Chunk {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -127,20 +128,21 @@ public class H5Ex_D_Chunk {
try {
if ((file_id >= 0) && (filespace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, filespace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
}
// Define and select the first part of the hyperslab selection.
- long[] start = { 0, 0 };
- long[] stride = { 3, 3 };
- long[] count = { 2, 3 };
- long[] block = { 2, 2 };
+ long[] start = {0, 0};
+ long[] stride = {3, 3};
+ long[] count = {2, 3};
+ long[] block = {2, 2};
try {
if ((filespace_id >= 0))
- H5.H5Sselect_hyperslab(filespace_id, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
+ H5.H5Sselect_hyperslab(filespace_id, HDF5Constants.H5S_SELECT_SET, start, stride, count,
+ block);
}
catch (Exception e) {
e.printStackTrace();
@@ -152,12 +154,13 @@ public class H5Ex_D_Chunk {
block[1] = 1;
try {
if ((filespace_id >= 0)) {
- H5.H5Sselect_hyperslab(filespace_id, HDF5Constants.H5S_SELECT_NOTB, start, stride, count, block);
+ H5.H5Sselect_hyperslab(filespace_id, HDF5Constants.H5S_SELECT_NOTB, start, stride, count,
+ block);
// Write the data to the dataset.
if (dataset_id >= 0)
H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, filespace_id,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
}
catch (Exception e) {
@@ -199,11 +202,12 @@ public class H5Ex_D_Chunk {
}
}
- private static void readChunk() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readChunk()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
@@ -267,8 +271,8 @@ public class H5Ex_D_Chunk {
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -294,18 +298,19 @@ public class H5Ex_D_Chunk {
if (dataset_id >= 0) {
filespace_id = H5.H5Dget_space(dataset_id);
- long[] start = { 0, 1 };
- long[] stride = { 4, 4 };
- long[] count = { 2, 2 };
- long[] block = { 2, 3 };
+ long[] start = {0, 1};
+ long[] stride = {4, 4};
+ long[] count = {2, 2};
+ long[] block = {2, 3};
if (filespace_id >= 0) {
- H5.H5Sselect_hyperslab(filespace_id, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
+ H5.H5Sselect_hyperslab(filespace_id, HDF5Constants.H5S_SELECT_SET, start, stride, count,
+ block);
// Read the data using the previously defined hyperslab.
if ((dataset_id >= 0) && (filespace_id >= 0))
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, filespace_id,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ filespace_id, HDF5Constants.H5P_DEFAULT, dset_data);
}
}
}
@@ -358,9 +363,9 @@ public class H5Ex_D_Chunk {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_D_Chunk.writeChunk();
H5Ex_D_Chunk.readChunk();
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_Compact.java b/java/examples/datasets/H5Ex_D_Compact.java
index 0abf8da..3a60283 100644
--- a/java/examples/datasets/H5Ex_D_Compact.java
+++ b/java/examples/datasets/H5Ex_D_Compact.java
@@ -27,43 +27,44 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Compact {
- private static String FILENAME = "H5Ex_D_Compact.h5";
+ private static String FILENAME = "H5Ex_D_Compact.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 7;
- private static final int RANK = 2;
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 7;
+ private static final int RANK = 2;
// Values for the status of space allocation
enum H5D_layout {
- H5D_LAYOUT_ERROR(-1), H5D_COMPACT(0), H5D_CONTIGUOUS(1), H5D_CHUNKED(2), H5D_VIRTUAL(3), H5D_NLAYOUTS(4);
+ H5D_LAYOUT_ERROR(-1),
+ H5D_COMPACT(0),
+ H5D_CONTIGUOUS(1),
+ H5D_CHUNKED(2),
+ H5D_VIRTUAL(3),
+ H5D_NLAYOUTS(4);
private static final Map<Integer, H5D_layout> lookup = new HashMap<Integer, H5D_layout>();
- static {
+ static
+ {
for (H5D_layout s : EnumSet.allOf(H5D_layout.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5D_layout(int layout_type) {
- this.code = layout_type;
- }
+ H5D_layout(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5D_layout get(int code) {
- return lookup.get(code);
- }
+ public static H5D_layout get(int code) { return lookup.get(code); }
}
- private static void writeCompact() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void writeCompact()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize data.
@@ -74,7 +75,7 @@ public class H5Ex_D_Compact {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -110,7 +111,7 @@ public class H5Ex_D_Compact {
try {
if ((file_id >= 0) && (filespace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, filespace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -119,8 +120,8 @@ public class H5Ex_D_Compact {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -161,11 +162,12 @@ public class H5Ex_D_Compact {
}
}
- private static void readCompact() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readCompact()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open file and dataset using the default properties.
@@ -229,8 +231,8 @@ public class H5Ex_D_Compact {
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -281,9 +283,9 @@ public class H5Ex_D_Compact {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_D_Compact.writeCompact();
H5Ex_D_Compact.readCompact();
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_External.java b/java/examples/datasets/H5Ex_D_External.java
index 9c3787f..d706fb7 100644
--- a/java/examples/datasets/H5Ex_D_External.java
+++ b/java/examples/datasets/H5Ex_D_External.java
@@ -24,20 +24,21 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_External {
- private static String FILENAME = "H5Ex_D_External.h5";
- private static String EXTERNALNAME = "H5Ex_D_External.data";
- private static String DATASETNAME = "DS1";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 7;
- private static final int RANK = 2;
+ private static String FILENAME = "H5Ex_D_External.h5";
+ private static String EXTERNALNAME = "H5Ex_D_External.data";
+ private static String DATASETNAME = "DS1";
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 7;
+ private static final int RANK = 2;
private static final int NAME_BUF_SIZE = 32;
- private static void writeExternal() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ private static void writeExternal()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize the dataset.
@@ -48,7 +49,7 @@ public class H5Ex_D_External {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -84,7 +85,7 @@ public class H5Ex_D_External {
try {
if ((file_id >= 0) && (filespace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, filespace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -92,8 +93,8 @@ public class H5Ex_D_External {
// Write the dataset.
try {
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -133,15 +134,15 @@ public class H5Ex_D_External {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void readExternal() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readExternal()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
- String[] Xname = new String[1];
+ String[] Xname = new String[1];
// Open file using the default properties.
try {
@@ -183,8 +184,8 @@ public class H5Ex_D_External {
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -227,9 +228,9 @@ public class H5Ex_D_External {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_D_External.writeExternal();
H5Ex_D_External.readExternal();
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_FillValue.java b/java/examples/datasets/H5Ex_D_FillValue.java
index 3526993..db4dff7 100644
--- a/java/examples/datasets/H5Ex_D_FillValue.java
+++ b/java/examples/datasets/H5Ex_D_FillValue.java
@@ -26,29 +26,30 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_FillValue {
- private static String FILENAME = "H5Ex_D_FillValue.h5";
+ private static String FILENAME = "H5Ex_D_FillValue.h5";
private static String DATASETNAME = "ExtendibleArray";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 7;
- private static final int EDIM_X = 6;
- private static final int EDIM_Y = 10;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 4;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
- private static final int FILLVAL = 99;
-
- private static void fillValue() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] extdims = { EDIM_X, EDIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
- long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
- int[][] write_dset_data = new int[DIM_X][DIM_Y];
- int[][] read_dset_data = new int[DIM_X][DIM_Y];
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 7;
+ private static final int EDIM_X = 6;
+ private static final int EDIM_Y = 10;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 4;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
+ private static final int FILLVAL = 99;
+
+ private static void fillValue()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] extdims = {EDIM_X, EDIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
+ long[] maxdims = {HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED};
+ int[][] write_dset_data = new int[DIM_X][DIM_Y];
+ int[][] read_dset_data = new int[DIM_X][DIM_Y];
int[][] extend_dset_data = new int[EDIM_X][EDIM_Y];
// Initialize the dataset.
@@ -59,7 +60,7 @@ public class H5Ex_D_FillValue {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -92,7 +93,7 @@ public class H5Ex_D_FillValue {
// Set the fill value for the dataset
try {
- int[] fill_value = { FILLVAL };
+ int[] fill_value = {FILLVAL};
if (dcpl_id >= 0)
H5.H5Pset_fill_value(dcpl_id, HDF5Constants.H5T_NATIVE_INT, fill_value);
}
@@ -115,7 +116,7 @@ public class H5Ex_D_FillValue {
try {
if ((file_id >= 0) && (dataspace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -124,8 +125,8 @@ public class H5Ex_D_FillValue {
// Read values from the dataset, which has not been written to yet.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, read_dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, read_dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -144,8 +145,8 @@ public class H5Ex_D_FillValue {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, write_dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, write_dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -154,8 +155,8 @@ public class H5Ex_D_FillValue {
// Read the data back.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, read_dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, read_dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -183,8 +184,8 @@ public class H5Ex_D_FillValue {
// Read from the extended dataset.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, extend_dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, extend_dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -233,11 +234,7 @@ public class H5Ex_D_FillValue {
catch (Exception e) {
e.printStackTrace();
}
-
- }
-
- public static void main(String[] args) {
- H5Ex_D_FillValue.fillValue();
}
+ public static void main(String[] args) { H5Ex_D_FillValue.fillValue(); }
}
diff --git a/java/examples/datasets/H5Ex_D_Gzip.java b/java/examples/datasets/H5Ex_D_Gzip.java
index 404ff05..0a94254 100644
--- a/java/examples/datasets/H5Ex_D_Gzip.java
+++ b/java/examples/datasets/H5Ex_D_Gzip.java
@@ -29,45 +29,46 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Gzip {
- private static String FILENAME = "H5Ex_D_Gzip.h5";
+ private static String FILENAME = "H5Ex_D_Gzip.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 32;
- private static final int DIM_Y = 64;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 8;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
+ private static final int DIM_X = 32;
+ private static final int DIM_Y = 64;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 8;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
// Values for the status of space allocation
enum H5Z_filter {
- H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR), H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE), H5Z_FILTER_DEFLATE(
- HDF5Constants.H5Z_FILTER_DEFLATE), H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE), H5Z_FILTER_FLETCHER32(
- HDF5Constants.H5Z_FILTER_FLETCHER32), H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP), H5Z_FILTER_NBIT(
- HDF5Constants.H5Z_FILTER_NBIT), H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET), H5Z_FILTER_RESERVED(
- HDF5Constants.H5Z_FILTER_RESERVED), H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
+ H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR),
+ H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE),
+ H5Z_FILTER_DEFLATE(HDF5Constants.H5Z_FILTER_DEFLATE),
+ H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE),
+ H5Z_FILTER_FLETCHER32(HDF5Constants.H5Z_FILTER_FLETCHER32),
+ H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP),
+ H5Z_FILTER_NBIT(HDF5Constants.H5Z_FILTER_NBIT),
+ H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET),
+ H5Z_FILTER_RESERVED(HDF5Constants.H5Z_FILTER_RESERVED),
+ H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
private static final Map<Integer, H5Z_filter> lookup = new HashMap<Integer, H5Z_filter>();
- static {
+ static
+ {
for (H5Z_filter s : EnumSet.allOf(H5Z_filter.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5Z_filter(int layout_type) {
- this.code = layout_type;
- }
+ H5Z_filter(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5Z_filter get(int code) {
- return lookup.get(code);
- }
+ public static H5Z_filter get(int code) { return lookup.get(code); }
}
- private static boolean checkGzipFilter() {
+ private static boolean checkGzipFilter()
+ {
try {
int available = H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_DEFLATE);
if (available == 0) {
@@ -81,8 +82,8 @@ public class H5Ex_D_Gzip {
try {
int filter_info = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_DEFLATE);
- if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0)
- || ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
+ if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0) ||
+ ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
System.out.println("gzip filter not available for encoding and decoding.");
return false;
}
@@ -93,13 +94,14 @@ public class H5Ex_D_Gzip {
return true;
}
- private static void writeGzip() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void writeGzip()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize data.
@@ -110,7 +112,7 @@ public class H5Ex_D_Gzip {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -143,7 +145,7 @@ public class H5Ex_D_Gzip {
try {
if ((file_id >= 0) && (filespace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, filespace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -152,8 +154,8 @@ public class H5Ex_D_Gzip {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -194,10 +196,11 @@ public class H5Ex_D_Gzip {
}
}
- private static void readGzip() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readGzip()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
@@ -231,14 +234,14 @@ public class H5Ex_D_Gzip {
try {
if (dcpl_id >= 0) {
// Java lib requires a valid filter_name object and cd_values
- int[] flags = { 0 };
- long[] cd_nelmts = { 1 };
- int[] cd_values = { 0 };
- String[] filter_name = { "" };
- int[] filter_config = { 0 };
- int filter_type = -1;
- filter_type = H5
- .H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name, filter_config);
+ int[] flags = {0};
+ long[] cd_nelmts = {1};
+ int[] cd_values = {0};
+ String[] filter_name = {""};
+ int[] filter_config = {0};
+ int filter_type = -1;
+ filter_type = H5.H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name,
+ filter_config);
System.out.print("Filter type is: ");
switch (H5Z_filter.get(filter_type)) {
case H5Z_FILTER_DEFLATE:
@@ -272,8 +275,8 @@ public class H5Ex_D_Gzip {
// Read the data using the default properties.
try {
if (dataset_id >= 0) {
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
}
catch (Exception e) {
@@ -318,7 +321,8 @@ public class H5Ex_D_Gzip {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
// Check if gzip compression is available and can be used for both
// compression and decompression. Normally we do not perform error
// checking in these examples for the sake of clarity, but in this
@@ -329,5 +333,4 @@ public class H5Ex_D_Gzip {
H5Ex_D_Gzip.readGzip();
}
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_Hyperslab.java b/java/examples/datasets/H5Ex_D_Hyperslab.java
index fa3473f..0575d50 100644
--- a/java/examples/datasets/H5Ex_D_Hyperslab.java
+++ b/java/examples/datasets/H5Ex_D_Hyperslab.java
@@ -26,17 +26,18 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Hyperslab {
- private static String FILENAME = "H5Ex_D_Hyperslab.h5";
+ private static String FILENAME = "H5Ex_D_Hyperslab.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 6;
- private static final int DIM_Y = 8;
- private static final int RANK = 2;
+ private static final int DIM_X = 6;
+ private static final int DIM_Y = 8;
+ private static final int RANK = 2;
- private static void writeHyperslab() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void writeHyperslab()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize data to "1", to make it easier to see the selections.
@@ -57,7 +58,7 @@ public class H5Ex_D_Hyperslab {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -76,20 +77,22 @@ public class H5Ex_D_Hyperslab {
try {
if ((file_id >= 0) && (filespace_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, filespace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
}
// Define and select the first part of the hyperslab selection.
- long[] start = { 0, 0 };
- long[] stride = { 3, 3 };
- long[] count = { 2, 3 };
- long[] block = { 2, 2 };
+ long[] start = {0, 0};
+ long[] stride = {3, 3};
+ long[] count = {2, 3};
+ long[] block = {2, 2};
try {
if ((filespace_id >= 0))
- H5.H5Sselect_hyperslab(filespace_id, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
+ H5.H5Sselect_hyperslab(filespace_id, HDF5Constants.H5S_SELECT_SET, start, stride, count,
+ block);
}
catch (Exception e) {
e.printStackTrace();
@@ -101,12 +104,13 @@ public class H5Ex_D_Hyperslab {
block[1] = 1;
try {
if ((filespace_id >= 0)) {
- H5.H5Sselect_hyperslab(filespace_id, HDF5Constants.H5S_SELECT_NOTB, start, stride, count, block);
+ H5.H5Sselect_hyperslab(filespace_id, HDF5Constants.H5S_SELECT_NOTB, start, stride, count,
+ block);
// Write the data to the dataset.
if (dataset_id >= 0)
H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, filespace_id,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
}
catch (Exception e) {
@@ -140,11 +144,12 @@ public class H5Ex_D_Hyperslab {
}
}
- private static void readHyperslab() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readHyperslab()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
@@ -167,8 +172,8 @@ public class H5Ex_D_Hyperslab {
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -194,18 +199,19 @@ public class H5Ex_D_Hyperslab {
if (dataset_id >= 0) {
filespace_id = H5.H5Dget_space(dataset_id);
- long[] start = { 0, 1 };
- long[] stride = { 4, 4 };
- long[] count = { 2, 2 };
- long[] block = { 2, 3 };
+ long[] start = {0, 1};
+ long[] stride = {4, 4};
+ long[] count = {2, 2};
+ long[] block = {2, 3};
if (filespace_id >= 0) {
- H5.H5Sselect_hyperslab(filespace_id, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
+ H5.H5Sselect_hyperslab(filespace_id, HDF5Constants.H5S_SELECT_SET, start, stride, count,
+ block);
// Read the data using the previously defined hyperslab.
if ((dataset_id >= 0) && (filespace_id >= 0))
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, filespace_id,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ filespace_id, HDF5Constants.H5P_DEFAULT, dset_data);
}
}
}
@@ -258,9 +264,9 @@ public class H5Ex_D_Hyperslab {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_D_Hyperslab.writeHyperslab();
H5Ex_D_Hyperslab.readHyperslab();
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_Nbit.java b/java/examples/datasets/H5Ex_D_Nbit.java
index 35d23a9..d54ce21 100644
--- a/java/examples/datasets/H5Ex_D_Nbit.java
+++ b/java/examples/datasets/H5Ex_D_Nbit.java
@@ -29,45 +29,46 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Nbit {
- private static String FILENAME = "H5Ex_D_Nbit.h5";
+ private static String FILENAME = "H5Ex_D_Nbit.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 32;
- private static final int DIM_Y = 64;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 8;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
+ private static final int DIM_X = 32;
+ private static final int DIM_Y = 64;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 8;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
// Values for the status of space allocation
enum H5Z_filter {
- H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR), H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE), H5Z_FILTER_DEFLATE(
- HDF5Constants.H5Z_FILTER_DEFLATE), H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE), H5Z_FILTER_FLETCHER32(
- HDF5Constants.H5Z_FILTER_FLETCHER32), H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP), H5Z_FILTER_NBIT(
- HDF5Constants.H5Z_FILTER_NBIT), H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET), H5Z_FILTER_RESERVED(
- HDF5Constants.H5Z_FILTER_RESERVED), H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
+ H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR),
+ H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE),
+ H5Z_FILTER_DEFLATE(HDF5Constants.H5Z_FILTER_DEFLATE),
+ H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE),
+ H5Z_FILTER_FLETCHER32(HDF5Constants.H5Z_FILTER_FLETCHER32),
+ H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP),
+ H5Z_FILTER_NBIT(HDF5Constants.H5Z_FILTER_NBIT),
+ H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET),
+ H5Z_FILTER_RESERVED(HDF5Constants.H5Z_FILTER_RESERVED),
+ H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
private static final Map<Integer, H5Z_filter> lookup = new HashMap<Integer, H5Z_filter>();
- static {
+ static
+ {
for (H5Z_filter s : EnumSet.allOf(H5Z_filter.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5Z_filter(int layout_type) {
- this.code = layout_type;
- }
+ H5Z_filter(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5Z_filter get(int code) {
- return lookup.get(code);
- }
+ public static H5Z_filter get(int code) { return lookup.get(code); }
}
- private static boolean checkNbitFilter() {
+ private static boolean checkNbitFilter()
+ {
try {
// Check if N-Bit compression is available and can be used for both compression and decompression.
int available = H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_NBIT);
@@ -82,8 +83,8 @@ public class H5Ex_D_Nbit {
try {
int filter_info = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_NBIT);
- if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0)
- || ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
+ if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0) ||
+ ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
System.out.println("N-Bit filter not available for encoding and decoding.");
return false;
}
@@ -94,14 +95,15 @@ public class H5Ex_D_Nbit {
return true;
}
- private static void writeData() throws Exception {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void writeData() throws Exception
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dtype_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dtype_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize data.
@@ -112,7 +114,7 @@ public class H5Ex_D_Nbit {
try {
// Create a new file using the default properties.
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
// Create dataspace. Setting maximum size to NULL sets the maximum
// size to be the current size.
@@ -130,12 +132,12 @@ public class H5Ex_D_Nbit {
H5.H5Pset_chunk(dcpl_id, NDIMS, chunk_dims);
// Create the dataset.
- dataset_id = H5.H5Dcreate(file_id, DATASETNAME, dtype_id, filespace_id, HDF5Constants.H5P_DEFAULT, dcpl_id,
- HDF5Constants.H5P_DEFAULT);
+ dataset_id = H5.H5Dcreate(file_id, DATASETNAME, dtype_id, filespace_id, HDF5Constants.H5P_DEFAULT,
+ dcpl_id, HDF5Constants.H5P_DEFAULT);
// Write the data to the dataset.
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -155,10 +157,11 @@ public class H5Ex_D_Nbit {
}
}
- private static void readData() throws Exception {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readData() throws Exception
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
@@ -192,14 +195,14 @@ public class H5Ex_D_Nbit {
try {
if (dcpl_id >= 0) {
// Java lib requires a valid filter_name object and cd_values
- int[] flags = { 0 };
- long[] cd_nelmts = { 1 };
- int[] cd_values = { 0 };
- String[] filter_name = { "" };
- int[] filter_config = { 0 };
- int filter_type = -1;
- filter_type = H5
- .H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name, filter_config);
+ int[] flags = {0};
+ long[] cd_nelmts = {1};
+ int[] cd_values = {0};
+ String[] filter_name = {""};
+ int[] filter_config = {0};
+ int filter_type = -1;
+ filter_type = H5.H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name,
+ filter_config);
System.out.print("Filter type is: ");
switch (H5Z_filter.get(filter_type)) {
case H5Z_FILTER_DEFLATE:
@@ -234,7 +237,7 @@ public class H5Ex_D_Nbit {
try {
if (dataset_id >= 0) {
int status = H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
- HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
// Check if the read was successful.
if (status < 0)
System.out.print("Dataset read failed!");
@@ -280,14 +283,14 @@ public class H5Ex_D_Nbit {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
/*
- * Check if N-Bit compression is available and can be used for both compression and decompression. Normally we
- * do not perform error checking in these examples for the sake of clarity, but in this case we will make an
- * exception because this filter is an optional part of the hdf5 library.
+ * Check if N-Bit compression is available and can be used for both compression and decompression.
+ * Normally we do not perform error checking in these examples for the sake of clarity, but in this
+ * case we will make an exception because this filter is an optional part of the hdf5 library.
*/
try {
if (H5Ex_D_Nbit.checkNbitFilter()) {
diff --git a/java/examples/datasets/H5Ex_D_ReadWrite.java b/java/examples/datasets/H5Ex_D_ReadWrite.java
index db930d3..4b26a2c 100644
--- a/java/examples/datasets/H5Ex_D_ReadWrite.java
+++ b/java/examples/datasets/H5Ex_D_ReadWrite.java
@@ -24,17 +24,18 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_ReadWrite {
- private static String FILENAME = "H5Ex_D_ReadWrite.h5";
+ private static String FILENAME = "H5Ex_D_ReadWrite.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 7;
- private static final int RANK = 2;
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 7;
+ private static final int RANK = 2;
- private static void WriteDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void WriteDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize data.
@@ -45,7 +46,7 @@ public class H5Ex_D_ReadWrite {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -64,7 +65,8 @@ public class H5Ex_D_ReadWrite {
try {
if ((file_id >= 0) && (filespace_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, filespace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -73,8 +75,8 @@ public class H5Ex_D_ReadWrite {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -107,9 +109,10 @@ public class H5Ex_D_ReadWrite {
}
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open file using the default properties.
@@ -132,8 +135,8 @@ public class H5Ex_D_ReadWrite {
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -168,9 +171,9 @@ public class H5Ex_D_ReadWrite {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_D_ReadWrite.WriteDataset();
H5Ex_D_ReadWrite.ReadDataset();
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_Shuffle.java b/java/examples/datasets/H5Ex_D_Shuffle.java
index 1dd7c6a..54a77c7 100644
--- a/java/examples/datasets/H5Ex_D_Shuffle.java
+++ b/java/examples/datasets/H5Ex_D_Shuffle.java
@@ -30,45 +30,46 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Shuffle {
- private static String FILENAME = "H5Ex_D_Shuffle.h5";
+ private static String FILENAME = "H5Ex_D_Shuffle.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 32;
- private static final int DIM_Y = 64;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 8;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
+ private static final int DIM_X = 32;
+ private static final int DIM_Y = 64;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 8;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
// Values for the status of space allocation
enum H5Z_filter {
- H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR), H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE), H5Z_FILTER_DEFLATE(
- HDF5Constants.H5Z_FILTER_DEFLATE), H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE), H5Z_FILTER_FLETCHER32(
- HDF5Constants.H5Z_FILTER_FLETCHER32), H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP), H5Z_FILTER_NBIT(
- HDF5Constants.H5Z_FILTER_NBIT), H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET), H5Z_FILTER_RESERVED(
- HDF5Constants.H5Z_FILTER_RESERVED), H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
+ H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR),
+ H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE),
+ H5Z_FILTER_DEFLATE(HDF5Constants.H5Z_FILTER_DEFLATE),
+ H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE),
+ H5Z_FILTER_FLETCHER32(HDF5Constants.H5Z_FILTER_FLETCHER32),
+ H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP),
+ H5Z_FILTER_NBIT(HDF5Constants.H5Z_FILTER_NBIT),
+ H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET),
+ H5Z_FILTER_RESERVED(HDF5Constants.H5Z_FILTER_RESERVED),
+ H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
private static final Map<Integer, H5Z_filter> lookup = new HashMap<Integer, H5Z_filter>();
- static {
+ static
+ {
for (H5Z_filter s : EnumSet.allOf(H5Z_filter.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5Z_filter(int layout_type) {
- this.code = layout_type;
- }
+ H5Z_filter(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5Z_filter get(int code) {
- return lookup.get(code);
- }
+ public static H5Z_filter get(int code) { return lookup.get(code); }
}
- private static boolean checkGzipFilter() {
+ private static boolean checkGzipFilter()
+ {
try {
int available = H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_DEFLATE);
if (available == 0) {
@@ -82,8 +83,8 @@ public class H5Ex_D_Shuffle {
try {
int filter_info = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_DEFLATE);
- if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0)
- || ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
+ if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0) ||
+ ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
System.out.println("gzip filter not available for encoding and decoding.");
return false;
}
@@ -94,7 +95,8 @@ public class H5Ex_D_Shuffle {
return true;
}
- private static boolean checkShuffleFilter() {
+ private static boolean checkShuffleFilter()
+ {
try {
int available = H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_SHUFFLE);
if (available == 0) {
@@ -108,8 +110,8 @@ public class H5Ex_D_Shuffle {
try {
int filter_info = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_SHUFFLE);
- if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0)
- || ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
+ if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0) ||
+ ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
System.out.println("Shuffle filter not available for encoding and decoding.");
return false;
}
@@ -120,13 +122,14 @@ public class H5Ex_D_Shuffle {
return true;
}
- private static void writeShuffle() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void writeShuffle()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize data.
@@ -137,7 +140,7 @@ public class H5Ex_D_Shuffle {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -176,7 +179,7 @@ public class H5Ex_D_Shuffle {
try {
if ((file_id >= 0) && (filespace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, filespace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -185,8 +188,8 @@ public class H5Ex_D_Shuffle {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -227,10 +230,11 @@ public class H5Ex_D_Shuffle {
}
}
- private static void readShuffle() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readShuffle()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
@@ -266,14 +270,14 @@ public class H5Ex_D_Shuffle {
int nfilters = H5.H5Pget_nfilters(dcpl_id);
for (int indx = 0; indx < nfilters; indx++) {
// Java lib requires a valid filter_name object and cd_values
- int[] flags = { 0 };
- long[] cd_nelmts = { 1 };
- int[] cd_values = { 0 };
- String[] filter_name = { "" };
- int[] filter_config = { 0 };
- int filter_type = -1;
- filter_type = H5.H5Pget_filter(dcpl_id, indx, flags, cd_nelmts, cd_values, 120, filter_name,
- filter_config);
+ int[] flags = {0};
+ long[] cd_nelmts = {1};
+ int[] cd_values = {0};
+ String[] filter_name = {""};
+ int[] filter_config = {0};
+ int filter_type = -1;
+ filter_type = H5.H5Pget_filter(dcpl_id, indx, flags, cd_nelmts, cd_values, 120,
+ filter_name, filter_config);
System.out.print("Filter " + indx + ": Type is: ");
switch (H5Z_filter.get(filter_type)) {
case H5Z_FILTER_DEFLATE:
@@ -308,8 +312,8 @@ public class H5Ex_D_Shuffle {
// Read the data using the default properties.
try {
if (dataset_id >= 0) {
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
}
catch (Exception e) {
@@ -354,7 +358,8 @@ public class H5Ex_D_Shuffle {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
// Check if gzip compression is available and can be used for both
// compression and decompression. Normally we do not perform error
// checking in these examples for the sake of clarity, but in this
@@ -366,5 +371,4 @@ public class H5Ex_D_Shuffle {
H5Ex_D_Shuffle.readShuffle();
}
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_Sofloat.java b/java/examples/datasets/H5Ex_D_Sofloat.java
index 8edde09..a5f5cd8 100644
--- a/java/examples/datasets/H5Ex_D_Sofloat.java
+++ b/java/examples/datasets/H5Ex_D_Sofloat.java
@@ -23,9 +23,9 @@ package examples.datasets;
import java.text.DecimalFormat;
import java.text.DecimalFormatSymbols;
-import java.util.Locale;
import java.util.EnumSet;
import java.util.HashMap;
+import java.util.Locale;
import java.util.Map;
import hdf.hdf5lib.H5;
@@ -33,45 +33,46 @@ import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Sofloat {
- private static String FILENAME = "H5Ex_D_Sofloat.h5";
+ private static String FILENAME = "H5Ex_D_Sofloat.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 32;
- private static final int DIM_Y = 64;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 8;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
+ private static final int DIM_X = 32;
+ private static final int DIM_Y = 64;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 8;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
// Values for the status of space allocation
enum H5Z_filter {
- H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR), H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE), H5Z_FILTER_DEFLATE(
- HDF5Constants.H5Z_FILTER_DEFLATE), H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE), H5Z_FILTER_FLETCHER32(
- HDF5Constants.H5Z_FILTER_FLETCHER32), H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP), H5Z_FILTER_NBIT(
- HDF5Constants.H5Z_FILTER_NBIT), H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET), H5Z_FILTER_RESERVED(
- HDF5Constants.H5Z_FILTER_RESERVED), H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
+ H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR),
+ H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE),
+ H5Z_FILTER_DEFLATE(HDF5Constants.H5Z_FILTER_DEFLATE),
+ H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE),
+ H5Z_FILTER_FLETCHER32(HDF5Constants.H5Z_FILTER_FLETCHER32),
+ H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP),
+ H5Z_FILTER_NBIT(HDF5Constants.H5Z_FILTER_NBIT),
+ H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET),
+ H5Z_FILTER_RESERVED(HDF5Constants.H5Z_FILTER_RESERVED),
+ H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
private static final Map<Integer, H5Z_filter> lookup = new HashMap<Integer, H5Z_filter>();
- static {
+ static
+ {
for (H5Z_filter s : EnumSet.allOf(H5Z_filter.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5Z_filter(int layout_type) {
- this.code = layout_type;
- }
+ H5Z_filter(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5Z_filter get(int code) {
- return lookup.get(code);
- }
+ public static H5Z_filter get(int code) { return lookup.get(code); }
}
- private static boolean checkScaleoffsetFilter() {
+ private static boolean checkScaleoffsetFilter()
+ {
try {
int available = H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_SCALEOFFSET);
if (available == 0) {
@@ -85,8 +86,8 @@ public class H5Ex_D_Sofloat {
try {
int filter_info = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_SCALEOFFSET);
- if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0)
- || ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
+ if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0) ||
+ ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
System.out.println("Scale-Offset filter not available for encoding and decoding.");
return false;
}
@@ -97,20 +98,21 @@ public class H5Ex_D_Sofloat {
return true;
}
- private static void writeData() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
+ private static void writeData()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long filespace_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
double[][] dset_data = new double[DIM_X][DIM_Y];
// Initialize data.
for (int indx = 0; indx < DIM_X; indx++)
for (int jndx = 0; jndx < DIM_Y; jndx++) {
- double x = indx;
- double y = jndx;
+ double x = indx;
+ double y = jndx;
dset_data[indx][jndx] = (x + 1) / (y + 0.3) + y;
}
@@ -133,7 +135,7 @@ public class H5Ex_D_Sofloat {
// Create a new file using the default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -164,7 +166,7 @@ public class H5Ex_D_Sofloat {
try {
if ((file_id >= 0) && (filespace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_IEEE_F64LE, filespace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -173,8 +175,8 @@ public class H5Ex_D_Sofloat {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -215,10 +217,11 @@ public class H5Ex_D_Sofloat {
}
}
- private static void readData() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readData()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
double[][] dset_data = new double[DIM_X][DIM_Y];
// Open file using the default properties.
@@ -251,15 +254,15 @@ public class H5Ex_D_Sofloat {
try {
if (dcpl_id >= 0) {
// Java lib requires a valid filter_name object and cd_values
- int[] flags = { 0 };
- long[] cd_nelmts = { 1 };
- int[] cd_values = { 0 };
- String[] filter_name = { "" };
- int[] filter_config = { 0 };
- int filter_type = -1;
-
- filter_type = H5
- .H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name, filter_config);
+ int[] flags = {0};
+ long[] cd_nelmts = {1};
+ int[] cd_values = {0};
+ String[] filter_name = {""};
+ int[] filter_config = {0};
+ int filter_type = -1;
+
+ filter_type = H5.H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name,
+ filter_config);
System.out.print("Filter type is: ");
switch (H5Z_filter.get(filter_type)) {
case H5Z_FILTER_DEFLATE:
@@ -293,8 +296,8 @@ public class H5Ex_D_Sofloat {
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -343,7 +346,8 @@ public class H5Ex_D_Sofloat {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
// Check if Scale-Offset compression is available and can be used
// for both compression and decompression. Normally we do not
diff --git a/java/examples/datasets/H5Ex_D_Soint.java b/java/examples/datasets/H5Ex_D_Soint.java
index dd7664f..3eb8e37 100644
--- a/java/examples/datasets/H5Ex_D_Soint.java
+++ b/java/examples/datasets/H5Ex_D_Soint.java
@@ -30,45 +30,46 @@ import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Soint {
- private static String FILENAME = "H5Ex_D_Soint.h5";
+ private static String FILENAME = "H5Ex_D_Soint.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 32;
- private static final int DIM_Y = 64;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 8;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
+ private static final int DIM_X = 32;
+ private static final int DIM_Y = 64;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 8;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
// Values for the status of space allocation
enum H5Z_filter {
- H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR), H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE), H5Z_FILTER_DEFLATE(
- HDF5Constants.H5Z_FILTER_DEFLATE), H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE), H5Z_FILTER_FLETCHER32(
- HDF5Constants.H5Z_FILTER_FLETCHER32), H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP), H5Z_FILTER_NBIT(
- HDF5Constants.H5Z_FILTER_NBIT), H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET), H5Z_FILTER_RESERVED(
- HDF5Constants.H5Z_FILTER_RESERVED), H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
+ H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR),
+ H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE),
+ H5Z_FILTER_DEFLATE(HDF5Constants.H5Z_FILTER_DEFLATE),
+ H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE),
+ H5Z_FILTER_FLETCHER32(HDF5Constants.H5Z_FILTER_FLETCHER32),
+ H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP),
+ H5Z_FILTER_NBIT(HDF5Constants.H5Z_FILTER_NBIT),
+ H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET),
+ H5Z_FILTER_RESERVED(HDF5Constants.H5Z_FILTER_RESERVED),
+ H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
private static final Map<Integer, H5Z_filter> lookup = new HashMap<Integer, H5Z_filter>();
- static {
+ static
+ {
for (H5Z_filter s : EnumSet.allOf(H5Z_filter.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5Z_filter(int layout_type) {
- this.code = layout_type;
- }
+ H5Z_filter(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5Z_filter get(int code) {
- return lookup.get(code);
- }
+ public static H5Z_filter get(int code) { return lookup.get(code); }
}
- private static boolean checkScaleoffsetFilter() {
+ private static boolean checkScaleoffsetFilter()
+ {
try {
int available = H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_SCALEOFFSET);
if (available == 0) {
@@ -82,8 +83,8 @@ public class H5Ex_D_Soint {
try {
int filter_info = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_SCALEOFFSET);
- if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0)
- || ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
+ if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0) ||
+ ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
System.out.println("Scale-Offset filter not available for encoding and decoding.");
return false;
}
@@ -94,13 +95,14 @@ public class H5Ex_D_Soint {
return true;
}
- private static void writeData() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void writeData()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize data.
@@ -111,7 +113,7 @@ public class H5Ex_D_Soint {
// Create a new file using the default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -130,7 +132,8 @@ public class H5Ex_D_Soint {
try {
dcpl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE);
if (dcpl_id >= 0) {
- H5.H5Pset_scaleoffset(dcpl_id, HDF5Constants.H5Z_SO_INT, HDF5Constants.H5Z_SO_INT_MINBITS_DEFAULT);
+ H5.H5Pset_scaleoffset(dcpl_id, HDF5Constants.H5Z_SO_INT,
+ HDF5Constants.H5Z_SO_INT_MINBITS_DEFAULT);
H5.H5Pset_chunk(dcpl_id, NDIMS, chunk_dims);
}
}
@@ -142,7 +145,7 @@ public class H5Ex_D_Soint {
try {
if ((file_id >= 0) && (filespace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, filespace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -151,8 +154,8 @@ public class H5Ex_D_Soint {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -193,10 +196,11 @@ public class H5Ex_D_Soint {
}
}
- private static void readData() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readData()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open file using the default properties.
@@ -229,15 +233,15 @@ public class H5Ex_D_Soint {
try {
if (dcpl_id >= 0) {
// Java lib requires a valid filter_name object and cd_values
- int[] flags = { 0 };
- long[] cd_nelmts = { 1 };
- int[] cd_values = { 0 };
- String[] filter_name = { "" };
- int[] filter_config = { 0 };
- int filter_type = -1;
-
- filter_type = H5
- .H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name, filter_config);
+ int[] flags = {0};
+ long[] cd_nelmts = {1};
+ int[] cd_values = {0};
+ String[] filter_name = {""};
+ int[] filter_config = {0};
+ int filter_type = -1;
+
+ filter_type = H5.H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name,
+ filter_config);
System.out.print("Filter type is: ");
switch (H5Z_filter.get(filter_type)) {
case H5Z_FILTER_DEFLATE:
@@ -271,8 +275,8 @@ public class H5Ex_D_Soint {
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -316,7 +320,8 @@ public class H5Ex_D_Soint {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
// Check if Scale-Offset compression is available and can be used
// for both compression and decompression. Normally we do not
@@ -328,5 +333,4 @@ public class H5Ex_D_Soint {
H5Ex_D_Soint.readData();
}
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_Szip.java b/java/examples/datasets/H5Ex_D_Szip.java
index 3fdc712..0426a87 100644
--- a/java/examples/datasets/H5Ex_D_Szip.java
+++ b/java/examples/datasets/H5Ex_D_Szip.java
@@ -29,45 +29,46 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Szip {
- private static String FILENAME = "H5Ex_D_Szip.h5";
+ private static String FILENAME = "H5Ex_D_Szip.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 32;
- private static final int DIM_Y = 64;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 8;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
+ private static final int DIM_X = 32;
+ private static final int DIM_Y = 64;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 8;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
// Values for the status of space allocation
enum H5Z_filter {
- H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR), H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE), H5Z_FILTER_DEFLATE(
- HDF5Constants.H5Z_FILTER_DEFLATE), H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE), H5Z_FILTER_FLETCHER32(
- HDF5Constants.H5Z_FILTER_FLETCHER32), H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP), H5Z_FILTER_NBIT(
- HDF5Constants.H5Z_FILTER_NBIT), H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET), H5Z_FILTER_RESERVED(
- HDF5Constants.H5Z_FILTER_RESERVED), H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
+ H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR),
+ H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE),
+ H5Z_FILTER_DEFLATE(HDF5Constants.H5Z_FILTER_DEFLATE),
+ H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE),
+ H5Z_FILTER_FLETCHER32(HDF5Constants.H5Z_FILTER_FLETCHER32),
+ H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP),
+ H5Z_FILTER_NBIT(HDF5Constants.H5Z_FILTER_NBIT),
+ H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET),
+ H5Z_FILTER_RESERVED(HDF5Constants.H5Z_FILTER_RESERVED),
+ H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
private static final Map<Integer, H5Z_filter> lookup = new HashMap<Integer, H5Z_filter>();
- static {
+ static
+ {
for (H5Z_filter s : EnumSet.allOf(H5Z_filter.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5Z_filter(int layout_type) {
- this.code = layout_type;
- }
+ H5Z_filter(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5Z_filter get(int code) {
- return lookup.get(code);
- }
+ public static H5Z_filter get(int code) { return lookup.get(code); }
}
- private static boolean checkSzipFilter() {
+ private static boolean checkSzipFilter()
+ {
try {
int available = H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_SZIP);
if (available == 0) {
@@ -81,8 +82,8 @@ public class H5Ex_D_Szip {
try {
int filter_info = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_SZIP);
- if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0)
- || ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
+ if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0) ||
+ ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
System.out.println("szip filter not available for encoding and decoding.");
return false;
}
@@ -93,13 +94,14 @@ public class H5Ex_D_Szip {
return true;
}
- private static void writeSzip() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void writeSzip()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize data.
@@ -110,7 +112,7 @@ public class H5Ex_D_Szip {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -143,7 +145,7 @@ public class H5Ex_D_Szip {
try {
if ((file_id >= 0) && (filespace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, filespace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -152,8 +154,8 @@ public class H5Ex_D_Szip {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -194,10 +196,11 @@ public class H5Ex_D_Szip {
}
}
- private static void readSzip() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readSzip()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
@@ -231,15 +234,15 @@ public class H5Ex_D_Szip {
try {
if (dcpl_id >= 0) {
// Java lib requires a valid filter_name object and cd_values
- int[] flags = { 0 };
- long[] cd_nelmts = { 1 };
- int[] cd_values = { 0 };
- String[] filter_name = { "" };
- int[] filter_config = { 0 };
- int filter_type = -1;
-
- filter_type = H5
- .H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name, filter_config);
+ int[] flags = {0};
+ long[] cd_nelmts = {1};
+ int[] cd_values = {0};
+ String[] filter_name = {""};
+ int[] filter_config = {0};
+ int filter_type = -1;
+
+ filter_type = H5.H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name,
+ filter_config);
System.out.print("Filter type is: ");
switch (H5Z_filter.get(filter_type)) {
case H5Z_FILTER_DEFLATE:
@@ -273,8 +276,8 @@ public class H5Ex_D_Szip {
// Read the data using the default properties.
try {
if (dataset_id >= 0) {
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
}
catch (Exception e) {
@@ -319,7 +322,8 @@ public class H5Ex_D_Szip {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
// Check if gzip compression is available and can be used for both
// compression and decompression. Normally we do not perform error
// checking in these examples for the sake of clarity, but in this
@@ -330,5 +334,4 @@ public class H5Ex_D_Szip {
H5Ex_D_Szip.readSzip();
}
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_Transform.java b/java/examples/datasets/H5Ex_D_Transform.java
index 069e80b..16ab423 100644
--- a/java/examples/datasets/H5Ex_D_Transform.java
+++ b/java/examples/datasets/H5Ex_D_Transform.java
@@ -27,20 +27,21 @@ import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_Transform {
- private static String FILE = "H5Ex_D_Transform.h5";
- private static String DATASET = "DS1";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 7;
- private static String TRANSFORM = "x+1";
+ private static String FILE = "H5Ex_D_Transform.h5";
+ private static String DATASET = "DS1";
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 7;
+ private static String TRANSFORM = "x+1";
private static String RTRANSFORM = "x-1";
- private static void writeData() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void writeData()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dxpl_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dxpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
+ long[] dims = {DIM_X, DIM_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize data.
@@ -60,7 +61,7 @@ public class H5Ex_D_Transform {
// Create a new file using the default properties.
try {
file_id = H5.H5Fcreate(FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -90,7 +91,8 @@ public class H5Ex_D_Transform {
try {
if ((file_id >= 0) && (filespace_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASET, HDF5Constants.H5T_NATIVE_INT, filespace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -99,8 +101,8 @@ public class H5Ex_D_Transform {
// Write the data to the dataset using the dataset transfer property list.
try {
if ((dataset_id >= 0) && (dxpl_id >= 0))
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- dxpl_id, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, dxpl_id, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -141,11 +143,12 @@ public class H5Ex_D_Transform {
}
}
- private static void readData() {
+ private static void readData()
+ {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dxpl_id = HDF5Constants.H5I_INVALID_HID;
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dxpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file using the default properties.
@@ -168,8 +171,8 @@ public class H5Ex_D_Transform {
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -197,8 +200,8 @@ public class H5Ex_D_Transform {
// Read the data using the dataset transfer property list.
try {
if ((dataset_id >= 0) && (dxpl_id >= 0))
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- dxpl_id, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, dxpl_id, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -206,8 +209,8 @@ public class H5Ex_D_Transform {
// Output the data to the screen.
- System.out.println("Data as written with transform '" + TRANSFORM + "' and read with transform '"
- + RTRANSFORM + "'");
+ System.out.println("Data as written with transform '" + TRANSFORM + "' and read with transform '" +
+ RTRANSFORM + "'");
for (int i = 0; i < DIM_X; i++) {
System.out.print(" [");
for (int j = 0; j < DIM_Y; j++)
@@ -239,9 +242,9 @@ public class H5Ex_D_Transform {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_D_Transform.writeData();
H5Ex_D_Transform.readData();
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_UnlimitedAdd.java b/java/examples/datasets/H5Ex_D_UnlimitedAdd.java
index c82b2d6..4154cf3 100644
--- a/java/examples/datasets/H5Ex_D_UnlimitedAdd.java
+++ b/java/examples/datasets/H5Ex_D_UnlimitedAdd.java
@@ -26,25 +26,26 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_UnlimitedAdd {
- private static String FILENAME = "H5Ex_D_UnlimitedAdd.h5";
+ private static String FILENAME = "H5Ex_D_UnlimitedAdd.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 7;
- private static final int EDIM_X = 6;
- private static final int EDIM_Y = 10;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 4;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
-
- private static void writeUnlimited() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 7;
+ private static final int EDIM_X = 6;
+ private static final int EDIM_Y = 10;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 4;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
+
+ private static void writeUnlimited()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
- long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
+ long[] maxdims = {HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize the dataset.
@@ -55,7 +56,7 @@ public class H5Ex_D_UnlimitedAdd {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -90,7 +91,7 @@ public class H5Ex_D_UnlimitedAdd {
try {
if ((file_id >= 0) && (dataspace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -99,8 +100,8 @@ public class H5Ex_D_UnlimitedAdd {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -141,14 +142,15 @@ public class H5Ex_D_UnlimitedAdd {
}
}
- private static void extendUnlimited() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void extendUnlimited()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] extdims = { EDIM_X, EDIM_Y };
- long[] start = { 0, 0 };
- long[] count = new long[2];
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] extdims = {EDIM_X, EDIM_Y};
+ long[] start = {0, 0};
+ long[] count = new long[2];
int[][] dset_data;
int[][] extend_dset_data = new int[EDIM_X][EDIM_Y];
@@ -189,13 +191,13 @@ public class H5Ex_D_UnlimitedAdd {
}
// Allocate array of pointers to rows.
- dset_data = new int[(int) dims[0]][(int) dims[1]];
+ dset_data = new int[(int)dims[0]][(int)dims[1]];
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -257,7 +259,7 @@ public class H5Ex_D_UnlimitedAdd {
// Write the data to the selected portion of the dataset.
if (dataset_id >= 0)
H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, dataspace_id,
- HDF5Constants.H5P_DEFAULT, extend_dset_data);
+ HDF5Constants.H5P_DEFAULT, extend_dset_data);
}
}
catch (Exception e) {
@@ -291,11 +293,12 @@ public class H5Ex_D_UnlimitedAdd {
}
}
- private static void readUnlimited() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readUnlimited()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
int[][] dset_data;
// Open an existing file.
@@ -332,13 +335,13 @@ public class H5Ex_D_UnlimitedAdd {
e.printStackTrace();
}
// Allocate array of pointers to rows.
- dset_data = new int[(int) dims[0]][(int) dims[1]];
+ dset_data = new int[(int)dims[0]][(int)dims[1]];
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -381,10 +384,10 @@ public class H5Ex_D_UnlimitedAdd {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_D_UnlimitedAdd.writeUnlimited();
H5Ex_D_UnlimitedAdd.extendUnlimited();
H5Ex_D_UnlimitedAdd.readUnlimited();
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_UnlimitedGzip.java b/java/examples/datasets/H5Ex_D_UnlimitedGzip.java
index 675b1ba..e084641 100644
--- a/java/examples/datasets/H5Ex_D_UnlimitedGzip.java
+++ b/java/examples/datasets/H5Ex_D_UnlimitedGzip.java
@@ -31,47 +31,48 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_UnlimitedGzip {
- private static String FILENAME = "H5Ex_D_UnlimitedGzip.h5";
+ private static String FILENAME = "H5Ex_D_UnlimitedGzip.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 7;
- private static final int EDIM_X = 6;
- private static final int EDIM_Y = 10;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 4;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 7;
+ private static final int EDIM_X = 6;
+ private static final int EDIM_Y = 10;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 4;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
// Values for the status of space allocation
enum H5Z_filter {
- H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR), H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE), H5Z_FILTER_DEFLATE(
- HDF5Constants.H5Z_FILTER_DEFLATE), H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE), H5Z_FILTER_FLETCHER32(
- HDF5Constants.H5Z_FILTER_FLETCHER32), H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP), H5Z_FILTER_NBIT(
- HDF5Constants.H5Z_FILTER_NBIT), H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET), H5Z_FILTER_RESERVED(
- HDF5Constants.H5Z_FILTER_RESERVED), H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
+ H5Z_FILTER_ERROR(HDF5Constants.H5Z_FILTER_ERROR),
+ H5Z_FILTER_NONE(HDF5Constants.H5Z_FILTER_NONE),
+ H5Z_FILTER_DEFLATE(HDF5Constants.H5Z_FILTER_DEFLATE),
+ H5Z_FILTER_SHUFFLE(HDF5Constants.H5Z_FILTER_SHUFFLE),
+ H5Z_FILTER_FLETCHER32(HDF5Constants.H5Z_FILTER_FLETCHER32),
+ H5Z_FILTER_SZIP(HDF5Constants.H5Z_FILTER_SZIP),
+ H5Z_FILTER_NBIT(HDF5Constants.H5Z_FILTER_NBIT),
+ H5Z_FILTER_SCALEOFFSET(HDF5Constants.H5Z_FILTER_SCALEOFFSET),
+ H5Z_FILTER_RESERVED(HDF5Constants.H5Z_FILTER_RESERVED),
+ H5Z_FILTER_MAX(HDF5Constants.H5Z_FILTER_MAX);
private static final Map<Integer, H5Z_filter> lookup = new HashMap<Integer, H5Z_filter>();
- static {
+ static
+ {
for (H5Z_filter s : EnumSet.allOf(H5Z_filter.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5Z_filter(int layout_type) {
- this.code = layout_type;
- }
+ H5Z_filter(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5Z_filter get(int code) {
- return lookup.get(code);
- }
+ public static H5Z_filter get(int code) { return lookup.get(code); }
}
- private static boolean checkGzipFilter() {
+ private static boolean checkGzipFilter()
+ {
try {
int available = H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_DEFLATE);
if (available == 0) {
@@ -85,8 +86,8 @@ public class H5Ex_D_UnlimitedGzip {
try {
int filter_info = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_DEFLATE);
- if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0)
- || ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
+ if (((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) == 0) ||
+ ((filter_info & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) == 0)) {
System.out.println("gzip filter not available for encoding and decoding.");
return false;
}
@@ -97,14 +98,15 @@ public class H5Ex_D_UnlimitedGzip {
return true;
}
- private static void writeUnlimited() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ private static void writeUnlimited()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
- long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
+ long[] maxdims = {HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize the dataset.
@@ -115,7 +117,7 @@ public class H5Ex_D_UnlimitedGzip {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -147,7 +149,7 @@ public class H5Ex_D_UnlimitedGzip {
try {
if ((file_id >= 0) && (dataspace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -156,8 +158,8 @@ public class H5Ex_D_UnlimitedGzip {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -198,14 +200,15 @@ public class H5Ex_D_UnlimitedGzip {
}
}
- private static void extendUnlimited() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void extendUnlimited()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] extdims = { EDIM_X, EDIM_Y };
- long[] start = { 0, 0 };
- long[] count = new long[2];
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] extdims = {EDIM_X, EDIM_Y};
+ long[] start = {0, 0};
+ long[] count = new long[2];
int[][] dset_data;
int[][] extend_dset_data = new int[EDIM_X][EDIM_Y];
@@ -246,13 +249,13 @@ public class H5Ex_D_UnlimitedGzip {
}
// Allocate array of pointers to rows.
- dset_data = new int[(int) dims[0]][(int) dims[1]];
+ dset_data = new int[(int)dims[0]][(int)dims[1]];
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -314,7 +317,7 @@ public class H5Ex_D_UnlimitedGzip {
// Write the data to the selected portion of the dataset.
if (dataset_id >= 0)
H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, dataspace_id,
- HDF5Constants.H5P_DEFAULT, extend_dset_data);
+ HDF5Constants.H5P_DEFAULT, extend_dset_data);
}
}
catch (Exception e) {
@@ -348,12 +351,13 @@ public class H5Ex_D_UnlimitedGzip {
}
}
- private static void readUnlimited() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readUnlimited()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
int[][] dset_data;
// Open an existing file.
@@ -387,14 +391,14 @@ public class H5Ex_D_UnlimitedGzip {
try {
if (dcpl_id >= 0) {
// Java lib requires a valid filter_name object and cd_values
- int[] flags = { 0 };
- long[] cd_nelmts = { 1 };
- int[] cd_values = { 0 };
- String[] filter_name = { "" };
- int[] filter_config = { 0 };
- int filter_type = -1;
- filter_type = H5
- .H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name, filter_config);
+ int[] flags = {0};
+ long[] cd_nelmts = {1};
+ int[] cd_values = {0};
+ String[] filter_name = {""};
+ int[] filter_config = {0};
+ int filter_type = -1;
+ filter_type = H5.H5Pget_filter(dcpl_id, 0, flags, cd_nelmts, cd_values, 120, filter_name,
+ filter_config);
System.out.print("Filter type is: ");
switch (H5Z_filter.get(filter_type)) {
case H5Z_FILTER_DEFLATE:
@@ -436,13 +440,13 @@ public class H5Ex_D_UnlimitedGzip {
e.printStackTrace();
}
// Allocate array of pointers to rows.
- dset_data = new int[(int) dims[0]][(int) dims[1]];
+ dset_data = new int[(int)dims[0]][(int)dims[1]];
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -485,7 +489,8 @@ public class H5Ex_D_UnlimitedGzip {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
// Check if gzip compression is available and can be used for both
// compression and decompression. Normally we do not perform error
// checking in these examples for the sake of clarity, but in this
@@ -497,5 +502,4 @@ public class H5Ex_D_UnlimitedGzip {
H5Ex_D_UnlimitedGzip.readUnlimited();
}
}
-
}
diff --git a/java/examples/datasets/H5Ex_D_UnlimitedMod.java b/java/examples/datasets/H5Ex_D_UnlimitedMod.java
index 0708898..ccabcdd 100644
--- a/java/examples/datasets/H5Ex_D_UnlimitedMod.java
+++ b/java/examples/datasets/H5Ex_D_UnlimitedMod.java
@@ -26,25 +26,26 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_D_UnlimitedMod {
- private static String FILENAME = "H5Ex_D_UnlimitedMod.h5";
+ private static String FILENAME = "H5Ex_D_UnlimitedMod.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 7;
- private static final int EDIM_X = 6;
- private static final int EDIM_Y = 10;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 4;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
-
- private static void writeUnlimited() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 7;
+ private static final int EDIM_X = 6;
+ private static final int EDIM_Y = 10;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 4;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
+
+ private static void writeUnlimited()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
- long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
+ long[] maxdims = {HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize the dataset.
@@ -55,7 +56,7 @@ public class H5Ex_D_UnlimitedMod {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -90,7 +91,7 @@ public class H5Ex_D_UnlimitedMod {
try {
if ((file_id >= 0) && (dataspace_id >= 0) && (dcpl_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -99,8 +100,8 @@ public class H5Ex_D_UnlimitedMod {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -141,12 +142,13 @@ public class H5Ex_D_UnlimitedMod {
}
}
- private static void extendUnlimited() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void extendUnlimited()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
- long[] extdims = { EDIM_X, EDIM_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
+ long[] extdims = {EDIM_X, EDIM_Y};
int[][] dset_data;
int[][] extend_dset_data = new int[EDIM_X][EDIM_Y];
@@ -187,13 +189,13 @@ public class H5Ex_D_UnlimitedMod {
}
// Allocate array of pointers to rows.
- dset_data = new int[(int) dims[0]][(int) dims[1]];
+ dset_data = new int[(int)dims[0]][(int)dims[1]];
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -244,7 +246,7 @@ public class H5Ex_D_UnlimitedMod {
try {
if ((dataspace_id >= 0) && (dataset_id >= 0))
H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, dataspace_id,
- HDF5Constants.H5P_DEFAULT, extend_dset_data);
+ HDF5Constants.H5P_DEFAULT, extend_dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -277,11 +279,12 @@ public class H5Ex_D_UnlimitedMod {
}
}
- private static void readUnlimited() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void readUnlimited()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
int[][] dset_data;
// Open an existing file.
@@ -318,13 +321,13 @@ public class H5Ex_D_UnlimitedMod {
e.printStackTrace();
}
// Allocate array of pointers to rows.
- dset_data = new int[(int) dims[0]][(int) dims[1]];
+ dset_data = new int[(int)dims[0]][(int)dims[1]];
// Read the data using the default properties.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -367,10 +370,10 @@ public class H5Ex_D_UnlimitedMod {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_D_UnlimitedMod.writeUnlimited();
H5Ex_D_UnlimitedMod.extendUnlimited();
H5Ex_D_UnlimitedMod.readUnlimited();
}
-
}
diff --git a/java/examples/datatypes/CMakeLists.txt b/java/examples/datatypes/CMakeLists.txt
index 6997b2e..4512221 100644
--- a/java/examples/datatypes/CMakeLists.txt
+++ b/java/examples/datatypes/CMakeLists.txt
@@ -47,6 +47,13 @@ foreach (example ${HDF_JAVA_EXAMPLES})
# install_jar (${example} ${HJAVA_INSTALL_DATA_DIR}/examples examples)
get_target_property (${example}_CLASSPATH ${example} CLASSDIR)
add_dependencies (${example} ${HDF5_JAVA_HDF5_LIB_TARGET})
+
+ #-----------------------------------------------------------------------------
+ # Add Target to clang-format
+ #-----------------------------------------------------------------------------
+ if (HDF5_ENABLE_FORMATTERS)
+ clang_format (HDF5_JAVA_${example}_SRC_FORMAT ${example}.java)
+ endif ()
endforeach ()
set (CMAKE_JAVA_INCLUDE_PATH "${HDF5_JAVA_JARS};${HDF5_JAVA_LOGGING_JAR};${HDF5_JAVA_LOGGING_NOP_JAR}")
diff --git a/java/examples/datatypes/H5Ex_T_Array.java b/java/examples/datatypes/H5Ex_T_Array.java
index 3939b38..4e9de2a 100644
--- a/java/examples/datatypes/H5Ex_T_Array.java
+++ b/java/examples/datatypes/H5Ex_T_Array.java
@@ -24,22 +24,23 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_Array {
- private static String FILENAME = "H5Ex_T_Array.h5";
+ private static String FILENAME = "H5Ex_T_Array.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM0 = 4;
- private static final int ADIM0 = 3;
- private static final int ADIM1 = 5;
- private static final int RANK = 1;
- private static final int NDIMS = 2;
-
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- long memtype_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
- long[] adims = { ADIM0, ADIM1 };
+ private static final int DIM0 = 4;
+ private static final int ADIM0 = 3;
+ private static final int ADIM1 = 5;
+ private static final int RANK = 1;
+ private static final int NDIMS = 2;
+
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ long memtype_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
+ long[] adims = {ADIM0, ADIM1};
int[][][] dset_data = new int[DIM0][ADIM0][ADIM1];
// Initialize data. indx is the element in the dataspace, jndx and kndx the
@@ -52,7 +53,7 @@ public class H5Ex_T_Array {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -86,8 +87,9 @@ public class H5Ex_T_Array {
// Create the dataset.
try {
if ((file_id >= 0) && (dataspace_id >= 0) && (filetype_id >= 0))
- dataset_id = H5.H5Dcreate(file_id, DATASETNAME, filetype_id, dataspace_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id =
+ H5.H5Dcreate(file_id, DATASETNAME, filetype_id, dataspace_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -97,7 +99,7 @@ public class H5Ex_T_Array {
try {
if ((dataset_id >= 0) && (memtype_id >= 0))
H5.H5Dwrite(dataset_id, memtype_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -147,16 +149,16 @@ public class H5Ex_T_Array {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
- long memtype_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
- long[] adims = { ADIM0, ADIM1 };
+ long memtype_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
+ long[] adims = {ADIM0, ADIM1};
int[][][] dset_data;
// Open an existing file.
@@ -196,7 +198,7 @@ public class H5Ex_T_Array {
// Allocate array of pointers to two-dimensional arrays (the
// elements of the dataset.
- dset_data = new int[(int) dims[0]][(int) (adims[0])][(int) (adims[1])];
+ dset_data = new int[(int)dims[0]][(int)(adims[0])][(int)(adims[1])];
// Create array datatypes for memory.
try {
@@ -210,7 +212,7 @@ public class H5Ex_T_Array {
try {
if ((dataset_id >= 0) && (memtype_id >= 0))
H5.H5Dread(dataset_id, memtype_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -264,10 +266,10 @@ public class H5Ex_T_Array {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_Array.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -275,5 +277,4 @@ public class H5Ex_T_Array {
// data using malloc().
H5Ex_T_Array.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_ArrayAttribute.java b/java/examples/datatypes/H5Ex_T_ArrayAttribute.java
index c4c4bc4..45b44c1 100644
--- a/java/examples/datatypes/H5Ex_T_ArrayAttribute.java
+++ b/java/examples/datatypes/H5Ex_T_ArrayAttribute.java
@@ -24,24 +24,25 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_ArrayAttribute {
- private static String FILENAME = "H5Ex_T_ArrayAttribute.h5";
- private static String DATASETNAME = "DS1";
+ private static String FILENAME = "H5Ex_T_ArrayAttribute.h5";
+ private static String DATASETNAME = "DS1";
private static String ATTRIBUTENAME = "A1";
- private static final int DIM0 = 4;
- private static final int ADIM0 = 3;
- private static final int ADIM1 = 5;
- private static final int RANK = 1;
- private static final int NDIMS = 2;
-
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- long memtype_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
- long[] adims = { ADIM0, ADIM1 };
+ private static final int DIM0 = 4;
+ private static final int ADIM0 = 3;
+ private static final int ADIM1 = 5;
+ private static final int RANK = 1;
+ private static final int NDIMS = 2;
+
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ long memtype_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long attribute_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
+ long[] adims = {ADIM0, ADIM1};
int[][][] dset_data = new int[DIM0][ADIM0][ADIM1];
// Initialize data. indx is the element in the dataspace, jndx and kndx the
@@ -54,7 +55,7 @@ public class H5Ex_T_ArrayAttribute {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -81,7 +82,8 @@ public class H5Ex_T_ArrayAttribute {
dataspace_id = H5.H5Screate(HDF5Constants.H5S_SCALAR);
if (dataspace_id >= 0) {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
@@ -103,7 +105,7 @@ public class H5Ex_T_ArrayAttribute {
try {
if ((dataset_id >= 0) && (dataspace_id >= 0) && (filetype_id >= 0))
attribute_id = H5.H5Acreate(dataset_id, ATTRIBUTENAME, filetype_id, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -170,17 +172,17 @@ public class H5Ex_T_ArrayAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- long memtype_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ long memtype_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
- long[] adims = { ADIM0, ADIM1 };
+ long[] dims = {DIM0};
+ long[] adims = {ADIM0, ADIM1};
int[][][] dset_data;
// Open an existing file.
@@ -203,7 +205,7 @@ public class H5Ex_T_ArrayAttribute {
try {
if (dataset_id >= 0)
attribute_id = H5.H5Aopen_by_name(dataset_id, ".", ATTRIBUTENAME, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -229,7 +231,7 @@ public class H5Ex_T_ArrayAttribute {
// Allocate array of pointers to two-dimensional arrays (the
// elements of the dataset.
- dset_data = new int[(int) dims[0]][(int) (adims[0])][(int) (adims[1])];
+ dset_data = new int[(int)dims[0]][(int)(adims[0])][(int)(adims[1])];
// Create array datatypes for memory.
try {
@@ -304,10 +306,10 @@ public class H5Ex_T_ArrayAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_ArrayAttribute.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -315,5 +317,4 @@ public class H5Ex_T_ArrayAttribute {
// data using malloc().
H5Ex_T_ArrayAttribute.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_Bit.java b/java/examples/datatypes/H5Ex_T_Bit.java
index 45d4e8a..6d1a253 100644
--- a/java/examples/datatypes/H5Ex_T_Bit.java
+++ b/java/examples/datatypes/H5Ex_T_Bit.java
@@ -24,17 +24,18 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_Bit {
- private static String FILENAME = "H5Ex_T_Bit.h5";
+ private static String FILENAME = "H5Ex_T_Bit.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM0 = 4;
- private static final int DIM1 = 7;
- private static final int RANK = 2;
+ private static final int DIM0 = 4;
+ private static final int DIM1 = 7;
+ private static final int RANK = 2;
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0, DIM1 };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0, DIM1};
int[][] dset_data = new int[DIM0][DIM1];
// Initialize data.
@@ -42,15 +43,15 @@ public class H5Ex_T_Bit {
for (int jndx = 0; jndx < DIM1; jndx++) {
dset_data[indx][jndx] = 0;
dset_data[indx][jndx] |= (indx * jndx - jndx) & 0x03; /* Field "A" */
- dset_data[indx][jndx] |= (indx & 0x03) << 2; /* Field "B" */
- dset_data[indx][jndx] |= (jndx & 0x03) << 4; /* Field "C" */
+ dset_data[indx][jndx] |= (indx & 0x03) << 2; /* Field "B" */
+ dset_data[indx][jndx] |= (jndx & 0x03) << 4; /* Field "C" */
dset_data[indx][jndx] |= ((indx + jndx) & 0x03) << 6; /* Field "D" */
}
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -69,7 +70,8 @@ public class H5Ex_T_Bit {
try {
if ((file_id >= 0) && (dataspace_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_B8BE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -78,8 +80,8 @@ public class H5Ex_T_Bit {
// Write the bitfield data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_B8, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_B8, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -111,14 +113,14 @@ public class H5Ex_T_Bit {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0, DIM1 };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0, DIM1};
int[][] dset_data;
// Open an existing file.
@@ -157,13 +159,13 @@ public class H5Ex_T_Bit {
// Allocate array of pointers to two-dimensional arrays (the
// elements of the dataset.
- dset_data = new int[(int) dims[0]][(int) (dims[1])];
+ dset_data = new int[(int)dims[0]][(int)(dims[1])];
// Read data.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_B8, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_B8, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -209,10 +211,10 @@ public class H5Ex_T_Bit {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_Bit.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -220,5 +222,4 @@ public class H5Ex_T_Bit {
// data using malloc().
H5Ex_T_Bit.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_BitAttribute.java b/java/examples/datatypes/H5Ex_T_BitAttribute.java
index 9b33ca5..3ad643a 100644
--- a/java/examples/datatypes/H5Ex_T_BitAttribute.java
+++ b/java/examples/datatypes/H5Ex_T_BitAttribute.java
@@ -24,19 +24,20 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_BitAttribute {
- private static String FILENAME = "H5Ex_T_BitAttribute.h5";
- private static String DATASETNAME = "DS1";
+ private static String FILENAME = "H5Ex_T_BitAttribute.h5";
+ private static String DATASETNAME = "DS1";
private static String ATTRIBUTENAME = "A1";
- private static final int DIM0 = 4;
- private static final int DIM1 = 7;
- private static final int RANK = 2;
+ private static final int DIM0 = 4;
+ private static final int DIM1 = 7;
+ private static final int RANK = 2;
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0, DIM1 };
+ long[] dims = {DIM0, DIM1};
int[][] dset_data = new int[DIM0][DIM1];
// Initialize data.
@@ -44,15 +45,15 @@ public class H5Ex_T_BitAttribute {
for (int jndx = 0; jndx < DIM1; jndx++) {
dset_data[indx][jndx] = 0;
dset_data[indx][jndx] |= (indx * jndx - jndx) & 0x03; /* Field "A" */
- dset_data[indx][jndx] |= (indx & 0x03) << 2; /* Field "B" */
- dset_data[indx][jndx] |= (jndx & 0x03) << 4; /* Field "C" */
+ dset_data[indx][jndx] |= (indx & 0x03) << 2; /* Field "B" */
+ dset_data[indx][jndx] |= (jndx & 0x03) << 4; /* Field "C" */
dset_data[indx][jndx] |= ((indx + jndx) & 0x03) << 6; /* Field "D" */
}
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -63,7 +64,8 @@ public class H5Ex_T_BitAttribute {
dataspace_id = H5.H5Screate(HDF5Constants.H5S_SCALAR);
if (dataspace_id >= 0) {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
@@ -84,8 +86,9 @@ public class H5Ex_T_BitAttribute {
// Create the attribute and write the array data to it.
try {
if ((dataset_id >= 0) && (dataspace_id >= 0))
- attribute_id = H5.H5Acreate(dataset_id, ATTRIBUTENAME, HDF5Constants.H5T_STD_B8BE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attribute_id =
+ H5.H5Acreate(dataset_id, ATTRIBUTENAME, HDF5Constants.H5T_STD_B8BE, dataspace_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -134,15 +137,15 @@ public class H5Ex_T_BitAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0, DIM1 };
+ long[] dims = {DIM0, DIM1};
int[][] dset_data;
// Open an existing file.
@@ -165,7 +168,7 @@ public class H5Ex_T_BitAttribute {
try {
if (dataset_id >= 0)
attribute_id = H5.H5Aopen_by_name(dataset_id, ".", ATTRIBUTENAME, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -190,7 +193,7 @@ public class H5Ex_T_BitAttribute {
// Allocate array of pointers to two-dimensional arrays (the
// elements of the dataset.
- dset_data = new int[(int) dims[0]][(int) (dims[1])];
+ dset_data = new int[(int)dims[0]][(int)(dims[1])];
// Read data.
try {
@@ -249,10 +252,10 @@ public class H5Ex_T_BitAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_BitAttribute.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -260,5 +263,4 @@ public class H5Ex_T_BitAttribute {
// data using malloc().
H5Ex_T_BitAttribute.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_Commit.java b/java/examples/datatypes/H5Ex_T_Commit.java
index 62db5ea..44586ef 100644
--- a/java/examples/datatypes/H5Ex_T_Commit.java
+++ b/java/examples/datatypes/H5Ex_T_Commit.java
@@ -21,77 +21,74 @@
package examples.datatypes;
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-
import java.util.EnumSet;
import java.util.HashMap;
import java.util.Map;
+import hdf.hdf5lib.H5;
+import hdf.hdf5lib.HDF5Constants;
+
public class H5Ex_T_Commit {
- private static String FILENAME = "H5Ex_T_Commit.h5";
- private static String DATATYPENAME = "Sensor_Type";
- protected static final int INTEGERSIZE = 4;
- protected static final int DOUBLESIZE = 8;
+ private static String FILENAME = "H5Ex_T_Commit.h5";
+ private static String DATATYPENAME = "Sensor_Type";
+ protected static final int INTEGERSIZE = 4;
+ protected static final int DOUBLESIZE = 8;
protected final static int MAXSTRINGSIZE = 80;
// Values for the various classes of datatypes
enum H5T_class {
- H5T_NO_CLASS(HDF5Constants.H5T_NO_CLASS), // error
- H5T_INTEGER(HDF5Constants.H5T_INTEGER), // integer types
- H5T_FLOAT(HDF5Constants.H5T_FLOAT), // floating-point types
- H5T_TIME(HDF5Constants.H5T_TIME), // date and time types
- H5T_STRING(HDF5Constants.H5T_STRING), // character string types
- H5T_BITFIELD(HDF5Constants.H5T_BITFIELD), // bit field types
- H5T_OPAQUE(HDF5Constants.H5T_OPAQUE), // opaque types
- H5T_COMPOUND(HDF5Constants.H5T_COMPOUND), // compound types
+ H5T_NO_CLASS(HDF5Constants.H5T_NO_CLASS), // error
+ H5T_INTEGER(HDF5Constants.H5T_INTEGER), // integer types
+ H5T_FLOAT(HDF5Constants.H5T_FLOAT), // floating-point types
+ H5T_TIME(HDF5Constants.H5T_TIME), // date and time types
+ H5T_STRING(HDF5Constants.H5T_STRING), // character string types
+ H5T_BITFIELD(HDF5Constants.H5T_BITFIELD), // bit field types
+ H5T_OPAQUE(HDF5Constants.H5T_OPAQUE), // opaque types
+ H5T_COMPOUND(HDF5Constants.H5T_COMPOUND), // compound types
H5T_REFERENCE(HDF5Constants.H5T_REFERENCE), // reference types
- H5T_ENUM(HDF5Constants.H5T_ENUM), // enumeration types
- H5T_VLEN(HDF5Constants.H5T_VLEN), // Variable-Length types
- H5T_ARRAY(HDF5Constants.H5T_ARRAY), // Array types
- H5T_NCLASSES(11); // this must be last
+ H5T_ENUM(HDF5Constants.H5T_ENUM), // enumeration types
+ H5T_VLEN(HDF5Constants.H5T_VLEN), // Variable-Length types
+ H5T_ARRAY(HDF5Constants.H5T_ARRAY), // Array types
+ H5T_NCLASSES(11); // this must be last
private static final Map<Long, H5T_class> lookup = new HashMap<Long, H5T_class>();
- static {
+ static
+ {
for (H5T_class s : EnumSet.allOf(H5T_class.class))
lookup.put(s.getCode(), s);
}
private long code;
- H5T_class(long layout_type) {
- this.code = layout_type;
- }
+ H5T_class(long layout_type) { this.code = layout_type; }
- public long getCode() {
- return this.code;
- }
+ public long getCode() { return this.code; }
- public static H5T_class get(long typeclass_id) {
- return lookup.get(typeclass_id);
- }
+ public static H5T_class get(long typeclass_id) { return lookup.get(typeclass_id); }
}
// The supporting Sensor_Datatype class.
private static class Sensor_Datatype {
static int numberMembers = 4;
- static int[] memberDims = { 1, 1, 1, 1 };
+ static int[] memberDims = {1, 1, 1, 1};
- String[] memberNames = { "Serial number", "Location", "Temperature (F)", "Pressure (inHg)" };
- long[] memberFileTypes = { HDF5Constants.H5T_STD_I32BE, HDF5Constants.H5T_C_S1, HDF5Constants.H5T_IEEE_F64BE,
- HDF5Constants.H5T_IEEE_F64BE };
- static int[] memberStorage = { INTEGERSIZE, MAXSTRINGSIZE, DOUBLESIZE, DOUBLESIZE };
+ String[] memberNames = {"Serial number", "Location", "Temperature (F)", "Pressure (inHg)"};
+ long[] memberFileTypes = {HDF5Constants.H5T_STD_I32BE, HDF5Constants.H5T_C_S1,
+ HDF5Constants.H5T_IEEE_F64BE, HDF5Constants.H5T_IEEE_F64BE};
+ static int[] memberStorage = {INTEGERSIZE, MAXSTRINGSIZE, DOUBLESIZE, DOUBLESIZE};
// Data size is the storage size for the members not the object.
- static long getDataSize() {
+ static long getDataSize()
+ {
long data_size = 0;
for (int indx = 0; indx < numberMembers; indx++)
data_size += memberStorage[indx] * memberDims[indx];
return data_size;
}
- static int getOffset(int memberItem) {
+ static int getOffset(int memberItem)
+ {
int data_offset = 0;
for (int indx = 0; indx < memberItem; indx++)
data_offset += memberStorage[indx];
@@ -99,15 +96,16 @@ public class H5Ex_T_Commit {
}
}
- private static void CreateDataType() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long strtype_id = HDF5Constants.H5I_INVALID_HID;
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateDataType()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long strtype_id = HDF5Constants.H5I_INVALID_HID;
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
Sensor_Datatype datatypes = new Sensor_Datatype();
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -134,7 +132,8 @@ public class H5Ex_T_Commit {
long type_id = datatypes.memberFileTypes[indx];
if (type_id == HDF5Constants.H5T_C_S1)
type_id = strtype_id;
- H5.H5Tinsert(filetype_id, datatypes.memberNames[indx], Sensor_Datatype.getOffset(indx), type_id);
+ H5.H5Tinsert(filetype_id, datatypes.memberNames[indx], Sensor_Datatype.getOffset(indx),
+ type_id);
}
}
}
@@ -145,8 +144,8 @@ public class H5Ex_T_Commit {
// Commit the compound datatype to the file, creating a named datatype.
try {
if ((file_id >= 0) && (filetype_id >= 0))
- H5.H5Tcommit(file_id, DATATYPENAME, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ H5.H5Tcommit(file_id, DATATYPENAME, filetype_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -178,13 +177,13 @@ public class H5Ex_T_Commit {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataType() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataType()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long typeclass_id = HDF5Constants.H5I_INVALID_HID;
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
// Open an existing file.
try {
@@ -247,10 +246,10 @@ public class H5Ex_T_Commit {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_Commit.CreateDataType();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -258,5 +257,4 @@ public class H5Ex_T_Commit {
// data using malloc().
H5Ex_T_Commit.ReadDataType();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_Compound.java b/java/examples/datatypes/H5Ex_T_Compound.java
index 8c83ebb..a78d0e3 100644
--- a/java/examples/datatypes/H5Ex_T_Compound.java
+++ b/java/examples/datatypes/H5Ex_T_Compound.java
@@ -20,49 +20,52 @@
package examples.datatypes;
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-
import java.nio.ByteBuffer;
import java.nio.ByteOrder;
import java.nio.charset.Charset;
+import hdf.hdf5lib.H5;
+import hdf.hdf5lib.HDF5Constants;
+
public class H5Ex_T_Compound {
- private static String FILENAME = "H5Ex_T_Compound.h5";
- private static String DATASETNAME = "DS1";
- private static final int DIM0 = 4;
- private static final int RANK = 1;
- protected static final int INTEGERSIZE = 4;
- protected static final int DOUBLESIZE = 8;
+ private static String FILENAME = "H5Ex_T_Compound.h5";
+ private static String DATASETNAME = "DS1";
+ private static final int DIM0 = 4;
+ private static final int RANK = 1;
+ protected static final int INTEGERSIZE = 4;
+ protected static final int DOUBLESIZE = 8;
protected final static int MAXSTRINGSIZE = 80;
static class Sensor_Datatype {
static int numberMembers = 4;
- static int[] memberDims = { 1, 1, 1, 1 };
+ static int[] memberDims = {1, 1, 1, 1};
- static String[] memberNames = { "Serial number", "Location", "Temperature (F)", "Pressure (inHg)" };
- static long[] memberMemTypes = { HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5T_C_S1,
- HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5T_NATIVE_DOUBLE };
- static long[] memberFileTypes = { HDF5Constants.H5T_STD_I32BE, HDF5Constants.H5T_C_S1,
- HDF5Constants.H5T_IEEE_F64BE, HDF5Constants.H5T_IEEE_F64BE };
- static int[] memberStorage = { INTEGERSIZE, MAXSTRINGSIZE, DOUBLESIZE, DOUBLESIZE };
+ static String[] memberNames = {"Serial number", "Location", "Temperature (F)", "Pressure (inHg)"};
+ static long[] memberMemTypes = {HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5T_C_S1,
+ HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5T_NATIVE_DOUBLE};
+ static long[] memberFileTypes = {HDF5Constants.H5T_STD_I32BE, HDF5Constants.H5T_C_S1,
+ HDF5Constants.H5T_IEEE_F64BE, HDF5Constants.H5T_IEEE_F64BE};
+ static int[] memberStorage = {INTEGERSIZE, MAXSTRINGSIZE, DOUBLESIZE, DOUBLESIZE};
// Data size is the storage size for the members.
- static long getTotalDataSize() {
+ static long getTotalDataSize()
+ {
long data_size = 0;
for (int indx = 0; indx < numberMembers; indx++)
data_size += memberStorage[indx] * memberDims[indx];
return DIM0 * data_size;
}
- static long getDataSize() {
+ static long getDataSize()
+ {
long data_size = 0;
for (int indx = 0; indx < numberMembers; indx++)
data_size += memberStorage[indx] * memberDims[indx];
return data_size;
}
- static int getOffset(int memberItem) {
+ static int getOffset(int memberItem)
+ {
int data_offset = 0;
for (int indx = 0; indx < memberItem; indx++)
data_offset += memberStorage[indx];
@@ -76,60 +79,63 @@ public class H5Ex_T_Compound {
public double temperature;
public double pressure;
- Sensor(int serial_no, String location, double temperature, double pressure) {
- this.serial_no = serial_no;
- this.location = location;
+ Sensor(int serial_no, String location, double temperature, double pressure)
+ {
+ this.serial_no = serial_no;
+ this.location = location;
this.temperature = temperature;
- this.pressure = pressure;
+ this.pressure = pressure;
}
- Sensor(ByteBuffer databuf, int dbposition) {
- readBuffer(databuf, dbposition);
- }
+ Sensor(ByteBuffer databuf, int dbposition) { readBuffer(databuf, dbposition); }
- void writeBuffer(ByteBuffer databuf, int dbposition) {
+ void writeBuffer(ByteBuffer databuf, int dbposition)
+ {
databuf.putInt(dbposition + Sensor_Datatype.getOffset(0), serial_no);
byte[] temp_str = location.getBytes(Charset.forName("UTF-8"));
- int arraylen = (temp_str.length > MAXSTRINGSIZE) ? MAXSTRINGSIZE : temp_str.length;
+ int arraylen = (temp_str.length > MAXSTRINGSIZE) ? MAXSTRINGSIZE : temp_str.length;
for (int ndx = 0; ndx < arraylen; ndx++)
databuf.put(dbposition + Sensor_Datatype.getOffset(1) + ndx, temp_str[ndx]);
for (int ndx = arraylen; ndx < MAXSTRINGSIZE; ndx++)
- databuf.put(dbposition + Sensor_Datatype.getOffset(1) + arraylen, (byte) 0);
+ databuf.put(dbposition + Sensor_Datatype.getOffset(1) + arraylen, (byte)0);
databuf.putDouble(dbposition + Sensor_Datatype.getOffset(2), temperature);
databuf.putDouble(dbposition + Sensor_Datatype.getOffset(3), pressure);
}
- void readBuffer(ByteBuffer databuf, int dbposition) {
- this.serial_no = databuf.getInt(dbposition + Sensor_Datatype.getOffset(0));
+ void readBuffer(ByteBuffer databuf, int dbposition)
+ {
+ this.serial_no = databuf.getInt(dbposition + Sensor_Datatype.getOffset(0));
ByteBuffer stringbuf = databuf.duplicate();
stringbuf.position(dbposition + Sensor_Datatype.getOffset(1));
stringbuf.limit(dbposition + Sensor_Datatype.getOffset(1) + MAXSTRINGSIZE);
byte[] bytearr = new byte[stringbuf.remaining()];
stringbuf.get(bytearr);
- this.location = new String(bytearr, Charset.forName("UTF-8")).trim();
+ this.location = new String(bytearr, Charset.forName("UTF-8")).trim();
this.temperature = databuf.getDouble(dbposition + Sensor_Datatype.getOffset(2));
- this.pressure = databuf.getDouble(dbposition + Sensor_Datatype.getOffset(3));
+ this.pressure = databuf.getDouble(dbposition + Sensor_Datatype.getOffset(3));
}
@Override
- public String toString() {
- return String.format("Serial number : " + serial_no + "%n" +
- "Location : " + location + "%n" +
- "Temperature (F) : " + temperature + "%n" +
- "Pressure (inHg) : " + pressure + "%n");
+ public String toString()
+ {
+ return String.format("Serial number : " + serial_no + "%n"
+ + "Location : " + location + "%n"
+ + "Temperature (F) : " + temperature + "%n"
+ + "Pressure (inHg) : " + pressure + "%n");
}
}
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long strtype_id = HDF5Constants.H5I_INVALID_HID;
- long memtype_id = HDF5Constants.H5I_INVALID_HID;
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long strtype_id = HDF5Constants.H5I_INVALID_HID;
+ long memtype_id = HDF5Constants.H5I_INVALID_HID;
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
Sensor[] object_data = new Sensor[DIM0];
- byte[] dset_data = null;
+ byte[] dset_data = null;
// Initialize data.
object_data[0] = new Sensor(1153, new String("Exterior (static)"), 53.23, 24.57);
@@ -140,7 +146,7 @@ public class H5Ex_T_Compound {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -164,8 +170,8 @@ public class H5Ex_T_Compound {
long type_id = Sensor_Datatype.memberMemTypes[indx];
if (type_id == HDF5Constants.H5T_C_S1)
type_id = strtype_id;
- H5.H5Tinsert(memtype_id, Sensor_Datatype.memberNames[indx], Sensor_Datatype.getOffset(indx),
- type_id);
+ H5.H5Tinsert(memtype_id, Sensor_Datatype.memberNames[indx],
+ Sensor_Datatype.getOffset(indx), type_id);
}
}
}
@@ -184,8 +190,8 @@ public class H5Ex_T_Compound {
long type_id = Sensor_Datatype.memberFileTypes[indx];
if (type_id == HDF5Constants.H5T_C_S1)
type_id = strtype_id;
- H5.H5Tinsert(filetype_id, Sensor_Datatype.memberNames[indx], Sensor_Datatype.getOffset(indx),
- type_id);
+ H5.H5Tinsert(filetype_id, Sensor_Datatype.memberNames[indx],
+ Sensor_Datatype.getOffset(indx), type_id);
}
}
}
@@ -205,8 +211,9 @@ public class H5Ex_T_Compound {
// Create the dataset.
try {
if ((file_id >= 0) && (dataspace_id >= 0) && (filetype_id >= 0))
- dataset_id = H5.H5Dcreate(file_id, DATASETNAME, filetype_id, dataspace_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id =
+ H5.H5Dcreate(file_id, DATASETNAME, filetype_id, dataspace_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -214,16 +221,16 @@ public class H5Ex_T_Compound {
// Write the compound data to the dataset.
// allocate memory for read buffer.
- dset_data = new byte[(int)dims[0] * (int)Sensor_Datatype.getDataSize()];
+ dset_data = new byte[(int)dims[0] * (int)Sensor_Datatype.getDataSize()];
ByteBuffer outBuf = ByteBuffer.wrap(dset_data);
outBuf.order(ByteOrder.nativeOrder());
- for (int indx = 0; indx < (int) dims[0]; indx++) {
+ for (int indx = 0; indx < (int)dims[0]; indx++) {
object_data[indx].writeBuffer(outBuf, indx * (int)Sensor_Datatype.getDataSize());
}
try {
if ((dataset_id >= 0) && (memtype_id >= 0))
H5.H5Dwrite(dataset_id, memtype_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -281,16 +288,16 @@ public class H5Ex_T_Compound {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long strtype_id = HDF5Constants.H5I_INVALID_HID;
- long memtype_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long strtype_id = HDF5Constants.H5I_INVALID_HID;
+ long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
Sensor[] object_data2;
byte[] dset_data;
@@ -346,8 +353,8 @@ public class H5Ex_T_Compound {
long type_id = Sensor_Datatype.memberMemTypes[indx];
if (type_id == HDF5Constants.H5T_C_S1)
type_id = strtype_id;
- H5.H5Tinsert(memtype_id, Sensor_Datatype.memberNames[indx], Sensor_Datatype.getOffset(indx),
- type_id);
+ H5.H5Tinsert(memtype_id, Sensor_Datatype.memberNames[indx],
+ Sensor_Datatype.getOffset(indx), type_id);
}
}
}
@@ -356,19 +363,19 @@ public class H5Ex_T_Compound {
}
// allocate memory for read buffer.
- dset_data = new byte[(int) dims[0] * (int)Sensor_Datatype.getDataSize()];
+ dset_data = new byte[(int)dims[0] * (int)Sensor_Datatype.getDataSize()];
- object_data2 = new Sensor[(int) dims[0]];
+ object_data2 = new Sensor[(int)dims[0]];
// Read data.
try {
if ((dataset_id >= 0) && (memtype_id >= 0))
H5.H5Dread(dataset_id, memtype_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
ByteBuffer inBuf = ByteBuffer.wrap(dset_data);
inBuf.order(ByteOrder.nativeOrder());
- for (int indx = 0; indx < (int) dims[0]; indx++) {
+ for (int indx = 0; indx < (int)dims[0]; indx++) {
object_data2[indx] = new Sensor(inBuf, indx * (int)Sensor_Datatype.getDataSize());
}
}
@@ -425,10 +432,10 @@ public class H5Ex_T_Compound {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_Compound.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -436,5 +443,4 @@ public class H5Ex_T_Compound {
// data using malloc().
H5Ex_T_Compound.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_CompoundAttribute.java b/java/examples/datatypes/H5Ex_T_CompoundAttribute.java
index 58d2fb7..f331a1e 100644
--- a/java/examples/datatypes/H5Ex_T_CompoundAttribute.java
+++ b/java/examples/datatypes/H5Ex_T_CompoundAttribute.java
@@ -20,52 +20,55 @@
package examples.datatypes;
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-
import java.nio.ByteBuffer;
import java.nio.ByteOrder;
import java.nio.charset.Charset;
+import hdf.hdf5lib.H5;
+import hdf.hdf5lib.HDF5Constants;
+
public class H5Ex_T_CompoundAttribute {
- private static String FILENAME = "H5Ex_T_CompoundAttribute.h5";
- private static String DATASETNAME = "DS1";
- private static String ATTRIBUTENAME = "A1";
- private static final int DIM0 = 4;
- private static final int RANK = 1;
- protected static final int INTEGERSIZE = 4;
- protected static final int DOUBLESIZE = 8;
+ private static String FILENAME = "H5Ex_T_CompoundAttribute.h5";
+ private static String DATASETNAME = "DS1";
+ private static String ATTRIBUTENAME = "A1";
+ private static final int DIM0 = 4;
+ private static final int RANK = 1;
+ protected static final int INTEGERSIZE = 4;
+ protected static final int DOUBLESIZE = 8;
protected final static int MAXSTRINGSIZE = 80;
// Using Java Externalization will add a two-byte object header in
// the stream, which needs to be called out in the datatypes.
static class Sensor_Datatype {
static int numberMembers = 4;
- static int[] memberDims = { 1, 1, 1, 1 };
+ static int[] memberDims = {1, 1, 1, 1};
- static String[] memberNames = { "Serial number", "Location", "Temperature (F)", "Pressure (inHg)" };
- static long[] memberMemTypes = { HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5T_C_S1,
- HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5T_NATIVE_DOUBLE };
- static long[] memberFileTypes = { HDF5Constants.H5T_STD_I32BE, HDF5Constants.H5T_C_S1,
- HDF5Constants.H5T_IEEE_F64BE, HDF5Constants.H5T_IEEE_F64BE };
- static int[] memberStorage = { INTEGERSIZE, MAXSTRINGSIZE, DOUBLESIZE, DOUBLESIZE };
+ static String[] memberNames = {"Serial number", "Location", "Temperature (F)", "Pressure (inHg)"};
+ static long[] memberMemTypes = {HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5T_C_S1,
+ HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5T_NATIVE_DOUBLE};
+ static long[] memberFileTypes = {HDF5Constants.H5T_STD_I32BE, HDF5Constants.H5T_C_S1,
+ HDF5Constants.H5T_IEEE_F64BE, HDF5Constants.H5T_IEEE_F64BE};
+ static int[] memberStorage = {INTEGERSIZE, MAXSTRINGSIZE, DOUBLESIZE, DOUBLESIZE};
// Data size is the storage size for the members not the object.
- static long getTotalDataSize() {
+ static long getTotalDataSize()
+ {
long data_size = 0;
for (int indx = 0; indx < numberMembers; indx++)
data_size += memberStorage[indx] * memberDims[indx];
return DIM0 * data_size;
}
- static long getDataSize() {
+ static long getDataSize()
+ {
long data_size = 0;
for (int indx = 0; indx < numberMembers; indx++)
data_size += memberStorage[indx] * memberDims[indx];
return data_size;
}
- static int getOffset(int memberItem) {
+ static int getOffset(int memberItem)
+ {
int data_offset = 0;
for (int indx = 0; indx < memberItem; indx++)
data_offset += memberStorage[indx];
@@ -79,61 +82,64 @@ public class H5Ex_T_CompoundAttribute {
public double temperature;
public double pressure;
- Sensor(int serial_no, String location, double temperature, double pressure) {
- this.serial_no = serial_no;
- this.location = location;
+ Sensor(int serial_no, String location, double temperature, double pressure)
+ {
+ this.serial_no = serial_no;
+ this.location = location;
this.temperature = temperature;
- this.pressure = pressure;
+ this.pressure = pressure;
}
- Sensor(ByteBuffer databuf, int dbposition) {
- readBuffer(databuf, dbposition);
- }
+ Sensor(ByteBuffer databuf, int dbposition) { readBuffer(databuf, dbposition); }
- void writeBuffer(ByteBuffer databuf, int dbposition) {
+ void writeBuffer(ByteBuffer databuf, int dbposition)
+ {
databuf.putInt(dbposition + Sensor_Datatype.getOffset(0), serial_no);
byte[] temp_str = location.getBytes(Charset.forName("UTF-8"));
- int arraylen = (temp_str.length > MAXSTRINGSIZE) ? MAXSTRINGSIZE : temp_str.length;
+ int arraylen = (temp_str.length > MAXSTRINGSIZE) ? MAXSTRINGSIZE : temp_str.length;
for (int ndx = 0; ndx < arraylen; ndx++)
databuf.put(dbposition + Sensor_Datatype.getOffset(1) + ndx, temp_str[ndx]);
for (int ndx = arraylen; ndx < MAXSTRINGSIZE; ndx++)
- databuf.put(dbposition + Sensor_Datatype.getOffset(1) + arraylen, (byte) 0);
+ databuf.put(dbposition + Sensor_Datatype.getOffset(1) + arraylen, (byte)0);
databuf.putDouble(dbposition + Sensor_Datatype.getOffset(2), temperature);
databuf.putDouble(dbposition + Sensor_Datatype.getOffset(3), pressure);
}
- void readBuffer(ByteBuffer databuf, int dbposition) {
- this.serial_no = databuf.getInt(dbposition + Sensor_Datatype.getOffset(0));
+ void readBuffer(ByteBuffer databuf, int dbposition)
+ {
+ this.serial_no = databuf.getInt(dbposition + Sensor_Datatype.getOffset(0));
ByteBuffer stringbuf = databuf.duplicate();
stringbuf.position(dbposition + Sensor_Datatype.getOffset(1));
stringbuf.limit(dbposition + Sensor_Datatype.getOffset(1) + MAXSTRINGSIZE);
byte[] bytearr = new byte[stringbuf.remaining()];
stringbuf.get(bytearr);
- this.location = new String(bytearr, Charset.forName("UTF-8")).trim();
+ this.location = new String(bytearr, Charset.forName("UTF-8")).trim();
this.temperature = databuf.getDouble(dbposition + Sensor_Datatype.getOffset(2));
- this.pressure = databuf.getDouble(dbposition + Sensor_Datatype.getOffset(3));
+ this.pressure = databuf.getDouble(dbposition + Sensor_Datatype.getOffset(3));
}
@Override
- public String toString() {
- return String.format("Serial number : " + serial_no + "%n" +
- "Location : " + location + "%n" +
- "Temperature (F) : " + temperature + "%n" +
- "Pressure (inHg) : " + pressure + "%n");
+ public String toString()
+ {
+ return String.format("Serial number : " + serial_no + "%n"
+ + "Location : " + location + "%n"
+ + "Temperature (F) : " + temperature + "%n"
+ + "Pressure (inHg) : " + pressure + "%n");
}
}
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long strtype_id = HDF5Constants.H5I_INVALID_HID;
- long memtype_id = HDF5Constants.H5I_INVALID_HID;
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long strtype_id = HDF5Constants.H5I_INVALID_HID;
+ long memtype_id = HDF5Constants.H5I_INVALID_HID;
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long attribute_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
Sensor[] object_data = new Sensor[DIM0];
- byte[] dset_data = null;
+ byte[] dset_data = null;
// Initialize data.
object_data[0] = new Sensor(1153, new String("Exterior (static)"), 53.23, 24.57);
@@ -144,7 +150,7 @@ public class H5Ex_T_CompoundAttribute {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -168,8 +174,8 @@ public class H5Ex_T_CompoundAttribute {
long type_id = Sensor_Datatype.memberMemTypes[indx];
if (type_id == HDF5Constants.H5T_C_S1)
type_id = strtype_id;
- H5.H5Tinsert(memtype_id, Sensor_Datatype.memberNames[indx], Sensor_Datatype.getOffset(indx),
- type_id);
+ H5.H5Tinsert(memtype_id, Sensor_Datatype.memberNames[indx],
+ Sensor_Datatype.getOffset(indx), type_id);
}
}
}
@@ -188,8 +194,8 @@ public class H5Ex_T_CompoundAttribute {
long type_id = Sensor_Datatype.memberFileTypes[indx];
if (type_id == HDF5Constants.H5T_C_S1)
type_id = strtype_id;
- H5.H5Tinsert(filetype_id, Sensor_Datatype.memberNames[indx], Sensor_Datatype.getOffset(indx),
- type_id);
+ H5.H5Tinsert(filetype_id, Sensor_Datatype.memberNames[indx],
+ Sensor_Datatype.getOffset(indx), type_id);
}
}
}
@@ -202,7 +208,8 @@ public class H5Ex_T_CompoundAttribute {
dataspace_id = H5.H5Screate(HDF5Constants.H5S_SCALAR);
if (dataspace_id >= 0) {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
@@ -224,17 +231,17 @@ public class H5Ex_T_CompoundAttribute {
try {
if ((dataset_id >= 0) && (dataspace_id >= 0) && (filetype_id >= 0))
attribute_id = H5.H5Acreate(dataset_id, ATTRIBUTENAME, filetype_id, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
}
// Write the compound data.
- dset_data = new byte[(int) dims[0] * (int)Sensor_Datatype.getDataSize()];
+ dset_data = new byte[(int)dims[0] * (int)Sensor_Datatype.getDataSize()];
ByteBuffer outBuf = ByteBuffer.wrap(dset_data);
outBuf.order(ByteOrder.nativeOrder());
- for (int indx = 0; indx < (int) dims[0]; indx++) {
+ for (int indx = 0; indx < (int)dims[0]; indx++) {
object_data[indx].writeBuffer(outBuf, indx * (int)Sensor_Datatype.getDataSize());
}
try {
@@ -305,17 +312,17 @@ public class H5Ex_T_CompoundAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long strtype_id = HDF5Constants.H5I_INVALID_HID;
- long memtype_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long strtype_id = HDF5Constants.H5I_INVALID_HID;
+ long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
+ long[] dims = {DIM0};
Sensor[] object_data2;
byte[] dset_data;
@@ -339,7 +346,7 @@ public class H5Ex_T_CompoundAttribute {
try {
if (dataset_id >= 0)
attribute_id = H5.H5Aopen_by_name(dataset_id, ".", ATTRIBUTENAME, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -382,8 +389,8 @@ public class H5Ex_T_CompoundAttribute {
long type_id = Sensor_Datatype.memberMemTypes[indx];
if (type_id == HDF5Constants.H5T_C_S1)
type_id = strtype_id;
- H5.H5Tinsert(memtype_id, Sensor_Datatype.memberNames[indx], Sensor_Datatype.getOffset(indx),
- type_id);
+ H5.H5Tinsert(memtype_id, Sensor_Datatype.memberNames[indx],
+ Sensor_Datatype.getOffset(indx), type_id);
}
}
}
@@ -392,9 +399,9 @@ public class H5Ex_T_CompoundAttribute {
}
// allocate memory for read buffer.
- dset_data = new byte[(int) dims[0] * (int)Sensor_Datatype.getDataSize()];
+ dset_data = new byte[(int)dims[0] * (int)Sensor_Datatype.getDataSize()];
- object_data2 = new Sensor[(int) dims[0]];
+ object_data2 = new Sensor[(int)dims[0]];
// Read data.
try {
@@ -403,7 +410,7 @@ public class H5Ex_T_CompoundAttribute {
ByteBuffer inBuf = ByteBuffer.wrap(dset_data);
inBuf.order(ByteOrder.nativeOrder());
- for (int indx = 0; indx < (int) dims[0]; indx++) {
+ for (int indx = 0; indx < (int)dims[0]; indx++) {
object_data2[indx] = new Sensor(inBuf, indx * (int)Sensor_Datatype.getDataSize());
}
}
@@ -468,10 +475,10 @@ public class H5Ex_T_CompoundAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_CompoundAttribute.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -479,5 +486,4 @@ public class H5Ex_T_CompoundAttribute {
// data using malloc().
H5Ex_T_CompoundAttribute.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_Float.java b/java/examples/datatypes/H5Ex_T_Float.java
index e8da7f6..9ca099e 100644
--- a/java/examples/datatypes/H5Ex_T_Float.java
+++ b/java/examples/datatypes/H5Ex_T_Float.java
@@ -28,17 +28,18 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_Float {
- private static String FILENAME = "H5Ex_T_Float.h5";
+ private static String FILENAME = "H5Ex_T_Float.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM0 = 4;
- private static final int DIM1 = 7;
- private static final int RANK = 2;
-
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0, DIM1 };
+ private static final int DIM0 = 4;
+ private static final int DIM1 = 7;
+ private static final int RANK = 2;
+
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0, DIM1};
double[][] dset_data = new double[DIM0][DIM1];
// Initialize data.
@@ -50,7 +51,7 @@ public class H5Ex_T_Float {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -73,7 +74,8 @@ public class H5Ex_T_Float {
try {
if ((file_id >= 0) && (dataspace_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_IEEE_F64LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -82,8 +84,8 @@ public class H5Ex_T_Float {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -115,14 +117,14 @@ public class H5Ex_T_Float {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0, DIM1 };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0, DIM1};
double[][] dset_data;
// Open an existing file.
@@ -161,13 +163,13 @@ public class H5Ex_T_Float {
// Allocate array of pointers to two-dimensional arrays (the
// elements of the dataset.
- dset_data = new double[(int) dims[0]][(int) (dims[1])];
+ dset_data = new double[(int)dims[0]][(int)(dims[1])];
// Read data.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -211,10 +213,10 @@ public class H5Ex_T_Float {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_Float.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -222,5 +224,4 @@ public class H5Ex_T_Float {
// data using malloc().
H5Ex_T_Float.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_FloatAttribute.java b/java/examples/datatypes/H5Ex_T_FloatAttribute.java
index eb8e1f8..426c4dd 100644
--- a/java/examples/datatypes/H5Ex_T_FloatAttribute.java
+++ b/java/examples/datatypes/H5Ex_T_FloatAttribute.java
@@ -28,19 +28,20 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_FloatAttribute {
- private static String FILENAME = "H5Ex_T_FloatAttribute.h5";
- private static String DATASETNAME = "DS1";
+ private static String FILENAME = "H5Ex_T_FloatAttribute.h5";
+ private static String DATASETNAME = "DS1";
private static String ATTRIBUTENAME = "A1";
- private static final int DIM0 = 4;
- private static final int DIM1 = 7;
- private static final int RANK = 2;
-
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0, DIM1 };
+ private static final int DIM0 = 4;
+ private static final int DIM1 = 7;
+ private static final int RANK = 2;
+
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long attribute_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0, DIM1};
double[][] dset_data = new double[DIM0][DIM1];
// Initialize data.
@@ -52,7 +53,7 @@ public class H5Ex_T_FloatAttribute {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -63,7 +64,8 @@ public class H5Ex_T_FloatAttribute {
dataspace_id = H5.H5Screate(HDF5Constants.H5S_SCALAR);
if (dataspace_id >= 0) {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
@@ -84,8 +86,9 @@ public class H5Ex_T_FloatAttribute {
// Create the attribute and write the array data to it.
try {
if ((dataset_id >= 0) && (dataspace_id >= 0))
- attribute_id = H5.H5Acreate(dataset_id, ATTRIBUTENAME, HDF5Constants.H5T_IEEE_F64LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attribute_id =
+ H5.H5Acreate(dataset_id, ATTRIBUTENAME, HDF5Constants.H5T_IEEE_F64LE, dataspace_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -134,15 +137,15 @@ public class H5Ex_T_FloatAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0, DIM1 };
+ long[] dims = {DIM0, DIM1};
double[][] dset_data;
// Open an existing file.
@@ -165,7 +168,7 @@ public class H5Ex_T_FloatAttribute {
try {
if (dataset_id >= 0)
attribute_id = H5.H5Aopen_by_name(dataset_id, ".", ATTRIBUTENAME, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -190,7 +193,7 @@ public class H5Ex_T_FloatAttribute {
// Allocate array of pointers to two-dimensional arrays (the
// elements of the dataset.
- dset_data = new double[(int) dims[0]][(int) (dims[1])];
+ dset_data = new double[(int)dims[0]][(int)(dims[1])];
// Read data.
try {
@@ -247,10 +250,10 @@ public class H5Ex_T_FloatAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_FloatAttribute.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -258,5 +261,4 @@ public class H5Ex_T_FloatAttribute {
// data using malloc().
H5Ex_T_FloatAttribute.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_Integer.java b/java/examples/datatypes/H5Ex_T_Integer.java
index bb8e0cb..919ea7e 100644
--- a/java/examples/datatypes/H5Ex_T_Integer.java
+++ b/java/examples/datatypes/H5Ex_T_Integer.java
@@ -26,17 +26,18 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_Integer {
- private static String FILENAME = "H5Ex_T_Integer.h5";
+ private static String FILENAME = "H5Ex_T_Integer.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM0 = 4;
- private static final int DIM1 = 7;
- private static final int RANK = 2;
+ private static final int DIM0 = 4;
+ private static final int DIM1 = 7;
+ private static final int RANK = 2;
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0, DIM1 };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0, DIM1};
int[][] dset_data = new int[DIM0][DIM1];
// Initialize data.
@@ -48,7 +49,7 @@ public class H5Ex_T_Integer {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -70,7 +71,8 @@ public class H5Ex_T_Integer {
try {
if ((file_id >= 0) && (dataspace_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I64BE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -79,8 +81,8 @@ public class H5Ex_T_Integer {
// Write the data to the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -112,14 +114,14 @@ public class H5Ex_T_Integer {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0, DIM1 };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0, DIM1};
int[][] dset_data;
// Open an existing file.
@@ -158,13 +160,13 @@ public class H5Ex_T_Integer {
// Allocate array of pointers to two-dimensional arrays (the
// elements of the dataset.
- dset_data = new int[(int) dims[0]][(int) (dims[1])];
+ dset_data = new int[(int)dims[0]][(int)(dims[1])];
// Read data.
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -208,10 +210,10 @@ public class H5Ex_T_Integer {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_Integer.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -219,5 +221,4 @@ public class H5Ex_T_Integer {
// data using malloc().
H5Ex_T_Integer.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_IntegerAttribute.java b/java/examples/datatypes/H5Ex_T_IntegerAttribute.java
index b0df5e4..4ec98c4 100644
--- a/java/examples/datatypes/H5Ex_T_IntegerAttribute.java
+++ b/java/examples/datatypes/H5Ex_T_IntegerAttribute.java
@@ -26,19 +26,20 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_IntegerAttribute {
- private static String FILENAME = "H5Ex_T_IntegerAttribute.h5";
- private static String DATASETNAME = "DS1";
+ private static String FILENAME = "H5Ex_T_IntegerAttribute.h5";
+ private static String DATASETNAME = "DS1";
private static String ATTRIBUTENAME = "A1";
- private static final int DIM0 = 4;
- private static final int DIM1 = 7;
- private static final int RANK = 2;
+ private static final int DIM0 = 4;
+ private static final int DIM1 = 7;
+ private static final int RANK = 2;
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0, DIM1 };
+ long[] dims = {DIM0, DIM1};
int[][] dset_data = new int[DIM0][DIM1];
// Initialize data.
@@ -50,7 +51,7 @@ public class H5Ex_T_IntegerAttribute {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -61,7 +62,8 @@ public class H5Ex_T_IntegerAttribute {
dataspace_id = H5.H5Screate(HDF5Constants.H5S_SCALAR);
if (dataspace_id >= 0) {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
@@ -82,8 +84,9 @@ public class H5Ex_T_IntegerAttribute {
// Create the attribute and write the array data to it.
try {
if ((dataset_id >= 0) && (dataspace_id >= 0))
- attribute_id = H5.H5Acreate(dataset_id, ATTRIBUTENAME, HDF5Constants.H5T_STD_I64BE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attribute_id =
+ H5.H5Acreate(dataset_id, ATTRIBUTENAME, HDF5Constants.H5T_STD_I64BE, dataspace_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -132,15 +135,15 @@ public class H5Ex_T_IntegerAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0, DIM1 };
+ long[] dims = {DIM0, DIM1};
int[][] dset_data;
// Open an existing file.
@@ -163,7 +166,7 @@ public class H5Ex_T_IntegerAttribute {
try {
if (dataset_id >= 0)
attribute_id = H5.H5Aopen_by_name(dataset_id, ".", ATTRIBUTENAME, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -188,7 +191,7 @@ public class H5Ex_T_IntegerAttribute {
// Allocate array of pointers to two-dimensional arrays (the
// elements of the dataset.
- dset_data = new int[(int) dims[0]][(int) (dims[1])];
+ dset_data = new int[(int)dims[0]][(int)(dims[1])];
// Read data.
try {
@@ -245,10 +248,10 @@ public class H5Ex_T_IntegerAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_IntegerAttribute.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -256,5 +259,4 @@ public class H5Ex_T_IntegerAttribute {
// data using malloc().
H5Ex_T_IntegerAttribute.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_ObjectReference.java b/java/examples/datatypes/H5Ex_T_ObjectReference.java
index b0f98de..9220d8f 100644
--- a/java/examples/datatypes/H5Ex_T_ObjectReference.java
+++ b/java/examples/datatypes/H5Ex_T_ObjectReference.java
@@ -28,54 +28,50 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_ObjectReference {
- private static String FILENAME = "H5Ex_T_ObjectReference.h5";
- private static String DATASETNAME = "DS1";
+ private static String FILENAME = "H5Ex_T_ObjectReference.h5";
+ private static String DATASETNAME = "DS1";
private static String DATASETNAME2 = "DS2";
- private static String GROUPNAME = "G1";
- private static final int DIM0 = 2;
- private static final int RANK = 1;
+ private static String GROUPNAME = "G1";
+ private static final int DIM0 = 2;
+ private static final int RANK = 1;
// Values for the status of space allocation
enum H5G_obj {
- H5G_UNKNOWN(HDF5Constants.H5O_TYPE_UNKNOWN), /* Unknown object type */
- H5G_GROUP(HDF5Constants.H5O_TYPE_GROUP), /* Object is a group */
- H5G_DATASET(HDF5Constants.H5O_TYPE_DATASET), /* Object is a dataset */
+ H5G_UNKNOWN(HDF5Constants.H5O_TYPE_UNKNOWN), /* Unknown object type */
+ H5G_GROUP(HDF5Constants.H5O_TYPE_GROUP), /* Object is a group */
+ H5G_DATASET(HDF5Constants.H5O_TYPE_DATASET), /* Object is a dataset */
H5G_TYPE(HDF5Constants.H5O_TYPE_NAMED_DATATYPE); /* Object is a named data type */
private static final Map<Integer, H5G_obj> lookup = new HashMap<Integer, H5G_obj>();
- static {
+ static
+ {
for (H5G_obj s : EnumSet.allOf(H5G_obj.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5G_obj(int layout_type) {
- this.code = layout_type;
- }
+ H5G_obj(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5G_obj get(int code) {
- return lookup.get(code);
- }
+ public static H5G_obj get(int code) { return lookup.get(code); }
}
- private static void writeObjRef() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long group_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
+ private static void writeObjRef()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long filespace_id = HDF5Constants.H5I_INVALID_HID;
+ long group_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
byte[][] dset_data = new byte[DIM0][HDF5Constants.H5R_REF_BUF_SIZE];
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -86,7 +82,8 @@ public class H5Ex_T_ObjectReference {
dataspace_id = H5.H5Screate(HDF5Constants.H5S_SCALAR);
if ((file_id >= 0) && (dataspace_id >= 0)) {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME2, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
if (dataset_id >= 0)
H5.H5Dclose(dataset_id);
dataset_id = HDF5Constants.H5I_INVALID_HID;
@@ -101,8 +98,8 @@ public class H5Ex_T_ObjectReference {
// Create a group in the file.
try {
if (file_id >= 0)
- group_id = H5.H5Gcreate(file_id, GROUPNAME, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ group_id = H5.H5Gcreate(file_id, GROUPNAME, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
if (group_id >= 0)
H5.H5Gclose(group_id);
group_id = HDF5Constants.H5I_INVALID_HID;
@@ -119,7 +116,7 @@ public class H5Ex_T_ObjectReference {
catch (Throwable err) {
err.printStackTrace();
}
-
+
try {
dset_data[1] = H5.H5Rcreate_object(file_id, DATASETNAME2, HDF5Constants.H5P_DEFAULT);
}
@@ -127,7 +124,7 @@ public class H5Ex_T_ObjectReference {
err.printStackTrace();
}
}
-
+
// Create dataspace. Setting maximum size to NULL sets the maximum
// size to be the current size.
try {
@@ -136,22 +133,23 @@ public class H5Ex_T_ObjectReference {
catch (Exception e) {
e.printStackTrace();
}
-
+
// Create the dataset.
try {
if ((file_id >= 0) && (filespace_id >= 0))
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_REF, filespace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
}
-
+
// Write the object references to it.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -161,8 +159,16 @@ public class H5Ex_T_ObjectReference {
ex.printStackTrace();
}
finally {
- try {H5.H5Rdestroy(dset_data[1]);} catch (Exception ex) {}
- try {H5.H5Rdestroy(dset_data[0]);} catch (Exception ex) {}
+ try {
+ H5.H5Rdestroy(dset_data[1]);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ H5.H5Rdestroy(dset_data[0]);
+ }
+ catch (Exception ex) {
+ }
}
// End access to the dataset and release resources used by it.
@@ -193,13 +199,14 @@ public class H5Ex_T_ObjectReference {
}
}
- private static void readObjRef() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- int object_type = -1;
- long object_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
+ private static void readObjRef()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ int object_type = -1;
+ long object_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
byte[][] dset_data = new byte[DIM0][HDF5Constants.H5R_REF_BUF_SIZE];
// Open an existing file.
@@ -209,23 +216,24 @@ public class H5Ex_T_ObjectReference {
// Open an existing dataset.
try {
dataset_id = H5.H5Dopen(file_id, DATASETNAME, HDF5Constants.H5P_DEFAULT);
-
+
try {
// Get dataspace and allocate memory for read buffer.
dataspace_id = H5.H5Dget_space(dataset_id);
H5.H5Sget_simple_extent_dims(dataspace_id, dims, null);
-
+
// Read data.
- H5.H5Dread(dataset_id, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
-
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
+
// Output the data to the screen.
for (int indx = 0; indx < dims[0]; indx++) {
System.out.println(DATASETNAME + "[" + indx + "]:");
System.out.print(" ->");
// Open the referenced object, get its name and type.
try {
- object_id = H5.H5Ropen_object(dset_data[indx], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ object_id = H5.H5Ropen_object(dset_data[indx], HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
try {
object_type = H5.H5Rget_obj_type3(dset_data[indx], HDF5Constants.H5R_OBJECT);
String obj_name = null;
@@ -255,14 +263,22 @@ public class H5Ex_T_ObjectReference {
e.printStackTrace();
}
finally {
- try {H5.H5Oclose(object_id);} catch (Exception e) {}
+ try {
+ H5.H5Oclose(object_id);
+ }
+ catch (Exception e) {
+ }
}
}
catch (Exception e4) {
e4.printStackTrace();
}
finally {
- try {H5.H5Rdestroy(dset_data[indx]);} catch (Exception e4) {}
+ try {
+ H5.H5Rdestroy(dset_data[indx]);
+ }
+ catch (Exception e4) {
+ }
}
} // end for
}
@@ -270,25 +286,38 @@ public class H5Ex_T_ObjectReference {
e3.printStackTrace();
}
finally {
- try {H5.H5Sclose(dataspace_id);} catch (Exception e3) {}
+ try {
+ H5.H5Sclose(dataspace_id);
+ }
+ catch (Exception e3) {
+ }
}
}
catch (Exception e2) {
e2.printStackTrace();
}
finally {
- try {H5.H5Dclose(dataset_id);} catch (Exception e2) {}
+ try {
+ H5.H5Dclose(dataset_id);
+ }
+ catch (Exception e2) {
+ }
}
}
catch (Exception e1) {
e1.printStackTrace();
}
finally {
- try {H5.H5Fclose(file_id);} catch (Exception e1) {}
+ try {
+ H5.H5Fclose(file_id);
+ }
+ catch (Exception e1) {
+ }
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
// Check if gzip compression is available and can be used for both
// compression and decompression. Normally we do not perform error
// checking in these examples for the sake of clarity, but in this
@@ -297,5 +326,4 @@ public class H5Ex_T_ObjectReference {
H5Ex_T_ObjectReference.writeObjRef();
H5Ex_T_ObjectReference.readObjRef();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_ObjectReferenceAttribute.java b/java/examples/datatypes/H5Ex_T_ObjectReferenceAttribute.java
index f61ae0d..be84e51 100644
--- a/java/examples/datatypes/H5Ex_T_ObjectReferenceAttribute.java
+++ b/java/examples/datatypes/H5Ex_T_ObjectReferenceAttribute.java
@@ -28,55 +28,51 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_ObjectReferenceAttribute {
- private static String FILENAME = "H5Ex_T_ObjectReferenceAttribute.h5";
- private static String DATASETNAME = "DS1";
+ private static String FILENAME = "H5Ex_T_ObjectReferenceAttribute.h5";
+ private static String DATASETNAME = "DS1";
private static String ATTRIBUTENAME = "A1";
- private static String DATASETNAME2 = "DS2";
- private static String GROUPNAME = "G1";
- private static final int DIM0 = 2;
- private static final int RANK = 1;
+ private static String DATASETNAME2 = "DS2";
+ private static String GROUPNAME = "G1";
+ private static final int DIM0 = 2;
+ private static final int RANK = 1;
// Values for the status of space allocation
enum H5G_obj {
- H5G_UNKNOWN(HDF5Constants.H5O_TYPE_UNKNOWN), /* Unknown object type */
- H5G_GROUP(HDF5Constants.H5O_TYPE_GROUP), /* Object is a group */
- H5G_DATASET(HDF5Constants.H5O_TYPE_DATASET), /* Object is a dataset */
+ H5G_UNKNOWN(HDF5Constants.H5O_TYPE_UNKNOWN), /* Unknown object type */
+ H5G_GROUP(HDF5Constants.H5O_TYPE_GROUP), /* Object is a group */
+ H5G_DATASET(HDF5Constants.H5O_TYPE_DATASET), /* Object is a dataset */
H5G_TYPE(HDF5Constants.H5O_TYPE_NAMED_DATATYPE); /* Object is a named data type */
private static final Map<Integer, H5G_obj> lookup = new HashMap<Integer, H5G_obj>();
- static {
+ static
+ {
for (H5G_obj s : EnumSet.allOf(H5G_obj.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5G_obj(int layout_type) {
- this.code = layout_type;
- }
+ H5G_obj(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5G_obj get(int code) {
- return lookup.get(code);
- }
+ public static H5G_obj get(int code) { return lookup.get(code); }
}
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long group_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long group_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long attribute_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
byte[][] dset_data = new byte[DIM0][HDF5Constants.H5R_REF_BUF_SIZE];
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -87,7 +83,8 @@ public class H5Ex_T_ObjectReferenceAttribute {
dataspace_id = H5.H5Screate(HDF5Constants.H5S_SCALAR);
if ((file_id >= 0) && (dataspace_id >= 0)) {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME2, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
if (dataset_id >= 0)
H5.H5Dclose(dataset_id);
dataset_id = HDF5Constants.H5I_INVALID_HID;
@@ -102,8 +99,8 @@ public class H5Ex_T_ObjectReferenceAttribute {
// Create a group in the file.
try {
if (file_id >= 0)
- group_id = H5.H5Gcreate(file_id, GROUPNAME, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ group_id = H5.H5Gcreate(file_id, GROUPNAME, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
if (group_id >= 0)
H5.H5Gclose(group_id);
group_id = HDF5Constants.H5I_INVALID_HID;
@@ -120,7 +117,7 @@ public class H5Ex_T_ObjectReferenceAttribute {
catch (Throwable err) {
err.printStackTrace();
}
-
+
try {
dset_data[1] = H5.H5Rcreate_object(file_id, DATASETNAME2, HDF5Constants.H5P_DEFAULT);
}
@@ -135,7 +132,8 @@ public class H5Ex_T_ObjectReferenceAttribute {
dataspace_id = H5.H5Screate(HDF5Constants.H5S_SCALAR);
if (dataspace_id >= 0) {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
@@ -143,7 +141,7 @@ public class H5Ex_T_ObjectReferenceAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
+
// Create dataspace. Setting maximum size to NULL sets the maximum
// size to be the current size.
try {
@@ -152,17 +150,18 @@ public class H5Ex_T_ObjectReferenceAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
+
// Create the attribute and write the array data to it.
try {
if ((dataset_id >= 0) && (dataspace_id >= 0))
- attribute_id = H5.H5Acreate(dataset_id, ATTRIBUTENAME, HDF5Constants.H5T_STD_REF, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attribute_id =
+ H5.H5Acreate(dataset_id, ATTRIBUTENAME, HDF5Constants.H5T_STD_REF, dataspace_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
}
-
+
// Write the dataset.
try {
if (attribute_id >= 0)
@@ -176,8 +175,16 @@ public class H5Ex_T_ObjectReferenceAttribute {
ex.printStackTrace();
}
finally {
- try {H5.H5Rdestroy(dset_data[1]);} catch (Exception ex) {}
- try {H5.H5Rdestroy(dset_data[0]);} catch (Exception ex) {}
+ try {
+ H5.H5Rdestroy(dset_data[1]);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ H5.H5Rdestroy(dset_data[0]);
+ }
+ catch (Exception ex) {
+ }
}
// End access to the dataset and release resources used by it.
@@ -215,14 +222,15 @@ public class H5Ex_T_ObjectReferenceAttribute {
}
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long attribute_id = HDF5Constants.H5I_INVALID_HID;
- int object_type = -1;
- long object_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long attribute_id = HDF5Constants.H5I_INVALID_HID;
+ int object_type = -1;
+ long object_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
byte[][] dset_data = new byte[DIM0][HDF5Constants.H5R_REF_BUF_SIZE];
// Open an existing file.
@@ -232,28 +240,30 @@ public class H5Ex_T_ObjectReferenceAttribute {
// Open an existing dataset.
try {
dataset_id = H5.H5Dopen(file_id, DATASETNAME, HDF5Constants.H5P_DEFAULT);
-
+
try {
- attribute_id = H5.H5Aopen_by_name(dataset_id, ".", ATTRIBUTENAME, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
-
+ attribute_id = H5.H5Aopen_by_name(dataset_id, ".", ATTRIBUTENAME,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+
// Get dataspace and allocate memory for read buffer.
try {
dataspace_id = H5.H5Aget_space(attribute_id);
H5.H5Sget_simple_extent_dims(dataspace_id, dims, null);
-
+
// Read data.
H5.H5Aread(attribute_id, HDF5Constants.H5T_STD_REF, dset_data);
-
+
// Output the data to the screen.
for (int indx = 0; indx < dims[0]; indx++) {
System.out.println(ATTRIBUTENAME + "[" + indx + "]:");
System.out.print(" ->");
// Open the referenced object, get its name and type.
try {
- object_id = H5.H5Ropen_object(dset_data[indx], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ object_id = H5.H5Ropen_object(dset_data[indx], HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
try {
- object_type = H5.H5Rget_obj_type3(dset_data[indx], HDF5Constants.H5R_OBJECT);
+ object_type =
+ H5.H5Rget_obj_type3(dset_data[indx], HDF5Constants.H5R_OBJECT);
String obj_name = null;
if (object_type >= 0) {
// Get the name.
@@ -281,14 +291,22 @@ public class H5Ex_T_ObjectReferenceAttribute {
e.printStackTrace();
}
finally {
- try {H5.H5Oclose(object_id);} catch (Exception e) {}
+ try {
+ H5.H5Oclose(object_id);
+ }
+ catch (Exception e) {
+ }
}
}
catch (Exception e5) {
e5.printStackTrace();
}
finally {
- try {H5.H5Rdestroy(dset_data[indx]);} catch (Exception e5) {}
+ try {
+ H5.H5Rdestroy(dset_data[indx]);
+ }
+ catch (Exception e5) {
+ }
}
} // end for
}
@@ -296,32 +314,49 @@ public class H5Ex_T_ObjectReferenceAttribute {
e4.printStackTrace();
}
finally {
- try {H5.H5Sclose(dataspace_id);} catch (Exception e3) {}
+ try {
+ H5.H5Sclose(dataspace_id);
+ }
+ catch (Exception e3) {
+ }
}
}
catch (Exception e3) {
e3.printStackTrace();
}
finally {
- try {H5.H5Aclose(attribute_id);} catch (Exception e4) {}
+ try {
+ H5.H5Aclose(attribute_id);
+ }
+ catch (Exception e4) {
+ }
}
}
catch (Exception e2) {
e2.printStackTrace();
}
finally {
- try {H5.H5Dclose(dataset_id);} catch (Exception e2) {}
+ try {
+ H5.H5Dclose(dataset_id);
+ }
+ catch (Exception e2) {
+ }
}
}
catch (Exception e1) {
e1.printStackTrace();
}
finally {
- try {H5.H5Fclose(file_id);} catch (Exception e1) {}
+ try {
+ H5.H5Fclose(file_id);
+ }
+ catch (Exception e1) {
+ }
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_ObjectReferenceAttribute.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -329,5 +364,4 @@ public class H5Ex_T_ObjectReferenceAttribute {
// data using malloc().
H5Ex_T_ObjectReferenceAttribute.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_Opaque.java b/java/examples/datatypes/H5Ex_T_Opaque.java
index e851fb2..419a5c8 100644
--- a/java/examples/datatypes/H5Ex_T_Opaque.java
+++ b/java/examples/datatypes/H5Ex_T_Opaque.java
@@ -24,32 +24,33 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_Opaque {
- private static String FILENAME = "H5Ex_T_Opaque.h5";
+ private static String FILENAME = "H5Ex_T_Opaque.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM0 = 4;
- private static final int LEN = 7;
- private static final int RANK = 1;
+ private static final int DIM0 = 4;
+ private static final int LEN = 7;
+ private static final int RANK = 1;
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long datatype_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
- byte[] dset_data = new byte[DIM0 * LEN];
- byte[] str_data = { 'O', 'P', 'A', 'Q', 'U', 'E' };
+ long datatype_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
+ byte[] dset_data = new byte[DIM0 * LEN];
+ byte[] str_data = {'O', 'P', 'A', 'Q', 'U', 'E'};
// Initialize data.
for (int indx = 0; indx < DIM0; indx++) {
for (int jndx = 0; jndx < LEN - 1; jndx++)
dset_data[jndx + indx * LEN] = str_data[jndx];
- dset_data[LEN - 1 + indx * LEN] = (byte) (indx + '0');
+ dset_data[LEN - 1 + indx * LEN] = (byte)(indx + '0');
}
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -82,8 +83,9 @@ public class H5Ex_T_Opaque {
// automatically converts between different integer types.
try {
if ((file_id >= 0) && (datatype_id >= 0) && (dataspace_id >= 0))
- dataset_id = H5.H5Dcreate(file_id, DATASETNAME, datatype_id, dataspace_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id =
+ H5.H5Dcreate(file_id, DATASETNAME, datatype_id, dataspace_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -93,7 +95,7 @@ public class H5Ex_T_Opaque {
try {
if ((dataset_id >= 0) && (datatype_id >= 0))
H5.H5Dwrite(dataset_id, datatype_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -133,16 +135,16 @@ public class H5Ex_T_Opaque {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long datatype_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long type_len = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long type_len = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
byte[] dset_data;
String tag_name = null;
@@ -194,13 +196,13 @@ public class H5Ex_T_Opaque {
}
// Allocate buffer.
- dset_data = new byte[(int) (dims[0] * type_len)];
+ dset_data = new byte[(int)(dims[0] * type_len)];
// Read data.
try {
if ((dataset_id >= 0) && (datatype_id >= 0))
H5.H5Dread(dataset_id, datatype_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -211,7 +213,7 @@ public class H5Ex_T_Opaque {
for (int indx = 0; indx < dims[0]; indx++) {
System.out.print(DATASETNAME + "[" + indx + "]: ");
for (int jndx = 0; jndx < type_len; jndx++) {
- char temp = (char) dset_data[jndx + indx * (int)type_len];
+ char temp = (char)dset_data[jndx + indx * (int)type_len];
System.out.print(temp);
}
System.out.println("");
@@ -252,10 +254,10 @@ public class H5Ex_T_Opaque {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_Opaque.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -263,5 +265,4 @@ public class H5Ex_T_Opaque {
// data using malloc().
H5Ex_T_Opaque.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_OpaqueAttribute.java b/java/examples/datatypes/H5Ex_T_OpaqueAttribute.java
index 3e16ab4..b8a15a6 100644
--- a/java/examples/datatypes/H5Ex_T_OpaqueAttribute.java
+++ b/java/examples/datatypes/H5Ex_T_OpaqueAttribute.java
@@ -24,34 +24,35 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_OpaqueAttribute {
- private static String FILENAME = "H5Ex_T_OpaqueAttribute.h5";
- private static String DATASETNAME = "DS1";
+ private static String FILENAME = "H5Ex_T_OpaqueAttribute.h5";
+ private static String DATASETNAME = "DS1";
private static String ATTRIBUTENAME = "A1";
- private static final int DIM0 = 4;
- private static final int LEN = 7;
- private static final int RANK = 1;
+ private static final int DIM0 = 4;
+ private static final int LEN = 7;
+ private static final int RANK = 1;
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long datatype_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long datatype_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
- byte[] dset_data = new byte[DIM0 * LEN];
- byte[] str_data = { 'O', 'P', 'A', 'Q', 'U', 'E' };
+ long[] dims = {DIM0};
+ byte[] dset_data = new byte[DIM0 * LEN];
+ byte[] str_data = {'O', 'P', 'A', 'Q', 'U', 'E'};
// Initialize data.
for (int indx = 0; indx < DIM0; indx++) {
for (int jndx = 0; jndx < LEN - 1; jndx++)
dset_data[jndx + indx * LEN] = str_data[jndx];
- dset_data[LEN - 1 + indx * LEN] = (byte) (indx + '0');
+ dset_data[LEN - 1 + indx * LEN] = (byte)(indx + '0');
}
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -62,7 +63,8 @@ public class H5Ex_T_OpaqueAttribute {
dataspace_id = H5.H5Screate(HDF5Constants.H5S_SCALAR);
if (dataspace_id >= 0) {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
@@ -96,7 +98,7 @@ public class H5Ex_T_OpaqueAttribute {
try {
if ((dataset_id >= 0) && (datatype_id >= 0) && (dataspace_id >= 0))
attribute_id = H5.H5Acreate(dataset_id, ATTRIBUTENAME, datatype_id, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -153,17 +155,17 @@ public class H5Ex_T_OpaqueAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long datatype_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long type_len = -1;
- long[] dims = { DIM0 };
+ long type_len = -1;
+ long[] dims = {DIM0};
byte[] dset_data;
String tag_name = null;
@@ -187,7 +189,7 @@ public class H5Ex_T_OpaqueAttribute {
try {
if (dataset_id >= 0)
attribute_id = H5.H5Aopen_by_name(dataset_id, ".", ATTRIBUTENAME, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -224,7 +226,7 @@ public class H5Ex_T_OpaqueAttribute {
}
// Allocate buffer.
- dset_data = new byte[(int) (dims[0] * type_len)];
+ dset_data = new byte[(int)(dims[0] * type_len)];
// Read data.
try {
@@ -240,7 +242,7 @@ public class H5Ex_T_OpaqueAttribute {
for (int indx = 0; indx < dims[0]; indx++) {
System.out.print(ATTRIBUTENAME + "[" + indx + "]: ");
for (int jndx = 0; jndx < type_len; jndx++) {
- char temp = (char) dset_data[jndx + indx * (int)type_len];
+ char temp = (char)dset_data[jndx + indx * (int)type_len];
System.out.print(temp);
}
System.out.println("");
@@ -289,10 +291,10 @@ public class H5Ex_T_OpaqueAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_OpaqueAttribute.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -300,5 +302,4 @@ public class H5Ex_T_OpaqueAttribute {
// data using malloc().
H5Ex_T_OpaqueAttribute.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_String.java b/java/examples/datatypes/H5Ex_T_String.java
index e497bd8..a69a70b 100644
--- a/java/examples/datatypes/H5Ex_T_String.java
+++ b/java/examples/datatypes/H5Ex_T_String.java
@@ -24,27 +24,28 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_String {
- private static String FILENAME = "H5Ex_T_String.h5";
+ private static String FILENAME = "H5Ex_T_String.h5";
private static String DATASETNAME = "DS1";
- private static final int DIM0 = 4;
- private static final int SDIM = 8;
- private static final int RANK = 1;
-
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long memtype_id = HDF5Constants.H5I_INVALID_HID;
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
- byte[][] dset_data = new byte[DIM0][SDIM];
- StringBuffer[] str_data = { new StringBuffer("Parting"), new StringBuffer("is such"),
- new StringBuffer("sweet"), new StringBuffer("sorrow.") };
+ private static final int DIM0 = 4;
+ private static final int SDIM = 8;
+ private static final int RANK = 1;
+
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long memtype_id = HDF5Constants.H5I_INVALID_HID;
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
+ byte[][] dset_data = new byte[DIM0][SDIM];
+ StringBuffer[] str_data = {new StringBuffer("Parting"), new StringBuffer("is such"),
+ new StringBuffer("sweet"), new StringBuffer("sorrow.")};
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -82,8 +83,9 @@ public class H5Ex_T_String {
// Create the dataset and write the string data to it.
try {
if ((file_id >= 0) && (filetype_id >= 0) && (dataspace_id >= 0))
- dataset_id = H5.H5Dcreate(file_id, DATASETNAME, filetype_id, dataspace_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id =
+ H5.H5Dcreate(file_id, DATASETNAME, filetype_id, dataspace_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -94,14 +96,14 @@ public class H5Ex_T_String {
for (int indx = 0; indx < DIM0; indx++) {
for (int jndx = 0; jndx < SDIM; jndx++) {
if (jndx < str_data[indx].length())
- dset_data[indx][jndx] = (byte) str_data[indx].charAt(jndx);
+ dset_data[indx][jndx] = (byte)str_data[indx].charAt(jndx);
else
dset_data[indx][jndx] = 0;
}
}
if ((dataset_id >= 0) && (memtype_id >= 0))
H5.H5Dwrite(dataset_id, memtype_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -151,17 +153,17 @@ public class H5Ex_T_String {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- long memtype_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long sdim = 0;
- long[] dims = { DIM0 };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long sdim = 0;
+ long[] dims = {DIM0};
byte[][] dset_data;
StringBuffer[] str_data;
@@ -213,8 +215,8 @@ public class H5Ex_T_String {
}
// Allocate space for data.
- dset_data = new byte[(int) dims[0]][(int)sdim];
- str_data = new StringBuffer[(int) dims[0]];
+ dset_data = new byte[(int)dims[0]][(int)sdim];
+ str_data = new StringBuffer[(int)dims[0]];
// Create the memory datatype.
try {
@@ -230,9 +232,9 @@ public class H5Ex_T_String {
try {
if ((dataset_id >= 0) && (memtype_id >= 0))
H5.H5Dread(dataset_id, memtype_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
byte[] tempbuf = new byte[(int)sdim];
- for (int indx = 0; indx < (int) dims[0]; indx++) {
+ for (int indx = 0; indx < (int)dims[0]; indx++) {
for (int jndx = 0; jndx < sdim; jndx++) {
tempbuf[jndx] = dset_data[indx][jndx];
}
@@ -293,10 +295,10 @@ public class H5Ex_T_String {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_String.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -304,5 +306,4 @@ public class H5Ex_T_String {
// data using malloc().
H5Ex_T_String.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_StringAttribute.java b/java/examples/datatypes/H5Ex_T_StringAttribute.java
index 700f6a9..46c1038 100644
--- a/java/examples/datatypes/H5Ex_T_StringAttribute.java
+++ b/java/examples/datatypes/H5Ex_T_StringAttribute.java
@@ -24,29 +24,30 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_T_StringAttribute {
- private static String FILENAME = "H5Ex_T_StringAttribute.h5";
- private static String DATASETNAME = "DS1";
+ private static String FILENAME = "H5Ex_T_StringAttribute.h5";
+ private static String DATASETNAME = "DS1";
private static String ATTRIBUTENAME = "A1";
- private static final int DIM0 = 4;
- private static final int SDIM = 8;
- private static final int RANK = 1;
-
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long memtype_id = HDF5Constants.H5I_INVALID_HID;
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM0 };
- byte[][] dset_data = new byte[DIM0][SDIM];
- StringBuffer[] str_data = { new StringBuffer("Parting"), new StringBuffer("is such"),
- new StringBuffer("sweet"), new StringBuffer("sorrow.") };
+ private static final int DIM0 = 4;
+ private static final int SDIM = 8;
+ private static final int RANK = 1;
+
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long memtype_id = HDF5Constants.H5I_INVALID_HID;
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long attribute_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM0};
+ byte[][] dset_data = new byte[DIM0][SDIM];
+ StringBuffer[] str_data = {new StringBuffer("Parting"), new StringBuffer("is such"),
+ new StringBuffer("sweet"), new StringBuffer("sorrow.")};
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -77,7 +78,8 @@ public class H5Ex_T_StringAttribute {
dataspace_id = H5.H5Screate(HDF5Constants.H5S_SCALAR);
if (dataspace_id >= 0) {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
@@ -99,7 +101,7 @@ public class H5Ex_T_StringAttribute {
try {
if ((dataset_id >= 0) && (dataspace_id >= 0) && (filetype_id >= 0))
attribute_id = H5.H5Acreate(dataset_id, ATTRIBUTENAME, filetype_id, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -110,7 +112,7 @@ public class H5Ex_T_StringAttribute {
for (int indx = 0; indx < DIM0; indx++) {
for (int jndx = 0; jndx < SDIM; jndx++) {
if (jndx < str_data[indx].length())
- dset_data[indx][jndx] = (byte) str_data[indx].charAt(jndx);
+ dset_data[indx][jndx] = (byte)str_data[indx].charAt(jndx);
else
dset_data[indx][jndx] = 0;
}
@@ -174,18 +176,18 @@ public class H5Ex_T_StringAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- private static void ReadDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- long memtype_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long sdim = 0;
- long[] dims = { DIM0 };
+ long sdim = 0;
+ long[] dims = {DIM0};
byte[][] dset_data;
StringBuffer[] str_data;
@@ -209,7 +211,7 @@ public class H5Ex_T_StringAttribute {
try {
if (dataset_id >= 0)
attribute_id = H5.H5Aopen_by_name(dataset_id, ".", ATTRIBUTENAME, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -246,8 +248,8 @@ public class H5Ex_T_StringAttribute {
}
// Allocate space for data.
- dset_data = new byte[(int) dims[0]][(int)sdim];
- str_data = new StringBuffer[(int) dims[0]];
+ dset_data = new byte[(int)dims[0]][(int)sdim];
+ str_data = new StringBuffer[(int)dims[0]];
// Create the memory datatype.
try {
@@ -264,7 +266,7 @@ public class H5Ex_T_StringAttribute {
if ((attribute_id >= 0) && (memtype_id >= 0))
H5.H5Aread(attribute_id, memtype_id, dset_data);
byte[] tempbuf = new byte[(int)sdim];
- for (int indx = 0; indx < (int) dims[0]; indx++) {
+ for (int indx = 0; indx < (int)dims[0]; indx++) {
for (int jndx = 0; jndx < sdim; jndx++) {
tempbuf[jndx] = dset_data[indx][jndx];
}
@@ -333,10 +335,10 @@ public class H5Ex_T_StringAttribute {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_StringAttribute.CreateDataset();
// Now we begin the read section of this example. Here we assume
// the dataset and array have the same name and rank, but can have
@@ -344,5 +346,4 @@ public class H5Ex_T_StringAttribute {
// data using malloc().
H5Ex_T_StringAttribute.ReadDataset();
}
-
}
diff --git a/java/examples/datatypes/H5Ex_T_VLString.java b/java/examples/datatypes/H5Ex_T_VLString.java
index 8a29e60..1d4c2c4 100644
--- a/java/examples/datatypes/H5Ex_T_VLString.java
+++ b/java/examples/datatypes/H5Ex_T_VLString.java
@@ -19,24 +19,24 @@ package examples.datatypes;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
-public class H5Ex_T_VLString
-{
- private static String FILENAME = "H5Ex_T_VLString.h5";
+public class H5Ex_T_VLString {
+ private static String FILENAME = "H5Ex_T_VLString.h5";
private static String DATASETNAME = "DS1";
- private static void createDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long type_id = HDF5Constants.H5I_INVALID_HID;
+ private static void createDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long type_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- int rank = 1;
- String[] str_data = { "Parting", "is such", "sweet", "sorrow." };
- long[] dims = { str_data.length };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ int rank = 1;
+ String[] str_data = {"Parting", "is such", "sweet", "sorrow."};
+ long[] dims = {str_data.length};
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -62,8 +62,9 @@ public class H5Ex_T_VLString
// Create the dataset and write the string data to it.
try {
if ((file_id >= 0) && (type_id >= 0) && (dataspace_id >= 0)) {
- dataset_id = H5.H5Dcreate(file_id, DATASETNAME, type_id, dataspace_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id =
+ H5.H5Dcreate(file_id, DATASETNAME, type_id, dataspace_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
}
catch (Exception e) {
@@ -74,7 +75,7 @@ public class H5Ex_T_VLString
try {
if (dataset_id >= 0)
H5.H5Dwrite_VLStrings(dataset_id, type_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, str_data);
+ HDF5Constants.H5P_DEFAULT, str_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -91,11 +92,12 @@ public class H5Ex_T_VLString
}
}
- private static void readDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long type_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- String[] str_data = { "", "", "", "" };
+ private static void readDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long type_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ String[] str_data = {"", "", "", ""};
try {
file_id = H5.H5Fopen(FILENAME, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
@@ -106,9 +108,9 @@ public class H5Ex_T_VLString
try {
dataset_id = H5.H5Dopen(file_id, DATASETNAME, HDF5Constants.H5P_DEFAULT);
- type_id = H5.H5Dget_type(dataset_id);
- H5.H5Dread_VLStrings(dataset_id, type_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT,
- str_data);
+ type_id = H5.H5Dget_type(dataset_id);
+ H5.H5Dread_VLStrings(dataset_id, type_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, str_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -127,9 +129,9 @@ public class H5Ex_T_VLString
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5Ex_T_VLString.createDataset();
H5Ex_T_VLString.readDataset();
}
-
}
diff --git a/java/examples/groups/CMakeLists.txt b/java/examples/groups/CMakeLists.txt
index 6483f91..9f20abf 100644
--- a/java/examples/groups/CMakeLists.txt
+++ b/java/examples/groups/CMakeLists.txt
@@ -36,6 +36,13 @@ foreach (example ${HDF_JAVA_EXAMPLES})
# install_jar (${example} ${HJAVA_INSTALL_DATA_DIR}/examples examples)
get_target_property (${example}_CLASSPATH ${example} CLASSDIR)
add_dependencies (${example} ${HDF5_JAVA_HDF5_LIB_TARGET})
+
+ #-----------------------------------------------------------------------------
+ # Add Target to clang-format
+ #-----------------------------------------------------------------------------
+ if (HDF5_ENABLE_FORMATTERS)
+ clang_format (HDF5_JAVA_${example}_SRC_FORMAT ${example}.java)
+ endif ()
endforeach ()
set (CMAKE_JAVA_INCLUDE_PATH "${HDF5_JAVA_JARS};${HDF5_JAVA_LOGGING_JAR};${HDF5_JAVA_LOGGING_NOP_JAR}")
diff --git a/java/examples/groups/H5Ex_G_Compact.java b/java/examples/groups/H5Ex_G_Compact.java
index 313c9c7..2c6535a 100644
--- a/java/examples/groups/H5Ex_G_Compact.java
+++ b/java/examples/groups/H5Ex_G_Compact.java
@@ -16,14 +16,14 @@
package examples.groups;
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.structs.H5G_info_t;
-
import java.util.EnumSet;
import java.util.HashMap;
import java.util.Map;
+import hdf.hdf5lib.H5;
+import hdf.hdf5lib.HDF5Constants;
+import hdf.hdf5lib.structs.H5G_info_t;
+
public class H5Ex_G_Compact {
private static final String FILE1 = "H5Ex_G_Compact1.h5";
@@ -38,44 +38,42 @@ public class H5Ex_G_Compact {
private static final Map<Integer, H5G_storage> lookup = new HashMap<Integer, H5G_storage>();
- static {
+ static
+ {
for (H5G_storage s : EnumSet.allOf(H5G_storage.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5G_storage(int layout_type) {
- this.code = layout_type;
- }
+ H5G_storage(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5G_storage get(int code) {
- return lookup.get(code);
- }
+ public static H5G_storage get(int code) { return lookup.get(code); }
}
- public static void CreateGroup() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ public static void CreateGroup()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
- long fapl_id = HDF5Constants.H5I_INVALID_HID;
+ long fapl_id = HDF5Constants.H5I_INVALID_HID;
H5G_info_t ginfo;
long size;
// Create file 1. This file will use original format groups.
try {
- file_id = H5.H5Fcreate (FILE1, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ file_id = H5.H5Fcreate(FILE1, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
}
// Create a group in the file1.
try {
- if(file_id >= 0)
- group_id = H5.H5Gcreate(file_id, GROUP, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ if (file_id >= 0)
+ group_id = H5.H5Gcreate(file_id, GROUP, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -83,7 +81,7 @@ public class H5Ex_G_Compact {
// Obtain the group info and print the group storage type.
try {
- if(group_id >= 0) {
+ if (group_id >= 0) {
ginfo = H5.H5Gget_info(group_id);
System.out.print("Group storage type for " + FILE1 + " is: ");
switch (H5G_storage.get(ginfo.storage_type)) {
@@ -160,7 +158,8 @@ public class H5Ex_G_Compact {
try {
fapl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS);
if (fapl_id >= 0)
- H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST, HDF5Constants.H5F_LIBVER_LATEST);
+ H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST,
+ HDF5Constants.H5F_LIBVER_LATEST);
}
catch (Exception e) {
e.printStackTrace();
@@ -175,8 +174,9 @@ public class H5Ex_G_Compact {
}
// Create group in file2.
try {
- if(file_id >= 0)
- group_id = H5.H5Gcreate(file_id, GROUP, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ if (file_id >= 0)
+ group_id = H5.H5Gcreate(file_id, GROUP, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -257,7 +257,5 @@ public class H5Ex_G_Compact {
}
}
- public static void main(String[] args) {
- H5Ex_G_Compact.CreateGroup();
- }
+ public static void main(String[] args) { H5Ex_G_Compact.CreateGroup(); }
}
diff --git a/java/examples/groups/H5Ex_G_Corder.java b/java/examples/groups/H5Ex_G_Corder.java
index 4fa5aa2..86a790d 100644
--- a/java/examples/groups/H5Ex_G_Corder.java
+++ b/java/examples/groups/H5Ex_G_Corder.java
@@ -23,11 +23,12 @@ import hdf.hdf5lib.structs.H5G_info_t;
public class H5Ex_G_Corder {
private static String FILE = "H5Ex_G_Corder.h5";
- private static void CreateGroup() throws Exception {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long group_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateGroup() throws Exception
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long group_id = HDF5Constants.H5I_INVALID_HID;
long subgroup_id = HDF5Constants.H5I_INVALID_HID;
- long gcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long gcpl_id = HDF5Constants.H5I_INVALID_HID;
int status;
H5G_info_t ginfo;
int i;
@@ -36,35 +37,35 @@ public class H5Ex_G_Corder {
try {
// Create a new file using default properties.
file_id = H5.H5Fcreate(FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
// Create group creation property list and enable link creation order tracking.
gcpl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE);
- status = H5.H5Pset_link_creation_order(gcpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED
- + HDF5Constants.H5P_CRT_ORDER_INDEXED);
+ status = H5.H5Pset_link_creation_order(gcpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED +
+ HDF5Constants.H5P_CRT_ORDER_INDEXED);
// Create primary group using the property list.
if (status >= 0)
group_id = H5.H5Gcreate(file_id, "index_group", HDF5Constants.H5P_DEFAULT, gcpl_id,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
try {
/*
- * Create subgroups in the primary group. These will be tracked by creation order. Note that these
- * groups do not have to have the creation order tracking property set.
+ * Create subgroups in the primary group. These will be tracked by creation order. Note that
+ * these groups do not have to have the creation order tracking property set.
*/
- subgroup_id = H5.H5Gcreate(group_id, "H", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
- status = H5.H5Gclose(subgroup_id);
- subgroup_id = H5.H5Gcreate(group_id, "D", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
- status = H5.H5Gclose(subgroup_id);
- subgroup_id = H5.H5Gcreate(group_id, "F", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
- status = H5.H5Gclose(subgroup_id);
- subgroup_id = H5.H5Gcreate(group_id, "5", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
- status = H5.H5Gclose(subgroup_id);
+ subgroup_id = H5.H5Gcreate(group_id, "H", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ status = H5.H5Gclose(subgroup_id);
+ subgroup_id = H5.H5Gcreate(group_id, "D", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ status = H5.H5Gclose(subgroup_id);
+ subgroup_id = H5.H5Gcreate(group_id, "F", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ status = H5.H5Gclose(subgroup_id);
+ subgroup_id = H5.H5Gcreate(group_id, "5", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ status = H5.H5Gclose(subgroup_id);
// Get group info.
ginfo = H5.H5Gget_info(group_id);
@@ -73,8 +74,8 @@ public class H5Ex_G_Corder {
System.out.println("Traversing group using alphabetical indices:");
for (i = 0; i < ginfo.nlinks; i++) {
// Retrieve the name of the ith link in a group
- name = H5.H5Lget_name_by_idx(group_id, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC,
- i, HDF5Constants.H5P_DEFAULT);
+ name = H5.H5Lget_name_by_idx(group_id, ".", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, i, HDF5Constants.H5P_DEFAULT);
System.out.println("Index " + i + ": " + name);
}
@@ -83,10 +84,9 @@ public class H5Ex_G_Corder {
for (i = 0; i < ginfo.nlinks; i++) {
// Retrieve the name of the ith link in a group
name = H5.H5Lget_name_by_idx(group_id, ".", HDF5Constants.H5_INDEX_CRT_ORDER,
- HDF5Constants.H5_ITER_INC, i, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5_ITER_INC, i, HDF5Constants.H5P_DEFAULT);
System.out.println("Index " + i + ": " + name);
}
-
}
catch (Exception e) {
e.printStackTrace();
@@ -106,7 +106,8 @@ public class H5Ex_G_Corder {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
try {
H5Ex_G_Corder.CreateGroup();
}
@@ -114,5 +115,4 @@ public class H5Ex_G_Corder {
ex.printStackTrace();
}
}
-
}
diff --git a/java/examples/groups/H5Ex_G_Create.java b/java/examples/groups/H5Ex_G_Create.java
index 9304538..51804b9 100644
--- a/java/examples/groups/H5Ex_G_Create.java
+++ b/java/examples/groups/H5Ex_G_Create.java
@@ -20,17 +20,18 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5Ex_G_Create {
- private static String FILENAME = "H5Ex_G_Create.h5";
+ private static String FILENAME = "H5Ex_G_Create.h5";
private static String GROUPNAME = "G1";
- private static void CreateGroup() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateGroup()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -39,8 +40,8 @@ public class H5Ex_G_Create {
// Create a group in the file.
try {
if (file_id >= 0)
- group_id = H5.H5Gcreate(file_id, "/" + GROUPNAME, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ group_id = H5.H5Gcreate(file_id, "/" + GROUPNAME, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -81,11 +82,7 @@ public class H5Ex_G_Create {
catch (Exception e) {
e.printStackTrace();
}
-
- }
-
- public static void main(String[] args) {
- H5Ex_G_Create.CreateGroup();
}
+ public static void main(String[] args) { H5Ex_G_Create.CreateGroup(); }
}
diff --git a/java/examples/groups/H5Ex_G_Intermediate.java b/java/examples/groups/H5Ex_G_Intermediate.java
index ad0290c..e638fd0 100644
--- a/java/examples/groups/H5Ex_G_Intermediate.java
+++ b/java/examples/groups/H5Ex_G_Intermediate.java
@@ -16,47 +16,49 @@
************************************************************/
package examples.groups;
+import java.util.ArrayList;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.callbacks.H5O_iterate_t;
import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t;
+import hdf.hdf5lib.callbacks.H5O_iterate_t;
import hdf.hdf5lib.structs.H5O_info_t;
-import java.util.ArrayList;
-
public class H5Ex_G_Intermediate {
private static String FILE = "H5Ex_G_Intermediate.h5";
- private void CreateGroup() throws Exception {
+ private void CreateGroup() throws Exception
+ {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
- long gcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long gcpl_id = HDF5Constants.H5I_INVALID_HID;
try {
// Create a new file_id using the default properties.
file_id = H5.H5Fcreate(FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
// Create group_id creation property list and set it to allow creation of intermediate group_ids.
gcpl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_CREATE);
H5.H5Pset_create_intermediate_group(gcpl_id, true);
/*
- * Create the group_id /G1/G2/G3. Note that /G1 and /G1/G2 do not exist yet. This call would cause an error
- * if we did not use the previously created property list.
+ * Create the group_id /G1/G2/G3. Note that /G1 and /G1/G2 do not exist yet. This call would cause
+ * an error if we did not use the previously created property list.
*/
- group_id = H5
- .H5Gcreate(file_id, "/G1/G2/G3", gcpl_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ group_id = H5.H5Gcreate(file_id, "/G1/G2/G3", gcpl_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
// Print all the objects in the file_ids to show that intermediate group_ids have been created.
System.out.println("Objects in the file_id:");
// H5O_iterate_opdata_t iter_data = null;
H5O_iterate_opdata_t iter_data = new H5O_iter_data();
- H5O_iterate_t iter_cb = new H5O_iter_callback();
+ H5O_iterate_t iter_cb = new H5O_iter_callback();
- H5.H5Ovisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb, iter_data);
+ H5.H5Ovisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb,
+ iter_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -72,7 +74,8 @@ public class H5Ex_G_Intermediate {
}
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
try {
(new H5Ex_G_Intermediate()).CreateGroup();
}
@@ -83,9 +86,10 @@ public class H5Ex_G_Intermediate {
private class idata {
public String link_name = null;
- public int link_type = -1;
+ public int link_type = -1;
- idata(String name, int type) {
+ idata(String name, int type)
+ {
this.link_name = name;
this.link_type = type;
}
@@ -96,9 +100,10 @@ public class H5Ex_G_Intermediate {
}
private class H5O_iter_callback implements H5O_iterate_t {
- public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data)
+ {
idata id = new idata(name, info.type);
- ((H5O_iter_data) op_data).iterdata.add(id);
+ ((H5O_iter_data)op_data).iterdata.add(id);
System.out.print("/"); /* Print root group in object path */
@@ -118,5 +123,4 @@ public class H5Ex_G_Intermediate {
return 0;
}
}
-
}
diff --git a/java/examples/groups/H5Ex_G_Iterate.java b/java/examples/groups/H5Ex_G_Iterate.java
index 6caecac..24cbb0a 100644
--- a/java/examples/groups/H5Ex_G_Iterate.java
+++ b/java/examples/groups/H5Ex_G_Iterate.java
@@ -16,47 +16,43 @@
************************************************************/
package examples.groups;
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.structs.H5O_token_t;
-
import java.util.EnumSet;
import java.util.HashMap;
import java.util.Map;
+import hdf.hdf5lib.H5;
+import hdf.hdf5lib.HDF5Constants;
+import hdf.hdf5lib.structs.H5O_token_t;
+
public class H5Ex_G_Iterate {
- private static String FILENAME = "groups/h5ex_g_iterate.h5";
+ private static String FILENAME = "groups/h5ex_g_iterate.h5";
private static String DATASETNAME = "/";
enum H5O_type {
- H5O_TYPE_UNKNOWN(-1), // Unknown object type
- H5O_TYPE_GROUP(0), // Object is a group
- H5O_TYPE_DATASET(1), // Object is a dataset
+ H5O_TYPE_UNKNOWN(-1), // Unknown object type
+ H5O_TYPE_GROUP(0), // Object is a group
+ H5O_TYPE_DATASET(1), // Object is a dataset
H5O_TYPE_NAMED_DATATYPE(2), // Object is a named data type
- H5O_TYPE_NTYPES(3); // Number of different object types
+ H5O_TYPE_NTYPES(3); // Number of different object types
private static final Map<Integer, H5O_type> lookup = new HashMap<Integer, H5O_type>();
- static {
+ static
+ {
for (H5O_type s : EnumSet.allOf(H5O_type.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5O_type(int layout_type) {
- this.code = layout_type;
- }
+ H5O_type(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5O_type get(int code) {
- return lookup.get(code);
- }
+ public static H5O_type get(int code) { return lookup.get(code); }
}
- private static void do_iterate() {
+ private static void do_iterate()
+ {
long file_id = HDF5Constants.H5I_INVALID_HID;
// Open a file using default properties.
@@ -71,12 +67,13 @@ public class H5Ex_G_Iterate {
System.out.println("Objects in root group:");
try {
if (file_id >= 0) {
- int count = (int) H5.H5Gn_members(file_id, DATASETNAME);
- String[] oname = new String[count];
- int[] otype = new int[count];
- int[] ltype = new int[count];
+ int count = (int)H5.H5Gn_members(file_id, DATASETNAME);
+ String[] oname = new String[count];
+ int[] otype = new int[count];
+ int[] ltype = new int[count];
H5O_token_t[] otokens = new H5O_token_t[count];
- H5.H5Gget_obj_info_all(file_id, DATASETNAME, oname, otype, ltype, otokens, HDF5Constants.H5_INDEX_NAME);
+ H5.H5Gget_obj_info_all(file_id, DATASETNAME, oname, otype, ltype, otokens,
+ HDF5Constants.H5_INDEX_NAME);
// Get type of the object and display its name and type.
for (int indx = 0; indx < otype.length; indx++) {
@@ -110,8 +107,5 @@ public class H5Ex_G_Iterate {
}
}
- public static void main(String[] args) {
- H5Ex_G_Iterate.do_iterate();
- }
-
+ public static void main(String[] args) { H5Ex_G_Iterate.do_iterate(); }
}
diff --git a/java/examples/groups/H5Ex_G_Phase.java b/java/examples/groups/H5Ex_G_Phase.java
index 67a2f53..7a3fba3 100644
--- a/java/examples/groups/H5Ex_G_Phase.java
+++ b/java/examples/groups/H5Ex_G_Phase.java
@@ -16,19 +16,19 @@
************************************************************/
package examples.groups;
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.structs.H5G_info_t;
-
import java.util.EnumSet;
import java.util.HashMap;
import java.util.Map;
+import hdf.hdf5lib.H5;
+import hdf.hdf5lib.HDF5Constants;
+import hdf.hdf5lib.structs.H5G_info_t;
+
public class H5Ex_G_Phase {
- private static String FILE = "H5Ex_G_Phase.h5";
- private static int MAX_GROUPS = 7;
+ private static String FILE = "H5Ex_G_Phase.h5";
+ private static int MAX_GROUPS = 7;
private static int MAX_COMPACT = 5;
- private static int MIN_DENSE = 3;
+ private static int MIN_DENSE = 3;
enum H5G_storage {
H5G_STORAGE_TYPE_UNKNOWN(-1),
@@ -38,42 +38,39 @@ public class H5Ex_G_Phase {
private static final Map<Integer, H5G_storage> lookup = new HashMap<Integer, H5G_storage>();
- static {
+ static
+ {
for (H5G_storage s : EnumSet.allOf(H5G_storage.class))
lookup.put(s.getCode(), s);
}
private int code;
- H5G_storage(int layout_type) {
- this.code = layout_type;
- }
+ H5G_storage(int layout_type) { this.code = layout_type; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
- public static H5G_storage get(int code) {
- return lookup.get(code);
- }
+ public static H5G_storage get(int code) { return lookup.get(code); }
}
- private static void CreateGroup() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long group_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateGroup()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long group_id = HDF5Constants.H5I_INVALID_HID;
long subgroup_id = HDF5Constants.H5I_INVALID_HID;
- long fapl_id = HDF5Constants.H5I_INVALID_HID;
- long gcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long fapl_id = HDF5Constants.H5I_INVALID_HID;
+ long gcpl_id = HDF5Constants.H5I_INVALID_HID;
H5G_info_t ginfo;
String name = "G0"; // Name of subgroup_id
int i;
- // Set file access property list to allow the latest file format.This will allow the library to create new
- // format groups.
+ // Set file access property list to allow the latest file format.This will allow the library to create
+ // new format groups.
try {
fapl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS);
if (fapl_id >= 0)
- H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST, HDF5Constants.H5F_LIBVER_LATEST);
+ H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST,
+ HDF5Constants.H5F_LIBVER_LATEST);
}
catch (Exception e) {
e.printStackTrace();
@@ -101,21 +98,23 @@ public class H5Ex_G_Phase {
// Create primary group.
try {
if ((file_id >= 0) && (gcpl_id >= 0))
- group_id = H5.H5Gcreate(file_id, name, HDF5Constants.H5P_DEFAULT, gcpl_id, HDF5Constants.H5P_DEFAULT);
+ group_id = H5.H5Gcreate(file_id, name, HDF5Constants.H5P_DEFAULT, gcpl_id,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
}
- // Add subgroups to "group" one at a time, print the storage type for "group" after each subgroup is created.
+ // Add subgroups to "group" one at a time, print the storage type for "group" after each subgroup is
+ // created.
for (i = 1; i <= MAX_GROUPS; i++) {
// Define the subgroup name and create the subgroup.
- char append = (char) (((char) i) + '0');
- name = name + append; /* G1, G2, G3 etc. */
+ char append = (char)(((char)i) + '0');
+ name = name + append; /* G1, G2, G3 etc. */
try {
if (group_id >= 0) {
- subgroup_id = H5.H5Gcreate(group_id, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ subgroup_id = H5.H5Gcreate(group_id, name, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Gclose(subgroup_id);
}
}
@@ -127,7 +126,8 @@ public class H5Ex_G_Phase {
try {
if (group_id >= 0) {
ginfo = H5.H5Gget_info(group_id);
- System.out.print(ginfo.nlinks + " Group" + (ginfo.nlinks == 1 ? " " : "s") + ": Storage type is ");
+ System.out.print(ginfo.nlinks + " Group" + (ginfo.nlinks == 1 ? " " : "s") +
+ ": Storage type is ");
switch (H5G_storage.get(ginfo.storage_type)) {
case H5G_STORAGE_TYPE_COMPACT:
System.out.println("H5G_STORAGE_TYPE_COMPACT"); // New compact format
@@ -169,7 +169,8 @@ public class H5Ex_G_Phase {
try {
if (group_id >= 0) {
ginfo = H5.H5Gget_info(group_id);
- System.out.print(ginfo.nlinks + " Group" + (ginfo.nlinks == 1 ? " " : "s") + ": Storage type is ");
+ System.out.print(ginfo.nlinks + " Group" + (ginfo.nlinks == 1 ? " " : "s") +
+ ": Storage type is ");
switch (H5G_storage.get(ginfo.storage_type)) {
case H5G_STORAGE_TYPE_COMPACT:
System.out.println("H5G_STORAGE_TYPE_COMPACT"); // New compact format
@@ -228,11 +229,7 @@ public class H5Ex_G_Phase {
catch (Exception e) {
e.printStackTrace();
}
-
- }
-
- public static void main(String[] args) {
- H5Ex_G_Phase.CreateGroup();
}
+ public static void main(String[] args) { H5Ex_G_Phase.CreateGroup(); }
}
diff --git a/java/examples/groups/H5Ex_G_Traverse.java b/java/examples/groups/H5Ex_G_Traverse.java
index c5b6373..cd60f6b 100644
--- a/java/examples/groups/H5Ex_G_Traverse.java
+++ b/java/examples/groups/H5Ex_G_Traverse.java
@@ -24,10 +24,11 @@ package examples.groups;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.callbacks.H5L_iterate_t;
import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t;
+import hdf.hdf5lib.callbacks.H5L_iterate_t;
import hdf.hdf5lib.structs.H5L_info_t;
import hdf.hdf5lib.structs.H5O_info_t;
+
import examples.groups.H5Ex_G_Iterate.H5O_type;
class opdata implements H5L_iterate_opdata_t {
@@ -38,10 +39,11 @@ class opdata implements H5L_iterate_opdata_t {
public class H5Ex_G_Traverse {
- private static String FILE = "h5ex_g_traverse.h5";
+ private static String FILE = "h5ex_g_traverse.h5";
public static H5L_iterate_t iter_cb = new H5L_iter_callbackT();
- private static void OpenGroup() {
+ private static void OpenGroup()
+ {
long file_id = HDF5Constants.H5I_INVALID_HID;
H5O_info_t infobuf;
opdata od = new opdata();
@@ -50,9 +52,9 @@ public class H5Ex_G_Traverse {
try {
file_id = H5.H5Fopen(FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
if (file_id >= 0) {
- infobuf = H5.H5Oget_info(file_id);
- od.recurs = 0;
- od.prev = null;
+ infobuf = H5.H5Oget_info(file_id);
+ od.recurs = 0;
+ od.prev = null;
od.obj_token = infobuf.token;
}
}
@@ -64,7 +66,8 @@ public class H5Ex_G_Traverse {
try {
System.out.println("/ {");
// H5L_iterate_t iter_cb = new H5L_iter_callbackT();
- H5.H5Literate(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, 0L, iter_cb, od);
+ H5.H5Literate(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, 0L, iter_cb,
+ od);
System.out.println("}");
}
catch (Exception e) {
@@ -81,18 +84,17 @@ public class H5Ex_G_Traverse {
}
}
- public static void main(String[] args) {
- H5Ex_G_Traverse.OpenGroup();
- }
+ public static void main(String[] args) { H5Ex_G_Traverse.OpenGroup(); }
}
class H5L_iter_callbackT implements H5L_iterate_t {
- public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data)
+ {
H5O_info_t infobuf;
int return_val = 0;
- opdata od = (opdata) op_data; // Type conversion
- int spaces = 2 * (od.recurs + 1); // Number of white spaces to prepend to output.
+ opdata od = (opdata)op_data; // Type conversion
+ int spaces = 2 * (od.recurs + 1); // Number of white spaces to prepend to output.
// Get type of the object and display its name and type.
// The name of the object is passed to this function by the Library.
@@ -123,13 +125,14 @@ class H5L_iter_callbackT implements H5L_iterate_t {
// recursive iteration on the discovered
// group. The new opdata is given a pointer to the
// current one.
- opdata nextod = new opdata();
- nextod.recurs = od.recurs + 1;
- nextod.prev = od;
- nextod.obj_token = infobuf.token;
+ opdata nextod = new opdata();
+ nextod.recurs = od.recurs + 1;
+ nextod.prev = od;
+ nextod.obj_token = infobuf.token;
H5L_iterate_t iter_cb2 = new H5L_iter_callbackT();
- return_val = H5.H5Literate_by_name(group, name, HDF5Constants.H5_INDEX_NAME,
- HDF5Constants.H5_ITER_NATIVE, 0L, iter_cb2, nextod, HDF5Constants.H5P_DEFAULT);
+ return_val = H5.H5Literate_by_name(group, name, HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_NATIVE, 0L, iter_cb2, nextod,
+ HDF5Constants.H5P_DEFAULT);
}
for (int i = 0; i < spaces; i++)
System.out.print(" ");
@@ -152,7 +155,8 @@ class H5L_iter_callbackT implements H5L_iterate_t {
return return_val;
}
- public boolean group_check(opdata od, H5O_token_t target_token) {
+ public boolean group_check(opdata od, H5O_token_t target_token)
+ {
if (od.obj_token.equals(target_token))
return true; // Object tokens match
else if (od.recurs == 0)
@@ -160,5 +164,4 @@ class H5L_iter_callbackT implements H5L_iterate_t {
else
return group_check(od.prev, target_token); // Recursively examine the next node
}
-
}
diff --git a/java/examples/groups/H5Ex_G_Visit.java b/java/examples/groups/H5Ex_G_Visit.java
index 790be80..d14ded6 100644
--- a/java/examples/groups/H5Ex_G_Visit.java
+++ b/java/examples/groups/H5Ex_G_Visit.java
@@ -20,22 +20,23 @@
************************************************************/
package examples.groups;
+import java.util.ArrayList;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.callbacks.H5L_iterate_t;
import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t;
-import hdf.hdf5lib.callbacks.H5O_iterate_t;
+import hdf.hdf5lib.callbacks.H5L_iterate_t;
import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t;
+import hdf.hdf5lib.callbacks.H5O_iterate_t;
import hdf.hdf5lib.structs.H5L_info_t;
import hdf.hdf5lib.structs.H5O_info_t;
-import java.util.ArrayList;
-
public class H5Ex_G_Visit {
private static String FILE = "groups/h5ex_g_visit.h5";
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
try {
(new H5Ex_G_Visit()).VisitGroup();
}
@@ -44,7 +45,8 @@ public class H5Ex_G_Visit {
}
}
- private void VisitGroup() throws Exception {
+ private void VisitGroup() throws Exception
+ {
long file_id = HDF5Constants.H5I_INVALID_HID;
@@ -55,15 +57,16 @@ public class H5Ex_G_Visit {
// Begin iteration using H5Ovisit
System.out.println("Objects in the file:");
H5O_iterate_opdata_t iter_data = new H5O_iter_data();
- H5O_iterate_t iter_cb = new H5O_iter_callback();
- H5.H5Ovisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb, iter_data);
+ H5O_iterate_t iter_cb = new H5O_iter_callback();
+ H5.H5Ovisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb,
+ iter_data);
System.out.println();
// Repeat the same process using H5Lvisit
H5L_iterate_opdata_t iter_data2 = new H5L_iter_data();
- H5L_iterate_t iter_cb2 = new H5L_iter_callback();
+ H5L_iterate_t iter_cb2 = new H5L_iter_callback();
System.out.println("Links in the file:");
- H5.H5Lvisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb2, iter_data2);
-
+ H5.H5Lvisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb2,
+ iter_data2);
}
catch (Exception e) {
e.printStackTrace();
@@ -76,15 +79,16 @@ public class H5Ex_G_Visit {
}
/************************************************************
- * Operator function for H5Lvisit. This function simply retrieves the info for the object the current link points
- * to, and calls the operator function for H5Ovisit.
+ * Operator function for H5Lvisit. This function simply retrieves the info for the object the current link
+ *points to, and calls the operator function for H5Ovisit.
************************************************************/
private class idata {
public String link_name = null;
- public int link_type = -1;
+ public int link_type = -1;
- idata(String name, int type) {
+ idata(String name, int type)
+ {
this.link_name = name;
this.link_type = type;
}
@@ -95,20 +99,21 @@ public class H5Ex_G_Visit {
}
private class H5L_iter_callback implements H5L_iterate_t {
- public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data)
+ {
idata id = new idata(name, info.type);
- ((H5L_iter_data) op_data).iterdata.add(id);
+ ((H5L_iter_data)op_data).iterdata.add(id);
H5O_info_t infobuf;
int ret = 0;
try {
- // Get type of the object and display its name and type. The name of the object is passed to this
- // function by the Library.
- infobuf = H5.H5Oget_info_by_name(group, name, HDF5Constants.H5P_DEFAULT);
+ // Get type of the object and display its name and type. The name of the object is passed to
+ // this function by the Library.
+ infobuf = H5.H5Oget_info_by_name(group, name, HDF5Constants.H5P_DEFAULT);
H5O_iterate_t iter_cbO = new H5O_iter_callback();
H5O_iterate_opdata_t iter_dataO = new H5O_iter_data();
- ret = iter_cbO.callback(group, name, infobuf, iter_dataO);
+ ret = iter_cbO.callback(group, name, infobuf, iter_dataO);
}
catch (Exception e) {
e.printStackTrace();
@@ -123,9 +128,10 @@ public class H5Ex_G_Visit {
}
private class H5O_iter_callback implements H5O_iterate_t {
- public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data)
+ {
idata id = new idata(name, info.type);
- ((H5O_iter_data) op_data).iterdata.add(id);
+ ((H5O_iter_data)op_data).iterdata.add(id);
System.out.print("/"); /* Print root group in object path */
@@ -145,5 +151,4 @@ public class H5Ex_G_Visit {
return 0;
}
}
-
}
diff --git a/java/examples/intro/CMakeLists.txt b/java/examples/intro/CMakeLists.txt
index 867740b..a5e2a67 100644
--- a/java/examples/intro/CMakeLists.txt
+++ b/java/examples/intro/CMakeLists.txt
@@ -36,6 +36,13 @@ foreach (example ${HDF_JAVA_EXAMPLES})
# install_jar (${example} ${HJAVA_INSTALL_DATA_DIR}/examples examples)
get_target_property (${example}_CLASSPATH ${example} CLASSDIR)
add_dependencies (${example} ${HDF5_JAVA_HDF5_LIB_TARGET})
+
+ #-----------------------------------------------------------------------------
+ # Add Target to clang-format
+ #-----------------------------------------------------------------------------
+ if (HDF5_ENABLE_FORMATTERS)
+ clang_format (HDF5_JAVA_${example}_SRC_FORMAT ${example}.java)
+ endif ()
endforeach ()
set (CMAKE_JAVA_INCLUDE_PATH "${HDF5_JAVA_JARS};${HDF5_JAVA_LOGGING_JAR};${HDF5_JAVA_LOGGING_NOP_JAR}")
diff --git a/java/examples/intro/H5_CreateAttribute.java b/java/examples/intro/H5_CreateAttribute.java
index 949a770..22ecdae 100644
--- a/java/examples/intro/H5_CreateAttribute.java
+++ b/java/examples/intro/H5_CreateAttribute.java
@@ -20,25 +20,26 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5_CreateAttribute {
- private static String FILENAME = "H5_CreateAttribute.h5";
- private static String DATASETNAME = "dset";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
+ private static String FILENAME = "H5_CreateAttribute.h5";
+ private static String DATASETNAME = "dset";
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
private static String DATASETATTRIBUTE = "Units";
- private static void CreateDatasetAttribute() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateDatasetAttribute()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims1 = { DIM_X, DIM_Y };
- long[] dims = { 2 };
- int[] attr_data = { 100, 200 };
+ long[] dims1 = {DIM_X, DIM_Y};
+ long[] dims = {2};
+ int[] attr_data = {100, 200};
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -55,8 +56,9 @@ public class H5_CreateAttribute {
// Create the dataset.
try {
if ((file_id >= 0) && (dataspace_id >= 0))
- dataset_id = H5.H5Dcreate(file_id, "/" + DATASETNAME, HDF5Constants.H5T_STD_I32BE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id = H5.H5Dcreate(file_id, "/" + DATASETNAME, HDF5Constants.H5T_STD_I32BE,
+ dataspace_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -82,8 +84,9 @@ public class H5_CreateAttribute {
// Create a dataset attribute.
try {
if ((dataset_id >= 0) && (dataspace_id >= 0))
- attribute_id = H5.H5Acreate(dataset_id, DATASETATTRIBUTE, HDF5Constants.H5T_STD_I32BE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attribute_id =
+ H5.H5Acreate(dataset_id, DATASETATTRIBUTE, HDF5Constants.H5T_STD_I32BE, dataspace_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -135,8 +138,5 @@ public class H5_CreateAttribute {
}
}
- public static void main(String[] args) {
- H5_CreateAttribute.CreateDatasetAttribute();
- }
-
+ public static void main(String[] args) { H5_CreateAttribute.CreateDatasetAttribute(); }
}
diff --git a/java/examples/intro/H5_CreateDataset.java b/java/examples/intro/H5_CreateDataset.java
index f938be2..20683e8 100644
--- a/java/examples/intro/H5_CreateDataset.java
+++ b/java/examples/intro/H5_CreateDataset.java
@@ -20,21 +20,22 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5_CreateDataset {
- private static String FILENAME = "H5_CreateDataset.h5";
+ private static String FILENAME = "H5_CreateDataset.h5";
private static String DATASETNAME = "dset";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
- private static void CreateDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -51,8 +52,9 @@ public class H5_CreateDataset {
// Create the dataset.
try {
if ((file_id >= 0) && (dataspace_id >= 0))
- dataset_id = H5.H5Dcreate(file_id, "/" + DATASETNAME, HDF5Constants.H5T_STD_I32BE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id = H5.H5Dcreate(file_id, "/" + DATASETNAME, HDF5Constants.H5T_STD_I32BE,
+ dataspace_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -84,11 +86,7 @@ public class H5_CreateDataset {
catch (Exception e) {
e.printStackTrace();
}
-
- }
-
- public static void main(String[] args) {
- H5_CreateDataset.CreateDataset();
}
+ public static void main(String[] args) { H5_CreateDataset.CreateDataset(); }
}
diff --git a/java/examples/intro/H5_CreateFile.java b/java/examples/intro/H5_CreateFile.java
index d48ba6c..4323581 100644
--- a/java/examples/intro/H5_CreateFile.java
+++ b/java/examples/intro/H5_CreateFile.java
@@ -22,13 +22,14 @@ import hdf.hdf5lib.HDF5Constants;
public class H5_CreateFile {
static final String FILENAME = "H5_CreateFile.h5";
- private static void CreateFile() {
+ private static void CreateFile()
+ {
long file_id = HDF5Constants.H5I_INVALID_HID;
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -42,11 +43,7 @@ public class H5_CreateFile {
catch (Exception e) {
e.printStackTrace();
}
-
- }
-
- public static void main(String[] args) {
- H5_CreateFile.CreateFile();
}
+ public static void main(String[] args) { H5_CreateFile.CreateFile(); }
}
diff --git a/java/examples/intro/H5_CreateGroup.java b/java/examples/intro/H5_CreateGroup.java
index c0bb954..a276cbd 100644
--- a/java/examples/intro/H5_CreateGroup.java
+++ b/java/examples/intro/H5_CreateGroup.java
@@ -20,17 +20,18 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5_CreateGroup {
- private static String FILENAME = "H5_CreateGroup.h5";
+ private static String FILENAME = "H5_CreateGroup.h5";
private static String GROUPNAME = "MyGroup";
- private static void CreateGroup() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateGroup()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -39,8 +40,8 @@ public class H5_CreateGroup {
// Create a group in the file.
try {
if (file_id >= 0)
- group_id = H5.H5Gcreate(file_id, "/" + GROUPNAME, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ group_id = H5.H5Gcreate(file_id, "/" + GROUPNAME, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -63,11 +64,7 @@ public class H5_CreateGroup {
catch (Exception e) {
e.printStackTrace();
}
-
- }
-
- public static void main(String[] args) {
- H5_CreateGroup.CreateGroup();
}
+ public static void main(String[] args) { H5_CreateGroup.CreateGroup(); }
}
diff --git a/java/examples/intro/H5_CreateGroupAbsoluteRelative.java b/java/examples/intro/H5_CreateGroupAbsoluteRelative.java
index f2c6168..2fb9c3c 100644
--- a/java/examples/intro/H5_CreateGroupAbsoluteRelative.java
+++ b/java/examples/intro/H5_CreateGroupAbsoluteRelative.java
@@ -20,13 +20,14 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5_CreateGroupAbsoluteRelative {
- private static String FILENAME = "H5_CreateGroupAbsoluteRelative.h5";
- private static String GROUPNAME = "MyGroup";
+ private static String FILENAME = "H5_CreateGroupAbsoluteRelative.h5";
+ private static String GROUPNAME = "MyGroup";
private static String GROUPNAME_A = "GroupA";
private static String GROUPNAME_B = "GroupB";
- private static void CreateGroupAbsoluteAndRelative() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void CreateGroupAbsoluteAndRelative()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long group1_id = HDF5Constants.H5I_INVALID_HID;
long group2_id = HDF5Constants.H5I_INVALID_HID;
long group3_id = HDF5Constants.H5I_INVALID_HID;
@@ -34,7 +35,7 @@ public class H5_CreateGroupAbsoluteRelative {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -44,7 +45,7 @@ public class H5_CreateGroupAbsoluteRelative {
try {
if (file_id >= 0)
group1_id = H5.H5Gcreate(file_id, "/" + GROUPNAME, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -53,8 +54,9 @@ public class H5_CreateGroupAbsoluteRelative {
// Create group "Group_A" in group "MyGroup" using absolute name.
try {
if (file_id >= 0)
- group2_id = H5.H5Gcreate(file_id, "/" + GROUPNAME + "/" + GROUPNAME_A, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ group2_id =
+ H5.H5Gcreate(file_id, "/" + GROUPNAME + "/" + GROUPNAME_A, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -63,8 +65,8 @@ public class H5_CreateGroupAbsoluteRelative {
// Create group "Group_B" in group "MyGroup" using relative name.
try {
if (group1_id >= 0)
- group3_id = H5.H5Gcreate(group1_id, GROUPNAME_B, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ group3_id = H5.H5Gcreate(group1_id, GROUPNAME_B, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -105,11 +107,10 @@ public class H5_CreateGroupAbsoluteRelative {
catch (Exception e) {
e.printStackTrace();
}
-
}
- public static void main(String[] args) {
+ public static void main(String[] args)
+ {
H5_CreateGroupAbsoluteRelative.CreateGroupAbsoluteAndRelative();
}
-
}
diff --git a/java/examples/intro/H5_CreateGroupDataset.java b/java/examples/intro/H5_CreateGroupDataset.java
index f1d1cba..1d7cf99 100644
--- a/java/examples/intro/H5_CreateGroupDataset.java
+++ b/java/examples/intro/H5_CreateGroupDataset.java
@@ -20,27 +20,28 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5_CreateGroupDataset {
- private static String FILENAME = "H5_CreateGroupDataset.h5";
- private static String GROUPNAME = "MyGroup";
- private static String GROUPNAME_A = "GroupA";
+ private static String FILENAME = "H5_CreateGroupDataset.h5";
+ private static String GROUPNAME = "MyGroup";
+ private static String GROUPNAME_A = "GroupA";
private static String DATASETNAME1 = "dset1";
private static String DATASETNAME2 = "dset2";
- private static final int DIM1_X = 3;
- private static final int DIM1_Y = 3;
- private static final int DIM2_X = 2;
- private static final int DIM2_Y = 10;
-
- private static void h5_crtgrpd() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long group_id = HDF5Constants.H5I_INVALID_HID;
- long group1_id = HDF5Constants.H5I_INVALID_HID;
- long group2_id = HDF5Constants.H5I_INVALID_HID;
+ private static final int DIM1_X = 3;
+ private static final int DIM1_Y = 3;
+ private static final int DIM2_X = 2;
+ private static final int DIM2_Y = 10;
+
+ private static void h5_crtgrpd()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ long dataspace_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long group_id = HDF5Constants.H5I_INVALID_HID;
+ long group1_id = HDF5Constants.H5I_INVALID_HID;
+ long group2_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset1_data = new int[DIM1_X][DIM1_Y];
int[][] dset2_data = new int[DIM2_X][DIM2_Y];
- long[] dims1 = { DIM1_X, DIM1_Y };
- long[] dims2 = { DIM2_X, DIM2_Y };
+ long[] dims1 = {DIM1_X, DIM1_Y};
+ long[] dims2 = {DIM2_X, DIM2_Y};
// Initialize the first dataset.
for (int indx = 0; indx < DIM1_X; indx++)
@@ -55,15 +56,16 @@ public class H5_CreateGroupDataset {
// Create a file.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
// Create a group named "/MyGroup" in the file.
if (file_id >= 0) {
group1_id = H5.H5Gcreate(file_id, "/" + GROUPNAME, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
// Create group "Group_A" in group "MyGroup" using absolute name.
if (group1_id >= 0) {
- group2_id = H5.H5Gcreate(file_id, "/" + GROUPNAME + "/" + GROUPNAME_A, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ group2_id =
+ H5.H5Gcreate(file_id, "/" + GROUPNAME + "/" + GROUPNAME_A, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
if (group2_id >= 0)
H5.H5Gclose(group2_id);
}
@@ -86,8 +88,9 @@ public class H5_CreateGroupDataset {
// Create the dataset in group "MyGroup".
try {
if ((file_id >= 0) && (dataspace_id >= 0))
- dataset_id = H5.H5Dcreate(file_id, "/" + GROUPNAME + "/" + DATASETNAME1, HDF5Constants.H5T_STD_I32BE,
- dataspace_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id = H5.H5Dcreate(
+ file_id, "/" + GROUPNAME + "/" + DATASETNAME1, HDF5Constants.H5T_STD_I32BE, dataspace_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -96,8 +99,8 @@ public class H5_CreateGroupDataset {
// Write the first dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset1_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset1_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -126,7 +129,8 @@ public class H5_CreateGroupDataset {
// Open an existing group of the specified file.
try {
if (file_id >= 0)
- group_id = H5.H5Gopen(file_id, "/" + GROUPNAME + "/" + GROUPNAME_A, HDF5Constants.H5P_DEFAULT);
+ group_id =
+ H5.H5Gopen(file_id, "/" + GROUPNAME + "/" + GROUPNAME_A, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -144,7 +148,8 @@ public class H5_CreateGroupDataset {
try {
if ((group_id >= 0) && (dataspace_id >= 0))
dataset_id = H5.H5Dcreate(group_id, DATASETNAME2, HDF5Constants.H5T_STD_I32BE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -153,8 +158,8 @@ public class H5_CreateGroupDataset {
// Write the second dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset2_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset2_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -197,8 +202,5 @@ public class H5_CreateGroupDataset {
}
}
- public static void main(String[] args) {
- H5_CreateGroupDataset.h5_crtgrpd();
- }
-
+ public static void main(String[] args) { H5_CreateGroupDataset.h5_crtgrpd(); }
}
diff --git a/java/examples/intro/H5_ReadWrite.java b/java/examples/intro/H5_ReadWrite.java
index 67e1ac5..379fe20 100644
--- a/java/examples/intro/H5_ReadWrite.java
+++ b/java/examples/intro/H5_ReadWrite.java
@@ -20,16 +20,17 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
public class H5_ReadWrite {
- private static String FILENAME = "H5_ReadWrite.h5";
+ private static String FILENAME = "H5_ReadWrite.h5";
private static String DATASETNAME = "dset";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
- private static void ReadWriteDataset() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ private static void ReadWriteDataset()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { DIM_X, DIM_Y };
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {DIM_X, DIM_Y};
int[][] dset_data = new int[DIM_X][DIM_Y];
// Initialize the dataset.
@@ -40,7 +41,7 @@ public class H5_ReadWrite {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -57,8 +58,9 @@ public class H5_ReadWrite {
// Create the dataset.
try {
if ((file_id >= 0) && (dataspace_id >= 0))
- dataset_id = H5.H5Dcreate(file_id, "/" + DATASETNAME, HDF5Constants.H5T_STD_I32BE, dataspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id = H5.H5Dcreate(file_id, "/" + DATASETNAME, HDF5Constants.H5T_STD_I32BE,
+ dataspace_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -67,8 +69,8 @@ public class H5_ReadWrite {
// Write the dataset.
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -76,8 +78,8 @@ public class H5_ReadWrite {
try {
if (dataset_id >= 0)
- H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dread(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -102,8 +104,5 @@ public class H5_ReadWrite {
}
}
- public static void main(String[] args) {
- H5_ReadWrite.ReadWriteDataset();
- }
-
+ public static void main(String[] args) { H5_ReadWrite.ReadWriteDataset(); }
}
diff --git a/java/src/hdf/hdf5lib/CMakeLists.txt b/java/src/hdf/hdf5lib/CMakeLists.txt
index a26e117..0b716f7 100644
--- a/java/src/hdf/hdf5lib/CMakeLists.txt
+++ b/java/src/hdf/hdf5lib/CMakeLists.txt
@@ -132,6 +132,9 @@ SET_GLOBAL_VARIABLE (HDF5_JAVA_JARS ${${HDF5_JAVA_HDF5_LIB_TARGET}_JAR_FILE})
add_dependencies (${HDF5_JAVA_HDF5_LIB_TARGET} ${HDF5_JAVA_JNI_LIB_TARGET})
set_target_properties (${HDF5_JAVA_HDF5_LIB_TARGET} PROPERTIES FOLDER libraries/java)
+if (HDF5_ENABLE_FORMATTERS)
+ clang_format (HDF5_JAVA_SRC_FORMAT ${HDF5_JAVA_HDF_HDF5_CALLBACKS_SOURCES} ${HDF5_JAVA_HDF_HDF5_EXCEPTIONS_SOURCES} ${HDF5_JAVA_HDF_HDF5_STRUCTS_SOURCES} ${HDF5_JAVA_HDF_HDF5_SOURCES})
+endif ()
create_javadoc(hdf5_java_doc
FILES ${HDF5_JAVADOC_HDF_HDF5_CALLBACKS_SOURCES} ${HDF5_JAVADOC_HDF_HDF5_EXCEPTIONS_SOURCES} ${HDF5_JAVADOC_HDF_HDF5_STRUCTS_SOURCES} ${HDF5_JAVADOC_HDF_HDF5_SOURCES}
diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java
index 3180ede..9fac20c 100644
--- a/java/src/hdf/hdf5lib/H5.java
+++ b/java/src/hdf/hdf5lib/H5.java
@@ -11,47 +11,47 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
package hdf.hdf5lib;
import java.io.File;
import java.nio.ByteBuffer;
import java.util.Collection;
import java.util.LinkedHashSet;
+
import hdf.hdf5lib.callbacks.H5A_iterate_cb;
import hdf.hdf5lib.callbacks.H5A_iterate_t;
import hdf.hdf5lib.callbacks.H5D_iterate_cb;
import hdf.hdf5lib.callbacks.H5D_iterate_t;
import hdf.hdf5lib.callbacks.H5E_walk_cb;
import hdf.hdf5lib.callbacks.H5E_walk_t;
-import hdf.hdf5lib.callbacks.H5L_iterate_t;
import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t;
-import hdf.hdf5lib.callbacks.H5O_iterate_t;
+import hdf.hdf5lib.callbacks.H5L_iterate_t;
import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t;
+import hdf.hdf5lib.callbacks.H5O_iterate_t;
import hdf.hdf5lib.callbacks.H5P_cls_close_func_cb;
import hdf.hdf5lib.callbacks.H5P_cls_close_func_t;
import hdf.hdf5lib.callbacks.H5P_cls_copy_func_cb;
import hdf.hdf5lib.callbacks.H5P_cls_copy_func_t;
import hdf.hdf5lib.callbacks.H5P_cls_create_func_cb;
import hdf.hdf5lib.callbacks.H5P_cls_create_func_t;
-import hdf.hdf5lib.callbacks.H5P_prp_set_func_cb;
-import hdf.hdf5lib.callbacks.H5P_prp_get_func_cb;
-import hdf.hdf5lib.callbacks.H5P_prp_delete_func_cb;
-import hdf.hdf5lib.callbacks.H5P_prp_copy_func_cb;
-import hdf.hdf5lib.callbacks.H5P_prp_compare_func_cb;
-import hdf.hdf5lib.callbacks.H5P_prp_close_func_cb;
-import hdf.hdf5lib.callbacks.H5P_prp_create_func_cb;
import hdf.hdf5lib.callbacks.H5P_iterate_cb;
import hdf.hdf5lib.callbacks.H5P_iterate_t;
+import hdf.hdf5lib.callbacks.H5P_prp_close_func_cb;
+import hdf.hdf5lib.callbacks.H5P_prp_compare_func_cb;
+import hdf.hdf5lib.callbacks.H5P_prp_copy_func_cb;
+import hdf.hdf5lib.callbacks.H5P_prp_create_func_cb;
+import hdf.hdf5lib.callbacks.H5P_prp_delete_func_cb;
+import hdf.hdf5lib.callbacks.H5P_prp_get_func_cb;
+import hdf.hdf5lib.callbacks.H5P_prp_set_func_cb;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5JavaException;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.structs.H5AC_cache_config_t;
import hdf.hdf5lib.structs.H5A_info_t;
import hdf.hdf5lib.structs.H5E_error2_t;
-import hdf.hdf5lib.structs.H5F_info2_t;
import hdf.hdf5lib.structs.H5FD_hdfs_fapl_t;
import hdf.hdf5lib.structs.H5FD_ros3_fapl_t;
+import hdf.hdf5lib.structs.H5F_info2_t;
import hdf.hdf5lib.structs.H5G_info_t;
import hdf.hdf5lib.structs.H5L_info_t;
import hdf.hdf5lib.structs.H5O_info_t;
@@ -61,8 +61,8 @@ import hdf.hdf5lib.structs.H5O_token_t;
/**
* This class is the Java interface for the HDF5 library.
* <p>
- * This code is the called by Java programs to access the entry points of the HDF5 library. Each routine wraps a single
- * HDF5 entry point, generally with the arguments and return codes analogous to the C interface.
+ * This code is the called by Java programs to access the entry points of the HDF5 library. Each routine wraps
+ * a single HDF5 entry point, generally with the arguments and return codes analogous to the C interface.
* <p>
* For details of the HDF5 library, see the HDF5 Documentation at:
* <a href="http://hdfgroup.org/HDF5/">http://hdfgroup.org/HDF5/</a>
@@ -71,8 +71,8 @@ import hdf.hdf5lib.structs.H5O_token_t;
* <b>Mapping of arguments for Java</b>
*
* <p>
- * In general, arguments to the HDF Java API are straightforward translations from the 'C' API described in the HDF
- * Reference Manual.
+ * In general, arguments to the HDF Java API are straightforward translations from the 'C' API described in
+ * the HDF Reference Manual.
*
* <table border=1>
* <caption><b>HDF-5 C types to Java types</b> </caption>
@@ -112,17 +112,19 @@ import hdf.hdf5lib.structs.H5O_token_t;
* </table>
* <b>General Rules for Passing Arguments and Results</b>
* <p>
- * In general, arguments passed <b>IN</b> to Java are the analogous basic types, as above. The exception is for arrays,
- * which are discussed below.
+ * In general, arguments passed <b>IN</b> to Java are the analogous basic types, as above. The exception is
+ * for arrays, which are discussed below.
* <p>
- * The <i>return value</i> of Java methods is also the analogous type, as above. A major exception to that rule is that
- * all HDF functions that return SUCCEED/FAIL are declared <i>boolean</i> in the Java version, rather than <i>int</i> as
- * in the C. Functions that return a value or else FAIL are declared the equivalent to the C function. However, in most
- * cases the Java method will raise an exception instead of returning an error code. See <a href="#ERRORS">Errors and
- * Exceptions</a> below.
+ * The <i>return value</i> of Java methods is also the analogous type, as above. A major exception to that
+ * rule is that all HDF functions that return SUCCEED/FAIL are declared <i>boolean</i> in the Java version,
+ * rather than <i>int</i> as in the C. Functions that return a value or else FAIL are declared the
+ * equivalent to the C function.
+ * However, in most cases the Java method will raise an exception instead of returning an error code.
+ * See <a href="#ERRORS">Errors and Exceptions</a> below.
* <p>
- * Java does not support pass by reference of arguments, so arguments that are returned through <b>OUT</b> parameters
- * must be wrapped in an object or array. The Java API for HDF consistently wraps arguments in arrays.
+ * Java does not support pass by reference of arguments, so arguments that are returned through <b>OUT</b>
+ * parameters must be wrapped in an object or array. The Java API for HDF consistently wraps arguments in
+ * arrays.
* <p>
* For instance, a function that returns two integers is declared:
*
@@ -143,53 +145,57 @@ import hdf.hdf5lib.structs.H5O_token_t;
* </pre>
*
* <p>
- * All the routines where this convention is used will have specific documentation of the details, given below.
+ * All the routines where this convention is used will have specific documentation of the details, given
+ * below.
* <p>
* <b>Arrays</b>
* <p>
- * HDF5 needs to read and write multi-dimensional arrays of any number type (and records). The HDF5 API describes the
- * layout of the source and destination, and the data for the array passed as a block of bytes, for instance,
+ * HDF5 needs to read and write multi-dimensional arrays of any number type (and records). The HDF5 API
+ * describes the layout of the source and destination, and the data for the array passed as a block of
+ * bytes, for instance,
*
* <pre>
- * herr_t H5Dread(long fid, long filetype, long memtype, long memspace,
- * void * data);
+ * herr_t H5Dread(long fid, long filetype, long memtype, long memspace, void * data);
* </pre>
*
* <p>
- * where ``void *'' means that the data may be any valid numeric type, and is a contiguous block of bytes that is the
- * data for a multi-dimensional array. The other parameters describe the dimensions, rank, and datatype of the array on
- * disk (source) and in memory (destination).
+ * where ``void *'' means that the data may be any valid numeric type, and is a contiguous block of bytes that
+ * is the data for a multi-dimensional array. The other parameters describe the dimensions, rank, and datatype
+ * of the array ondisk (source) and in memory (destination).
* <p>
- * For Java, this ``ANY'' is a problem, as the type of data must always be declared. Furthermore, multidimensional
- * arrays are definitely <i>not</i> laid out contiguously in memory. It would be infeasible to declare a separate
- * routine for every combination of number type and dimensionality. For that reason, the
- * <a href="./hdf.hdf5lib.HDFArray.html"><b>HDFArray</b></a> class is used to discover the type, shape, and size of the
- * data array at run time, and to convert to and from a contiguous array of bytes in synchronized static native C order.
+ * For Java, this ``ANY'' is a problem, as the type of data must always be declared. Furthermore,
+ * multidimensional arrays are definitely <i>not</i> laid out contiguously in memory. It would be infeasible
+ * to declare a separate routine for every combination of number type and dimensionality. For that reason, the
+ * <a href="./hdf.hdf5lib.HDFArray.html"><b>HDFArray</b></a> class is used to discover the type, shape, and
+ * size of the data array at run time, and to convert to and from a contiguous array of bytes in synchronized
+ * static native C order.
* <p>
- * The upshot is that any Java array of numbers (either primitive or sub-classes of type <b>Number</b>) can be passed as
- * an ``Object'', and the Java API will translate to and from the appropriate packed array of bytes needed by the C
- * library. So the function above would be declared:
+ * The upshot is that any Java array of numbers (either primitive or sub-classes of type <b>Number</b>) can be
+ * passed as an ``Object'', and the Java API will translate to and from the appropriate packed array of bytes
+ * needed by the C library. So the function above would be declared:
*
* <pre>
- * public synchronized static native int H5Dread(long fid, long filetype, long memtype, long memspace, Object data);
+ * public synchronized static native int H5Dread(long fid, long filetype, long memtype, long memspace,
+ * Object data);
* </pre>
* OPEN_IDS.addElement(id);
- * and the parameter <i>data</i> can be any multi-dimensional array of numbers, such as float[][], or int[][][], or
- * Double[][].
+ * and the parameter <i>data</i> can be any multi-dimensional array of numbers, such as float[][], or
+ * int[][][], or Double[][].
* <p>
* <b>HDF-5 Constants</b>
* <p>
- * The HDF-5 API defines a set of constants and enumerated values. Most of these values are available to Java programs
- * via the class <a href="./hdf.hdf5lib.HDF5Constants.html"> <b>HDF5Constants</b></a>. For example, the parameters for
- * the h5open() call include two numeric values, <b><i>HDFConstants.H5F_ACC_RDWR</i></b> and
- * <b><i>HDF5Constants.H5P_DEFAULT</i></b>. As would be expected, these numbers correspond to the C constants
+ * The HDF-5 API defines a set of constants and enumerated values. Most of these values are available to Java
+ * programs via the class <a href="./hdf.hdf5lib.HDF5Constants.html"> <b>HDF5Constants</b></a>. For example,
+ * the parameters for the h5open() call include two numeric values, <b><i>HDFConstants.H5F_ACC_RDWR</i></b>
+ * and <b><i>HDF5Constants.H5P_DEFAULT</i></b>.
+ * As would be expected, these numbers correspond to the C constants
* <b><i>H5F_ACC_RDWR</i></b> and <b><i>H5P_DEFAULT</i></b>.
* <p>
- * The HDF-5 API defines a set of values that describe number types and sizes, such as "H5T_NATIVE_INT" and "hsize_t".
- * These values are determined at run time by the HDF-5 C library. To support these parameters, the Java class
- * <a href="./hdf.hdf5lib.HDF5CDataTypes.html"> <b>HDF5CDataTypes</b></a> looks up the values when initiated. The values
- * can be accessed as public variables of the Java class, such as:
+ * The HDF-5 API defines a set of values that describe number types and sizes, such as "H5T_NATIVE_INT" and
+ * "hsize_t". These values are determined at run time by the HDF-5 C library. To support these parameters,
+ * the Java class <a href="./hdf.hdf5lib.HDF5CDataTypes.html"> <b>HDF5CDataTypes</b></a> looks up the values
+ * when initiated. The values can be accessed as public variables of the Java class, such as:
*
* <pre>
* long data_type = HDF5CDataTypes.JH5T_NATIVE_INT;
@@ -200,20 +206,22 @@ import hdf.hdf5lib.structs.H5O_token_t;
* <p>
* <b>Error handling and Exceptions</b>
* <p>
- * The HDF5 error API (H5E) manages the behavior of the error stack in the HDF-5 library. This API is omitted from the
- * JHI5. Errors are converted into Java exceptions. This is totally different from the C interface, but is very natural
- * for Java programming.
+ * The HDF5 error API (H5E) manages the behavior of the error stack in the HDF-5 library. This API is omitted
+ * from the JHI5. Errors are converted into Java exceptions. This is totally different from the C interface,
+ * but is very natural for Java programming.
* <p>
* The exceptions of the JHI5 are organized as sub-classes of the class
- * <a href="./hdf.hdf5lib.exceptions.HDF5Exception.html"> <b>HDF5Exception</b></a>. There are two subclasses of
- * <b>HDF5Exception</b>, <a href="./hdf.hdf5lib.exceptions.HDF5LibraryException.html"> <b>HDF5LibraryException</b></a>
- * and <a href="./hdf.hdf5lib.exceptions.HDF5JavaException.html"> <b>HDF5JavaException</b></a>. The sub-classes of the
- * former represent errors from the HDF-5 C library, while sub-classes of the latter represent errors in the JHI5
- * wrapper and support code.
+ * <a href="./hdf.hdf5lib.exceptions.HDF5Exception.html"> <b>HDF5Exception</b></a>. There are two subclasses
+ * of
+ * <b>HDF5Exception</b>, <a href="./hdf.hdf5lib.exceptions.HDF5LibraryException.html">
+ <b>HDF5LibraryException</b></a>
+ * and <a href="./hdf.hdf5lib.exceptions.HDF5JavaException.html"> <b>HDF5JavaException</b></a>. The
+ * sub-classes of the former represent errors from the HDF-5 C library, while sub-classes of the latter
+ * represent errors in the JHI5 wrapper and support code.
* <p>
- * The super-class <b><i>HDF5LibraryException</i></b> implements the method '<b><i>printStackTrace()</i></b>', which
- * prints out the HDF-5 error stack, as described in the HDF-5 C API <i><b>H5Eprint()</b>.</i> This may be used by Java
- * exception handlers to print out the HDF-5 error stack.
+ * The super-class <b><i>HDF5LibraryException</i></b> implements the method '<b><i>printStackTrace()</i></b>',
+ * which prints out the HDF-5 error stack, as described in the HDF-5 C API <i><b>H5Eprint()</b>.</i> This may
+ * be used by Java exception handlers to print out the HDF-5 error stack.
* <hr>
*
* @version HDF5 1.13.2 <BR>
@@ -222,7 +230,8 @@ import hdf.hdf5lib.structs.H5O_token_t;
* <a href ="./hdf.hdf5lib.HDF5CDataTypes.html"> hdf.hdf5lib.HDF5CDataTypes</a><BR>
* <a href ="./hdf.hdf5lib.HDF5Exception.html"> hdf.hdf5lib.HDF5Exception</a><BR>
* <a href="http://hdfgroup.org/HDF5/"> http://hdfgroup.org/HDF5"</a>
- **/
+ *
+ */
public class H5 implements java.io.Serializable {
/**
*
@@ -239,38 +248,36 @@ public class H5 implements java.io.Serializable {
*
* Make sure to update the versions number when a different library is used.
*/
- public final static int LIB_VERSION[] = { 1, 13, 2 };
+ public final static int LIB_VERSION[] = {1, 13, 2};
/**
- * add system property to load library by path
- */
+ * add system property to load library by path
+ */
public final static String H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib";
/**
- * add system property to load library by name from library path, via System.loadLibrary()
- */
+ * add system property to load library by name from library path, via System.loadLibrary()
+ */
public final static String H5_LIBRARY_NAME_PROPERTY_KEY = "hdf.hdf5lib.H5.loadLibraryName";
private static String s_libraryName;
private static boolean isLibraryLoaded = false;
- private final static boolean IS_CRITICAL_PINNING = true;
- // change from Vector to LinkedHashSet - jp 6-Oct-2014
+ private final static boolean IS_CRITICAL_PINNING = true;
private final static LinkedHashSet<Long> OPEN_IDS = new LinkedHashSet<Long>();
- static {
- loadH5Lib();
- }
+ static { loadH5Lib(); }
/**
- * load native library
- */
- public static void loadH5Lib() {
+ * load native library
+ */
+ public static void loadH5Lib()
+ {
// Make sure that the library is loaded only once
if (isLibraryLoaded)
return;
// first try loading library by name from user supplied library path
- s_libraryName = System.getProperty(H5_LIBRARY_NAME_PROPERTY_KEY, null);
+ s_libraryName = System.getProperty(H5_LIBRARY_NAME_PROPERTY_KEY, null);
String mappedName = null;
if ((s_libraryName != null) && (s_libraryName.length() > 0)) {
try {
@@ -311,7 +318,7 @@ public class H5 implements java.io.Serializable {
}
else {
isLibraryLoaded = false;
- throw (new UnsatisfiedLinkError("Invalid HDF5 library, " + filename));
+ throw(new UnsatisfiedLinkError("Invalid HDF5 library, " + filename));
}
}
}
@@ -320,7 +327,7 @@ public class H5 implements java.io.Serializable {
if (!isLibraryLoaded) {
try {
s_libraryName = "hdf5_java";
- mappedName = System.mapLibraryName(s_libraryName);
+ mappedName = System.mapLibraryName(s_libraryName);
System.loadLibrary("hdf5_java");
isLibraryLoaded = true;
}
@@ -369,18 +376,14 @@ public class H5 implements java.io.Serializable {
*
* @return Returns a count of open IDs
*/
- public final static int getOpenIDCount() {
- return OPEN_IDS.size();
- }
+ public final static int getOpenIDCount() { return OPEN_IDS.size(); }
/**
* Get the open IDs
*
* @return Returns a collection of open IDs
*/
- public final static Collection<Long> getOpenIDs() {
- return OPEN_IDS;
- }
+ public final static Collection<Long> getOpenIDs() { return OPEN_IDS; }
/**
* H5check_version verifies that the arguments match the version numbers compiled into the library.
@@ -391,20 +394,21 @@ public class H5 implements java.io.Serializable {
* The minor version of the library.
* @param relnum
* The release number of the library.
- * @return a non-negative value if successful. Upon failure (when the versions do not match), this function causes
- * the application to abort (i.e., crash)
+ * @return a non-negative value if successful. Upon failure (when the versions do not match), this
+ * function causes the application to abort (i.e., crash)
*
- * See C API function: herr_t H5check_version()
+ * See C API function: herr_t H5check_version()
**/
public synchronized static native int H5check_version(int majnum, int minnum, int relnum);
/**
- * H5close flushes all data to disk, closes all file identifiers, and cleans up all memory used by the library.
+ * H5close flushes all data to disk, closes all file identifiers, and cleans up all memory used by the
+ * library.
*
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5close() throws HDF5LibraryException;
@@ -414,35 +418,35 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5open() throws HDF5LibraryException;
/**
- * H5dont_atexit indicates to the library that an atexit() cleanup routine should not be installed. In order to be
- * effective, this routine must be called before any other HDF function calls, and must be called each time the
- * library is loaded/linked into the application (the first time and after it's been unloaded).
- * <P>
- * This is called by the static initializer, so this should never need to be explicitly called by a Java program.
+ * H5dont_atexit indicates to the library that an atexit() cleanup routine should not be installed. In
+ * order to be effective, this routine must be called before any other HDF function calls, and must be
+ * called each time the library is loaded/linked into the application (the first time and after it's been
+ * unloaded). <P> This is called by the static initializer, so this should never need to be explicitly
+ * called by a Java program.
*
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
private synchronized static native int H5dont_atexit() throws HDF5LibraryException;
/**
- * Turn off error handling. By default, the C library prints the error stack of the HDF-5 C library on stdout. This
- * behavior may be disabled by calling H5error_off().
+ * Turn off error handling. By default, the C library prints the error stack of the HDF-5 C library on
+ * stdout. This behavior may be disabled by calling H5error_off().
*
* @return a non-negative value if successful
*/
public synchronized static native int H5error_off();
/**
- * Turn on error handling. By default, the C library prints the error stack of the HDF-5 C library on stdout. This
- * behavior may be re-enabled by calling H5error_on().
+ * Turn on error handling. By default, the C library prints the error stack of the HDF-5 C library on
+ * stdout. This behavior may be re-enabled by calling H5error_on().
*/
public synchronized static native void H5error_on();
@@ -452,13 +456,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5garbage_collect() throws HDF5LibraryException;
/**
- * H5get_libversion retrieves the major, minor, and release numbers of the version of the HDF library which is
- * linked to the application.
+ * H5get_libversion retrieves the major, minor, and release numbers of the version of the HDF library
+ * which is linked to the application.
*
* @param libversion
* The version information of the HDF library.
@@ -471,7 +475,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful, along with the version information.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5get_libversion(int[] libversion) throws HDF5LibraryException;
@@ -502,10 +506,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful, along with the version information.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
- */
+ * Error from the HDF-5 Library.
+ */
public synchronized static native int H5set_free_list_limits(int reg_global_lim, int reg_list_lim,
- int arr_global_lim, int arr_list_lim, int blk_global_lim, int blk_list_lim) throws HDF5LibraryException;
+ int arr_global_lim, int arr_list_lim,
+ int blk_global_lim, int blk_list_lim)
+ throws HDF5LibraryException;
/**
* H5export_dataset is a utility function to save data in a file.
@@ -523,10 +529,11 @@ public class H5 implements java.io.Serializable {
* 3 - export data as binary Big Endian.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5export_dataset(String file_export_name, long file_id,
- String object_path, int binary_order) throws HDF5LibraryException;
+ String object_path, int binary_order)
+ throws HDF5LibraryException;
/**
* H5export_attribute is a utility function to save data in a file.
@@ -544,10 +551,11 @@ public class H5 implements java.io.Serializable {
* 3 - export data as binary Big Endian.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5export_attribute(String file_export_name, long dataset_id,
- String attribute_name, int binary_order) throws HDF5LibraryException;
+ String attribute_name, int binary_order)
+ throws HDF5LibraryException;
/**
* H5is_library_threadsafe Checks to see if the library was built with thread-safety enabled.
@@ -577,9 +585,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static int H5Aclose(long attr_id) throws HDF5LibraryException {
+ public static int H5Aclose(long attr_id) throws HDF5LibraryException
+ {
if (attr_id < 0)
return 0; // throw new HDF5LibraryException("Negative ID");;
@@ -602,12 +611,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native int H5Acopy(long src_aid, long dst_aid) throws HDF5LibraryException;
/**
- * H5Acreate creates an attribute, attr_name, which is attached to the object specified by the identifier loc_id.
+ * H5Acreate creates an attribute, attr_name, which is attached to the object specified by the identifier
+ * loc_id.
*
* @param loc_id
* IN: Location or object identifier; may be dataset or group
@@ -625,12 +635,13 @@ public class H5 implements java.io.Serializable {
* @return An attribute identifier if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - Name is null.
+ * Name is null.
**/
- public static long H5Acreate(long loc_id, String attr_name, long type_id, long space_id, long acpl_id, long aapl_id)
- throws HDF5LibraryException, NullPointerException {
+ public static long H5Acreate(long loc_id, String attr_name, long type_id, long space_id, long acpl_id,
+ long aapl_id) throws HDF5LibraryException, NullPointerException
+ {
long id = _H5Acreate2(loc_id, attr_name, type_id, space_id, acpl_id, aapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5A create add {}", id);
@@ -643,15 +654,16 @@ public class H5 implements java.io.Serializable {
/**
* H5Acreate2 an attribute, attr_name, which is attached to the object specified by the identifier loc_id.
*
- * @see public static long H5Acreate( long loc_id, String attr_name, long type_id, long space_id, long acpl_id, long
- * aapl_id )
+ * @see public static long H5Acreate( long loc_id, String attr_name, long type_id, long space_id, long
+ * acpl_id, long aapl_id )
**/
- private synchronized static native long _H5Acreate2(long loc_id, String attr_name, long type_id, long space_id,
- long acpl_id, long aapl_id) throws HDF5LibraryException, NullPointerException;
+ private synchronized static native long _H5Acreate2(long loc_id, String attr_name, long type_id,
+ long space_id, long acpl_id, long aapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Acreate_by_name creates an attribute, attr_name, which is attached to the object specified by loc_id and
- * obj_name.
+ * H5Acreate_by_name creates an attribute, attr_name, which is attached to the object specified by loc_id
+ * and obj_name.
*
* @param loc_id
* IN: Location or object identifier; may be dataset or group
@@ -673,13 +685,16 @@ public class H5 implements java.io.Serializable {
* @return An attribute identifier if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static long H5Acreate_by_name(long loc_id, String obj_name, String attr_name, long type_id, long space_id,
- long acpl_id, long aapl_id, long lapl_id) throws HDF5LibraryException, NullPointerException {
- long id = _H5Acreate_by_name(loc_id, obj_name, attr_name, type_id, space_id, acpl_id, aapl_id, lapl_id);
+ public static long H5Acreate_by_name(long loc_id, String obj_name, String attr_name, long type_id,
+ long space_id, long acpl_id, long aapl_id, long lapl_id)
+ throws HDF5LibraryException, NullPointerException
+ {
+ long id =
+ _H5Acreate_by_name(loc_id, obj_name, attr_name, type_id, space_id, acpl_id, aapl_id, lapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Acreate_by_name add {}", id);
OPEN_IDS.add(id);
@@ -689,8 +704,9 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Acreate_by_name(long loc_id, String obj_name, String attr_name,
- long type_id, long space_id, long acpl_id, long aapl_id, long lapl_id) throws HDF5LibraryException,
- NullPointerException;
+ long type_id, long space_id, long acpl_id,
+ long aapl_id, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Adelete removes the attribute specified by its name, name, from a dataset, group, or named datatype.
@@ -703,12 +719,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native int H5Adelete(long loc_id, String name) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Adelete(long loc_id, String name)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Adelete_by_idx removes an attribute, specified by its location in an index, from an object.
@@ -727,16 +743,17 @@ public class H5 implements java.io.Serializable {
* IN: Link access property list identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - obj_name is null.
+ * obj_name is null.
**/
- public synchronized static native void H5Adelete_by_idx(long loc_id, String obj_name, int idx_type, int order,
- long n, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Adelete_by_idx(long loc_id, String obj_name, int idx_type,
+ int order, long n, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Adelete_by_name removes the attribute attr_name from an object specified by location and name, loc_id and
- * obj_name, respectively.
+ * H5Adelete_by_name removes the attribute attr_name from an object specified by location and name, loc_id
+ * and obj_name, respectively.
*
* @param loc_id
* IN: Location or object identifier; may be dataset or group
@@ -750,12 +767,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native int H5Adelete_by_name(long loc_id, String obj_name, String attr_name, long lapl_id)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Adelete_by_name(long loc_id, String obj_name, String attr_name,
+ long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aexists determines whether the attribute attr_name exists on the object specified by obj_id.
@@ -768,16 +786,16 @@ public class H5 implements java.io.Serializable {
* @return boolean true if an attribute with a given name exists.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - attr_name is null.
+ * attr_name is null.
**/
- public synchronized static native boolean H5Aexists(long obj_id, String attr_name) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native boolean H5Aexists(long obj_id, String attr_name)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Aexists_by_name determines whether the attribute attr_name exists on an object. That object is specified by its
- * location and name, loc_id and obj_name, respectively.
+ * H5Aexists_by_name determines whether the attribute attr_name exists on an object. That object is
+ * specified by its location and name, loc_id and obj_name, respectively.
*
* @param loc_id
* IN: Location of object to which attribute is attached .
@@ -791,12 +809,13 @@ public class H5 implements java.io.Serializable {
* @return boolean true if an attribute with a given name exists, otherwise returns false.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native boolean H5Aexists_by_name(long loc_id, String obj_name, String attr_name,
- long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native boolean H5Aexists_by_name(long loc_id, String obj_name,
+ String attr_name, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aget_info retrieves attribute information, by attribute identifier.
@@ -807,7 +826,7 @@ public class H5 implements java.io.Serializable {
* @return A buffer(H5A_info_t) for Attribute information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native H5A_info_t H5Aget_info(long attr_id) throws HDF5LibraryException;
@@ -830,12 +849,14 @@ public class H5 implements java.io.Serializable {
* @return A buffer(H5A_info_t) for Attribute information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - obj_name is null.
+ * obj_name is null.
**/
- public synchronized static native H5A_info_t H5Aget_info_by_idx(long loc_id, String obj_name, int idx_type,
- int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native H5A_info_t H5Aget_info_by_idx(long loc_id, String obj_name,
+ int idx_type, int order, long n,
+ long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aget_info_by_name Retrieves attribute information, by attribute name.
@@ -852,12 +873,13 @@ public class H5 implements java.io.Serializable {
* @return A buffer(H5A_info_t) for Attribute information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - obj_name is null.
+ * obj_name is null.
**/
- public synchronized static native H5A_info_t H5Aget_info_by_name(long loc_id, String obj_name, String attr_name,
- long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native H5A_info_t H5Aget_info_by_name(long loc_id, String obj_name,
+ String attr_name, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aget_name retrieves the name of an attribute specified by the identifier, attr_id.
@@ -868,14 +890,13 @@ public class H5 implements java.io.Serializable {
* @return String for Attribute name.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native String H5Aget_name(long attr_id)
- throws HDF5LibraryException;
+ public synchronized static native String H5Aget_name(long attr_id) throws HDF5LibraryException;
/**
- * H5Aget_name_by_idx retrieves the name of an attribute that is attached to an object, which is specified by its
- * location and name, loc_id and obj_name, respectively.
+ * H5Aget_name_by_idx retrieves the name of an attribute that is attached to an object, which is specified
+ * by its location and name, loc_id and obj_name, respectively.
*
* @param attr_id
* IN: Attribute identifier
@@ -893,12 +914,13 @@ public class H5 implements java.io.Serializable {
* @return String for Attribute name.
*
* @exception HDF5LibraryException
- * - Error from the HDF5 Library.
+ * Error from the HDF5 Library.
* @exception NullPointerException
- * - obj_name is null.
+ * obj_name is null.
**/
- public synchronized static native String H5Aget_name_by_idx(long attr_id, String obj_name, int idx_type, int order,
- long n, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native String H5Aget_name_by_idx(long attr_id, String obj_name, int idx_type,
+ int order, long n, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aget_space retrieves a copy of the dataspace for an attribute.
@@ -909,7 +931,7 @@ public class H5 implements java.io.Serializable {
* @return attribute dataspace identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public static long H5Aget_space(long attr_id) throws HDF5LibraryException
{
@@ -925,7 +947,8 @@ public class H5 implements java.io.Serializable {
private synchronized static native long _H5Aget_space(long attr_id) throws HDF5LibraryException;
/**
- * H5Aget_storage_size returns the amount of storage that is required for the specified attribute, attr_id.
+ * H5Aget_storage_size returns the amount of storage that is required for the specified attribute,
+ * attr_id.
*
* @param attr_id
* IN: Identifier of the attribute to query.
@@ -933,7 +956,7 @@ public class H5 implements java.io.Serializable {
* @return the amount of storage size allocated for the attribute; otherwise returns 0 (zero)
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Aget_storage_size(long attr_id) throws HDF5LibraryException;
@@ -946,7 +969,7 @@ public class H5 implements java.io.Serializable {
* @return a datatype identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public static long H5Aget_type(long attr_id) throws HDF5LibraryException
{
@@ -962,8 +985,8 @@ public class H5 implements java.io.Serializable {
private synchronized static native long _H5Aget_type(long attr_id) throws HDF5LibraryException;
/**
- * H5Aopen opens an existing attribute, attr_name, that is attached to an object specified an object identifier,
- * object_id.
+ * H5Aopen opens an existing attribute, attr_name, that is attached to an object specified an object
+ * identifier, object_id.
*
* @param obj_id
* IN: Identifier for object to which attribute is attached
@@ -975,12 +998,12 @@ public class H5 implements java.io.Serializable {
* @return An attribute identifier if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - Name is null.
+ * Name is null.
**/
public static long H5Aopen(long obj_id, String attr_name, long aapl_id)
- throws HDF5LibraryException, NullPointerException
+ throws HDF5LibraryException, NullPointerException
{
long id = _H5Aopen(obj_id, attr_name, aapl_id);
if (id > 0) {
@@ -992,11 +1015,11 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Aopen(long obj_id, String attr_name, long aapl_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Aopen_by_idx opens an existing attribute that is attached to an object specified by location and name, loc_id
- * and obj_name, respectively
+ * H5Aopen_by_idx opens an existing attribute that is attached to an object specified by location and
+ * name, loc_id and obj_name, respectively
*
* @param loc_id
* IN: Location of object to which attribute is attached
@@ -1016,12 +1039,13 @@ public class H5 implements java.io.Serializable {
* @return An attribute identifier if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - Name is null.
+ * Name is null.
**/
- public static long H5Aopen_by_idx(long loc_id, String obj_name, int idx_type, int order, long n, long aapl_id,
- long lapl_id) throws HDF5LibraryException, NullPointerException
+ public static long H5Aopen_by_idx(long loc_id, String obj_name, int idx_type, int order, long n,
+ long aapl_id, long lapl_id)
+ throws HDF5LibraryException, NullPointerException
{
long id = _H5Aopen_by_idx(loc_id, obj_name, idx_type, order, n, aapl_id, lapl_id);
if (id > 0) {
@@ -1032,8 +1056,9 @@ public class H5 implements java.io.Serializable {
return id;
}
- private synchronized static native long _H5Aopen_by_idx(long loc_id, String obj_name, int idx_type, int order,
- long n, long aapl_id, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ private synchronized static native long _H5Aopen_by_idx(long loc_id, String obj_name, int idx_type,
+ int order, long n, long aapl_id, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aopen_by_name Opens an attribute for an object by object name and attribute name
@@ -1052,12 +1077,12 @@ public class H5 implements java.io.Serializable {
* @return Returns an attribute identifier if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - obj_name is null.
+ * obj_name is null.
**/
- public static long H5Aopen_by_name(long loc_id, String obj_name, String attr_name, long aapl_id, long lapl_id)
- throws HDF5LibraryException, NullPointerException
+ public static long H5Aopen_by_name(long loc_id, String obj_name, String attr_name, long aapl_id,
+ long lapl_id) throws HDF5LibraryException, NullPointerException
{
long id = _H5Aopen_by_name(loc_id, obj_name, attr_name, aapl_id, lapl_id);
if (id > 0) {
@@ -1069,7 +1094,8 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Aopen_by_name(long loc_id, String obj_name, String attr_name,
- long aapl_id, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ long aapl_id, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1087,12 +1113,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
- public synchronized static native int H5Aread(long attr_id, long mem_type_id, byte[] obj, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Aread(long attr_id, long mem_type_id, byte[] obj,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1108,11 +1135,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
- public synchronized static int H5Aread(long attr_id, long mem_type_id, byte[] buf) throws HDF5LibraryException, NullPointerException
+ public synchronized static int H5Aread(long attr_id, long mem_type_id, byte[] buf)
+ throws HDF5LibraryException, NullPointerException
{
return H5Aread(attr_id, mem_type_id, buf, true);
}
@@ -1131,11 +1159,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
- public synchronized static int H5Aread(long attr_id, long mem_type_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException
+ public synchronized static int H5Aread(long attr_id, long mem_type_id, Object obj)
+ throws HDF5Exception, HDF5LibraryException, NullPointerException
{
return H5Aread(attr_id, mem_type_id, obj, true);
}
@@ -1156,66 +1185,67 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5Exception
- * - Failure in the data conversion.
+ * Failure in the data conversion.
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null. See public synchronized static native int H5Aread( )
+ * data buffer is null. See public synchronized static native int H5Aread( )
**/
- public synchronized static int H5Aread(long attr_id, long mem_type_id, Object obj, boolean isCriticalPinning)
- throws HDF5Exception, HDF5LibraryException, NullPointerException
+ public synchronized static int H5Aread(long attr_id, long mem_type_id, Object obj,
+ boolean isCriticalPinning)
+ throws HDF5Exception, HDF5LibraryException, NullPointerException
{
- int status = -1;
+ int status = -1;
boolean is1D = false;
Class dataClass = obj.getClass();
if (!dataClass.isArray()) {
- throw (new HDF5JavaException("H5Aread: data is not an array"));
+ throw(new HDF5JavaException("H5Aread: data is not an array"));
}
String cname = dataClass.getName();
- is1D = (cname.lastIndexOf('[') == cname.indexOf('['));
- char dname = cname.charAt(cname.lastIndexOf("[") + 1);
+ is1D = (cname.lastIndexOf('[') == cname.indexOf('['));
+ char dname = cname.charAt(cname.lastIndexOf("[") + 1);
log.trace("H5Aread: cname={} is1D={} dname={}", cname, is1D, dname);
if (is1D && (dname == 'B')) {
log.trace("H5Aread_dname_B");
- status = H5Aread(attr_id, mem_type_id, (byte[]) obj, isCriticalPinning);
+ status = H5Aread(attr_id, mem_type_id, (byte[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'S')) {
log.trace("H5Aread_dname_S");
- status = H5Aread_short(attr_id, mem_type_id, (short[]) obj, isCriticalPinning);
+ status = H5Aread_short(attr_id, mem_type_id, (short[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'I')) {
log.trace("H5Aread_dname_I");
- status = H5Aread_int(attr_id, mem_type_id, (int[]) obj, isCriticalPinning);
+ status = H5Aread_int(attr_id, mem_type_id, (int[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'J')) {
log.trace("H5Aread_dname_J");
- status = H5Aread_long(attr_id, mem_type_id, (long[]) obj, isCriticalPinning);
+ status = H5Aread_long(attr_id, mem_type_id, (long[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'F')) {
log.trace("H5Aread_dname_F");
- status = H5Aread_float(attr_id, mem_type_id, (float[]) obj, isCriticalPinning);
+ status = H5Aread_float(attr_id, mem_type_id, (float[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'D')) {
log.trace("H5Aread_dname_D");
- status = H5Aread_double(attr_id, mem_type_id, (double[]) obj, isCriticalPinning);
+ status = H5Aread_double(attr_id, mem_type_id, (double[])obj, isCriticalPinning);
}
else if ((H5.H5Tdetect_class(mem_type_id, HDF5Constants.H5T_REFERENCE) &&
- (is1D && (dataClass.getComponentType() == String.class))) ||
- H5.H5Tequal(mem_type_id, HDF5Constants.H5T_STD_REF_DSETREG)) {
+ (is1D && (dataClass.getComponentType() == String.class))) ||
+ H5.H5Tequal(mem_type_id, HDF5Constants.H5T_STD_REF_DSETREG)) {
log.trace("H5Aread_reg_ref");
- status = H5Aread_reg_ref(attr_id, mem_type_id, (String[]) obj);
+ status = H5Aread_reg_ref(attr_id, mem_type_id, (String[])obj);
}
else if (is1D && (dataClass.getComponentType() == String.class)) {
log.trace("H5Aread_string type");
- status = H5Aread_string(attr_id, mem_type_id, (String[]) obj);
+ status = H5Aread_string(attr_id, mem_type_id, (String[])obj);
}
else {
// Create a data buffer to hold the data into a Java Array
HDFArray theArray = new HDFArray(obj);
- byte[] buf = theArray.emptyBytes();
+ byte[] buf = theArray.emptyBytes();
log.trace("H5Aread_else");
// This will raise an exception if there is an error
@@ -1227,7 +1257,7 @@ public class H5 implements java.io.Serializable {
}
// clean up these: assign 'null' as hint to gc()
- buf = null;
+ buf = null;
theArray = null;
}
@@ -1250,12 +1280,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
- public synchronized static native int H5Aread_double(long attr_id, long mem_type_id, double[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Aread_double(long attr_id, long mem_type_id, double[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1271,12 +1302,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static int H5Aread_double(long attr_id, long mem_type_id, double[] buf)
- throws HDF5LibraryException, NullPointerException
+ throws HDF5LibraryException, NullPointerException
{
return H5Aread_double(attr_id, mem_type_id, buf, true);
}
@@ -1297,12 +1328,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
- public synchronized static native int H5Aread_float(long attr_id, long mem_type_id, float[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Aread_float(long attr_id, long mem_type_id, float[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1318,12 +1350,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static int H5Aread_float(long attr_id, long mem_type_id, float[] buf)
- throws HDF5LibraryException, NullPointerException
+ throws HDF5LibraryException, NullPointerException
{
return H5Aread_float(attr_id, mem_type_id, buf, true);
}
@@ -1344,12 +1376,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
- public synchronized static native int H5Aread_int(long attr_id, long mem_type_id, int[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Aread_int(long attr_id, long mem_type_id, int[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1365,12 +1398,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static int H5Aread_int(long attr_id, long mem_type_id, int[] buf)
- throws HDF5LibraryException, NullPointerException
+ throws HDF5LibraryException, NullPointerException
{
return H5Aread_int(attr_id, mem_type_id, buf, true);
}
@@ -1391,12 +1424,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
- public synchronized static native int H5Aread_long(long attr_id, long mem_type_id, long[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Aread_long(long attr_id, long mem_type_id, long[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1412,12 +1446,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static int H5Aread_long(long attr_id, long mem_type_id, long[] buf)
- throws HDF5LibraryException, NullPointerException
+ throws HDF5LibraryException, NullPointerException
{
return H5Aread_long(attr_id, mem_type_id, buf, true);
}
@@ -1436,12 +1470,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5Aread_reg_ref(long attr_id, long mem_type_id, String[] buf)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1459,12 +1493,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
- public synchronized static native int H5Aread_short(long attr_id, long mem_type_id, short[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Aread_short(long attr_id, long mem_type_id, short[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1480,12 +1515,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static int H5Aread_short(long attr_id, long mem_type_id, short[] buf)
- throws HDF5LibraryException, NullPointerException
+ throws HDF5LibraryException, NullPointerException
{
return H5Aread_short(attr_id, mem_type_id, buf, true);
}
@@ -1504,12 +1539,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5AreadVL(long attr_id, long mem_type_id, Object[] buf)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1525,12 +1560,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5Aread_string(long attr_id, long mem_type_id, String[] buf)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1546,12 +1581,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5Aread_VLStrings(long attr_id, long mem_type_id, Object[] buf)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1567,16 +1602,16 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5AreadComplex(long attr_id, long mem_type_id, String[] buf)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Arename changes the name of attribute that is attached to the object specified by loc_id. The attribute named
- * old_attr_name is renamed new_attr_name.
+ * H5Arename changes the name of attribute that is attached to the object specified by loc_id. The
+ *attribute named old_attr_name is renamed new_attr_name.
*
* @param loc_id
* IN: Location or object identifier; may be dataset or group
@@ -1588,16 +1623,16 @@ public class H5 implements java.io.Serializable {
* @return A non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - Name is null.
+ * Name is null.
**/
public synchronized static native int H5Arename(long loc_id, String old_attr_name, String new_attr_name)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Arename_by_name changes the name of attribute that is attached to the object specified by loc_id and obj_name.
- * The attribute named old_attr_name is renamed new_attr_name.
+ * H5Arename_by_name changes the name of attribute that is attached to the object specified by loc_id and
+ * obj_name. The attribute named old_attr_name is renamed new_attr_name.
*
* @param loc_id
* IN: Location or object identifier; may be dataset or group
@@ -1613,12 +1648,13 @@ public class H5 implements java.io.Serializable {
* @return A non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - Name is null.
+ * Name is null.
**/
- public synchronized static native int H5Arename_by_name(long loc_id, String obj_name, String old_attr_name,
- String new_attr_name, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int
+ H5Arename_by_name(long loc_id, String obj_name, String old_attr_name, String new_attr_name, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1636,12 +1672,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
- public synchronized static native int H5Awrite(long attr_id, long mem_type_id, byte[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Awrite(long attr_id, long mem_type_id, byte[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1657,12 +1694,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
public synchronized static int H5Awrite(long attr_id, long mem_type_id, byte[] buf)
- throws HDF5LibraryException, NullPointerException
+ throws HDF5LibraryException, NullPointerException
{
return H5Awrite(attr_id, mem_type_id, buf, true);
}
@@ -1681,12 +1718,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
public synchronized static int H5Awrite(long attr_id, long mem_type_id, Object obj)
- throws HDF5Exception, HDF5LibraryException, NullPointerException
+ throws HDF5Exception, HDF5LibraryException, NullPointerException
{
return H5Awrite(attr_id, mem_type_id, obj, true);
}
@@ -1707,55 +1744,56 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5Exception
- * - Failure in the data conversion.
+ * Failure in the data conversion.
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data object is null
+ * data object is null
**/
- public synchronized static int H5Awrite(long attr_id, long mem_type_id, Object obj, boolean isCriticalPinning)
- throws HDF5Exception, HDF5LibraryException, NullPointerException
+ public synchronized static int H5Awrite(long attr_id, long mem_type_id, Object obj,
+ boolean isCriticalPinning)
+ throws HDF5Exception, HDF5LibraryException, NullPointerException
{
- int status = -1;
+ int status = -1;
boolean is1D = false;
Class dataClass = obj.getClass();
if (!dataClass.isArray()) {
- throw (new HDF5JavaException("H5Dwrite: data is not an array"));
+ throw(new HDF5JavaException("H5Dwrite: data is not an array"));
}
String cname = dataClass.getName();
- is1D = (cname.lastIndexOf('[') == cname.indexOf('['));
- char dname = cname.charAt(cname.lastIndexOf("[") + 1);
+ is1D = (cname.lastIndexOf('[') == cname.indexOf('['));
+ char dname = cname.charAt(cname.lastIndexOf("[") + 1);
if (is1D && (dname == 'B')) {
- status = H5Awrite(attr_id, mem_type_id, (byte[]) obj, isCriticalPinning);
+ status = H5Awrite(attr_id, mem_type_id, (byte[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'S')) {
- status = H5Awrite_short(attr_id, mem_type_id, (short[]) obj, isCriticalPinning);
+ status = H5Awrite_short(attr_id, mem_type_id, (short[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'I')) {
- status = H5Awrite_int(attr_id, mem_type_id, (int[]) obj, isCriticalPinning);
+ status = H5Awrite_int(attr_id, mem_type_id, (int[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'J')) {
- status = H5Awrite_long(attr_id, mem_type_id, (long[]) obj, isCriticalPinning);
+ status = H5Awrite_long(attr_id, mem_type_id, (long[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'F')) {
- status = H5Awrite_float(attr_id, mem_type_id, (float[]) obj, isCriticalPinning);
+ status = H5Awrite_float(attr_id, mem_type_id, (float[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'D')) {
- status = H5Awrite_double(attr_id, mem_type_id, (double[]) obj, isCriticalPinning);
+ status = H5Awrite_double(attr_id, mem_type_id, (double[])obj, isCriticalPinning);
}
else if (is1D && (dataClass.getComponentType() == String.class)) {
log.trace("H5Dwrite_string type");
- status = H5Awrite_string(attr_id, mem_type_id, (String[]) obj);
+ status = H5Awrite_string(attr_id, mem_type_id, (String[])obj);
}
else {
HDFArray theArray = new HDFArray(obj);
- byte[] buf = theArray.byteify();
+ byte[] buf = theArray.byteify();
- status = H5Awrite(attr_id, mem_type_id, buf);
- buf = null;
+ status = H5Awrite(attr_id, mem_type_id, buf);
+ buf = null;
theArray = null;
}
@@ -1778,12 +1816,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
- public synchronized static native int H5Awrite_double(long attr_id, long mem_type_id, double[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Awrite_double(long attr_id, long mem_type_id, double[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1799,12 +1838,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
public synchronized static int H5Awrite_double(long attr_id, long mem_type_id, double[] buf)
- throws HDF5LibraryException, NullPointerException
+ throws HDF5LibraryException, NullPointerException
{
return H5Awrite_double(attr_id, mem_type_id, buf, true);
}
@@ -1825,12 +1864,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
- public synchronized static native int H5Awrite_float(long attr_id, long mem_type_id, float[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Awrite_float(long attr_id, long mem_type_id, float[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1846,12 +1886,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
public synchronized static int H5Awrite_float(long attr_id, long mem_type_id, float[] buf)
- throws HDF5LibraryException, NullPointerException
+ throws HDF5LibraryException, NullPointerException
{
return H5Awrite_float(attr_id, mem_type_id, buf, true);
}
@@ -1872,12 +1912,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
- public synchronized static native int H5Awrite_int(long attr_id, long mem_type_id, int[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Awrite_int(long attr_id, long mem_type_id, int[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1893,12 +1934,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
public synchronized static int H5Awrite_int(long attr_id, long mem_type_id, int[] buf)
- throws HDF5LibraryException, NullPointerException
+ throws HDF5LibraryException, NullPointerException
{
return H5Awrite_int(attr_id, mem_type_id, buf, true);
}
@@ -1919,12 +1960,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
- public synchronized static native int H5Awrite_long(long attr_id, long mem_type_id, long[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Awrite_long(long attr_id, long mem_type_id, long[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1940,12 +1982,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
public synchronized static int H5Awrite_long(long attr_id, long mem_type_id, long[] buf)
- throws HDF5LibraryException, NullPointerException
+ throws HDF5LibraryException, NullPointerException
{
return H5Awrite_long(attr_id, mem_type_id, buf, true);
}
@@ -1966,12 +2008,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
- public synchronized static native int H5Awrite_short(long attr_id, long mem_type_id, short[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Awrite_short(long attr_id, long mem_type_id, short[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -1987,12 +2030,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
public synchronized static int H5Awrite_short(long attr_id, long mem_type_id, short[] buf)
- throws HDF5LibraryException, NullPointerException
+ throws HDF5LibraryException, NullPointerException
{
return H5Awrite_short(attr_id, mem_type_id, buf, true);
}
@@ -2011,12 +2054,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
public synchronized static native int H5Awrite_string(long attr_id, long mem_type_id, String[] buf)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
@@ -2032,12 +2075,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data is null.
+ * data is null.
**/
public synchronized static native int H5AwriteVL(long attr_id, long mem_type_id, Object[] buf)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Awrite_VLStrings writes a variable length String dataset, specified by its identifier attr_id, from
@@ -2055,13 +2098,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native int H5Awrite_VLStrings(long attr_id, long mem_type_id, Object[] buf)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aget_create_plist retrieves a copy of the attribute creation property list identifier.
@@ -2072,10 +2115,9 @@ public class H5 implements java.io.Serializable {
* @return identifier for the attribute's creation property list if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Aget_create_plist(long attr_id)
- throws HDF5LibraryException
+ public static long H5Aget_create_plist(long attr_id) throws HDF5LibraryException
{
long id = _H5Aget_create_plist(attr_id);
if (id > 0) {
@@ -2094,20 +2136,22 @@ public class H5 implements java.io.Serializable {
* as defined below, is passed to a user-defined function, op, which operates on that attribute.
*
* @param loc_id
- * IN: Identifier for object to which attributes are attached; may be group, dataset, or named datatype.
+ * IN: Identifier for object to which attributes are attached; may be group, dataset, or named
+ * datatype.
* @param idx_type
* IN: The type of index specified by idx_type can be one of the following:
* H5_INDEX_NAME An alphanumeric index by attribute name.
* H5_INDEX_CRT_ORDER An index by creation order.
* @param order
- * IN: The order in which the index is to be traversed, as specified by order, can be one of the following:
+ * IN: The order in which the index is to be traversed, as specified by order, can be one of
+ * the following:
* H5_ITER_INC Iteration is from beginning to end, i.e., a top-down iteration
* incrementing the index position at each step.
- * H5_ITER_DEC Iteration starts at the end of the index, i.e., a bottom-up iteration
- * decrementing the index position at each step.
- * H5_ITER_NATIVE HDF5 iterates in the fastest-available order. No information is provided
- * as to the order, but HDF5 ensures that each element in the index will be
- * visited if the iteration completes successfully.
+ * H5_ITER_DEC Iteration starts at the end of the index, i.e., a bottom-up
+ * iteration decrementing the index position at each step.
+ * H5_ITER_NATIVE HDF5 iterates in the fastest-available order. No information is
+ * provided as to the order, but HDF5 ensures that each element in
+ * the index will be visited if the iteration completes successfully.
* @param idx
* IN/OUT: Initial and returned offset within index.
* @param op
@@ -2115,16 +2159,17 @@ public class H5 implements java.io.Serializable {
* @param op_data
* IN/OUT: Pointer to any user-efined data for use by operator function.
*
- * @return returns the return value of the first operator that returns a positive value, or zero if all members were
- * processed with no operator returning non-zero.
+ * @return returns the return value of the first operator that returns a positive value, or zero if all
+ * members were processed with no operator returning non-zero.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
**/
- public synchronized static native int H5Aiterate(long loc_id, int idx_type, int order, long idx,
- H5A_iterate_cb op, H5A_iterate_t op_data) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Aiterate(long loc_id, int idx_type, int order, long idx,
+ H5A_iterate_cb op, H5A_iterate_t op_data)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Aiterate_by_name iterates over the attributes attached to the dataset or group specified with loc_id
@@ -2132,7 +2177,8 @@ public class H5 implements java.io.Serializable {
* below, is passed to a user-defined function, op, which operates on that attribute.
*
* @param loc_id
- * IN: Identifier for object to which attributes are attached; may be group, dataset, or named datatype.
+ * IN: Identifier for object to which attributes are attached; may be group, dataset, or named
+ * datatype.
* @param obj_name
* IN: Name of object, relative to location.
* @param idx_type
@@ -2140,14 +2186,15 @@ public class H5 implements java.io.Serializable {
* H5_INDEX_NAME An alphanumeric index by attribute name.
* H5_INDEX_CRT_ORDER An index by creation order.
* @param order
- * IN: The order in which the index is to be traversed, as specified by order, can be one of the following:
- * H5_ITER_INC Iteration is from beginning to end, i.e., a top-down iteration
- * incrementing the index position at each step.
- * H5_ITER_DEC Iteration starts at the end of the index, i.e., a bottom-up iteration
- * decrementing the index position at each step.
- * H5_ITER_NATIVE HDF5 iterates in the fastest-available order. No information is provided
- * as to the order, but HDF5 ensures that each element in the index will be
- * visited if the iteration completes successfully.
+ * IN: The order in which the index is to be traversed, as specified by order, can be one of
+ * the following:
+ * H5_ITER_INC Iteration is from beginning to end, i.e., a top-down
+ * iteration incrementing the index position at each step.
+ * H5_ITER_DEC Iteration starts at the end of the index, i.e., a bottom-up iteration
+ * decrementing the index position at each step.
+ * H5_ITER_NATIVE HDF5 iterates in the fastest-available order. No information is provided
+ * as to the order, but HDF5 ensures that each element in the index will be
+ * visited if the iteration completes successfully.
* @param idx
* IN/OUT: Initial and returned offset within index.
* @param op
@@ -2157,16 +2204,18 @@ public class H5 implements java.io.Serializable {
* @param lapl_id
* IN: Link access property list
*
- * @return returns the return value of the first operator that returns a positive value, or zero if all members were
- * processed with no operator returning non-zero.
+ * @return returns the return value of the first operator that returns a positive value, or zero if all
+ * members were processed with no operator returning non-zero.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
**/
- public synchronized static native int H5Aiterate_by_name(long loc_id, String obj_name, int idx_type,
- int order, long idx, H5A_iterate_cb op, H5A_iterate_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Aiterate_by_name(long loc_id, String obj_name, int idx_type,
+ int order, long idx, H5A_iterate_cb op,
+ H5A_iterate_t op_data, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
// ////////////////////////////////////////////////////////////
// //
@@ -2217,7 +2266,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native int H5Dcopy(long src_did, long dst_did) throws HDF5LibraryException;
@@ -2230,9 +2279,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static int H5Dclose(long dataset_id) throws HDF5LibraryException {
+ public static int H5Dclose(long dataset_id) throws HDF5LibraryException
+ {
if (dataset_id < 0)
return 0; // throw new HDF5LibraryException("Negative ID");
@@ -2265,12 +2315,13 @@ public class H5 implements java.io.Serializable {
* @return a dataset identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static long H5Dcreate(long loc_id, String name, long type_id, long space_id, long lcpl_id, long dcpl_id,
- long dapl_id) throws HDF5LibraryException, NullPointerException {
+ public static long H5Dcreate(long loc_id, String name, long type_id, long space_id, long lcpl_id,
+ long dcpl_id, long dapl_id) throws HDF5LibraryException, NullPointerException
+ {
long id = _H5Dcreate2(loc_id, name, type_id, space_id, lcpl_id, dcpl_id, dapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Dcreate add {}", id);
@@ -2283,11 +2334,12 @@ public class H5 implements java.io.Serializable {
/**
* H5Dcreate2 creates a new dataset named name at the location specified by loc_id.
*
- * @see public static int H5Dcreate(int loc_id, String name, int type_id, int space_id, int lcpl_id, int dcpl_id,
- * int dapl_id)
+ * @see public static int H5Dcreate(int loc_id, String name, int type_id, int space_id, int lcpl_id, int
+ * dcpl_id, int dapl_id)
**/
private synchronized static native long _H5Dcreate2(long loc_id, String name, long type_id, long space_id,
- long lcpl_id, long dcpl_id, long dapl_id) throws HDF5LibraryException, NullPointerException;
+ long lcpl_id, long dcpl_id, long dapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Dcreate_anon creates a dataset in the file specified by loc_id.
@@ -2306,10 +2358,11 @@ public class H5 implements java.io.Serializable {
* @return a dataset identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public static long H5Dcreate_anon(long loc_id, long type_id, long space_id, long dcpl_id, long dapl_id)
- throws HDF5LibraryException {
+ throws HDF5LibraryException
+ {
long id = _H5Dcreate_anon(loc_id, type_id, space_id, dcpl_id, dapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Dcreate_anon add {}", id);
@@ -2319,11 +2372,13 @@ public class H5 implements java.io.Serializable {
return id;
}
- private synchronized static native long _H5Dcreate_anon(long loc_id, long type_id, long space_id, long dcpl_id,
- long dapl_id) throws HDF5LibraryException;
+ private synchronized static native long _H5Dcreate_anon(long loc_id, long type_id, long space_id,
+ long dcpl_id, long dapl_id)
+ throws HDF5LibraryException;
/**
- * H5Dfill explicitly fills the dataspace selection in memory, space_id, with the fill value specified in fill.
+ * H5Dfill explicitly fills the dataspace selection in memory, space_id, with the fill value specified in
+ * fill.
*
* @param fill
* IN: Pointer to the fill value to be used.
@@ -2337,12 +2392,13 @@ public class H5 implements java.io.Serializable {
* IN: Dataspace describing memory buffer and containing the selection to be filled.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
**/
- public synchronized static native void H5Dfill(byte[] fill, long fill_type, byte[] buf, long buf_type, long space_id)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Dfill(byte[] fill, long fill_type, byte[] buf, long buf_type,
+ long space_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Dget_access_plist returns an identifier for a copy of the dataset access property list for a dataset.
@@ -2353,21 +2409,23 @@ public class H5 implements java.io.Serializable {
* @return a dataset access property list identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Dget_access_plist(long dset_id) throws HDF5LibraryException;
/**
- * H5Dget_create_plist returns an identifier for a copy of the dataset creation property list for a dataset.
+ * H5Dget_create_plist returns an identifier for a copy of the dataset creation property list for a
+ * dataset.
*
* @param dataset_id
* Identifier of the dataset to query.
* @return a dataset creation property list identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Dget_create_plist(long dataset_id) throws HDF5LibraryException {
+ public static long H5Dget_create_plist(long dataset_id) throws HDF5LibraryException
+ {
long id = _H5Dget_create_plist(dataset_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Dget_create_plist add {}", id);
@@ -2388,7 +2446,7 @@ public class H5 implements java.io.Serializable {
* @return the offset in bytes.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Dget_offset(long dset_id) throws HDF5LibraryException;
@@ -2401,9 +2459,10 @@ public class H5 implements java.io.Serializable {
* @return a dataspace identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Dget_space(long dataset_id) throws HDF5LibraryException {
+ public static long H5Dget_space(long dataset_id) throws HDF5LibraryException
+ {
long id = _H5Dget_space(dataset_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Dget_space add {}", id);
@@ -2424,7 +2483,7 @@ public class H5 implements java.io.Serializable {
* @return the space allocation status
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Dget_space_status(long dset_id) throws HDF5LibraryException;
@@ -2437,10 +2496,10 @@ public class H5 implements java.io.Serializable {
* @return he amount of storage space allocated for the dataset.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native long H5Dget_storage_size(long dataset_id) throws HDF5LibraryException,
- IllegalArgumentException;
+ public synchronized static native long H5Dget_storage_size(long dataset_id)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
* H5Dget_type returns an identifier for a copy of the datatype for a dataset.
@@ -2451,9 +2510,10 @@ public class H5 implements java.io.Serializable {
* @return a datatype identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Dget_type(long dataset_id) throws HDF5LibraryException {
+ public static long H5Dget_type(long dataset_id) throws HDF5LibraryException
+ {
long id = _H5Dget_type(dataset_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Dget_type add {}", id);
@@ -2466,8 +2526,8 @@ public class H5 implements java.io.Serializable {
private synchronized static native long _H5Dget_type(long dataset_id) throws HDF5LibraryException;
/**
- * H5Diterate iterates over all the data elements in the memory buffer buf, executing the callback function operator
- * once for each such data element.
+ * H5Diterate iterates over all the data elements in the memory buffer buf, executing the callback
+ * function operator once for each such data element.
*
* @param buf
* IN/OUT: Pointer to the memory containing the elements to iterate over.
@@ -2480,19 +2540,21 @@ public class H5 implements java.io.Serializable {
* @param op_data
* IN/OUT: Pointer to any user-efined data for use by operator function.
*
- * @return returns the return value of the first operator that returns a positive value, or zero if all members were
- * processed with no operator returning non-zero.
+ * @return returns the return value of the first operator that returns a positive value, or zero if all
+ * members were processed with no operator returning non-zero.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
**/
- public synchronized static native int H5Diterate(byte[] buf, long buf_type, long space_id, H5D_iterate_cb op,
- H5D_iterate_t op_data) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Diterate(byte[] buf, long buf_type, long space_id,
+ H5D_iterate_cb op, H5D_iterate_t op_data)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dopen opens the existing dataset specified by a location identifier and name, loc_id and name, respectively.
+ * H5Dopen opens the existing dataset specified by a location identifier and name, loc_id and name,
+ * respectively.
*
* @param loc_id
* IN: Location identifier
@@ -2504,11 +2566,12 @@ public class H5 implements java.io.Serializable {
* @return a dataset identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static long H5Dopen(long loc_id, String name, long dapl_id) throws HDF5LibraryException, NullPointerException
+ public static long H5Dopen(long loc_id, String name, long dapl_id)
+ throws HDF5LibraryException, NullPointerException
{
long id = _H5Dopen2(loc_id, name, dapl_id);
if (id > 0) {
@@ -2520,16 +2583,17 @@ public class H5 implements java.io.Serializable {
}
/**
- * H5Dopen2 opens the existing dataset specified by a location identifier and name, loc_id and name, respectively.
+ * H5Dopen2 opens the existing dataset specified by a location identifier and name, loc_id and name,
+ * respectively.
*
* @see public static int H5Dopen(int loc_id, String name, int dapl_id)
**/
private synchronized static native long _H5Dopen2(long loc_id, String name, long dapl_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer buf.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer buf.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2549,17 +2613,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5Dread(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, byte[] obj, boolean isCriticalPinning) throws HDF5LibraryException,
- NullPointerException;
+ long file_space_id, long xfer_plist_id, byte[] obj,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer buf.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer buf.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2577,19 +2642,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
- public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
- long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException
+ public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id,
+ long file_space_id, long xfer_plist_id, byte[] buf)
+ throws HDF5LibraryException, NullPointerException
{
return H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer buf.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer buf.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2607,19 +2673,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
- public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
- long xfer_plist_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException
+ public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id,
+ long file_space_id, long xfer_plist_id, Object obj)
+ throws HDF5Exception, HDF5LibraryException, NullPointerException
{
return H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, obj, true);
}
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * data object.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application data object.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2639,87 +2706,88 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5Exception
- * - Failure in the data conversion.
+ * Failure in the data conversion.
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data object is null.
+ * data object is null.
**/
- public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
- long xfer_plist_id, Object obj, boolean isCriticalPinning) throws HDF5Exception, HDF5LibraryException,
- NullPointerException
+ public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id,
+ long file_space_id, long xfer_plist_id, Object obj,
+ boolean isCriticalPinning)
+ throws HDF5Exception, HDF5LibraryException, NullPointerException
{
- int status = -1;
+ int status = -1;
boolean is1D = false;
Class dataClass = obj.getClass();
if (!dataClass.isArray()) {
- throw (new HDF5JavaException("H5Dread: data is not an array"));
+ throw(new HDF5JavaException("H5Dread: data is not an array"));
}
String cname = dataClass.getName();
- is1D = (cname.lastIndexOf('[') == cname.indexOf('['));
- char dname = cname.charAt(cname.lastIndexOf("[") + 1);
+ is1D = (cname.lastIndexOf('[') == cname.indexOf('['));
+ char dname = cname.charAt(cname.lastIndexOf("[") + 1);
log.trace("H5Dread: cname={} is1D={} dname={}", cname, is1D, dname);
if (is1D && (dname == 'B')) {
log.trace("H5Dread_dname_B");
- status = H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (byte[]) obj,
- isCriticalPinning);
+ status = H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (byte[])obj,
+ isCriticalPinning);
}
else if (is1D && (dname == 'S')) {
log.trace("H5Dread_dname_S");
- status = H5Dread_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (short[]) obj,
- isCriticalPinning);
+ status = H5Dread_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
+ (short[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'I')) {
log.trace("H5Dread_dname_I");
- status = H5Dread_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (int[]) obj,
- isCriticalPinning);
+ status = H5Dread_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
+ (int[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'J')) {
log.trace("H5Dread_dname_J");
- status = H5Dread_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (long[]) obj,
- isCriticalPinning);
+ status = H5Dread_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
+ (long[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'F')) {
log.trace("H5Dread_dname_F");
- status = H5Dread_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (float[]) obj,
- isCriticalPinning);
+ status = H5Dread_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
+ (float[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'D')) {
log.trace("H5Dread_dname_D");
status = H5Dread_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
- (double[]) obj, isCriticalPinning);
+ (double[])obj, isCriticalPinning);
}
else if ((H5.H5Tdetect_class(mem_type_id, HDF5Constants.H5T_REFERENCE) &&
- (is1D && (dataClass.getComponentType() == String.class))) ||
- H5.H5Tequal(mem_type_id, HDF5Constants.H5T_STD_REF_DSETREG)) {
+ (is1D && (dataClass.getComponentType() == String.class))) ||
+ H5.H5Tequal(mem_type_id, HDF5Constants.H5T_STD_REF_DSETREG)) {
log.trace("H5Dread_reg_ref");
status = H5Dread_reg_ref(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
- (String[]) obj);
+ (String[])obj);
}
else if (is1D && (dataClass.getComponentType() == String.class)) {
log.trace("H5Dread_string type");
status = H5Dread_string(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
- (String[]) obj);
+ (String[])obj);
}
else {
// Create a data buffer to hold the data into a Java Array
HDFArray theArray = new HDFArray(obj);
- byte[] buf = theArray.emptyBytes();
+ byte[] buf = theArray.emptyBytes();
log.trace("H5Dread_else");
// will raise exception if read fails
status = H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf,
- isCriticalPinning);
+ isCriticalPinning);
if (status >= 0) {
// convert the data into a Java Array
obj = theArray.arrayify(buf);
}
// clean up these: assign 'null' as hint to gc()
- buf = null;
+ buf = null;
theArray = null;
}
@@ -2727,8 +2795,8 @@ public class H5 implements java.io.Serializable {
}
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of type double.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of type double.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2748,17 +2816,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5Dread_double(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, double[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ long file_space_id, long xfer_plist_id, double[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of type double.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of type double.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2776,19 +2845,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static int H5Dread_double(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, double[] buf) throws HDF5LibraryException, NullPointerException
+ long file_space_id, long xfer_plist_id, double[] buf)
+ throws HDF5LibraryException, NullPointerException
{
return H5Dread_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of float.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of float.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2808,17 +2878,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5Dread_float(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, float[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ long file_space_id, long xfer_plist_id, float[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of float.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of float.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2836,19 +2907,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static int H5Dread_float(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, float[] buf) throws HDF5LibraryException, NullPointerException
+ long file_space_id, long xfer_plist_id, float[] buf)
+ throws HDF5LibraryException, NullPointerException
{
return H5Dread_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of int.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of int.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2868,17 +2940,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5Dread_int(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
- NullPointerException;
+ long file_space_id, long xfer_plist_id, int[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of int.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of int.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2896,19 +2969,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static int H5Dread_int(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, int[] buf) throws HDF5LibraryException, NullPointerException
+ long file_space_id, long xfer_plist_id, int[] buf)
+ throws HDF5LibraryException, NullPointerException
{
return H5Dread_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of long.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of long.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2928,17 +3002,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5Dread_long(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
- NullPointerException;
+ long file_space_id, long xfer_plist_id, long[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of long.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of long.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2956,19 +3031,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static int H5Dread_long(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, long[] buf) throws HDF5LibraryException, NullPointerException
+ long file_space_id, long xfer_plist_id, long[] buf)
+ throws HDF5LibraryException, NullPointerException
{
return H5Dread_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of string.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of string.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2986,16 +3062,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
- public synchronized static native int H5Dread_reg_ref(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Dread_reg_ref(long dataset_id, long mem_type_id,
+ long mem_space_id, long file_space_id,
+ long xfer_plist_id, String[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of short.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of short.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3015,17 +3093,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5Dread_short(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, short[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ long file_space_id, long xfer_plist_id, short[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of short.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of short.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3043,19 +3122,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static int H5Dread_short(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, short[] buf) throws HDF5LibraryException, NullPointerException
+ long file_space_id, long xfer_plist_id, short[] buf)
+ throws HDF5LibraryException, NullPointerException
{
return H5Dread_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of variable-lenght.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of variable-lenght.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3073,16 +3153,17 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5DreadVL(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException;
+ long file_space_id, long xfer_plist_id, Object[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of string.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of string.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3100,16 +3181,17 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
public synchronized static native int H5Dread_string(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException;
+ long file_space_id, long xfer_plist_id, String[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
- * memory buffer of variable-lenght strings.
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the
+ * application memory buffer of variable-lenght strings.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3127,15 +3209,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data buffer is null.
+ * data buffer is null.
**/
- public synchronized static native int H5Dread_VLStrings(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Dread_VLStrings(long dataset_id, long mem_type_id,
+ long mem_space_id, long file_space_id,
+ long xfer_plist_id, Object[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dset_extent sets the current dimensions of the chunked dataset dset_id to the sizes specified in size.
+ * H5Dset_extent sets the current dimensions of the chunked dataset dset_id to the sizes specified in
+ * size.
*
* @param dset_id
* IN: Chunked dataset identifier.
@@ -3143,17 +3228,17 @@ public class H5 implements java.io.Serializable {
* IN: Array containing the new magnitude of each dimension of the dataset.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - size is null.
+ * size is null.
**/
- public synchronized static native void H5Dset_extent(long dset_id, long size[]) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native void H5Dset_extent(long dset_id, long size[])
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dvlen_get_buf_size determines the number of bytes required to store the VL data from the dataset, using the
- * space_id for the selection in the dataset on disk and the type_id for the memory representation of the VL data in
- * memory.
+ * H5Dvlen_get_buf_size determines the number of bytes required to store the VL data from the dataset,
+ * using the space_id for the selection in the dataset on disk and the type_id for the memory
+ * representation of the VL data in memory.
*
* @param dset_id
* IN: Identifier of the dataset read from.
@@ -3165,12 +3250,12 @@ public class H5 implements java.io.Serializable {
* @return the size in bytes of the memory buffer required to store the VL data.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
**/
public synchronized static native long H5Dvlen_get_buf_size(long dset_id, long type_id, long space_id)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
* H5Dvlen_reclaim reclaims buffer used for VL data.
@@ -3187,19 +3272,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
*
* @deprecated As of HDF5 1.12.0 in favor of H5Treclaim
**/
@Deprecated
- public synchronized static native int H5Dvlen_reclaim(long type_id, long space_id, long xfer_plist_id, byte[] buf)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Dvlen_reclaim(long type_id, long space_id, long xfer_plist_id,
+ byte[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3219,17 +3305,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, byte[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
- NullPointerException;
+ long file_space_id, long xfer_plist_id, byte[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3247,19 +3334,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
- long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException
+ public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id,
+ long file_space_id, long xfer_plist_id, byte[] buf)
+ throws HDF5LibraryException, NullPointerException
{
return H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3277,19 +3365,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
- long xfer_plist_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException
+ public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id,
+ long file_space_id, long xfer_plist_id, Object obj)
+ throws HDF5Exception, HDF5LibraryException, NullPointerException
{
return H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, obj, true);
}
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory data
- * object into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory data object into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3309,67 +3398,68 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5Exception
- * - Failure in the data conversion.
+ * Failure in the data conversion.
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - data object is null.
+ * data object is null.
**/
- public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
- long xfer_plist_id, Object obj, boolean isCriticalPinning) throws HDF5Exception, HDF5LibraryException,
- NullPointerException
+ public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id,
+ long file_space_id, long xfer_plist_id, Object obj,
+ boolean isCriticalPinning)
+ throws HDF5Exception, HDF5LibraryException, NullPointerException
{
- int status = -1;
+ int status = -1;
boolean is1D = false;
Class dataClass = obj.getClass();
if (!dataClass.isArray()) {
- throw (new HDF5JavaException("H5Dwrite: data is not an array"));
+ throw(new HDF5JavaException("H5Dwrite: data is not an array"));
}
String cname = dataClass.getName();
- is1D = (cname.lastIndexOf('[') == cname.indexOf('['));
- char dname = cname.charAt(cname.lastIndexOf("[") + 1);
+ is1D = (cname.lastIndexOf('[') == cname.indexOf('['));
+ char dname = cname.charAt(cname.lastIndexOf("[") + 1);
if (is1D && (dname == 'B')) {
- status = H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (byte[]) obj,
- isCriticalPinning);
+ status = H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
+ (byte[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'S')) {
- status = H5Dwrite_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (short[]) obj,
- isCriticalPinning);
+ status = H5Dwrite_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
+ (short[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'I')) {
- status = H5Dwrite_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (int[]) obj,
- isCriticalPinning);
+ status = H5Dwrite_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
+ (int[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'J')) {
- status = H5Dwrite_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (long[]) obj,
- isCriticalPinning);
+ status = H5Dwrite_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
+ (long[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'F')) {
- status = H5Dwrite_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (float[]) obj,
- isCriticalPinning);
+ status = H5Dwrite_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
+ (float[])obj, isCriticalPinning);
}
else if (is1D && (dname == 'D')) {
status = H5Dwrite_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
- (double[]) obj, isCriticalPinning);
+ (double[])obj, isCriticalPinning);
}
else if (is1D && (dataClass.getComponentType() == String.class)) {
log.trace("H5Dwrite_string type");
status = H5Dwrite_string(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
- (String[]) obj);
+ (String[])obj);
}
else {
HDFArray theArray = new HDFArray(obj);
- byte[] buf = theArray.byteify();
+ byte[] buf = theArray.byteify();
// will raise exception on error
status = H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf,
- isCriticalPinning);
+ isCriticalPinning);
// clean up these: assign 'null' as hint to gc()
- buf = null;
+ buf = null;
theArray = null;
}
@@ -3377,8 +3467,8 @@ public class H5 implements java.io.Serializable {
}
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3398,17 +3488,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native int H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, double[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int
+ H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
+ long xfer_plist_id, double[] buf, boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3426,19 +3517,21 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static int H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, double[] buf) throws HDF5LibraryException, NullPointerException
+ long file_space_id, long xfer_plist_id, double[] buf)
+ throws HDF5LibraryException, NullPointerException
{
- return H5Dwrite_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
+ return H5Dwrite_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf,
+ true);
}
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3458,17 +3551,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native int H5Dwrite_float(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, float[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ long file_space_id, long xfer_plist_id, float[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3486,19 +3580,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static int H5Dwrite_float(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, float[] buf) throws HDF5LibraryException, NullPointerException
+ long file_space_id, long xfer_plist_id, float[] buf)
+ throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3518,17 +3613,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native int H5Dwrite_int(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
- NullPointerException;
+ long file_space_id, long xfer_plist_id, int[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3546,19 +3642,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static int H5Dwrite_int(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, int[] buf) throws HDF5LibraryException, NullPointerException
+ long file_space_id, long xfer_plist_id, int[] buf)
+ throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3578,17 +3675,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native int H5Dwrite_long(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
- NullPointerException;
+ long file_space_id, long xfer_plist_id, long[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3606,19 +3704,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static int H5Dwrite_long(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, long[] buf) throws HDF5LibraryException, NullPointerException
+ long file_space_id, long xfer_plist_id, long[] buf)
+ throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3638,17 +3737,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native int H5Dwrite_short(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, short[] buf, boolean isCriticalPinning)
- throws HDF5LibraryException, NullPointerException;
+ long file_space_id, long xfer_plist_id, short[] buf,
+ boolean isCriticalPinning)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3666,19 +3766,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static int H5Dwrite_short(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, short[] buf) throws HDF5LibraryException, NullPointerException
+ long file_space_id, long xfer_plist_id, short[] buf)
+ throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3696,16 +3797,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native int H5Dwrite_string(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Dwrite_string(long dataset_id, long mem_type_id,
+ long mem_space_id, long file_space_id,
+ long xfer_plist_id, String[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * into the file.
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application
+ * memory buffer into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -3723,16 +3826,17 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native int H5DwriteVL(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException;
+ long file_space_id, long xfer_plist_id, Object[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dwrite_VLStrings writes a (partial) variable length String dataset, specified by its identifier dataset_id, from
- * the application memory buffer buf into the file.
+ * H5Dwrite_VLStrings writes a (partial) variable length String dataset, specified by its identifier
+ * dataset_id, from the application memory buffer buf into the file.
*
* ---- contributed by Rosetta Biosoftware
*
@@ -3752,48 +3856,52 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native int H5Dwrite_VLStrings(long dataset_id, long mem_type_id, long mem_space_id,
- long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Dwrite_VLStrings(long dataset_id, long mem_type_id,
+ long mem_space_id, long file_space_id,
+ long xfer_plist_id, Object[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Dflush causes all buffers associated with a dataset to be immediately flushed to disk without removing the
- * data from the cache.
+ * H5Dflush causes all buffers associated with a dataset to be immediately flushed to disk without
+ * removing the data from the cache.
*
* @param dset_id
* IN: Identifier of the dataset to be flushed.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Dflush(long dset_id) throws HDF5LibraryException;
/**
- * H5Drefresh causes all buffers associated with a dataset to be cleared and immediately re-loaded with updated
- * contents from disk. This function essentially closes the dataset, evicts all metadata associated with it
- * from the cache, and then re-opens the dataset. The reopened dataset is automatically re-registered with the same ID.
+ * H5Drefresh causes all buffers associated with a dataset to be cleared and immediately re-loaded with
+ * updated contents from disk. This function essentially closes the dataset, evicts all metadata
+ * associated with it from the cache, and then re-opens the dataset. The reopened dataset is automatically
+ * re-registered with the same ID.
*
* @param dset_id
* IN: Identifier of the dataset to be refreshed.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Drefresh(long dset_id) throws HDF5LibraryException;
// /////// unimplemented ////////
- // herr_t H5Ddebug(hid_t dset_id);
- // herr_t H5Dget_chunk_storage_size(hid_t dset_id, const hsize_t *offset, hsize_t *chunk_bytes);
- // herr_t H5Dformat_convert(hid_t dset_id);
- // herr_t H5Dget_chunk_index_type(hid_t did, H5D_chunk_index_t *idx_type);
+ // herr_t H5Ddebug(hid_t dset_id);
+ // herr_t H5Dget_chunk_storage_size(hid_t dset_id, const hsize_t *offset, hsize_t *chunk_bytes);
+ // herr_t H5Dformat_convert(hid_t dset_id);
+ // herr_t H5Dget_chunk_index_type(hid_t did, H5D_chunk_index_t *idx_type);
// herr_t H5Dgather(hid_t src_space_id, const void *src_buf, hid_t type_id,
// size_t dst_buf_size, void *dst_buf, H5D_gather_func_t op, void *op_data);
- // herr_t H5Dscatter(H5D_scatter_func_t op, void *op_data, hid_t type_id, hid_t dst_space_id, void *dst_buf);
+ // herr_t H5Dscatter(H5D_scatter_func_t op, void *op_data, hid_t type_id, hid_t dst_space_id, void
+ // *dst_buf);
// ////////////////////////////////////////////////////////////
// //
@@ -3802,58 +3910,57 @@ public class H5 implements java.io.Serializable {
// ////////////////////////////////////////////////////////////
/**
- * H5Eauto_is_v2 determines whether the error auto reporting function for an error stack conforms to the H5E_auto2_t
- * typedef or the H5E_auto1_t typedef.
+ * H5Eauto_is_v2 determines whether the error auto reporting function for an error stack conforms to the
+ * H5E_auto2_t typedef or the H5E_auto1_t typedef.
*
* @param stack_id
* IN: Error stack identifier.
*
- * @return boolean true if the error stack conforms to H5E_auto2_t and false if it conforms to H5E_auto1_t.
+ * @return boolean true if the error stack conforms to H5E_auto2_t and false if it conforms to
+ * H5E_auto1_t.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native boolean H5Eauto_is_v2(long stack_id) throws HDF5LibraryException;
/**
- * H5Eclear clears the error stack for the current thread. H5Eclear can fail if there are problems initializing the
- * library.
- * <p>
- * This may be used by exception handlers to assure that the error condition in the HDF-5 library has been reset.
+ * H5Eclear clears the error stack for the current thread. H5Eclear can fail if there are problems
+ * initializing the library. <p> This may be used by exception handlers to assure that the error condition
+ * in the HDF-5 library has been reset.
*
* @return Returns a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static int H5Eclear() throws HDF5LibraryException {
+ public static int H5Eclear() throws HDF5LibraryException
+ {
H5Eclear2(HDF5Constants.H5E_DEFAULT);
return 0;
}
/**
- * H5Eclear clears the error stack specified by estack_id, or, if estack_id is set to H5E_DEFAULT, the error stack
- * for the current thread.
+ * H5Eclear clears the error stack specified by estack_id, or, if estack_id is set to H5E_DEFAULT, the
+ * error stack for the current thread.
*
* @param stack_id
* IN: Error stack identifier.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static void H5Eclear(long stack_id) throws HDF5LibraryException {
- H5Eclear2(stack_id);
- }
+ public static void H5Eclear(long stack_id) throws HDF5LibraryException { H5Eclear2(stack_id); }
/**
- * H5Eclear2 clears the error stack specified by estack_id, or, if estack_id is set to H5E_DEFAULT, the error stack
- * for the current thread.
+ * H5Eclear2 clears the error stack specified by estack_id, or, if estack_id is set to H5E_DEFAULT, the
+ * error stack for the current thread.
*
* @param stack_id
* IN: Error stack identifier.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Eclear2(long stack_id) throws HDF5LibraryException;
@@ -3864,7 +3971,7 @@ public class H5 implements java.io.Serializable {
* IN: Error message identifier.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Eclose_msg(long err_id) throws HDF5LibraryException;
@@ -3875,7 +3982,7 @@ public class H5 implements java.io.Serializable {
* IN: Error stack identifier.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Eclose_stack(long stack_id) throws HDF5LibraryException;
@@ -3892,12 +3999,12 @@ public class H5 implements java.io.Serializable {
* @return a message identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - msg is null.
+ * msg is null.
**/
public synchronized static native long H5Ecreate_msg(long cls_id, int msg_type, String msg)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Ecreate_stack creates a new empty error stack and returns the new stack's identifier.
@@ -3905,7 +4012,7 @@ public class H5 implements java.io.Serializable {
* @return an error stack identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Ecreate_stack() throws HDF5LibraryException;
@@ -3918,30 +4025,31 @@ public class H5 implements java.io.Serializable {
* @return the name of the error class
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native String H5Eget_class_name(long class_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Eget_current_stack copies the current error stack and returns an error stack identifier for the new copy.
+ * H5Eget_current_stack copies the current error stack and returns an error stack identifier for the new
+ * copy.
*
* @return an error stack identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Eget_current_stack() throws HDF5LibraryException;
/**
- * H5Eset_current_stack replaces the content of the current error stack with a copy of the content of the error
- * stack specified by estack_id.
+ * H5Eset_current_stack replaces the content of the current error stack with a copy of the content of the
+ * error stack specified by estack_id.
*
* @param stack_id
* IN: Error stack identifier.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Eset_current_stack(long stack_id) throws HDF5LibraryException;
@@ -3956,13 +4064,14 @@ public class H5 implements java.io.Serializable {
* @return the error message
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native String H5Eget_msg(long msg_id, int[] type_list) throws HDF5LibraryException;
+ public synchronized static native String H5Eget_msg(long msg_id, int[] type_list)
+ throws HDF5LibraryException;
/**
- * H5Eget_num retrieves the number of error records in the error stack specified by estack_id (including major,
- * minor messages and description).
+ * H5Eget_num retrieves the number of error records in the error stack specified by estack_id (including
+ * major, minor messages and description).
*
* @param stack_id
* IN: Error stack identifier.
@@ -3970,26 +4079,29 @@ public class H5 implements java.io.Serializable {
* @return the number of error messages
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native long H5Eget_num(long stack_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native long H5Eget_num(long stack_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Eprint2 prints the error stack specified by estack_id on the specified stream, stream.
*
* @param stack_id
- * IN: Error stack identifier.If the identifier is H5E_DEFAULT, the current error stack will be printed.
+ * IN: Error stack identifier.If the identifier is H5E_DEFAULT, the current error stack will be
+ * printed.
* @param stream
* IN: File pointer, or stderr if null.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Eprint2(long stack_id, Object stream) throws HDF5LibraryException;
+ public synchronized static native void H5Eprint2(long stack_id, Object stream)
+ throws HDF5LibraryException;
/**
- * H5Epop deletes the number of error records specified in count from the top of the error stack specified by
- * estack_id (including major, minor messages and description).
+ * H5Epop deletes the number of error records specified in count from the top of the error stack specified
+ * by estack_id (including major, minor messages and description).
*
* @param stack_id
* IN: Error stack identifier.
@@ -3997,11 +4109,10 @@ public class H5 implements java.io.Serializable {
* IN: Version of the client library or application to which the error class belongs.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Epop(long stack_id, long count) throws HDF5LibraryException;
-
/**
* H5Epush pushes a new error record onto the error stack specified by estack_id.
*
@@ -4023,14 +4134,14 @@ public class H5 implements java.io.Serializable {
* IN: Error description string.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - file, func, or msg is null.
- **/
- public static void H5Epush(long stack_id, String file, String func, int line,
- long cls_id, long maj_id, long min_id, String msg) throws HDF5LibraryException, NullPointerException
+ * file, func, or msg is null.
+ **/
+ public static void H5Epush(long stack_id, String file, String func, int line, long cls_id, long maj_id,
+ long min_id, String msg) throws HDF5LibraryException, NullPointerException
{
- H5Epush2(stack_id, file, func, line, cls_id, maj_id, min_id, msg);
+ H5Epush2(stack_id, file, func, line, cls_id, maj_id, min_id, msg);
}
/**
* H5Epush2 pushes a new error record onto the error stack specified by estack_id.
@@ -4053,16 +4164,17 @@ public class H5 implements java.io.Serializable {
* IN: Error description string.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - file, func, or msg is null.
- **/
+ * file, func, or msg is null.
+ **/
public synchronized static native void H5Epush2(long stack_id, String file, String func, int line,
- long cls_id, long maj_id, long min_id, String msg) throws HDF5LibraryException, NullPointerException;
+ long cls_id, long maj_id, long min_id, String msg)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Eregister_class registers a client library or application program to the HDF5 error API so that the client
- * library or application program can report errors together with HDF5 library.
+ * H5Eregister_class registers a client library or application program to the HDF5 error API so that the
+ * client library or application program can report errors together with HDF5 library.
*
* @param cls_name
* IN: Name of the error class.
@@ -4074,12 +4186,12 @@ public class H5 implements java.io.Serializable {
* @return a class identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native long H5Eregister_class(String cls_name, String lib_name, String version)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Eunregister_class removes the error class specified by class_id.
@@ -4088,7 +4200,7 @@ public class H5 implements java.io.Serializable {
* IN: Error class identifier.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Eunregister_class(long class_id) throws HDF5LibraryException;
@@ -4106,13 +4218,14 @@ public class H5 implements java.io.Serializable {
* IN: Data to be passed with func.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - func is null.
+ * func is null.
**/
- public static void H5Ewalk(long stack_id, long direction, H5E_walk_cb func, H5E_walk_t client_data) throws HDF5LibraryException, NullPointerException
+ public static void H5Ewalk(long stack_id, long direction, H5E_walk_cb func, H5E_walk_t client_data)
+ throws HDF5LibraryException, NullPointerException
{
- H5Ewalk2(stack_id, direction, func, client_data);
+ H5Ewalk2(stack_id, direction, func, client_data);
}
/**
* H5Ewalk2 walks the error stack specified by estack_id for the current thread and calls the
@@ -4128,12 +4241,13 @@ public class H5 implements java.io.Serializable {
* IN: Data to be passed with func.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - func is null.
+ * func is null.
**/
- public synchronized static native void H5Ewalk2(long stack_id, long direction, H5E_walk_cb func, H5E_walk_t client_data)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Ewalk2(long stack_id, long direction, H5E_walk_cb func,
+ H5E_walk_t client_data)
+ throws HDF5LibraryException, NullPointerException;
// /////// unimplemented ////////
// public interface H5E_auto2_t extends Callback
@@ -4176,9 +4290,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static int H5Fclose(long file_id) throws HDF5LibraryException {
+ public static int H5Fclose(long file_id) throws HDF5LibraryException
+ {
if (file_id < 0)
return 0; // throw new HDF5LibraryException("Negative ID");;
@@ -4203,12 +4318,13 @@ public class H5 implements java.io.Serializable {
* @return a file identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static long H5Fopen(String name, int flags, long access_id) throws HDF5LibraryException,
- NullPointerException {
+ public static long H5Fopen(String name, int flags, long access_id)
+ throws HDF5LibraryException, NullPointerException
+ {
long id = _H5Fopen(name, flags, access_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Fopen add {}", id);
@@ -4219,7 +4335,7 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Fopen(String name, int flags, long access_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Freopen reopens an HDF5 file.
@@ -4227,11 +4343,13 @@ public class H5 implements java.io.Serializable {
* @param file_id
* Identifier of a file to terminate and reopen access to.
*
- * @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
* @return a new file identifier if successful
+ *
+ * @exception HDF5LibraryException
+ * Error from the HDF-5 Library.
**/
- public static long H5Freopen(long file_id) throws HDF5LibraryException {
+ public static long H5Freopen(long file_id) throws HDF5LibraryException
+ {
long id = _H5Freopen(file_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Freopen add {}", id);
@@ -4256,7 +4374,8 @@ public class H5 implements java.io.Serializable {
* <LI>
* H5F_ACC_RDONLY Allow read-only access to file.</LI>
* <LI>
- * H5F_ACC_TRUNC Truncate file, if it already exists, erasing all data previously stored in the file.</LI>
+ * H5F_ACC_TRUNC Truncate file, if it already exists, erasing all data previously stored in the
+ * file.</LI>
* <LI>
* H5F_ACC_EXCL Fail if file already exists.</LI>
* <LI>
@@ -4264,22 +4383,23 @@ public class H5 implements java.io.Serializable {
* </UL>
*
* @param create_id
- * File creation property list identifier, used when modifying default file meta-data. Use H5P_DEFAULT
- * for default access properties.
+ * File creation property list identifier, used when modifying default file meta-data. Use
+ * H5P_DEFAULT for default access properties.
* @param access_id
- * File access property list identifier. If parallel file access is desired, this is a collective call
- * according to the communicator stored in the access_id (not supported in Java). Use H5P_DEFAULT for
- * default access properties.
+ * File access property list identifier. If parallel file access is desired, this is a
+ * collective call according to the communicator stored in the access_id (not supported
+ * in Java). Use H5P_DEFAULT for default access properties.
*
* @return a file identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static long H5Fcreate(String name, int flags, long create_id, long access_id) throws HDF5LibraryException,
- NullPointerException {
+ public static long H5Fcreate(String name, int flags, long create_id, long access_id)
+ throws HDF5LibraryException, NullPointerException
+ {
long id = _H5Fcreate(name, flags, create_id, access_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Fcreate add {}", id);
@@ -4290,34 +4410,30 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Fcreate(String name, int flags, long create_id, long access_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Fflush causes all buffers associated with a file or object to be immediately flushed (written) to disk without
- * removing the data from the (memory) cache.
- * <P>
- * After this call completes, the file (or object) is in a consistent state and all data written to date is assured
- * to be permanent.
+ * H5Fflush causes all buffers associated with a file or object to be immediately flushed (written) to
+ * disk without removing the data from the (memory) cache. <P> After this call completes, the file (or
+ * object) is in a consistent state and all data written to date is assured to be permanent.
*
* @param object_id
- * Identifier of object used to identify the file. <b>object_id</b> can be any object associated with the
- * file, including the file itself, a dataset, a group, an attribute, or a named data type.
+ * Identifier of object used to identify the file. <b>object_id</b> can be any object
+ * associated with the file, including the file itself, a dataset, a group, an attribute,
+ * or a named data type.
* @param scope
- * specifies the scope of the flushing action, in the case that the HDF-5 file is not a single physical
- * file.
- * <P>
- * Valid values are:
+ * specifies the scope of the flushing action, in the case that the HDF-5 file is not a single
+ * physical file.
+ * <P> Valid values are:
* <UL>
- * <LI>
- * H5F_SCOPE_GLOBAL Flushes the entire virtual file.</LI>
- * <LI>
- * H5F_SCOPE_LOCAL Flushes only the specified file.</LI>
+ * <LI> H5F_SCOPE_GLOBAL Flushes the entire virtual file.</LI>
+ * <LI> H5F_SCOPE_LOCAL Flushes only the specified file.</LI>
* </UL>
*
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Fflush(long object_id, int scope) throws HDF5LibraryException;
@@ -4330,9 +4446,10 @@ public class H5 implements java.io.Serializable {
* @return a file access property list identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Fget_access_plist(long file_id) throws HDF5LibraryException {
+ public static long H5Fget_access_plist(long file_id) throws HDF5LibraryException
+ {
long id = _H5Fget_access_plist(file_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Fget_access_plist add {}", id);
@@ -4345,8 +4462,8 @@ public class H5 implements java.io.Serializable {
private synchronized static native long _H5Fget_access_plist(long file_id) throws HDF5LibraryException;
/**
- * H5Fget_create_plist returns a file creation property list identifier identifying the creation properties used to
- * create this file.
+ * H5Fget_create_plist returns a file creation property list identifier identifying the creation
+ * properties used to create this file.
*
* @param file_id
* Identifier of the file to get creation property list
@@ -4354,9 +4471,10 @@ public class H5 implements java.io.Serializable {
* @return a file creation property list identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Fget_create_plist(long file_id) throws HDF5LibraryException {
+ public static long H5Fget_create_plist(long file_id) throws HDF5LibraryException
+ {
long id = _H5Fget_create_plist(file_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Fget_create_plist add {}", id);
@@ -4379,7 +4497,7 @@ public class H5 implements java.io.Serializable {
* @return the file size of the HDF5 file
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Fget_filesize(long file_id) throws HDF5LibraryException;
@@ -4392,7 +4510,7 @@ public class H5 implements java.io.Serializable {
* @return the amount of free space in the file
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Fget_freespace(long file_id) throws HDF5LibraryException;
@@ -4405,7 +4523,7 @@ public class H5 implements java.io.Serializable {
* @return the intended access mode flag, as originally passed with H5Fopen.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Fget_intent(long file_id) throws HDF5LibraryException;
@@ -4418,13 +4536,13 @@ public class H5 implements java.io.Serializable {
* @return the unique file number for the file.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Fget_fileno(long file_id) throws HDF5LibraryException;
/**
- * H5Fget_mdc_hit_rate queries the metadata cache of the target file to obtain its hit rate (cache hits / (cache
- * hits + cache misses)) since the last time hit rate statistics were reset.
+ * H5Fget_mdc_hit_rate queries the metadata cache of the target file to obtain its hit rate (cache hits /
+ * (cache hits + cache misses)) since the last time hit rate statistics were reset.
*
* @param file_id
* IN: Identifier of the target file.
@@ -4432,7 +4550,7 @@ public class H5 implements java.io.Serializable {
* @return the double in which the hit rate is returned.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native double H5Fget_mdc_hit_rate(long file_id) throws HDF5LibraryException;
@@ -4452,12 +4570,12 @@ public class H5 implements java.io.Serializable {
* @return current number of entries in the cache
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - metadata_cache is null.
+ * metadata_cache is null.
**/
public synchronized static native int H5Fget_mdc_size(long file_id, long[] metadata_cache)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Fget_name retrieves the name of the file to which the object obj_id belongs.
@@ -4468,7 +4586,7 @@ public class H5 implements java.io.Serializable {
* @return the filename.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native String H5Fget_name(long obj_id) throws HDF5LibraryException;
@@ -4492,12 +4610,14 @@ public class H5 implements java.io.Serializable {
* @return the number of open objects.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native long H5Fget_obj_count(long file_id, int types) throws HDF5LibraryException;
+ public synchronized static native long H5Fget_obj_count(long file_id, int types)
+ throws HDF5LibraryException;
/**
- * H5Fget_obj_ids returns the list of identifiers for all open HDF5 objects fitting the specified criteria.
+ * H5Fget_obj_ids returns the list of identifiers for all open HDF5 objects fitting the specified
+ * criteria.
*
* @param file_id
* IN: File identifier for a currently-open HDF5 file
@@ -4511,12 +4631,13 @@ public class H5 implements java.io.Serializable {
* @return the number of objects placed into obj_id_list.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - obj_id_list is null.
+ * obj_id_list is null.
**/
- public synchronized static native long H5Fget_obj_ids(long file_id, int types, long max_objs, long[] obj_id_list)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native long H5Fget_obj_ids(long file_id, int types, long max_objs,
+ long[] obj_id_list)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Fis_hdf5 determines whether a file is in the HDF5 format.
@@ -4527,14 +4648,15 @@ public class H5 implements java.io.Serializable {
* @return true if is HDF-5, false if not.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
*
* @deprecated As of HDF5 1.10.5 in favor of H5Fis_accessible.
**/
@Deprecated
- public synchronized static native boolean H5Fis_hdf5(String name) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native boolean H5Fis_hdf5(String name)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Fis_accessible determines if the file can be opened with the given fapl.
@@ -4547,15 +4669,16 @@ public class H5 implements java.io.Serializable {
* @return true if file is accessible, false if not.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native boolean H5Fis_accessible(String name, long file_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native boolean H5Fis_accessible(String name, long file_id)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Fmount mounts the file specified by child_id onto the group specified by loc_id and name using the mount
- * properties plist_id.
+ * H5Fmount mounts the file specified by child_id onto the group specified by loc_id and name using the
+ * mount properties plist_id.
*
* @param loc_id
* The identifier for the group onto which the file specified by child_id is to be mounted.
@@ -4569,12 +4692,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native int H5Fmount(long loc_id, String name, long child_id, long plist_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* Given a mount point, H5Funmount disassociates the mount point's file from the file mounted there.
@@ -4587,24 +4710,25 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native int H5Funmount(long loc_id, String name) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Funmount(long loc_id, String name)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Freset_mdc_hit_rate_stats resets the hit rate statistics counters in the metadata cache associated with the
- * specified file.
+ * H5Freset_mdc_hit_rate_stats resets the hit rate statistics counters in the metadata cache associated
+ * with the specified file.
*
* @param file_id
* IN: Identifier of the target file.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Freset_mdc_hit_rate_stats(long file_id) throws HDF5LibraryException;
+ public synchronized static native void H5Freset_mdc_hit_rate_stats(long file_id)
+ throws HDF5LibraryException;
/**
* H5Fget_info returns global information for the file associated with the
@@ -4614,7 +4738,8 @@ public class H5 implements java.io.Serializable {
*
* @return A buffer(H5F_info2_t) for current "global" information about file
*
- * @exception HDF5LibraryException - Error from the HDF-5 Library.
+ * @exception HDF5LibraryException
+ * Error from the HDF-5 Library.
**/
public synchronized static native H5F_info2_t H5Fget_info(long obj_id) throws HDF5LibraryException;
@@ -4626,19 +4751,20 @@ public class H5 implements java.io.Serializable {
* IN: Identifier of the target file.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Fclear_elink_file_cache(long file_id) throws HDF5LibraryException;
+ public synchronized static native void H5Fclear_elink_file_cache(long file_id)
+ throws HDF5LibraryException;
/**
- * H5Fstart_swmr_write will activate SWMR writing mode for a file associated with file_id. This routine will
- * prepare and ensure the file is safe for SWMR writing.
+ * H5Fstart_swmr_write will activate SWMR writing mode for a file associated with file_id. This routine
+ * will prepare and ensure the file is safe for SWMR writing.
*
* @param file_id
* IN: Identifier of the target file.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Fstart_swmr_write(long file_id) throws HDF5LibraryException;
@@ -4649,18 +4775,19 @@ public class H5 implements java.io.Serializable {
* IN: Identifier of the target file.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Fstart_mdc_logging(long file_id) throws HDF5LibraryException;
/**
- * H5Fstop_mdc_logging stops logging metadata cache events if logging was previously enabled and is currently ongoing.
+ * H5Fstop_mdc_logging stops logging metadata cache events if logging was previously enabled and is
+ * currently ongoing.
*
* @param file_id
* IN: Identifier of the target file.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Fstop_mdc_logging(long file_id) throws HDF5LibraryException;
@@ -4676,12 +4803,13 @@ public class H5 implements java.io.Serializable {
* mdc_logging_status[1] = is_currently_logging, whether events are currently being logged
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - mdc_logging_status is null.
+ * mdc_logging_status is null.
**/
- public synchronized static native void H5Fget_mdc_logging_status(long file_id, boolean[] mdc_logging_status)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Fget_mdc_logging_status(long file_id,
+ boolean[] mdc_logging_status)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Fget_dset_no_attrs_hint gets the file-level setting to create minimized dataset object headers.
@@ -4692,11 +4820,10 @@ public class H5 implements java.io.Serializable {
* @return true if the file-level is set to create minimized dataset object headers, false if not.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native boolean H5Fget_dset_no_attrs_hint(long file_id)
- throws HDF5LibraryException;
-
+ throws HDF5LibraryException;
/**
* H5Fset_dset_no_attrs_hint sets the file-level setting to create minimized dataset object headers.
@@ -4704,14 +4831,13 @@ public class H5 implements java.io.Serializable {
* @param file_id
* IN: Identifier of the target file.
* @param minimize
- * the minimize hint setting
+ * the minimize hint setting
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Fset_dset_no_attrs_hint(long file_id, boolean minimize)
- throws HDF5LibraryException;
-
+ throws HDF5LibraryException;
/**
* H5Fset_libver_bounds sets a different low and high bounds while a file is open.
@@ -4724,17 +4850,18 @@ public class H5 implements java.io.Serializable {
* IN: The latest version of the library that will be used for writing objects.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Fset_libver_bounds(long file_id, int low, int high)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
// /////// unimplemented ////////
// herr_t H5Fget_eoa(hid_t file_id, haddr_t *eoa);
// herr_t H5Fincrement_filesize(hid_t file_id, hsize_t increment);
// ssize_t H5Fget_file_image(hid_t file_id, void * buf_ptr, size_t buf_len);
// herr_t H5Fget_metadata_read_retry_info(hid_t file_id, H5F_retry_info_t *info);
- // ssize_t H5Fget_free_sections(hid_t file_id, H5F_mem_t type, size_t nsects, H5F_sect_info_t *sect_info/*out*/);
+ // ssize_t H5Fget_free_sections(hid_t file_id, H5F_mem_t type, size_t nsects, H5F_sect_info_t
+ // *sect_info/*out*/);
// herr_t H5Fformat_convert(hid_t fid);
// herr_t H5Freset_page_buffering_stats(hid_t file_id);
// herr_t H5Fget_page_buffering_stats(hid_t file_id, unsigned accesses[2],
@@ -4814,11 +4941,10 @@ public class H5 implements java.io.Serializable {
// herr_t H5FDset_eoa(H5FD_t *file, H5FD_mem_t type, haddr_t eoa);
// haddr_t H5FDget_eof(H5FD_t *file, H5FD_mem_t type);
// herr_t H5FDget_vfd_handle(H5FD_t *file, hid_t fapl, void**file_handle);
- // herr_t H5FDread(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, void *buf/*out*/);
- // herr_t H5FDwrite(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, const void *buf);
- // herr_t H5FDflush(H5FD_t *file, hid_t dxpl_id, hbool_t closing);
- // herr_t H5FDtruncate(H5FD_t *file, hid_t dxpl_id, hbool_t closing);
- // herr_t H5FDlock(H5FD_t *file, hbool_t rw);
+ // herr_t H5FDread(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, void
+ // *buf/*out*/); herr_t H5FDwrite(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t
+ // size, const void *buf); herr_t H5FDflush(H5FD_t *file, hid_t dxpl_id, hbool_t closing); herr_t
+ // H5FDtruncate(H5FD_t *file, hid_t dxpl_id, hbool_t closing); herr_t H5FDlock(H5FD_t *file, hbool_t rw);
// herr_t H5FDunlock(H5FD_t *file);
// herr_t H5FDdriver_query(hid_t driver_id, unsigned long *flags/*out*/);
@@ -4845,9 +4971,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static int H5Gclose(long group_id) throws HDF5LibraryException {
+ public static int H5Gclose(long group_id) throws HDF5LibraryException
+ {
if (group_id < 0)
return 0; // throw new HDF5LibraryException("Negative ID");;
@@ -4871,18 +4998,19 @@ public class H5 implements java.io.Serializable {
* @param gcpl_id
* IN: Identifier of group creation property list.
* @param gapl_id
- * IN: Identifier of group access property list. (No group access properties have been implemented at
- * this time; use H5P_DEFAULT.)
+ * IN: Identifier of group access property list. (No group access properties have been
+ *implemented at this time; use H5P_DEFAULT.)
*
* @return a valid group identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public static long H5Gcreate(long loc_id, String name, long lcpl_id, long gcpl_id, long gapl_id)
- throws HDF5LibraryException, NullPointerException {
+ throws HDF5LibraryException, NullPointerException
+ {
long id = _H5Gcreate2(loc_id, name, lcpl_id, gcpl_id, gapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Gcreate add {}", id);
@@ -4893,7 +5021,8 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Gcreate2(long loc_id, String name, long lcpl_id, long gcpl_id,
- long gapl_id) throws HDF5LibraryException, NullPointerException;
+ long gapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Gcreate_anon creates a new empty group in the file specified by loc_id.
@@ -4903,15 +5032,16 @@ public class H5 implements java.io.Serializable {
* @param gcpl_id
* IN: Identifier of group creation property list.
* @param gapl_id
- * IN: Identifier of group access property list. (No group access properties have been implemented at
- * this time; use H5P_DEFAULT.)
+ * IN: Identifier of group access property list. (No group access properties have been
+ * implemented at this time; use H5P_DEFAULT.)
*
* @return a valid group identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Gcreate_anon(long loc_id, long gcpl_id, long gapl_id) throws HDF5LibraryException {
+ public static long H5Gcreate_anon(long loc_id, long gcpl_id, long gapl_id) throws HDF5LibraryException
+ {
long id = _H5Gcreate_anon(loc_id, gcpl_id, gapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Gcreate_anon add {}", id);
@@ -4922,11 +5052,11 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Gcreate_anon(long loc_id, long gcpl_id, long gapl_id)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
- * H5Gget_create_plist returns an identifier for the group creation property list associated with the group
- * specified by group_id.
+ * H5Gget_create_plist returns an identifier for the group creation property list associated with the
+ * group specified by group_id.
*
* @param group_id
* IN: Identifier of the group.
@@ -4934,13 +5064,13 @@ public class H5 implements java.io.Serializable {
* @return an identifier for the group's creation property list
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Gget_create_plist(long group_id) throws HDF5LibraryException;
/**
- * H5Gget_info retrieves information about the group specified by group_id. The information is returned in the
- * group_info struct.
+ * H5Gget_info retrieves information about the group specified by group_id. The information is returned in
+ * the group_info struct.
*
* @param group_id
* IN: Identifier of the group.
@@ -4948,12 +5078,13 @@ public class H5 implements java.io.Serializable {
* @return a structure in which group information is returned
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native H5G_info_t H5Gget_info(long group_id) throws HDF5LibraryException;
/**
- * H5Gget_info_by_idx retrieves information about a group, according to the group's position within an index.
+ * H5Gget_info_by_idx retrieves information about a group, according to the group's position within an
+ * index.
*
* @param group_id
* IN: File or group identifier.
@@ -4971,16 +5102,18 @@ public class H5 implements java.io.Serializable {
* @return a structure in which group information is returned
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native H5G_info_t H5Gget_info_by_idx(long group_id, String group_name, int idx_type,
- int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native H5G_info_t H5Gget_info_by_idx(long group_id, String group_name,
+ int idx_type, int order, long n,
+ long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Gget_info_by_name retrieves information about the group group_name located in the file or group specified by
- * loc_id.
+ * H5Gget_info_by_name retrieves information about the group group_name located in the file or group
+ * specified by loc_id.
*
* @param group_id
* IN: File or group identifier.
@@ -4992,15 +5125,16 @@ public class H5 implements java.io.Serializable {
* @return a structure in which group information is returned
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native H5G_info_t H5Gget_info_by_name(long group_id, String name, long lapl_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * retrieves information of all objects under the group (name) located in the file or group specified by loc_id.
+ * retrieves information of all objects under the group (name) located in the file or group specified by
+ * loc_id.
*
* @param loc_id
* IN: File or group identifier
@@ -5016,21 +5150,25 @@ public class H5 implements java.io.Serializable {
* @return the number of items found
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
*/
- public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes,
- H5O_token_t[] tokens) throws HDF5LibraryException, NullPointerException {
+ public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames,
+ int[] objTypes, H5O_token_t[] tokens)
+ throws HDF5LibraryException, NullPointerException
+ {
if (objNames == null) {
throw new NullPointerException("H5Gget_obj_info_all(): name array is null");
}
- return H5Gget_obj_info_all(loc_id, name, objNames, objTypes, null, null, tokens, HDF5Constants.H5_INDEX_NAME);
+ return H5Gget_obj_info_all(loc_id, name, objNames, objTypes, null, null, tokens,
+ HDF5Constants.H5_INDEX_NAME);
}
/**
- * retrieves information of all objects under the group (name) located in the file or group specified by loc_id.
+ * retrieves information of all objects under the group (name) located in the file or group specified by
+ * loc_id.
*
* @param loc_id
* IN: File or group identifier
@@ -5050,17 +5188,21 @@ public class H5 implements java.io.Serializable {
* @return the number of items found
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
*/
- public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes,
- int[] ltype, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException {
+ public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames,
+ int[] objTypes, int[] ltype, H5O_token_t[] tokens,
+ int indx_type)
+ throws HDF5LibraryException, NullPointerException
+ {
return H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, null, tokens, indx_type, -1);
}
/**
- * retrieves information of all objects under the group (name) located in the file or group specified by loc_id.
+ * retrieves information of all objects under the group (name) located in the file or group specified by
+ * loc_id.
*
* @param loc_id
* IN: File or group identifier
@@ -5082,17 +5224,21 @@ public class H5 implements java.io.Serializable {
* @return the number of items found
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
*/
- public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes,
- int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException {
+ public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames,
+ int[] objTypes, int[] ltype, long[] fno,
+ H5O_token_t[] tokens, int indx_type)
+ throws HDF5LibraryException, NullPointerException
+ {
return H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens, indx_type, -1);
}
/**
- * retrieves information of all objects under the group (name) located in the file or group specified by loc_id.
+ * retrieves information of all objects under the group (name) located in the file or group specified by
+ * loc_id.
*
* @param loc_id
* IN: File or group identifier
@@ -5116,13 +5262,15 @@ public class H5 implements java.io.Serializable {
* @return the number of items found
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
*/
- public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes,
- int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type, int indx_order) throws HDF5LibraryException,
- NullPointerException {
+ public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] objNames,
+ int[] objTypes, int[] ltype, long[] fno,
+ H5O_token_t[] tokens, int indx_type, int indx_order)
+ throws HDF5LibraryException, NullPointerException
+ {
if (objNames == null) {
throw new NullPointerException("H5Gget_obj_info_full(): name array is null");
}
@@ -5152,21 +5300,22 @@ public class H5 implements java.io.Serializable {
indx_order = HDF5Constants.H5_ITER_INC;
log.trace("H5Gget_obj_info_full: objNames_len={}", objNames.length);
- int status = H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens, objNames.length, indx_type,
- indx_order);
+ int status = H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens,
+ objNames.length, indx_type, indx_order);
for (int indx = 0; indx < objNames.length; indx++)
log.trace("H5Gget_obj_info_full: objNames={}", objNames[indx]);
return status;
}
- private synchronized static native int H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes,
- int[] ltype, long[] fno, H5O_token_t[] tokens, int n, int indx_type, int indx_order) throws HDF5LibraryException,
- NullPointerException;
+ private synchronized static native int
+ H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes, int[] ltype, long[] fno,
+ H5O_token_t[] tokens, int n, int indx_type, int indx_order)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Gget_obj_info_idx report the name and type of object with index 'idx' in a Group. The 'idx' corresponds to the
- * index maintained by H5Giterate. Each link is returned, so objects with multiple links will be counted once for
- * each link.
+ * H5Gget_obj_info_idx report the name and type of object with index 'idx' in a Group. The 'idx'
+ * corresponds to the index maintained by H5Giterate. Each link is returned, so objects with multiple
+ * links will be counted once for each link.
*
* @param loc_id
* IN: file or group ID.
@@ -5182,19 +5331,21 @@ public class H5 implements java.io.Serializable {
* @return non-negative if successful, -1 if not.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
*/
- public synchronized static int H5Gget_obj_info_idx(long loc_id, String name, int idx, String[] oname, int[] type)
- throws HDF5LibraryException, NullPointerException {
+ public synchronized static int H5Gget_obj_info_idx(long loc_id, String name, int idx, String[] oname,
+ int[] type)
+ throws HDF5LibraryException, NullPointerException
+ {
String n[] = new String[1];
- n[0] = new String("");
- oname[0] = H5Lget_name_by_idx(loc_id, name, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, idx,
- HDF5Constants.H5P_DEFAULT);
- H5L_info_t info = H5Lget_info_by_idx(loc_id, name, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, idx,
- HDF5Constants.H5P_DEFAULT);
- type[0] = info.type;
+ n[0] = new String("");
+ oname[0] = H5Lget_name_by_idx(loc_id, name, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC,
+ idx, HDF5Constants.H5P_DEFAULT);
+ H5L_info_t info = H5Lget_info_by_idx(loc_id, name, HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, idx, HDF5Constants.H5P_DEFAULT);
+ type[0] = info.type;
return 0;
}
@@ -5204,8 +5355,8 @@ public class H5 implements java.io.Serializable {
* a lot of time to finish if the number of objects is more than 10,000
*/
/**
- * retrieves information of all objects (recurvisely) under the group (name) located in the file or group specified
- * by loc_id up to maximum specified by objMax.
+ * retrieves information of all objects (recurvisely) under the group (name) located in the file or group
+ * specified by loc_id up to maximum specified by objMax.
*
* @param loc_id
* IN: File or group identifier
@@ -5223,12 +5374,14 @@ public class H5 implements java.io.Serializable {
* @return the number of items found
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
*/
- public synchronized static int H5Gget_obj_info_max(long loc_id, String[] objNames, int[] objTypes, int[] lnkTypes,
- H5O_token_t[] objToken, long objMax) throws HDF5LibraryException, NullPointerException {
+ public synchronized static int H5Gget_obj_info_max(long loc_id, String[] objNames, int[] objTypes,
+ int[] lnkTypes, H5O_token_t[] objToken, long objMax)
+ throws HDF5LibraryException, NullPointerException
+ {
if (objNames == null) {
throw new NullPointerException("H5Gget_obj_info_max(): name array is null");
}
@@ -5256,12 +5409,15 @@ public class H5 implements java.io.Serializable {
return H5Gget_obj_info_max(loc_id, objNames, objTypes, lnkTypes, objToken, objMax, objNames.length);
}
- private synchronized static native int H5Gget_obj_info_max(long loc_id, String[] oname, int[] otype, int[] ltype,
- H5O_token_t[] tokens, long amax, int n) throws HDF5LibraryException, NullPointerException;
+ private synchronized static native int H5Gget_obj_info_max(long loc_id, String[] oname, int[] otype,
+ int[] ltype, H5O_token_t[] tokens, long amax,
+ int n)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Gn_members report the number of objects in a Group. The 'objects' include everything that will be visited by
- * H5Giterate. Each link is returned, so objects with multiple links will be counted once for each link.
+ * H5Gn_members report the number of objects in a Group. The 'objects' include everything that will be
+ * visited by H5Giterate. Each link is returned, so objects with multiple links will be counted once for
+ * each link.
*
* @param loc_id
* file or group ID.
@@ -5271,18 +5427,19 @@ public class H5 implements java.io.Serializable {
* @return the number of members in the group or -1 if error.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
*/
- public synchronized static long H5Gn_members(long loc_id, String name) throws HDF5LibraryException,
- NullPointerException {
+ public synchronized static long H5Gn_members(long loc_id, String name)
+ throws HDF5LibraryException, NullPointerException
+ {
long grp_id = H5Gopen(loc_id, name, HDF5Constants.H5P_DEFAULT);
- long n = -1;
+ long n = -1;
try {
H5G_info_t info = H5.H5Gget_info(grp_id);
- n = info.nlinks;
+ n = info.nlinks;
}
finally {
H5Gclose(grp_id);
@@ -5304,12 +5461,13 @@ public class H5 implements java.io.Serializable {
* @return a valid group identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static long H5Gopen(long loc_id, String name, long gapl_id) throws HDF5LibraryException,
- NullPointerException {
+ public static long H5Gopen(long loc_id, String name, long gapl_id)
+ throws HDF5LibraryException, NullPointerException
+ {
long id = _H5Gopen2(loc_id, name, gapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Gopen add {}", id);
@@ -5320,7 +5478,7 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Gopen2(long loc_id, String name, long gapl_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Gflush causes all buffers associated with a group to be immediately flushed to disk without
@@ -5330,7 +5488,7 @@ public class H5 implements java.io.Serializable {
* IN: Identifier of the group to be flushed.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Gflush(long group_id) throws HDF5LibraryException;
@@ -5344,7 +5502,7 @@ public class H5 implements java.io.Serializable {
* IN: Identifier of the group to be refreshed.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Grefresh(long group_id) throws HDF5LibraryException;
@@ -5387,7 +5545,7 @@ public class H5 implements java.io.Serializable {
* @return the file ID.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Iget_file_id(long obj_id) throws HDF5LibraryException;
@@ -5405,11 +5563,11 @@ public class H5 implements java.io.Serializable {
* @return the length of the name retrieved.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
@Deprecated
public synchronized static native long H5Iget_name_long(long obj_id, String[] name, long size)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Iget_name retrieves the name of an object specified by the identifier, obj_id.
*
@@ -5419,10 +5577,9 @@ public class H5 implements java.io.Serializable {
* @return String for Attribute name.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native String H5Iget_name(long obj_id)
- throws HDF5LibraryException;
+ public synchronized static native String H5Iget_name(long obj_id) throws HDF5LibraryException;
/**
* H5Iget_ref obtains the number of references outstanding specified by the identifier, obj_id.
@@ -5433,13 +5590,14 @@ public class H5 implements java.io.Serializable {
* @return the reference count.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Iget_ref(long obj_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Iget_ref(long obj_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Idec_ref decrements the reference count specified by the identifier, obj_id.
- * If the reference count for an ID reaches zero, the object will be closed.
+ * If the reference count for an ID reaches zero, the object will be closed.
*
* @param obj_id
* IN: Identifier of the object.
@@ -5447,9 +5605,10 @@ public class H5 implements java.io.Serializable {
* @return the reference count.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Idec_ref(long obj_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Idec_ref(long obj_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Iinc_ref increments the reference count specified by the identifier, obj_id.
@@ -5460,9 +5619,10 @@ public class H5 implements java.io.Serializable {
* @return the reference count.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Iinc_ref(long obj_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Iinc_ref(long obj_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Iget_type retrieves the type of the object identified by obj_id.
@@ -5473,13 +5633,13 @@ public class H5 implements java.io.Serializable {
* @return the object type if successful; otherwise H5I_BADID.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Iget_type(long obj_id) throws HDF5LibraryException;
/**
- * H5Iget_type_ref retrieves the reference count on an ID type. The reference count is used by the library to
- * indicate when an ID type can be destroyed.
+ * H5Iget_type_ref retrieves the reference count on an ID type. The reference count is used by the library
+ * to indicate when an ID type can be destroyed.
*
* @param type_id
* IN: The identifier of the type whose reference count is to be retrieved
@@ -5487,13 +5647,13 @@ public class H5 implements java.io.Serializable {
* @return The current reference count on success, negative on failure.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Iget_type_ref(long type_id) throws HDF5LibraryException;
/**
- * H5Idec_type_ref decrements the reference count on an identifier type. The reference count is used by the
- * library to indicate when an identifier type can be destroyed. If the reference count reaches zero,
+ * H5Idec_type_ref decrements the reference count on an identifier type. The reference count is used by
+ * the library to indicate when an identifier type can be destroyed. If the reference count reaches zero,
* this function will destroy it.
*
* @param type_id
@@ -5502,13 +5662,13 @@ public class H5 implements java.io.Serializable {
* @return The current reference count on success, negative on failure.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Idec_type_ref(long type_id) throws HDF5LibraryException;
/**
- * H5Iinc_type_ref increments the reference count on an ID type. The reference count is used by the library
- * to indicate when an ID type can be destroyed.
+ * H5Iinc_type_ref increments the reference count on an ID type. The reference count is used by the
+ * library to indicate when an ID type can be destroyed.
*
* @param type_id
* IN: The identifier of the type whose reference count is to be incremented
@@ -5516,7 +5676,7 @@ public class H5 implements java.io.Serializable {
* @return The current reference count on success, negative on failure.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Iinc_type_ref(long type_id) throws HDF5LibraryException;
@@ -5529,7 +5689,7 @@ public class H5 implements java.io.Serializable {
* @return Number of identifiers of the specified identifier type
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Inmembers(long type_id) throws HDF5LibraryException;
@@ -5542,7 +5702,7 @@ public class H5 implements java.io.Serializable {
* @return a boolean, true if the specified identifier id is valid
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native boolean H5Iis_valid(long obj_id) throws HDF5LibraryException;
@@ -5555,11 +5715,10 @@ public class H5 implements java.io.Serializable {
* @return a boolean, true if the specified identifier type exists
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native boolean H5Itype_exists(int type_id) throws HDF5LibraryException;
-
/**
* H5Iclear_type deletes all identifiers of the type identified by the argument type.
*
@@ -5569,9 +5728,10 @@ public class H5 implements java.io.Serializable {
* IN: Whether or not to force deletion of all identifiers
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Iclear_type(int type_id, boolean force) throws HDF5LibraryException;
+ public synchronized static native void H5Iclear_type(int type_id, boolean force)
+ throws HDF5LibraryException;
/**
* H5Idestroy_type deletes an entire identifier type. All identifiers of this type are destroyed
@@ -5581,7 +5741,7 @@ public class H5 implements java.io.Serializable {
* IN: Identifier of identifier type which is to be destroyed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Idestroy_type(int type_id) throws HDF5LibraryException;
@@ -5604,7 +5764,6 @@ public class H5 implements java.io.Serializable {
// typedef herr_t (*H5I_iterate_func_t)(hid_t id, void *udata);
// herr_t H5Iiterate(H5I_type_t type, H5I_iterate_func_t op, void *op_data);
-
// //////////////////////////////////////////////////////////////////
// H5L: Link Interface Functions //
// //////////////////////////////////////////////////////////////////
@@ -5626,16 +5785,17 @@ public class H5 implements java.io.Serializable {
* IN: Link access property list identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native void H5Lcopy(long src_loc, String src_name, long dst_loc, String dst_name,
- long lcpl_id, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Lcopy(long src_loc, String src_name, long dst_loc,
+ String dst_name, long lcpl_id, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Lcreate_external creates a new soft link to an external object, which is an object in a different HDF5 file
- * from the location of the link.
+ * H5Lcreate_external creates a new soft link to an external object, which is an object in a different
+ * HDF5 file from the location of the link.
*
* @param file_name
* IN: Name of the target file containing the target object.
@@ -5651,12 +5811,14 @@ public class H5 implements java.io.Serializable {
* IN: Link access property list identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native void H5Lcreate_external(String file_name, String obj_name, long link_loc_id,
- String link_name, long lcpl_id, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Lcreate_external(String file_name, String obj_name,
+ long link_loc_id, String link_name,
+ long lcpl_id, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Lcreate_hard creates a new hard link to a pre-existing object in an HDF5 file.
@@ -5675,12 +5837,13 @@ public class H5 implements java.io.Serializable {
* IN: Link access property list identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - cur_name or dst_name is null.
+ * cur_name or dst_name is null.
**/
- public synchronized static native void H5Lcreate_hard(long cur_loc, String cur_name, long dst_loc, String dst_name,
- long lcpl_id, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Lcreate_hard(long cur_loc, String cur_name, long dst_loc,
+ String dst_name, long lcpl_id, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Lcreate_soft creates a new soft link to an object in an HDF5 file.
@@ -5697,12 +5860,13 @@ public class H5 implements java.io.Serializable {
* IN: Link access property list identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - link_name is null.
+ * link_name is null.
**/
- public synchronized static native void H5Lcreate_soft(String link_target, long link_loc_id, String link_name,
- long lcpl_id, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Lcreate_soft(String link_target, long link_loc_id,
+ String link_name, long lcpl_id, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Ldelete removes the link specified from a group.
@@ -5715,15 +5879,16 @@ public class H5 implements java.io.Serializable {
* IN: Link access property list identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native void H5Ldelete(long loc_id, String name, long lapl_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Ldelete_by_idx removes the nth link in a group according to the specified order and in the specified index.
+ * H5Ldelete_by_idx removes the nth link in a group according to the specified order and in the specified
+ * index.
*
* @param loc_id
* IN: File or group identifier specifying location of subject group
@@ -5739,12 +5904,13 @@ public class H5 implements java.io.Serializable {
* IN: Link access property list identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - group_name is null.
+ * group_name is null.
**/
- public synchronized static native void H5Ldelete_by_idx(long loc_id, String group_name, int idx_type, int order,
- long n, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Ldelete_by_idx(long loc_id, String group_name, int idx_type,
+ int order, long n, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Lexists checks if a link with a particular name exists in a group.
@@ -5759,12 +5925,12 @@ public class H5 implements java.io.Serializable {
* @return a boolean, true if the name exists, otherwise false.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native boolean H5Lexists(long loc_id, String name, long lapl_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Lget_info returns information about the specified link.
@@ -5779,16 +5945,16 @@ public class H5 implements java.io.Serializable {
* @return a buffer(H5L_info_t) for the link information.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native H5L_info_t H5Lget_info(long loc_id, String name, long lapl_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Lget_info_by_idx opens a named datatype at the location specified by loc_id and return an identifier for the
- * datatype.
+ * H5Lget_info_by_idx opens a named datatype at the location specified by loc_id and return an identifier
+ * for the datatype.
*
* @param loc_id
* IN: File or group identifier specifying location of subject group
@@ -5806,16 +5972,18 @@ public class H5 implements java.io.Serializable {
* @return a buffer(H5L_info_t) for the link information.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - group_name is null.
+ * group_name is null.
**/
- public synchronized static native H5L_info_t H5Lget_info_by_idx(long loc_id, String group_name, int idx_type,
- int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native H5L_info_t H5Lget_info_by_idx(long loc_id, String group_name,
+ int idx_type, int order, long n,
+ long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Lget_name_by_idx retrieves name of the nth link in a group, according to the order within a specified field or
- * index.
+ * H5Lget_name_by_idx retrieves name of the nth link in a group, according to the order within a specified
+ * field or index.
*
* @param loc_id
* IN: File or group identifier specifying location of subject group
@@ -5833,12 +6001,13 @@ public class H5 implements java.io.Serializable {
* @return a String for the link name.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - group_name is null.
+ * group_name is null.
**/
public synchronized static native String H5Lget_name_by_idx(long loc_id, String group_name, int idx_type,
- int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ int order, long n, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Lget_value returns the link value of a symbolic link. Note that this function is a combination
@@ -5856,12 +6025,13 @@ public class H5 implements java.io.Serializable {
* @return the link type
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native int H5Lget_value(long loc_id, String name, String[] link_value, long lapl_id)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Lget_value(long loc_id, String name, String[] link_value,
+ long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Lget_value_by_idx retrieves value of the nth link in a group, according to the order within an index.
@@ -5886,12 +6056,14 @@ public class H5 implements java.io.Serializable {
* @return the link type
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - group_name is null.
+ * group_name is null.
**/
- public synchronized static native int H5Lget_value_by_idx(long loc_id, String group_name, int idx_type, int order,
- long n, String[] link_value, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Lget_value_by_idx(long loc_id, String group_name, int idx_type,
+ int order, long n, String[] link_value,
+ long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Literate iterates through links in a group.
@@ -5909,14 +6081,15 @@ public class H5 implements java.io.Serializable {
* @param op_data
* IN: User-defined pointer to data required by the application for its processing of the link
*
- * @return returns the return value of the first operator that returns a positive value, or zero if all members were
- * processed with no operator returning non-zero.
+ * @return returns the return value of the first operator that returns a positive value, or zero if all
+ * members were processed with no operator returning non-zero.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Literate(long grp_id, int idx_type, int order, long idx, H5L_iterate_t op,
- H5L_iterate_opdata_t op_data) throws HDF5LibraryException;
+ public synchronized static native int H5Literate(long grp_id, int idx_type, int order, long idx,
+ H5L_iterate_t op, H5L_iterate_opdata_t op_data)
+ throws HDF5LibraryException;
/**
* H5Literate_by_name iterates through links in a group.
@@ -5938,17 +6111,18 @@ public class H5 implements java.io.Serializable {
* @param lapl_id
* IN: Link access property list identifier
*
- * @return returns the return value of the first operator that returns a positive value, or zero if all members were
- * processed with no operator returning non-zero.
+ * @return returns the return value of the first operator that returns a positive value, or zero if all
+ * members were processed with no operator returning non-zero.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - group_name is null.
+ * group_name is null.
**/
- public synchronized static native int H5Literate_by_name(long grp_id, String group_name, int idx_type, int order,
- long idx, H5L_iterate_t op, H5L_iterate_opdata_t op_data, long lapl_id) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Literate_by_name(long grp_id, String group_name, int idx_type,
+ int order, long idx, H5L_iterate_t op,
+ H5L_iterate_opdata_t op_data, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Lmove renames a link within an HDF5 file.
@@ -5967,12 +6141,13 @@ public class H5 implements java.io.Serializable {
* IN: Link access property list identifier to be associated with the new link.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native void H5Lmove(long src_loc, String src_name, long dst_loc, String dst_name,
- long lcpl_id, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Lmove(long src_loc, String src_name, long dst_loc,
+ String dst_name, long lcpl_id, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Lvisit recursively visits all links starting from a specified group.
@@ -5988,14 +6163,14 @@ public class H5 implements java.io.Serializable {
* @param op_data
* IN: User-defined pointer to data required by the application for its processing of the link
*
- * @return returns the return value of the first operator that returns a positive value, or zero if all members were
- * processed with no operator returning non-zero.
+ * @return returns the return value of the first operator that returns a positive value, or zero if all
+ * members were processed with no operator returning non-zero.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Lvisit(long grp_id, int idx_type, int order, H5L_iterate_t op,
- H5L_iterate_opdata_t op_data) throws HDF5LibraryException;
+ H5L_iterate_opdata_t op_data) throws HDF5LibraryException;
/**
* H5Lvisit_by_name recursively visits all links starting from a specified group.
@@ -6015,17 +6190,18 @@ public class H5 implements java.io.Serializable {
* @param lapl_id
* IN: link access property
*
- * @return returns the return value of the first operator that returns a positive value, or zero if all members were
- * processed with no operator returning non-zero.
+ * @return returns the return value of the first operator that returns a positive value, or zero if all
+ * members were processed with no operator returning non-zero.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - group_name is null.
+ * group_name is null.
**/
- public synchronized static native int H5Lvisit_by_name(long loc_id, String group_name, int idx_type, int order,
- H5L_iterate_t op, H5L_iterate_opdata_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException;
-
+ public synchronized static native int H5Lvisit_by_name(long loc_id, String group_name, int idx_type,
+ int order, H5L_iterate_t op,
+ H5L_iterate_opdata_t op_data, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Lis_registered tests whether a user-defined link class is currently registered,
@@ -6035,21 +6211,23 @@ public class H5 implements java.io.Serializable {
* IN: User-defined link class identifier
*
* @return Returns a positive value if the link class has been registered and zero if it is unregistered.
- * Otherwise returns a negative value; this may mean that the identifier is not a valid user-defined class identifier.
+ * Otherwise returns a negative value; this may mean that the identifier is not a valid
+ * user-defined class identifier.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Lis_registered(int link_cls_id) throws HDF5LibraryException;
/**
- * H5Lunregister unregisters a class of user-defined links, preventing them from being traversed, queried, moved, etc.
+ * H5Lunregister unregisters a class of user-defined links, preventing them from being traversed, queried,
+ * moved, etc.
*
* @param link_cls_id
* IN: User-defined link class identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Lunregister(int link_cls_id) throws HDF5LibraryException;
@@ -6093,9 +6271,10 @@ public class H5 implements java.io.Serializable {
* @return non-negative on success
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static int H5Oclose(long object_id) throws HDF5LibraryException {
+ public static int H5Oclose(long object_id) throws HDF5LibraryException
+ {
if (object_id < 0)
return 0; // throw new HDF5LibraryException("Negative ID");;
@@ -6108,8 +6287,8 @@ public class H5 implements java.io.Serializable {
private synchronized static native int _H5Oclose(long object_id) throws HDF5LibraryException;
/**
- * H5Ocopy copies the group, dataset or named datatype specified from the file or group specified by source location
- * to the destination location.
+ * H5Ocopy copies the group, dataset or named datatype specified from the file or group specified by
+ * source location to the destination location.
*
* @param src_loc_id
* IN: Object identifier indicating the location of the source object to be copied
@@ -6125,12 +6304,13 @@ public class H5 implements java.io.Serializable {
* IN: Link creation property list for the new hard link
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native void H5Ocopy(long src_loc_id, String src_name, long dst_loc_id, String dst_name,
- long ocpypl_id, long lcpl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Ocopy(long src_loc_id, String src_name, long dst_loc_id,
+ String dst_name, long ocpypl_id, long lcpl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Oget_comment retrieves the comment for the specified object.
@@ -6141,9 +6321,10 @@ public class H5 implements java.io.Serializable {
* @return the comment
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native String H5Oget_comment(long obj_id) throws HDF5LibraryException, IllegalArgumentException;
+ public synchronized static native String H5Oget_comment(long obj_id)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
* H5Oset_comment sets the comment for the specified object.
@@ -6154,12 +6335,13 @@ public class H5 implements java.io.Serializable {
* IN: The new comment.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
* @deprecated As of HDF5 1.8 in favor of object attributes.
**/
@Deprecated
- public synchronized static native void H5Oset_comment(long obj_id, String comment) throws HDF5LibraryException;
+ public synchronized static native void H5Oset_comment(long obj_id, String comment)
+ throws HDF5LibraryException;
/**
* H5Oget_comment_by_name retrieves the comment for an object.
@@ -6174,12 +6356,12 @@ public class H5 implements java.io.Serializable {
* @return the comment
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native String H5Oget_comment_by_name(long loc_id, String name, long lapl_id)
- throws HDF5LibraryException, IllegalArgumentException, NullPointerException;
+ throws HDF5LibraryException, IllegalArgumentException, NullPointerException;
/**
* H5Oset_comment_by_name sets the comment for the specified object.
@@ -6194,15 +6376,16 @@ public class H5 implements java.io.Serializable {
* IN: Link access property list identifier.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
*
* @deprecated As of HDF5 1.8 in favor of object attributes.
**/
@Deprecated
- public synchronized static native void H5Oset_comment_by_name(long loc_id, String name, String comment, long lapl_id)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Oset_comment_by_name(long loc_id, String name, String comment,
+ long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Oget_info retrieves the metadata for an object specified by an identifier.
@@ -6213,12 +6396,12 @@ public class H5 implements java.io.Serializable {
* @return object information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static H5O_info_t H5Oget_info(long loc_id) throws HDF5LibraryException,
- NullPointerException {
+ public static H5O_info_t H5Oget_info(long loc_id) throws HDF5LibraryException, NullPointerException
+ {
return H5Oget_info(loc_id, HDF5Constants.H5O_INFO_ALL);
}
@@ -6233,38 +6416,41 @@ public class H5 implements java.io.Serializable {
* @return object information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native H5O_info_t H5Oget_info(long loc_id, int fields) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native H5O_info_t H5Oget_info(long loc_id, int fields)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name.
+ * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and
+ * relative name.
*
* @param loc_id
* IN: File or group identifier specifying location of group in which object is located
* @param name
* IN: Relative name of group
* @param lapl_id
- * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as
- * H5P_DEFAULT.)
+ * IN: Access property list identifier for the link pointing to the object (Not currently used;
+ * pass as H5P_DEFAULT.)
*
* @return object information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public static H5O_info_t H5Oget_info_by_name(long loc_id, String name, long lapl_id)
- throws HDF5LibraryException, NullPointerException {
+ throws HDF5LibraryException, NullPointerException
+ {
return H5Oget_info_by_name(loc_id, name, HDF5Constants.H5O_INFO_ALL, lapl_id);
}
/**
- * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name.
+ * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and
+ * relative name.
*
* @param loc_id
* IN: File or group identifier specifying location of group in which object is located
@@ -6273,18 +6459,19 @@ public class H5 implements java.io.Serializable {
* @param fields
* IN: Object fields to select
* @param lapl_id
- * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as
- * H5P_DEFAULT.)
+ * IN: Access property list identifier for the link pointing to the object (Not currently used;
+ * pass as H5P_DEFAULT.)
*
* @return object information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native H5O_info_t H5Oget_info_by_name(long loc_id, String name, int fields, long lapl_id)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native H5O_info_t H5Oget_info_by_name(long loc_id, String name, int fields,
+ long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Oget_info_by_idx retrieves the metadata for an object, identifying the object by an index position.
@@ -6300,19 +6487,22 @@ public class H5 implements java.io.Serializable {
* @param n
* IN: Object to open
* @param lapl_id
- * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as
- * H5P_DEFAULT.)
+ * IN: Access property list identifier for the link pointing to the object (Not currently used;
+ * pass as H5P_DEFAULT.)
*
* @return object information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static H5O_info_t H5Oget_info_by_idx(long loc_id, String group_name, int idx_type,
- int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException {
- return H5Oget_info_by_idx(loc_id, group_name, idx_type, order, n, HDF5Constants.H5O_INFO_ALL, lapl_id);
+ public static H5O_info_t H5Oget_info_by_idx(long loc_id, String group_name, int idx_type, int order,
+ long n, long lapl_id)
+ throws HDF5LibraryException, NullPointerException
+ {
+ return H5Oget_info_by_idx(loc_id, group_name, idx_type, order, n, HDF5Constants.H5O_INFO_ALL,
+ lapl_id);
}
/**
@@ -6331,22 +6521,25 @@ public class H5 implements java.io.Serializable {
* @param fields
* IN: Object fields to select
* @param lapl_id
- * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as
- * H5P_DEFAULT.)
+ * IN: Access property list identifier for the link pointing to the object (Not currently used;
+ * pass as H5P_DEFAULT.)
*
* @return object information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native H5O_info_t H5Oget_info_by_idx(long loc_id, String group_name, int idx_type,
- int order, long n, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native H5O_info_t H5Oget_info_by_idx(long loc_id, String group_name,
+ int idx_type, int order, long n,
+ int fields, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Oget_native_info retrieves the native HDF5-specific metadata for an HDF5 object specified by an identifier.
- * Native HDF5-specific metadata includes things like object header information and object storage layout information.
+ * H5Oget_native_info retrieves the native HDF5-specific metadata for an HDF5 object specified by an
+ * identifier. Native HDF5-specific metadata includes things like object header information and object
+ * storage layout information.
*
* @param loc_id
* IN: Identifier for target object
@@ -6354,18 +6547,20 @@ public class H5 implements java.io.Serializable {
* @return object information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static H5O_native_info_t H5Oget_native_info(long loc_id) throws HDF5LibraryException,
- NullPointerException {
+ public static H5O_native_info_t H5Oget_native_info(long loc_id)
+ throws HDF5LibraryException, NullPointerException
+ {
return H5Oget_native_info(loc_id, HDF5Constants.H5O_NATIVE_INFO_ALL);
}
/**
- * H5Oget_native_info retrieves the native HDF5-specific metadata for an HDF5 object specified by an identifier.
- * Native HDF5-specific metadata includes things like object header information and object storage layout information.
+ * H5Oget_native_info retrieves the native HDF5-specific metadata for an HDF5 object specified by an
+ * identifier. Native HDF5-specific metadata includes things like object header information and object
+ * storage layout information.
*
* @param loc_id
* IN: Identifier for target object
@@ -6375,42 +6570,43 @@ public class H5 implements java.io.Serializable {
* @return object information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native H5O_native_info_t H5Oget_native_info(long loc_id, int fields) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native H5O_native_info_t H5Oget_native_info(long loc_id, int fields)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Oget_native_info_by_name retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object
- * by location and relative name. Native HDF5-specific metadata includes things like object header information and
- * object storage layout information.
+ * H5Oget_native_info_by_name retrieves the native HDF5-specific metadata for an HDF5 object, identifying
+ * the object by location and relative name. Native HDF5-specific metadata includes things like object
+ * header information and object storage layout information.
*
* @param loc_id
* IN: File or group identifier specifying location of group in which object is located
* @param name
* IN: Relative name of group
* @param lapl_id
- * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as
- * H5P_DEFAULT.)
+ * IN: Access property list identifier for the link pointing to the object (Not currently used;
+ * pass as H5P_DEFAULT.)
*
* @return object information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public static H5O_native_info_t H5Oget_native_info_by_name(long loc_id, String name, long lapl_id)
- throws HDF5LibraryException, NullPointerException {
+ throws HDF5LibraryException, NullPointerException
+ {
return H5Oget_native_info_by_name(loc_id, name, HDF5Constants.H5O_NATIVE_INFO_ALL, lapl_id);
}
/**
- * H5Oget_native_info_by_name retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object
- * by location and relative name. Native HDF5-specific metadata includes things like object header information and
- * object storage layout information.
+ * H5Oget_native_info_by_name retrieves the native HDF5-specific metadata for an HDF5 object, identifying
+ * the object by location and relative name. Native HDF5-specific metadata includes things like object
+ * header information and object storage layout information.
*
* @param loc_id
* IN: File or group identifier specifying location of group in which object is located
@@ -6419,23 +6615,24 @@ public class H5 implements java.io.Serializable {
* @param fields
* IN: Object fields to select
* @param lapl_id
- * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as
- * H5P_DEFAULT.)
+ * IN: Access property list identifier for the link pointing to the object (Not currently used;
+ * pass as H5P_DEFAULT.)
*
* @return object information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native H5O_native_info_t H5Oget_native_info_by_name(long loc_id, String name, int fields, long lapl_id)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native H5O_native_info_t H5Oget_native_info_by_name(long loc_id, String name,
+ int fields, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Oget_native_info_by_idx retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object
- * by an index position. Native HDF5-specific metadata includes things like object header information and
- * object storage layout information.
+ * H5Oget_native_info_by_idx retrieves the native HDF5-specific metadata for an HDF5 object, identifying
+ * the object by an index position. Native HDF5-specific metadata includes things like object header
+ * information and object storage layout information.
*
* @param loc_id
* IN: File or group identifier
@@ -6448,25 +6645,28 @@ public class H5 implements java.io.Serializable {
* @param n
* IN: Object to open
* @param lapl_id
- * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as
- * H5P_DEFAULT.)
+ * IN: Access property list identifier for the link pointing to the object (Not currently used;
+ * pass as H5P_DEFAULT.)
*
* @return object information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public static H5O_native_info_t H5Oget_native_info_by_idx(long loc_id, String group_name, int idx_type,
- int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException {
- return H5Oget_native_info_by_idx(loc_id, group_name, idx_type, order, n, HDF5Constants.H5O_NATIVE_INFO_ALL, lapl_id);
+ int order, long n, long lapl_id)
+ throws HDF5LibraryException, NullPointerException
+ {
+ return H5Oget_native_info_by_idx(loc_id, group_name, idx_type, order, n,
+ HDF5Constants.H5O_NATIVE_INFO_ALL, lapl_id);
}
/**
- * H5Oget_native_info_by_idx retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object
- * by an index position. Native HDF5-specific metadata includes things like object header information and
- * object storage layout information.
+ * H5Oget_native_info_by_idx retrieves the native HDF5-specific metadata for an HDF5 object, identifying
+ * the object by an index position. Native HDF5-specific metadata includes things like object header
+ * information and object storage layout information.
*
* @param loc_id
* IN: File or group identifier
@@ -6481,18 +6681,19 @@ public class H5 implements java.io.Serializable {
* @param fields
* IN: Object fields to select
* @param lapl_id
- * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as
- * H5P_DEFAULT.)
+ * IN: Access property list identifier for the link pointing to the object (Not currently used;
+ * pass as H5P_DEFAULT.)
*
* @return object information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native H5O_native_info_t H5Oget_native_info_by_idx(long loc_id, String group_name, int idx_type,
- int order, long n, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native H5O_native_info_t H5Oget_native_info_by_idx(
+ long loc_id, String group_name, int idx_type, int order, long n, int fields, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Olink creates a new hard link to an object in an HDF5 file.
@@ -6509,12 +6710,13 @@ public class H5 implements java.io.Serializable {
* IN: Access property list identifier.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native void H5Olink(long obj_id, long new_loc_id, String new_name, long lcpl_id,
- long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Olink(long obj_id, long new_loc_id, String new_name,
+ long lcpl_id, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Oopen opens a group, dataset, or named datatype specified by a location and a path name.
@@ -6529,11 +6731,13 @@ public class H5 implements java.io.Serializable {
* @return an object identifier for the opened object
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static long H5Oopen(long loc_id, String name, long lapl_id) throws HDF5LibraryException, NullPointerException {
+ public static long H5Oopen(long loc_id, String name, long lapl_id)
+ throws HDF5LibraryException, NullPointerException
+ {
long id = _H5Oopen(loc_id, name, lapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Oopen add {}", id);
@@ -6544,7 +6748,7 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Oopen(long loc_id, String name, long lapl_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Ovisit recursively visits all objects accessible from a specified object.
@@ -6558,18 +6762,20 @@ public class H5 implements java.io.Serializable {
* @param op
* IN: Callback function passing data regarding the object to the calling application
* @param op_data
- * IN: User-defined pointer to data required by the application for its processing of the object
+ * IN: User-defined pointer to data required by the application for its processing of the
+ * object
*
- * @return returns the return value of the first operator that returns a positive value, or zero if all members were
- * processed with no operator returning non-zero.
+ * @return returns the return value of the first operator that returns a positive value, or zero if all
+ * members were processed with no operator returning non-zero.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_t op, H5O_iterate_opdata_t op_data)
- throws HDF5LibraryException, NullPointerException {
+ public static int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_t op,
+ H5O_iterate_opdata_t op_data) throws HDF5LibraryException, NullPointerException
+ {
return H5Ovisit(obj_id, idx_type, order, op, op_data, HDF5Constants.H5O_INFO_ALL);
}
@@ -6585,20 +6791,22 @@ public class H5 implements java.io.Serializable {
* @param op
* IN: Callback function passing data regarding the object to the calling application
* @param op_data
- * IN: User-defined pointer to data required by the application for its processing of the object
+ * IN: User-defined pointer to data required by the application for its processing of the
+ * object
* @param fields
* IN: Object fields to select
*
- * @return returns the return value of the first operator that returns a positive value, or zero if all members were
- * processed with no operator returning non-zero.
+ * @return returns the return value of the first operator that returns a positive value, or zero if all
+ * members were processed with no operator returning non-zero.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_t op,
- H5O_iterate_opdata_t op_data, int fields) throws HDF5LibraryException, NullPointerException;
+ H5O_iterate_opdata_t op_data, int fields)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Ovisit_by_name recursively visits all objects starting from a specified object.
@@ -6614,21 +6822,25 @@ public class H5 implements java.io.Serializable {
* @param op
* IN: Callback function passing data regarding the object to the calling application
* @param op_data
- * IN: User-defined pointer to data required by the application for its processing of the object
+ * IN: User-defined pointer to data required by the application for its processing of the
+ * object
* @param lapl_id
* IN: Link access property list identifier
*
- * @return returns the return value of the first operator that returns a positive value, or zero if all members were
- * processed with no operator returning non-zero.
+ * @return returns the return value of the first operator that returns a positive value, or zero if all
+ * members were processed with no operator returning non-zero.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public static int H5Ovisit_by_name(long loc_id, String obj_name, int idx_type, int order,
- H5O_iterate_t op, H5O_iterate_opdata_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException {
- return H5Ovisit_by_name(loc_id, obj_name, idx_type, order, op, op_data, HDF5Constants.H5O_INFO_ALL, lapl_id);
+ H5O_iterate_t op, H5O_iterate_opdata_t op_data, long lapl_id)
+ throws HDF5LibraryException, NullPointerException
+ {
+ return H5Ovisit_by_name(loc_id, obj_name, idx_type, order, op, op_data, HDF5Constants.H5O_INFO_ALL,
+ lapl_id);
}
/**
@@ -6645,23 +6857,25 @@ public class H5 implements java.io.Serializable {
* @param op
* IN: Callback function passing data regarding the object to the calling application
* @param op_data
- * IN: User-defined pointer to data required by the application for its processing of the object
+ * IN: User-defined pointer to data required by the application for its processing of the
+ * object
* @param fields
* IN: Object fields to select
* @param lapl_id
* IN: Link access property list identifier
*
- * @return returns the return value of the first operator that returns a positive value, or zero if all members were
- * processed with no operator returning non-zero.
+ * @return returns the return value of the first operator that returns a positive value, or zero if all
+ * members were processed with no operator returning non-zero.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native int H5Ovisit_by_name(long loc_id, String obj_name, int idx_type, int order,
- H5O_iterate_t op, H5O_iterate_opdata_t op_data, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException;
-
+ public synchronized static native int
+ H5Ovisit_by_name(long loc_id, String obj_name, int idx_type, int order, H5O_iterate_t op,
+ H5O_iterate_opdata_t op_data, int fields, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Oexists_by_name is used by an application to check that an existing link resolves to an object.
@@ -6677,41 +6891,50 @@ public class H5 implements java.io.Serializable {
* @return Returns TRUE or FALSE if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public synchronized static native boolean H5Oexists_by_name(long loc_id, String obj_name, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native boolean H5Oexists_by_name(long loc_id, String obj_name, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Odecr_refcount decrements the hard link reference count for an object.
*
- * @param object_id IN: Object identifier
+ * @param object_id
+ * IN: Object identifier
*
- * @exception HDF5LibraryException - Error from the HDF-5 Library.
+ * @exception HDF5LibraryException
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Odecr_refcount(long object_id) throws HDF5LibraryException;
/**
* H5Oincr_refcount increments the hard link reference count for an object.
*
- * @param object_id IN: Object identifier
+ * @param object_id
+ * IN: Object identifier
*
- * @exception HDF5LibraryException - Error from the HDF-5 Library.
+ * @exception HDF5LibraryException
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Oincr_refcount(long object_id) throws HDF5LibraryException;
+ public synchronized static native void H5Oincr_refcount(long object_id) throws HDF5LibraryException;
/**
* H5Oopen_by_token opens a group, dataset, or named datatype using its object token within an HDF5 file.
*
- * @param loc_id IN: File or group identifier
- * @param token IN: Object's token in the file
+ * @param loc_id
+ * IN: File or group identifier
+ * @param token
+ * IN: Object's token in the file
*
* @return an object identifier for the opened object
*
- * @exception HDF5LibraryException - Error from the HDF-5 Library.
+ * @exception HDF5LibraryException
+ * Error from the HDF-5 Library.
**/
- public static long H5Oopen_by_token(long loc_id, H5O_token_t token) throws HDF5LibraryException {
+ public static long H5Oopen_by_token(long loc_id, H5O_token_t token) throws HDF5LibraryException
+ {
long id = _H5Oopen_by_token(loc_id, token);
if (id > 0) {
@@ -6724,25 +6947,34 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Oopen_by_token(long loc_id, H5O_token_t token)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Oopen_by_idx opens the nth object in the group specified.
*
- * @param loc_id IN: File or group identifier
- * @param group_name IN: Name of group, relative to loc_id, in which object is located
- * @param idx_type IN: Type of index by which objects are ordered
- * @param order IN: Order of iteration within index
- * @param n IN: Object to open
- * @param lapl_id IN: Access property list identifier for the link pointing to the object
+ * @param loc_id
+ * IN: File or group identifier
+ * @param group_name
+ * IN: Name of group, relative to loc_id, in which object is located
+ * @param idx_type
+ * IN: Type of index by which objects are ordered
+ * @param order
+ * IN: Order of iteration within index
+ * @param n
+ * IN: Object to open
+ * @param lapl_id
+ * IN: Access property list identifier for the link pointing to the object
*
* @return an object identifier for the opened object
*
- * @exception HDF5LibraryException - Error from the HDF-5 Library.
- * @exception NullPointerException - group_name is null.
+ * @exception HDF5LibraryException
+ * Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * group_name is null.
**/
- public static long H5Oopen_by_idx(long loc_id, String group_name,
- int idx_type, int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException {
+ public static long H5Oopen_by_idx(long loc_id, String group_name, int idx_type, int order, long n,
+ long lapl_id) throws HDF5LibraryException, NullPointerException
+ {
long id = _H5Oopen_by_idx(loc_id, group_name, idx_type, order, n, lapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Oopen_by_idx add {}", id);
@@ -6752,51 +6984,54 @@ public class H5 implements java.io.Serializable {
return id;
}
- private synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name,
- int idx_type, int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException;
+ private synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name, int idx_type,
+ int order, long n, long lapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Oflush causes all buffers associated with an object to be immediately flushed to disk without removing
- * the data from the cache. object_id can be any named object associated with an HDF5 file including a
- * dataset, a group, or a committed datatype.
+ * H5Oflush causes all buffers associated with an object to be immediately flushed to disk without
+ * removing the data from the cache. object_id can be any named object associated with an HDF5 file
+ * ncluding a dataset, a group, or a committed datatype.
*
* @param object_id
* IN: Identifier of the object to be flushed.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Oflush(long object_id) throws HDF5LibraryException;
/**
* H5Orefresh causes all buffers associated with an object to be cleared and immediately re-loaded with
* updated contents from disk. This function essentially closes the object, evicts all metadata associated
- * with it from the cache, and then re-opens the object. The reopened object is automatically re-registered
- * with the same ID. object_id can be any named object associated with an HDF5 file including a
- * dataset, a group, or a committed datatype.
+ * with it from the cache, and then re-opens the object. The reopened object is automatically
+ * re-registered with the same ID. object_id can be any named object associated with an HDF5 file
+ * including a dataset, a group, or a committed datatype.
*
* @param object_id
* IN: Identifier of the object to be refreshed.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Orefresh(long object_id) throws HDF5LibraryException;
/**
- * H5Odisable_mdc_flushes corks an object, keeping dirty entries associated with the object in the metadata cache.
+ * H5Odisable_mdc_flushes corks an object, keeping dirty entries associated with the object in the
+ * metadata cache.
*
* @param object_id
* IN: Identifier of the object to be corked.
**/
- public synchronized static native void H5Odisable_mdc_flushes(long object_id);
+ public synchronized static native void H5Odisable_mdc_flushes(long object_id);
/**
- * H5Oenable_mdc_flushes uncorks an object, keeping dirty entries associated with the object in the metadata cache.
+ * H5Oenable_mdc_flushes uncorks an object, keeping dirty entries associated with the object in the
+ * metadata cache.
*
* @param object_id
* IN: Identifier of the object to be uncorked.
**/
- public synchronized static native void H5Oenable_mdc_flushes(long object_id);
+ public synchronized static native void H5Oenable_mdc_flushes(long object_id);
/**
* H5Oare_mdc_flushes_disabled retrieve the object's "cork" status.
*
@@ -6804,10 +7039,10 @@ public class H5 implements java.io.Serializable {
* IN: Identifier of the object to be flushed.
*
* @return the cork status
- * TRUE if mdc flushes for the object is disabled
- * FALSE if mdc flushes for the object is not disabled
+ * TRUE if mdc flushes for the object is disabled
+ * FALSE if mdc flushes for the object is not disabled
**/
- public synchronized static native boolean H5Oare_mdc_flushes_disabled(long object_id);
+ public synchronized static native boolean H5Oare_mdc_flushes_disabled(long object_id);
// /////// unimplemented ////////
// herr_t H5Otoken_cmp(hid_t loc_id, const H5O_token_t *token1, const H5O_token_t *token2,
@@ -6831,7 +7066,7 @@ public class H5 implements java.io.Serializable {
* @return name of a property list if successful; null if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native String H5Pget_class_name(long plid) throws HDF5LibraryException;
@@ -6844,9 +7079,10 @@ public class H5 implements java.io.Serializable {
* @return a property list identifier (plist) if successful; otherwise Fail (-1).
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Pcreate(long type) throws HDF5LibraryException {
+ public static long H5Pcreate(long type) throws HDF5LibraryException
+ {
long id = _H5Pcreate(type);
if (id > 0) {
log.trace("OPEN_IDS: H5Pcreate add {}", id);
@@ -6868,7 +7104,7 @@ public class H5 implements java.io.Serializable {
* @return value for a property if successful; a negative value if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native int H5Pget(long plid, String name) throws HDF5LibraryException;
@@ -6884,9 +7120,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; a negative value if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
- public synchronized static native int H5Pset(long plid, String name, int value) throws HDF5LibraryException;
+ public synchronized static native int H5Pset(long plid, String name, int value)
+ throws HDF5LibraryException;
/**
* H5Pexist determines whether a property exists within a property list or class
@@ -6895,10 +7132,11 @@ public class H5 implements java.io.Serializable {
* IN: Identifier for the property to query
* @param name
* IN: Name of property to check for
- * @return a true value if the property exists in the property object; false if the property does not exist;
+ * @return a true value if the property exists in the property object; false if the property does not
+ * exist;
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native boolean H5Pexist(long plid, String name) throws HDF5LibraryException;
@@ -6912,7 +7150,7 @@ public class H5 implements java.io.Serializable {
* @return size of a property's value if successful; a negative value if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native long H5Pget_size(long plid, String name) throws HDF5LibraryException;
@@ -6924,7 +7162,7 @@ public class H5 implements java.io.Serializable {
* @return number of properties if successful; a negative value if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native long H5Pget_nprops(long plid) throws HDF5LibraryException;
@@ -6936,7 +7174,7 @@ public class H5 implements java.io.Serializable {
* @return a property list class if successful. Otherwise returns H5P_ROOT (-1).
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Pget_class(long plist) throws HDF5LibraryException;
@@ -6948,7 +7186,7 @@ public class H5 implements java.io.Serializable {
* @return a valid parent class object identifier if successful; a negative value if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native long H5Pget_class_parent(long plid) throws HDF5LibraryException;
@@ -6963,7 +7201,7 @@ public class H5 implements java.io.Serializable {
* @return positive value if equal; zero if unequal, a negative value if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native int H5Pequal(long plid1, long plid2) throws HDF5LibraryException;
@@ -6978,9 +7216,10 @@ public class H5 implements java.io.Serializable {
* @return TRUE if equal, FALSE if unequal
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
- public static boolean H5P_equal(long plid1, long plid2) throws HDF5LibraryException {
+ public static boolean H5P_equal(long plid1, long plid2) throws HDF5LibraryException
+ {
if (H5Pequal(plid1, plid2) == 1)
return true;
return false;
@@ -6996,7 +7235,7 @@ public class H5 implements java.io.Serializable {
* @return a positive value if equal; zero if unequal; a negative value if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native int H5Pisa_class(long plist, long pclass) throws HDF5LibraryException;
@@ -7012,10 +7251,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; a negative value if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native int H5Pcopy_prop(long dst_id, long src_id, String name)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
* H5Premove removes a property from a property list
@@ -7027,7 +7266,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; a negative value if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native int H5Premove(long plid, String name) throws HDF5LibraryException;
@@ -7041,7 +7280,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; a negative value if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native int H5Punregister(long plid, String name) throws HDF5LibraryException;
@@ -7053,9 +7292,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; a negative value if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
- public static int H5Pclose_class(long plid) throws HDF5LibraryException {
+ public static int H5Pclose_class(long plid) throws HDF5LibraryException
+ {
if (plid < 0)
return 0; // throw new HDF5LibraryException("Negative ID");;
@@ -7075,9 +7315,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static int H5Pclose(long plist) throws HDF5LibraryException {
+ public static int H5Pclose(long plist) throws HDF5LibraryException
+ {
if (plist < 0)
return 0; // throw new HDF5LibraryException("Negative ID");;
@@ -7098,9 +7339,10 @@ public class H5 implements java.io.Serializable {
* @return a property list identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Pcopy(long plist) throws HDF5LibraryException {
+ public static long H5Pcopy(long plist) throws HDF5LibraryException
+ {
long id = _H5Pcopy(plist);
if (id > 0) {
log.trace("OPEN_IDS: H5Pcopy add {}", id);
@@ -7144,11 +7386,12 @@ public class H5 implements java.io.Serializable {
* @return a property list identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Pcreate_class_nocb(long parent_class, String name) throws HDF5LibraryException {
+ public static long H5Pcreate_class_nocb(long parent_class, String name) throws HDF5LibraryException
+ {
long id = _H5Pcreate_class_nocb(parent_class, name);
- if (id > 0) {
+ if (id > 0) {
log.trace("OPEN_IDS: H5Pcreate_class_nocb add {}", id);
OPEN_IDS.add(id);
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
@@ -7156,21 +7399,27 @@ public class H5 implements java.io.Serializable {
return id;
}
- private synchronized static native long _H5Pcreate_class_nocb(long parent_class, String name) throws HDF5LibraryException;
-
-// public static long H5Pcreate_class(long parent_class, String name, H5P_cls_create_func_cb create_op, H5P_cls_create_func_t create_data,
-// H5P_cls_copy_func_cb copy_op, H5P_cls_copy_func_t copy_data, H5P_cls_close_func_cb close_op, H5P_cls_close_func_t close_data) throws HDF5LibraryException {
-// long id = _H5Pcreate_class(parent_class, name, create_op, create_data, copy_op, copy_data, close_op, close_data);
-// if (id > 0) {
-// log.trace("OPEN_IDS: H5Pcreate_class add {}", id);
-// OPEN_IDS.add(id);
-// log.trace("OPEN_IDS: {}", OPEN_IDS.size());
-// }
-// return id;
-// }
-//
-// private synchronized static native long _H5Pcreate_class(long parent_class, String name, H5P_cls_create_func_cb create_op, H5P_cls_create_func_t create_data,
-// H5P_cls_copy_func_cb copy_op, H5P_cls_copy_func_t copy_data, H5P_cls_close_func_cb close_op, H5P_cls_close_func_t close_data) throws HDF5LibraryException;
+ private synchronized static native long _H5Pcreate_class_nocb(long parent_class, String name)
+ throws HDF5LibraryException;
+
+ // public static long H5Pcreate_class(long parent_class, String name, H5P_cls_create_func_cb create_op,
+ // H5P_cls_create_func_t create_data,
+ // H5P_cls_copy_func_cb copy_op, H5P_cls_copy_func_t copy_data, H5P_cls_close_func_cb
+ // close_op, H5P_cls_close_func_t close_data) throws HDF5LibraryException {
+ // long id = _H5Pcreate_class(parent_class, name, create_op, create_data, copy_op, copy_data,
+ // close_op, close_data);
+ // if (id > 0) {
+ // log.trace("OPEN_IDS: H5Pcreate_class add {}", id);
+ // OPEN_IDS.add(id);
+ // log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ // }
+ // return id;
+ // }
+ //
+ // private synchronized static native long _H5Pcreate_class(long parent_class, String name,
+ // H5P_cls_create_func_cb create_op, H5P_cls_create_func_t create_data,
+ // H5P_cls_copy_func_cb copy_op, H5P_cls_copy_func_t copy_data, H5P_cls_close_func_cb close_op,
+ // H5P_cls_close_func_t close_data) throws HDF5LibraryException;
/**
* H5Pregister2_nocb registers a property list with no callback functions.
@@ -7187,10 +7436,13 @@ public class H5 implements java.io.Serializable {
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native void H5Pregister2_nocb(long plist_class, String name, long size, byte[] def_value) throws HDF5LibraryException;
+ public synchronized static native void H5Pregister2_nocb(long plist_class, String name, long size,
+ byte[] def_value) throws HDF5LibraryException;
-// public synchronized static native void H5Pregister2(long plist_class, String name, long size, byte[] def_value, H5P_prp_create_func_cb prp_create, H5P_prp_set_func_cb prp_set,
-// H5P_prp_get_func_cb prp_get, H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException;
+ // public synchronized static native void H5Pregister2(long plist_class, String name, long size, byte[]
+ // def_value, H5P_prp_create_func_cb prp_create, H5P_prp_set_func_cb prp_set,
+ // H5P_prp_get_func_cb prp_get, H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy,
+ // H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException;
/**
* H5Pinsert2_nocb inserts a property list with no callback functions.
@@ -7205,37 +7457,39 @@ public class H5 implements java.io.Serializable {
* IN: Default value of the property
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Pinsert2_nocb(long plist, String name, long size, byte[] value) throws HDF5LibraryException;
-
+ public synchronized static native void H5Pinsert2_nocb(long plist, String name, long size, byte[] value)
+ throws HDF5LibraryException;
- // public synchronized static native void H5Pinsert2(long plist, String name, long size, byte[] value, H5P_prp_set_func_cb prp_set, H5P_prp_get_func_cb prp_get,
- // H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException;
+ // public synchronized static native void H5Pinsert2(long plist, String name, long size, byte[] value,
+ // H5P_prp_set_func_cb prp_set, H5P_prp_get_func_cb prp_get,
+ // H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp,
+ // H5P_prp_close_func_cb prp_close) throws HDF5LibraryException;
/**
* H5Piterate iterates over the properties in a property list or class
*
* @param plist
- * IN: ID of property object to iterate over
+ * IN: ID of property object to iterate over
* @param idx
- * IN/OUT: index of the property to begin with
+ * IN/OUT: index of the property to begin with
* @param op
- * IN: function to be called with each property iterated over.
+ * IN: function to be called with each property iterated over.
* @param op_data
- * IN: iteration data from user
+ * IN: iteration data from user
*
- * @return
- * the return value of the last call to op if it was non-zero,
- * zero if all properties have been processed
+ * @return the return value of the last call to op if it was non-zero,
+ * zero if all properties have been processed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - size is null.
+ * size is null.
*
**/
- public synchronized static native int H5Piterate(long plist, int[] idx, H5P_iterate_cb op, H5P_iterate_t op_data) throws HDF5LibraryException;
+ public synchronized static native int H5Piterate(long plist, int[] idx, H5P_iterate_cb op,
+ H5P_iterate_t op_data) throws HDF5LibraryException;
// /////// Object creation property list (OCPL) routines ///////
@@ -7243,7 +7497,7 @@ public class H5 implements java.io.Serializable {
* H5Pget_attr_phase_change retrieves attribute storage phase change thresholds.
*
* @param ocpl_id
- * IN: : Object (dataset or group) creation property list identifier
+ * IN: Object (dataset or group) creation property list identifier
* @param attributes
* The maximum and minimum no. of attributes to be stored.
*
@@ -7255,13 +7509,13 @@ public class H5 implements java.io.Serializable {
* @return Returns a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - size is null.
+ * size is null.
*
**/
public synchronized static native int H5Pget_attr_phase_change(long ocpl_id, int[] attributes)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_attr_phase_change sets threshold values for attribute storage on an object. These
@@ -7277,14 +7531,16 @@ public class H5 implements java.io.Serializable {
* IN: Minimum number of attributes to be stored in dense storage (Default: 6)
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native void H5Pset_attr_phase_change(long ocpl_id, int max_compact, int min_dense)
- throws HDF5LibraryException;
+ public synchronized static native void H5Pset_attr_phase_change(long ocpl_id, int max_compact,
+ int min_dense)
+ throws HDF5LibraryException;
/**
- * H5Pget_attr_creation_order retrieves the settings for tracking and indexing attribute creation order on an object
+ * H5Pget_attr_creation_order retrieves the settings for tracking and indexing attribute creation order on
+ * an object.
*
* @param ocpl_id
* IN: Object (group or dataset) creation property list identifier
@@ -7292,14 +7548,15 @@ public class H5 implements java.io.Serializable {
* @return Flags specifying whether to track and index attribute creation order
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pget_attr_creation_order(long ocpl_id) throws HDF5LibraryException;
+ public synchronized static native int H5Pget_attr_creation_order(long ocpl_id)
+ throws HDF5LibraryException;
/**
- * H5Pset_attr_creation_order sets flags specifying whether to track and index attribute creation order on an
- * object.
+ * H5Pset_attr_creation_order sets flags specifying whether to track and index attribute creation order on
+ * an object.
*
* @param ocpl_id
* IN: Object creation property list identifier
@@ -7309,15 +7566,15 @@ public class H5 implements java.io.Serializable {
* @return Returns a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pset_attr_creation_order(long ocpl_id, int crt_order_flags)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
- * H5Pget_obj_track_times queries the object creation property list, ocpl_id, to determine whether object times are
- * being recorded.
+ * H5Pget_obj_track_times queries the object creation property list, ocpl_id, to determine whether object
+ * times are being recorded.
*
* @param ocpl_id
* IN: Object creation property list identifier
@@ -7325,14 +7582,15 @@ public class H5 implements java.io.Serializable {
* @return TRUE or FALSE, specifying whether object times are being recorded
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native boolean H5Pget_obj_track_times(long ocpl_id) throws HDF5LibraryException;
+ public synchronized static native boolean H5Pget_obj_track_times(long ocpl_id)
+ throws HDF5LibraryException;
/**
- * H5Pset_obj_track_times sets a property in the object creation property list, ocpl_id, that governs the recording
- * of times associated with an object.
+ * H5Pset_obj_track_times sets a property in the object creation property list, ocpl_id, that governs the
+ * recording of times associated with an object.
*
* @param ocpl_id
* IN: Object creation property list identifier
@@ -7341,11 +7599,11 @@ public class H5 implements java.io.Serializable {
* IN: TRUE or FALSE, specifying whether object times are to be tracked
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native void H5Pset_obj_track_times(long ocpl_id, boolean track_times)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
* H5Pmodify_filter modifies the specified FILTER in the transient or permanent output filter pipeline
@@ -7387,16 +7645,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name or an array is null.
+ * name or an array is null.
*
**/
public synchronized static native int H5Pmodify_filter(long plist, long filter, int flags, long cd_nelmts,
- int[] cd_values) throws HDF5LibraryException, NullPointerException;
+ int[] cd_values)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Pset_filter adds the specified filter and corresponding properties to the end of an output filter pipeline.
+ * H5Pset_filter adds the specified filter and corresponding properties to the end of an output filter
+ * pipeline.
*
* @param plist
* IN: Property list identifier.
@@ -7412,14 +7672,14 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pset_filter(long plist, int filter, int flags, long cd_nelmts,
- int[] cd_values) throws HDF5LibraryException;
+ int[] cd_values) throws HDF5LibraryException;
/**
- * H5Pget_nfilters returns the number of filters defined in the filter pipeline associated with the property list
- * plist.
+ * H5Pget_nfilters returns the number of filters defined in the filter pipeline associated with the
+ * property list plist.
*
* @param plist
* IN: Property list identifier.
@@ -7427,18 +7687,19 @@ public class H5 implements java.io.Serializable {
* @return the number of filters in the pipeline if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pget_nfilters(long plist) throws HDF5LibraryException;
/**
- * H5Pget_filter returns information about a filter, specified by its filter number, in a filter pipeline, specified
- * by the property list with which it is associated.
+ * H5Pget_filter returns information about a filter, specified by its filter number, in a filter pipeline,
+ * specified by the property list with which it is associated.
*
* @param plist
* IN: Property list identifier.
* @param filter_number
- * IN: Sequence number within the filter pipeline of the filter for which information is sought.
+ * IN: Sequence number within the filter pipeline of the filter for which information is
+ * sought.
* @param flags
* OUT: Bit vector specifying certain general properties of the filter.
* @param cd_nelmts
@@ -7455,44 +7716,49 @@ public class H5 implements java.io.Serializable {
* @return the filter identification number if successful. Otherwise returns H5Z_FILTER_ERROR (-1).
*
* @exception ArrayIndexOutOfBoundsException
- * Fatal error on Copyback
+ * Fatal error on Copyback
* @exception ArrayStoreException
- * Fatal error on Copyback
+ * Fatal error on Copyback
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name or an array is null.
+ * name or an array is null.
*
**/
- public static int H5Pget_filter(long plist, int filter_number, int[] flags, long[] cd_nelmts, int[] cd_values,
- long namelen, String[] name, int[] filter_config) throws ArrayIndexOutOfBoundsException,
- ArrayStoreException, HDF5LibraryException, NullPointerException {
- return H5Pget_filter2(plist, filter_number, flags, cd_nelmts, cd_values, namelen, name, filter_config);
+ public static int H5Pget_filter(long plist, int filter_number, int[] flags, long[] cd_nelmts,
+ int[] cd_values, long namelen, String[] name, int[] filter_config)
+ throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException
+ {
+ return H5Pget_filter2(plist, filter_number, flags, cd_nelmts, cd_values, namelen, name,
+ filter_config);
}
/**
- * H5Pget_filter2 returns information about a filter, specified by its filter number, in a filter pipeline,
- * specified by the property list with which it is associated.
+ * H5Pget_filter2 returns information about a filter, specified by its filter number, in a filter
+ * pipeline, specified by the property list with which it is associated.
*
- * @see public static int H5Pget_filter(int plist, int filter_number, int[] flags, int[] cd_nelmts, int[] cd_values,
- * int namelen, String[] name, int[] filter_config)
+ * @see public static int H5Pget_filter(int plist, int filter_number, int[] flags, int[] cd_nelmts, int[]
+ * cd_values, int namelen, String[] name, int[] filter_config)
*
**/
- private synchronized static native int H5Pget_filter2(long plist, int filter_number, int[] flags, long[] cd_nelmts,
- int[] cd_values, long namelen, String[] name, int[] filter_config) throws ArrayIndexOutOfBoundsException,
- ArrayStoreException, HDF5LibraryException, NullPointerException;
+ private synchronized static native int H5Pget_filter2(long plist, int filter_number, int[] flags,
+ long[] cd_nelmts, int[] cd_values, long namelen,
+ String[] name, int[] filter_config)
+ throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException,
+ NullPointerException;
/**
- * H5Pget_filter_by_id returns information about the filter specified in filter_id, a filter identifier. plist_id
- * must be a dataset or group creation property list and filter_id must be in the associated filter pipeline. The
- * filter_id and flags parameters are used in the same manner as described in the discussion of H5Pset_filter. Aside
- * from the fact that they are used for output, the parameters cd_nelmts and cd_values[] are used in the same manner
- * as described in the discussion of H5Pset_filter. On input, the cd_nelmts parameter indicates the number of
- * entries in the cd_values[] array allocated by the calling program; on exit it contains the number of values
- * defined by the filter. On input, the namelen parameter indicates the number of characters allocated for the
- * filter name by the calling program in the array name[]. On exit name[] contains the name of the filter with one
- * character of the name in each element of the array. If the filter specified in filter_id is not set for the
- * property list, an error will be returned and H5Pget_filter_by_id1 will fail.
+ * H5Pget_filter_by_id returns information about the filter specified in filter_id, a filter identifier.
+ * plist_id must be a dataset or group creation property list and filter_id must be in the associated
+ * filter pipeline. The filter_id and flags parameters are used in the same manner as described in the
+ * discussion of H5Pset_filter. Aside from the fact that they are used for output, the parameters
+ * cd_nelmts and cd_values[] are used in the same manner as described in the discussion of H5Pset_filter.
+ * On input, the cd_nelmts parameter indicates the number of entries in the cd_values[] array allocated by
+ * the calling program; on exit it contains the number of values defined by the filter. On input, the
+ * namelen parameter indicates the number of characters allocated for the filter name by the calling
+ * program in the array name[]. On exit name[] contains the name of the filter with one character of the
+ * name in each element of the array. If the filter specified in filter_id is not set for the property
+ * list, an error will be returned and H5Pget_filter_by_id1 will fail.
*
* @param plist_id
* IN: Property list identifier.
@@ -7514,24 +7780,26 @@ public class H5 implements java.io.Serializable {
* @return the filter identification number if successful. Otherwise returns H5Z_FILTER_ERROR (-1).
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception ArrayIndexOutOfBoundsException
- * Fatal error on Copyback
+ * Fatal error on Copyback
* @exception ArrayStoreException
- * Fatal error on Copyback
+ * Fatal error on Copyback
* @exception NullPointerException
- * - name or an array is null.
+ * name or an array is null.
*
**/
public static int H5Pget_filter_by_id(long plist_id, long filter_id, int[] flags, long[] cd_nelmts,
- int[] cd_values, long namelen, String[] name, int[] filter_config) throws ArrayIndexOutOfBoundsException,
- ArrayStoreException, HDF5LibraryException, NullPointerException {
- return H5Pget_filter_by_id2(plist_id, filter_id, flags, cd_nelmts, cd_values, namelen, name, filter_config);
+ int[] cd_values, long namelen, String[] name, int[] filter_config)
+ throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException
+ {
+ return H5Pget_filter_by_id2(plist_id, filter_id, flags, cd_nelmts, cd_values, namelen, name,
+ filter_config);
}
/**
- * H5Pget_filter_by_id2 returns information about a filter, specified by its filter id, in a filter pipeline,
- * specified by the property list with which it is associated.
+ * H5Pget_filter_by_id2 returns information about a filter, specified by its filter id, in a filter
+ * pipeline, specified by the property list with which it is associated.
*
* @param plist_id
* IN: Property list identifier.
@@ -7553,15 +7821,15 @@ public class H5 implements java.io.Serializable {
* @return the filter identification number if successful. Otherwise returns H5Z_FILTER_ERROR (-1).
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name or an array is null.
+ * name or an array is null.
*
**/
- public synchronized static native int H5Pget_filter_by_id2(long plist_id, long filter_id, int[] flags,
- long[] cd_nelmts, int[] cd_values, long namelen, String[] name, int[] filter_config)
- throws HDF5LibraryException, NullPointerException;
-
+ public synchronized static native int
+ H5Pget_filter_by_id2(long plist_id, long filter_id, int[] flags, long[] cd_nelmts, int[] cd_values,
+ long namelen, String[] name, int[] filter_config)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pall_filters_avail query to verify that all the filters set
@@ -7575,10 +7843,10 @@ public class H5 implements java.io.Serializable {
* FALSE if one or more filters not currently available.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native boolean H5Pall_filters_avail(long dcpl_id) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native boolean H5Pall_filters_avail(long dcpl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Premove_filter deletes a filter from the dataset creation property list;
@@ -7592,9 +7860,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value and the size of the user block; if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Premove_filter(long obj_id, long filter) throws HDF5LibraryException;
+ public synchronized static native int H5Premove_filter(long obj_id, long filter)
+ throws HDF5LibraryException;
/**
* H5Pset_deflate sets the compression method for a dataset.
@@ -7607,7 +7876,7 @@ public class H5 implements java.io.Serializable {
* @return non-negative if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pset_deflate(long plist, int level) throws HDF5LibraryException;
@@ -7621,10 +7890,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value and the size of the user block; if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Pset_fletcher32(long plist) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Pset_fletcher32(long plist)
+ throws HDF5LibraryException, NullPointerException;
// /////// File creation property list (FCPL) routines ///////
@@ -7639,12 +7908,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value and the size of the user block; if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - size is null.
+ * size is null.
**/
- public synchronized static native int H5Pget_userblock(long plist, long[] size) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Pget_userblock(long plist, long[] size)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_userblock sets the user block size of a file creation property list.
@@ -7657,13 +7926,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pset_userblock(long plist, long size) throws HDF5LibraryException;
/**
- * H5Pget_sizes retrieves the size of the offsets and lengths used in an HDF5 file. This function is only valid for
- * file creation property lists.
+ * H5Pget_sizes retrieves the size of the offsets and lengths used in an HDF5 file. This function is only
+ * valid for file creation property lists.
*
* @param plist
* IN: Identifier of property list to query.
@@ -7677,14 +7946,14 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value with the sizes initialized; if successful;
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - size is null.
+ * size is null.
* @exception IllegalArgumentException
- * - size is invalid.
+ * size is invalid.
**/
- public synchronized static native int H5Pget_sizes(long plist, long[] size) throws HDF5LibraryException,
- NullPointerException, IllegalArgumentException;
+ public synchronized static native int H5Pget_sizes(long plist, long[] size)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Pset_sizes sets the byte size of the offsets and lengths used to address objects in an HDF5 file.
@@ -7699,13 +7968,14 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pset_sizes(long plist, int sizeof_addr, int sizeof_size)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
- * H5Pget_sym_k retrieves the size of the symbol table B-tree 1/2 rank and the symbol table leaf node 1/2 size.
+ * H5Pget_sym_k retrieves the size of the symbol table B-tree 1/2 rank and the symbol table leaf node 1/2
+ * size.
*
* @param plist
* IN: Property list to query.
@@ -7720,14 +7990,14 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - size is null.
+ * size is null.
* @exception IllegalArgumentException
- * - size is invalid.
+ * size is invalid.
**/
- public synchronized static native int H5Pget_sym_k(long plist, int[] size) throws HDF5LibraryException,
- NullPointerException, IllegalArgumentException;
+ public synchronized static native int H5Pget_sym_k(long plist, int[] size)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Pset_sym_k sets the size of parameters used to control the symbol table nodes.
@@ -7742,9 +8012,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Pset_sym_k(long plist, int ik, int lk) throws HDF5LibraryException;
+ public synchronized static native int H5Pset_sym_k(long plist, int ik, int lk)
+ throws HDF5LibraryException;
/**
* H5Pget_istore_k queries the 1/2 rank of an indexed storage B-tree.
@@ -7757,15 +8028,16 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - ik array is null.
+ * ik array is null.
**/
- public synchronized static native int H5Pget_istore_k(long plist, int[] ik) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Pget_istore_k(long plist, int[] ik)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Pset_istore_k sets the size of the parameter used to control the B-trees for indexing chunked datasets.
+ * H5Pset_istore_k sets the size of the parameter used to control the B-trees for indexing chunked
+ * datasets.
*
* @param plist
* IN: Identifier of property list to query.
@@ -7775,46 +8047,47 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pset_istore_k(long plist, int ik) throws HDF5LibraryException;
/**
- * H5Pget_shared_mesg_nindexes retrieves number of shared object header message indexes in file creation property
- * list.
+ * H5Pget_shared_mesg_nindexes retrieves number of shared object header message indexes in file creation
+ * property list.
*
* @param fcpl_id
* IN: : File creation property list identifier
*
- * @return nindexes, the number of shared object header message indexes available in files created with this
- * property list
+ * @return nindexes, the number of shared object header message indexes available in files created with
+ * this property list
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pget_shared_mesg_nindexes(long fcpl_id) throws HDF5LibraryException;
+ public synchronized static native int H5Pget_shared_mesg_nindexes(long fcpl_id)
+ throws HDF5LibraryException;
/**
- * H5Pset_shared_mesg_nindexes sets the number of shared object header message indexes in the specified file
- * creation property list.
+ * H5Pset_shared_mesg_nindexes sets the number of shared object header message indexes in the specified
+ * file creation property list.
*
* @param plist_id
* IN: File creation property list
* @param nindexes
- * IN: Number of shared object header message indexes to be available in files created with this property
- * list
+ * IN: Number of shared object header message indexes to be available in files created with
+ * this property list
*
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Invalid value of nindexes
+ * Invalid value of nindexes
*
**/
public synchronized static native int H5Pset_shared_mesg_nindexes(long plist_id, int nindexes)
- throws HDF5LibraryException, IllegalArgumentException;
+ throws HDF5LibraryException, IllegalArgumentException;
/**
* H5Pget_shared_mesg_index Retrieves the configuration settings for a shared message index.
@@ -7834,15 +8107,16 @@ public class H5 implements java.io.Serializable {
* @return Returns a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - mesg_info is null.
+ * mesg_info is null.
* @exception IllegalArgumentException
- * - Invalid value of nindexes
+ * Invalid value of nindexes
*
**/
- public synchronized static native int H5Pget_shared_mesg_index(long fcpl_id, int index_num, int[] mesg_info)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ public synchronized static native int H5Pget_shared_mesg_index(long fcpl_id, int index_num,
+ int[] mesg_info)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Pset_shared_mesg_index Configures the specified shared object header message index
@@ -7859,13 +8133,14 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Invalid value of nindexes
+ * Invalid value of nindexes
*
**/
- public synchronized static native int H5Pset_shared_mesg_index(long fcpl_id, int index_num, int mesg_type_flags,
- int min_mesg_size) throws HDF5LibraryException, IllegalArgumentException;
+ public synchronized static native int H5Pset_shared_mesg_index(long fcpl_id, int index_num,
+ int mesg_type_flags, int min_mesg_size)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
* H5Pget_shared_mesg_phase_change retrieves shared object header message phase change information.
@@ -7876,20 +8151,21 @@ public class H5 implements java.io.Serializable {
* The threshold values for storage of shared object header message indexes in a file.
*
* <pre>
- * size[0] = Threshold above which storage of a shared object header message index shifts from list to B-tree
- * size[1] = Threshold below which storage of a shared object header message index reverts to list format
+ * size[0] = Threshold above which storage of a shared object header message index shifts from list
+ * to B-tree size[1] = Threshold below which storage of a shared object header message index reverts
+ * to list format
* </pre>
*
* @return Returns a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - size is null.
+ * size is null.
*
**/
public synchronized static native int H5Pget_shared_mesg_phase_change(long fcpl_id, int[] size)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_shared_mesg_phase_change sets shared object header message storage phase change thresholds.
@@ -7897,24 +8173,28 @@ public class H5 implements java.io.Serializable {
* @param fcpl_id
* IN: File creation property list identifier
* @param max_list
- * IN: Threshold above which storage of a shared object header message index shifts from list to B-tree
+ * IN: Threshold above which storage of a shared object header message index shifts from list
+ * to B-tree
* @param min_btree
- * IN: Threshold below which storage of a shared object header message index reverts to list format
+ * IN: Threshold below which storage of a shared object header message index reverts to list
+ * format
*
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Invalid values of max_list and min_btree.
+ * Invalid values of max_list and min_btree.
*
**/
- public synchronized static native int H5Pset_shared_mesg_phase_change(long fcpl_id, int max_list, int min_btree)
- throws HDF5LibraryException, IllegalArgumentException;
+ public synchronized static native int H5Pset_shared_mesg_phase_change(long fcpl_id, int max_list,
+ int min_btree)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
- * H5Pset_file_space_strategy sets the file space management strategy for the file associated with fcpl_id to strategy.
- * There are four strategies that applications can select and they are described in the Parameters section.
+ * H5Pset_file_space_strategy sets the file space management strategy for the file associated with fcpl_id
+ * to strategy. There are four strategies that applications can select and they are described in the
+ * Parameters section.
*
* @param fcpl_id
* IN: File creation property list identifier
@@ -7924,7 +8204,8 @@ public class H5 implements java.io.Serializable {
* Mechanisms: free-space managers, aggregators, and virtual file drivers
* This is the library default when not set.
* H5F_FSPACE_STRATEGY_PAGE
- * Mechanisms: free-space managers with embedded paged aggregation and virtual file drivers
+ * Mechanisms: free-space managers with embedded paged aggregation and virtual file
+ * drivers
* H5F_FSPACE_STRATEGY_AGGR
* Mechanisms: aggregators and virtual file drivers
* H5F_FSPACE_STRATEGY_NONE
@@ -7932,20 +8213,23 @@ public class H5 implements java.io.Serializable {
* @param persist
* IN: True to persist free-space.
* @param threshold
- * IN: The free-space section threshold. The library default is 1, which is to track all free-space sections.
- * Passing a value of zero (0) indicates that the value of threshold is not to be modified.
+ * IN: The free-space section threshold. The library default is 1, which is to track all
+ * free-space sections. Passing a value of zero (0) indicates that the value of threshold
+ * is not to be modified.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Invalid values of max_list and min_btree.
+ * Invalid values of max_list and min_btree.
*
**/
- public synchronized static native void H5Pset_file_space_strategy(long fcpl_id, int strategy, boolean persist, long threshold)
- throws HDF5LibraryException, IllegalArgumentException;
+ public synchronized static native void H5Pset_file_space_strategy(long fcpl_id, int strategy,
+ boolean persist, long threshold)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
- * H5Pget_file_space_strategy provides the means for applications to manage the HDF5 file's file space strategy for their specific needs.
+ * H5Pget_file_space_strategy provides the means for applications to manage the HDF5 file's file space
+ * strategy for their specific needs.
*
* @param fcpl_id
* IN: File creation property list identifier
@@ -7957,16 +8241,18 @@ public class H5 implements java.io.Serializable {
* @return the current free-space strategy.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Invalid values of max_list and min_btree.
+ * Invalid values of max_list and min_btree.
*
**/
- public synchronized static native int H5Pget_file_space_strategy(long fcpl_id, boolean[] persist, long[] threshold)
- throws HDF5LibraryException, IllegalArgumentException;
+ public synchronized static native int H5Pget_file_space_strategy(long fcpl_id, boolean[] persist,
+ long[] threshold)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
- * H5Pget_file_space_strategy_persist provides the means for applications to manage the HDF5 file's file space strategy for their specific needs.
+ * H5Pget_file_space_strategy_persist provides the means for applications to manage the HDF5 file's file
+ * space strategy for their specific needs.
*
* @param fcpl_id
* IN: File creation property list identifier
@@ -7974,16 +8260,17 @@ public class H5 implements java.io.Serializable {
* @return the current free-space persistence.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Invalid values of max_list and min_btree.
+ * Invalid values of max_list and min_btree.
*
**/
public synchronized static native boolean H5Pget_file_space_strategy_persist(long fcpl_id)
- throws HDF5LibraryException, IllegalArgumentException;
+ throws HDF5LibraryException, IllegalArgumentException;
/**
- * H5Pget_file_space_strategy_threshold provides the means for applications to manage the HDF5 file's file space strategy for their specific needs.
+ * H5Pget_file_space_strategy_threshold provides the means for applications to manage the HDF5 file's file
+ * space strategy for their specific needs.
*
* @param fcpl_id
* IN: File creation property list identifier
@@ -7991,54 +8278,55 @@ public class H5 implements java.io.Serializable {
* @return the current free-space section threshold.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Invalid values of max_list and min_btree.
- *
- **/
- public synchronized static native long H5Pget_file_space_strategy_threshold(long fcpl_id)
- throws HDF5LibraryException, IllegalArgumentException;
-
- /**
- * H5Pset_file_space_page_size retrieves the file space page size for aggregating small metadata or raw data.
- *
- * @param fcpl_id
- * IN: File creation property list identifier
- * @param page_size
- * IN: the file space page size.
- *
- *
- * @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
- * @exception IllegalArgumentException
- * - Invalid values of max_list and min_btree.
- *
- **/
- public synchronized static native void H5Pset_file_space_page_size(long fcpl_id, long page_size)
- throws HDF5LibraryException, IllegalArgumentException;
-
- /**
- * H5Pget_file_space_page_size Sets the file space page size for paged aggregation.
- *
- * @param fcpl_id
- * IN: File creation property list identifier
- *
- * @return the current file space page size.
- *
- * @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
- * @exception IllegalArgumentException
- * - Invalid values of max_list and min_btree.
- *
- **/
- public synchronized static native long H5Pget_file_space_page_size(long fcpl_id)
- throws HDF5LibraryException, IllegalArgumentException;
+ * Invalid values of max_list and min_btree.
+ *
+ **/
+ public synchronized static native long H5Pget_file_space_strategy_threshold(long fcpl_id)
+ throws HDF5LibraryException, IllegalArgumentException;
+ /**
+ * H5Pset_file_space_page_size retrieves the file space page size for aggregating small metadata or raw
+ * data.
+ *
+ * @param fcpl_id
+ * IN: File creation property list identifier
+ * @param page_size
+ * IN: the file space page size.
+ *
+ *
+ * @exception HDF5LibraryException
+ * Error from the HDF-5 Library.
+ * @exception IllegalArgumentException
+ * Invalid values of max_list and min_btree.
+ *
+ **/
+ public synchronized static native void H5Pset_file_space_page_size(long fcpl_id, long page_size)
+ throws HDF5LibraryException, IllegalArgumentException;
+
+ /**
+ * H5Pget_file_space_page_size Sets the file space page size for paged aggregation.
+ *
+ * @param fcpl_id
+ * IN: File creation property list identifier
+ *
+ * @return the current file space page size.
+ *
+ * @exception HDF5LibraryException
+ * Error from the HDF-5 Library.
+ * @exception IllegalArgumentException
+ * Invalid values of max_list and min_btree.
+ *
+ **/
+ public synchronized static native long H5Pget_file_space_page_size(long fcpl_id)
+ throws HDF5LibraryException, IllegalArgumentException;
// /////// File access property list (FAPL) routines ///////
/**
- * H5Pget_alignment retrieves the current settings for alignment properties from a file access property list.
+ * H5Pget_alignment retrieves the current settings for alignment properties from a file access property
+ * list.
*
* @param plist
* IN: Identifier of a file access property list.
@@ -8052,18 +8340,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - alignment array is null.
+ * alignment array is null.
* @exception IllegalArgumentException
- * - alignment array is invalid.
+ * alignment array is invalid.
**/
- public synchronized static native int H5Pget_alignment(long plist, long[] alignment) throws HDF5LibraryException,
- NullPointerException, IllegalArgumentException;
+ public synchronized static native int H5Pget_alignment(long plist, long[] alignment)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
- * H5Pset_alignment sets the alignment properties of a file access property list so that any file object &gt;=
- * THRESHOLD bytes will be aligned on an address which is a multiple of ALIGNMENT.
+ * H5Pset_alignment sets the alignment properties of a file access property list so that any file object
+ * &gt;= THRESHOLD bytes will be aligned on an address which is a multiple of ALIGNMENT.
*
* @param plist
* IN: Identifier for a file access property list.
@@ -8075,21 +8363,21 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pset_alignment(long plist, long threshold, long alignment)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
- * H5Pget_driver returns the identifier of the low-level file driver associated with the file access property list
- * or data transfer property list plid.
+ * H5Pget_driver returns the identifier of the low-level file driver associated with the file access
+ * property list or data transfer property list plid.
*
* @param plid
* IN: File access or data transfer property list identifier.
* @return a valid low-level driver identifier if successful; a negative value if failed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*/
public synchronized static native long H5Pget_driver(long plid) throws HDF5LibraryException;
@@ -8102,7 +8390,7 @@ public class H5 implements java.io.Serializable {
* @return the offset.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native long H5Pget_family_offset(long fapl_id) throws HDF5LibraryException;
@@ -8118,14 +8406,15 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pset_family_offset(long fapl_id, long offset) throws HDF5LibraryException;
+ public synchronized static native int H5Pset_family_offset(long fapl_id, long offset)
+ throws HDF5LibraryException;
/**
- * Retrieves the maximum possible number of elements in the meta data cache and the maximum possible number of bytes
- * and the RDCC_W0 value in the raw data chunk cache.
+ * Retrieves the maximum possible number of elements in the meta data cache and the maximum possible
+ * number of bytes and the RDCC_W0 value in the raw data chunk cache.
*
* @param plist
* IN: Identifier of the file access property list.
@@ -8141,16 +8430,17 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an array is null.
+ * an array is null.
**/
public synchronized static native int H5Pget_cache(long plist, int[] mdc_nelmts, long[] rdcc_nelmts,
- long[] rdcc_nbytes, double[] rdcc_w0) throws HDF5LibraryException, NullPointerException;
+ long[] rdcc_nbytes, double[] rdcc_w0)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Pset_cache sets the number of elements (objects) in the meta data cache and the total number of bytes in the
- * raw data chunk cache.
+ * H5Pset_cache sets the number of elements (objects) in the meta data cache and the total number of bytes
+ * in the raw data chunk cache.
*
* @param plist
* IN: Identifier of the file access property list.
@@ -8166,14 +8456,15 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Pset_cache(long plist, int mdc_nelmts, long rdcc_nelmts, long rdcc_nbytes,
- double rdcc_w0) throws HDF5LibraryException;
+ public synchronized static native int H5Pset_cache(long plist, int mdc_nelmts, long rdcc_nelmts,
+ long rdcc_nbytes, double rdcc_w0)
+ throws HDF5LibraryException;
/**
- * H5Pget_mdc_config gets the initial metadata cache configuration contained in a file access property list.
- * This configuration is used when the file is opened.
+ * H5Pget_mdc_config gets the initial metadata cache configuration contained in a file access property
+ * list. This configuration is used when the file is opened.
*
* @param plist_id
* IN: Identifier of the file access property list.
@@ -8181,14 +8472,15 @@ public class H5 implements java.io.Serializable {
* @return A buffer(H5AC_cache_config_t) for the current metadata cache configuration information
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native H5AC_cache_config_t H5Pget_mdc_config(long plist_id) throws HDF5LibraryException;
+ public synchronized static native H5AC_cache_config_t H5Pget_mdc_config(long plist_id)
+ throws HDF5LibraryException;
/**
- * H5Pset_mdc_config sets the initial metadata cache configuration contained in a file access property list and
- * loads it into the instance of H5AC_cache_config_t pointed to by the config_ptr parameter. This configuration is
- * used when the file is opened.
+ * H5Pset_mdc_config sets the initial metadata cache configuration contained in a file access property
+ * list and loads it into the instance of H5AC_cache_config_t pointed to by the config_ptr parameter. This
+ * configuration is used when the file is opened.
*
* @param plist_id
* IN: Identifier of the file access property list.
@@ -8196,14 +8488,14 @@ public class H5 implements java.io.Serializable {
* IN: H5AC_cache_config_t, the initial metadata cache configuration.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Pset_mdc_config(long plist_id, H5AC_cache_config_t config_ptr)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
- * H5Pget_gc_references Returns the current setting for the garbage collection references property from a file access
- * property list.
+ * H5Pget_gc_references Returns the current setting for the garbage collection references property from a
+ * file access property list.
*
* @param fapl_id
* IN File access property list
@@ -8211,13 +8503,13 @@ public class H5 implements java.io.Serializable {
* @return GC is on (true) or off (false)
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native boolean H5Pget_gc_references(long fapl_id) throws HDF5LibraryException;
/**
- * H5Pset_gc_references Sets the flag for garbage collecting references for the file. Default value for garbage
- * collecting references is off.
+ * H5Pset_gc_references Sets the flag for garbage collecting references for the file. Default value for
+ * garbage collecting references is off.
*
* @param fapl_id
* IN File access property list
@@ -8227,10 +8519,10 @@ public class H5 implements java.io.Serializable {
* @return non-negative if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pset_gc_references(long fapl_id, boolean gc_ref)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
* H5Pget_fclose_degree returns the degree for the file close behavior for a file access
@@ -8242,10 +8534,10 @@ public class H5 implements java.io.Serializable {
* @return the degree for the file close behavior
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Pget_fclose_degree(long fapl_id) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Pget_fclose_degree(long fapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_fclose_degree sets the degree for the file close behavior.
@@ -8258,10 +8550,10 @@ public class H5 implements java.io.Serializable {
* @return non-negative if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Pset_fclose_degree(long fapl_id, int degree) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Pset_fclose_degree(long fapl_id, int degree)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pget_meta_block_size the current metadata block size setting.
@@ -8272,7 +8564,7 @@ public class H5 implements java.io.Serializable {
* @return the minimum size, in bytes, of metadata block allocations.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native long H5Pget_meta_block_size(long fapl_id) throws HDF5LibraryException;
@@ -8286,14 +8578,15 @@ public class H5 implements java.io.Serializable {
* IN: Minimum size, in bytes, of metadata block allocations.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native void H5Pset_meta_block_size(long fapl_id, long size) throws HDF5LibraryException;
+ public synchronized static native void H5Pset_meta_block_size(long fapl_id, long size)
+ throws HDF5LibraryException;
/**
* H5Pget_sieve_buf_size retrieves the current settings for the data sieve buffer size
- * property from a file access property list.
+ * property from a file access property list.
*
* @param fapl_id
* IN: Identifier for property list to query.
@@ -8301,7 +8594,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value and the size of the user block; if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Pget_sieve_buf_size(long fapl_id) throws HDF5LibraryException;
@@ -8323,12 +8616,14 @@ public class H5 implements java.io.Serializable {
* IN: maximum size of the data seive buffer.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Pset_sieve_buf_size(long fapl_id, long size) throws HDF5LibraryException;
+ public synchronized static native void H5Pset_sieve_buf_size(long fapl_id, long size)
+ throws HDF5LibraryException;
/**
- * H5Pget_small_data_block_size retrieves the size of a block of small data in a file creation property list.
+ * H5Pget_small_data_block_size retrieves the size of a block of small data in a file creation property
+ * list.
*
* @param plist
* IN: Identifier for property list to query.
@@ -8336,13 +8631,14 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value and the size of the user block; if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native long H5Pget_small_data_block_size(long plist) throws HDF5LibraryException;
+ public synchronized static native long H5Pget_small_data_block_size(long plist)
+ throws HDF5LibraryException;
/**
- * H5Pset_small_data_block_size reserves blocks of size bytes for the contiguous storage of the raw data portion of
- * small datasets.
+ * H5Pset_small_data_block_size reserves blocks of size bytes for the contiguous storage of the raw data
+ * portion of small datasets.
*
* @param plist
* IN: Identifier of property list to modify.
@@ -8352,14 +8648,14 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pset_small_data_block_size(long plist, long size)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
- * H5Pget_libver_bounds retrieves the lower and upper bounds on the HDF5 Library versions that indirectly determine
- * the object formats versions used when creating objects in the file.
+ * H5Pget_libver_bounds retrieves the lower and upper bounds on the HDF5 Library versions that indirectly
+ * determine the object formats versions used when creating objects in the file.
*
* @param fapl_id
* IN: File access property list identifier
@@ -8374,17 +8670,17 @@ public class H5 implements java.io.Serializable {
* @return Returns a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - size is null.
+ * size is null.
*
**/
- public synchronized static native int H5Pget_libver_bounds(long fapl_id, int[] libver) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Pget_libver_bounds(long fapl_id, int[] libver)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Pset_libver_bounds Sets bounds on library versions, and indirectly format versions, to be used when creating
- * objects
+ * H5Pset_libver_bounds Sets bounds on library versions, and indirectly format versions, to be used when
+ * creating objects
*
* @param fapl_id
* IN: File access property list identifier
@@ -8397,13 +8693,13 @@ public class H5 implements java.io.Serializable {
* @return Returns a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Argument is Illegal
+ * Argument is Illegal
*
**/
public synchronized static native int H5Pset_libver_bounds(long fapl_id, int low, int high)
- throws HDF5LibraryException, IllegalArgumentException;
+ throws HDF5LibraryException, IllegalArgumentException;
/**
* H5Pget_elink_file_cache_size retrieves the size of the external link open file cache.
@@ -8414,13 +8710,15 @@ public class H5 implements java.io.Serializable {
* @return External link open file cache size in number of files.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pget_elink_file_cache_size(long fapl_id) throws HDF5LibraryException;
+ public synchronized static native int H5Pget_elink_file_cache_size(long fapl_id)
+ throws HDF5LibraryException;
/**
- * H5Pset_elink_file_cache_size sets the number of files that can be held open in an external link open file cache.
+ * H5Pset_elink_file_cache_size sets the number of files that can be held open in an external link open
+ * file cache.
*
* @param fapl_id
* IN: File access property list identifier
@@ -8428,11 +8726,11 @@ public class H5 implements java.io.Serializable {
* IN: External link open file cache size in number of files.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native void H5Pset_elink_file_cache_size(long fapl_id, int efc_size)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
* H5Pset_mdc_log_options sets metadata cache logging options.
@@ -8447,13 +8745,14 @@ public class H5 implements java.io.Serializable {
* IN: Whether the logging begins as soon as the file is opened or created.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - location is null.
+ * location is null.
*
**/
- public synchronized static native void H5Pset_mdc_log_options(long fapl_id, boolean is_enabled, String location, boolean start_on_access)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Pset_mdc_log_options(long fapl_id, boolean is_enabled,
+ String location, boolean start_on_access)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pget_mdc_log_options gets metadata cache logging options.
@@ -8463,19 +8762,21 @@ public class H5 implements java.io.Serializable {
* @param mdc_log_options
* the options
* mdc_logging_options[0] = is_enabled, whether logging is enabled
- * mdc_logging_options[1] = start_on_access, whether the logging begins as soon as the file is opened or created
+ * mdc_logging_options[1] = start_on_access, whether the logging begins as soon as the file is
+ * opened or created
*
* @return the location of log in UTF-8/ASCII (file path/name) (On Windows, this must be ASCII).
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native String H5Pget_mdc_log_options(long fapl_id, boolean[] mdc_log_options)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
- * H5Pget_metadata_read_attempts retrieves the number of read attempts that is set in the file access property list plist_id.
+ * H5Pget_metadata_read_attempts retrieves the number of read attempts that is set in the file access
+ * property list plist_id.
*
* @param plist_id
* IN: File access property list identifier
@@ -8483,18 +8784,20 @@ public class H5 implements java.io.Serializable {
* @return The number of read attempts.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native long H5Pget_metadata_read_attempts(long plist_id) throws HDF5LibraryException;
+ public synchronized static native long H5Pget_metadata_read_attempts(long plist_id)
+ throws HDF5LibraryException;
/**
- * H5Pset_metadata_read_attempts sets the number of reads that the library will try when reading checksummed
- * metadata in an HDF5 file opened with SWMR access. When reading such metadata, the library will compare the
- * checksum computed for the metadata just read with the checksum stored within the piece of checksum. When
- * performing SWMR operations on a file, the checksum check might fail when the library reads data on a system
- * that is not atomic. To remedy such situations, the library will repeatedly read the piece of metadata until
- * the check passes or finally fails the read when the allowed number of attempts is reached.
+ * H5Pset_metadata_read_attempts sets the number of reads that the library will try when reading
+ * checksummed metadata in an HDF5 file opened with SWMR access. When reading such metadata, the library
+ * will compare the checksum computed for the metadata just read with the checksum stored within the piece
+ * of checksum. When performing SWMR operations on a file, the checksum check might fail when the library
+ * reads data on a system that is not atomic. To remedy such situations, the library will repeatedly read
+ * the piece of metadata until the check passes or finally fails the read when the allowed number of
+ * attempts is reached.
*
* @param plist_id
* IN: File access property list identifier
@@ -8502,15 +8805,15 @@ public class H5 implements java.io.Serializable {
* IN: The number of read attempts which is a value greater than 0.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native void H5Pset_metadata_read_attempts(long plist_id, long attempts)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
- * H5Pget_evict_on_close retrieves the file access property list setting that determines whether an HDF5 object
- * will be evicted from the library's metadata cache when it is closed.
+ * H5Pget_evict_on_close retrieves the file access property list setting that determines whether an HDF5
+ * object will be evicted from the library's metadata cache when it is closed.
*
* @param fapl_id
* IN: File access property list identifier
@@ -8518,14 +8821,14 @@ public class H5 implements java.io.Serializable {
* @return indication if the object will be evicted on close.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native boolean H5Pget_evict_on_close(long fapl_id)
- throws HDF5LibraryException;
+ public synchronized static native boolean H5Pget_evict_on_close(long fapl_id) throws HDF5LibraryException;
/**
- * H5Pset_evict_on_close controls the library's behavior of evicting metadata associated with a closed object.
+ * H5Pset_evict_on_close controls the library's behavior of evicting metadata associated with a closed
+ * object.
*
* @param fapl_id
* IN: File access property list identifier
@@ -8533,11 +8836,11 @@ public class H5 implements java.io.Serializable {
* IN: Whether the HDF5 object should be evicted on close.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native void H5Pset_evict_on_close(long fapl_id, boolean evict_on_close)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
* H5Pget_use_file_locking retrieves whether we are using file locking.
@@ -8548,11 +8851,11 @@ public class H5 implements java.io.Serializable {
* @return indication if file locking is used.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native boolean H5Pget_use_file_locking(long fapl_id)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
* H5Pget_use_file_locking retrieves whether we ignore file locks when they are disabled.
@@ -8563,11 +8866,11 @@ public class H5 implements java.io.Serializable {
* @return indication if file locking is ignored.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native boolean H5Pget_ignore_disabled_file_locking(long fapl_id)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
* H5Pset_file_locking sets parameters related to file locking.
@@ -8576,17 +8879,19 @@ public class H5 implements java.io.Serializable {
* IN: File access property list identifier
*
* @param use_file_locking
- * IN: Whether the library will use file locking when opening files (mainly for SWMR semantics).
+ * IN: Whether the library will use file locking when opening files (mainly for SWMR
+ *semantics).
*
* @param ignore_when_disabled
* IN: Whether file locking will be ignored when disabled on a file system (useful for Lustre).
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native void H5Pset_file_locking(long fapl_id, boolean use_file_locking, boolean ignore_when_disabled)
- throws HDF5LibraryException;
+ public synchronized static native void H5Pset_file_locking(long fapl_id, boolean use_file_locking,
+ boolean ignore_when_disabled)
+ throws HDF5LibraryException;
// ///// unimplemented /////
// herr_t H5Pset_vol(hid_t plist_id, hid_t new_vol_id, const void *new_vol_info);
@@ -8601,11 +8906,11 @@ public class H5 implements java.io.Serializable {
* @param plist
* IN: Identifier for property list to query.
*
- * @return the layout type of a dataset creation property list if successful. Otherwise returns H5D_LAYOUT_ERROR
- * (-1).
+ * @return the layout type of a dataset creation property list if successful. Otherwise returns
+ * H5D_LAYOUT_ERROR (-1).
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pget_layout(long plist) throws HDF5LibraryException;
@@ -8620,7 +8925,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pset_layout(long plist, int layout) throws HDF5LibraryException;
@@ -8637,14 +8942,14 @@ public class H5 implements java.io.Serializable {
* @return chunk dimensionality successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - dims array is null.
+ * dims array is null.
* @exception IllegalArgumentException
- * - max_ndims &lt;=0
+ * max_ndims &lt;=0
**/
public synchronized static native int H5Pget_chunk(long plist, int max_ndims, long[] dims)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Pset_chunk sets the size of the chunks used to store a chunked layout dataset.
@@ -8659,14 +8964,14 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - dims array is null.
+ * dims array is null.
* @exception IllegalArgumentException
- * - dims &lt;=0
+ * dims &lt;=0
**/
- public synchronized static native int H5Pset_chunk(long plist, int ndims, byte[] dim) throws HDF5LibraryException,
- NullPointerException, IllegalArgumentException;
+ public synchronized static native int H5Pset_chunk(long plist, int ndims, byte[] dim)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Pset_chunk sets the size of the chunks used to store a chunked layout dataset.
@@ -8681,24 +8986,25 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5Exception
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - dims array is null.
+ * dims array is null.
* @exception IllegalArgumentException
- * - dims &lt;=0
+ * dims &lt;=0
**/
- public synchronized static int H5Pset_chunk(long plist, int ndims, long[] dim) throws HDF5Exception,
- NullPointerException, IllegalArgumentException {
+ public synchronized static int H5Pset_chunk(long plist, int ndims, long[] dim)
+ throws HDF5Exception, NullPointerException, IllegalArgumentException
+ {
if (dim == null) {
return -1;
}
HDFArray theArray = new HDFArray(dim);
- byte[] thedims = theArray.byteify();
+ byte[] thedims = theArray.byteify();
int retVal = H5Pset_chunk(plist, ndims, thedims);
- thedims = null;
+ thedims = null;
theArray = null;
return retVal;
}
@@ -8711,28 +9017,35 @@ public class H5 implements java.io.Serializable {
* and the name of the dataset, src_dset_name.
*
* @param dcpl_id
- * IN: The identifier of the dataset creation property list that will be used when creating the virtual dataset.
+ * IN: The identifier of the dataset creation property list that will be used when creating the
+ * virtual dataset.
* @param vspace_id
- * IN: The dataspace identifier with the selection within the virtual dataset applied, possibly an unlimited selection.
+ * IN: The dataspace identifier with the selection within the virtual dataset applied, possibly
+ * an unlimited selection.
* @param src_file_name
- * IN: The name of the HDF5 file where the source dataset is located. The file might not exist yet. The name can be specified using a C-style printf statement.
+ * IN: The name of the HDF5 file where the source dataset is located. The file might not exist
+ * yet. The name can be specified using a C-style printf statement.
* @param src_dset_name
- * IN: The path to the HDF5 dataset in the file specified by src_file_name. The dataset might not exist yet. The dataset name can be specified using a C-style printf statement.
+ * IN: The path to the HDF5 dataset in the file specified by src_file_name. The dataset might
+ * not exist yet. The dataset name can be specified using a C-style printf statement.
* @param src_space_id
- * IN: The source dataset dataspace identifier with a selection applied, possibly an unlimited selection.
+ * IN: The source dataset dataspace identifier with a selection applied, possibly an unlimited
+ * selection.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an name string is null.
+ * an name string is null.
* @exception IllegalArgumentException
- * - An id is &lt;=0
+ * an id is &lt;=0
**/
- public synchronized static native void H5Pset_virtual(long dcpl_id, long vspace_id, String src_file_name, String src_dset_name, long src_space_id) throws HDF5LibraryException,
- NullPointerException, IllegalArgumentException;
+ public synchronized static native void H5Pset_virtual(long dcpl_id, long vspace_id, String src_file_name,
+ String src_dset_name, long src_space_id)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
- * H5Pget_virtual_count gets the number of mappings for a virtual dataset that has the creation property list specified by dcpl_id.
+ * H5Pget_virtual_count gets the number of mappings for a virtual dataset that has the creation property
+ * list specified by dcpl_id.
*
* @param dcpl_id
* IN: The identifier of the virtual dataset creation property list.
@@ -8740,15 +9053,17 @@ public class H5 implements java.io.Serializable {
* @return a non-negative number of mappings if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - An id is &lt;=0
+ * An id is &lt;=0
**/
- public synchronized static native long H5Pget_virtual_count(long dcpl_id) throws HDF5LibraryException, IllegalArgumentException;
+ public synchronized static native long H5Pget_virtual_count(long dcpl_id)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
- * H5Pget_virtual_vspace takes the dataset creation property list for the virtual dataset, dcpl_id, and the mapping index, index,
- * and returns a dataspace identifier for the selection within the virtual dataset used in the mapping.
+ * H5Pget_virtual_vspace takes the dataset creation property list for the virtual dataset, dcpl_id, and
+ * the mapping index, index, and returns a dataspace identifier for the selection within the virtual
+ * dataset used in the mapping.
*
* @param dcpl_id
* IN: The identifier of the virtual dataset creation property list.
@@ -8758,15 +9073,17 @@ public class H5 implements java.io.Serializable {
* @return a valid dataspace identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - An id is &lt;=0
+ * An id is &lt;=0
**/
- public synchronized static native long H5Pget_virtual_vspace(long dcpl_id, long index) throws HDF5LibraryException, IllegalArgumentException;
+ public synchronized static native long H5Pget_virtual_vspace(long dcpl_id, long index)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
- * H5Pget_virtual_srcspace takes the dataset creation property list for the virtual dataset, dcpl_id, and the mapping index, index,
- * and returns a dataspace identifier for the selection within the source dataset used in the mapping.
+ * H5Pget_virtual_srcspace takes the dataset creation property list for the virtual dataset, dcpl_id, and
+ * the mapping index, index, and returns a dataspace identifier for the selection within the source
+ * dataset used in the mapping.
*
* @param dcpl_id
* IN: The identifier of the virtual dataset creation property list.
@@ -8776,15 +9093,17 @@ public class H5 implements java.io.Serializable {
* @return a valid dataspace identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - An id is &lt;=0
+ * An id is &lt;=0
**/
- public synchronized static native long H5Pget_virtual_srcspace(long dcpl_id, long index) throws HDF5LibraryException, IllegalArgumentException;
+ public synchronized static native long H5Pget_virtual_srcspace(long dcpl_id, long index)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
- * H5Pget_virtual_filename takes the dataset creation property list for the virtual dataset, dcpl_id, the mapping index, index,
- * the size of the filename for a source dataset, size, and retrieves the name of the file for a source dataset used in the mapping.
+ * H5Pget_virtual_filename takes the dataset creation property list for the virtual dataset, dcpl_id, the
+ * mapping index, index, the size of the filename for a source dataset, size, and retrieves the name of
+ * the file for a source dataset used in the mapping.
*
* @param dcpl_id
* IN: The identifier of the virtual dataset creation property list.
@@ -8794,15 +9113,17 @@ public class H5 implements java.io.Serializable {
* @return the name of the file containing the source dataset if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - An id is &lt;=0
+ * An id is &lt;=0
**/
- public synchronized static native String H5Pget_virtual_filename(long dcpl_id, long index) throws HDF5LibraryException, IllegalArgumentException;
+ public synchronized static native String H5Pget_virtual_filename(long dcpl_id, long index)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
- * H5Pget_virtual_dsetname takes the dataset creation property list for the virtual dataset, dcpl_id, the mapping index, index, the
- * size of the dataset name for a source dataset, size, and retrieves the name of the source dataset used in the mapping.
+ * H5Pget_virtual_dsetname takes the dataset creation property list for the virtual dataset, dcpl_id, the
+ * mapping index, index, the size of the dataset name for a source dataset, size, and retrieves the name
+ * of the source dataset used in the mapping.
*
* @param dcpl_id
* IN: The identifier of the virtual dataset creation property list.
@@ -8812,41 +9133,44 @@ public class H5 implements java.io.Serializable {
* @return the name of the source dataset if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - An id is &lt;=0
- **/
- public synchronized static native String H5Pget_virtual_dsetname(long dcpl_id, long index) throws HDF5LibraryException, IllegalArgumentException;
-
-// ///// unimplemented /////
-// /**
-// * H5Pget_vds_file_cache_size retrieves the size of the vds link open file cache.
-// *
-// * @param fapl_id
-// * IN: File access property list identifier
-// *
-// * @return VDS link open file cache size in number of files.
-// *
-// * @exception HDF5LibraryException
-// * - Error from the HDF-5 Library.
-// *
-// **/
-// public synchronized static native int H5Pget_vds_file_cache_size(long fapl_id) throws HDF5LibraryException;
-//
-// /**
-// * H5Pset_vds_file_cache_size sets the number of files that can be held open in an vds link open file cache.
-// *
-// * @param fapl_id
-// * IN: File access property list identifier
-// * @param efc_size
-// * IN: VDS link open file cache size in number of files.
-// *
-// * @exception HDF5LibraryException
-// * - Error from the HDF-5 Library.
-// *
-// **/
-// public synchronized static native void H5Pset_vds_file_cache_size(long fapl_id, int efc_size)
-// throws HDF5LibraryException;
+ * An id is &lt;=0
+ **/
+ public synchronized static native String H5Pget_virtual_dsetname(long dcpl_id, long index)
+ throws HDF5LibraryException, IllegalArgumentException;
+
+ // ///// unimplemented /////
+ // /**
+ // * H5Pget_vds_file_cache_size retrieves the size of the vds link open file cache.
+ // *
+ // * @param fapl_id
+ // * IN: File access property list identifier
+ // *
+ // * @return VDS link open file cache size in number of files.
+ // *
+ // * @exception HDF5LibraryException
+ // * Error from the HDF-5 Library.
+ // *
+ // **/
+ // public synchronized static native int H5Pget_vds_file_cache_size(long fapl_id) throws
+ // HDF5LibraryException;
+ //
+ // /**
+ // * H5Pset_vds_file_cache_size sets the number of files that can be held open in an vds link open
+ // * file cache.
+ // *
+ // * @param fapl_id
+ // * IN: File access property list identifier
+ // * @param efc_size
+ // * IN: VDS link open file cache size in number of files.
+ // *
+ // * @exception HDF5LibraryException
+ // * Error from the HDF-5 Library.
+ // *
+ // **/
+ // public synchronized static native void H5Pset_vds_file_cache_size(long fapl_id, int efc_size)
+ // throws HDF5LibraryException;
/**
* H5Pget_external returns information about an external file.
@@ -8871,20 +9195,21 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception ArrayIndexOutOfBoundsException
- * Fatal error on Copyback
+ * Fatal error on Copyback
* @exception ArrayStoreException
- * Fatal error on Copyback
+ * Fatal error on Copyback
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name or size is null.
+ * name or size is null.
* @exception IllegalArgumentException
- * - name_size &lt;= 0 .
+ * name_size &lt;= 0 .
*
**/
public synchronized static native int H5Pget_external(long plist, int idx, long name_size, String[] name,
- long[] size) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException,
- NullPointerException, IllegalArgumentException;
+ long[] size)
+ throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException,
+ NullPointerException, IllegalArgumentException;
/**
* H5Pset_external adds an external file to the list of external files.
@@ -8894,20 +9219,20 @@ public class H5 implements java.io.Serializable {
* @param name
* IN: Name of an external file.
* @param offset
- * IN: Offset, in bytes, from the beginning of the file to the location in the file where the data
- * starts.
+ * IN: Offset, in bytes, from the beginning of the file to the location in the file where the
+ * data starts.
* @param size
* IN: Number of bytes reserved in the file for the data.
*
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native int H5Pset_external(long plist, String name, long offset, long size)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pget_external_count returns the number of external files for the specified dataset.
@@ -8918,7 +9243,7 @@ public class H5 implements java.io.Serializable {
* @return the number of external files if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pget_external_count(long plist) throws HDF5LibraryException;
@@ -8935,11 +9260,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pset_szip(long plist, int options_mask, int pixels_per_block)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_shuffle Sets up the use of the shuffle filter.
@@ -8950,11 +9275,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pset_shuffle(long plist_id) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Pset_shuffle(long plist_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_nbit Sets up the use of the N-Bit filter.
@@ -8965,7 +9290,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pset_nbit(long plist_id) throws HDF5LibraryException;
@@ -8983,13 +9308,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Invalid arguments
+ * Invalid arguments
*
**/
public synchronized static native int H5Pset_scaleoffset(long plist_id, int scale_type, int scale_factor)
- throws HDF5LibraryException, IllegalArgumentException;
+ throws HDF5LibraryException, IllegalArgumentException;
/**
* H5Pget_fill_value queries the fill value property of a dataset creation property list.
@@ -9004,10 +9329,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5Exception
- * - Error converting data array.
+ * Error converting data array.
**/
public synchronized static native int H5Pget_fill_value(long plist_id, long type_id, byte[] value)
- throws HDF5Exception;
+ throws HDF5Exception;
/**
* H5Pget_fill_value queries the fill value property of a dataset creation property list.
@@ -9022,11 +9347,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5Exception
- * - Error converting data array.
+ * Error converting data array.
**/
- public synchronized static int H5Pget_fill_value(long plist_id, long type_id, Object obj) throws HDF5Exception {
+ public synchronized static int H5Pget_fill_value(long plist_id, long type_id, Object obj)
+ throws HDF5Exception
+ {
HDFArray theArray = new HDFArray(obj);
- byte[] buf = theArray.emptyBytes();
+ byte[] buf = theArray.emptyBytes();
int status = H5Pget_fill_value(plist_id, type_id, buf);
if (status >= 0) {
@@ -9049,10 +9376,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5Exception
- * - Error converting data array
+ * Error converting data array
**/
public synchronized static native int H5Pset_fill_value(long plist_id, long type_id, byte[] value)
- throws HDF5Exception;
+ throws HDF5Exception;
/**
* H5Pset_fill_value sets the fill value for a dataset creation property list.
@@ -9067,15 +9394,17 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5Exception
- * - Error converting data array
+ * Error converting data array
**/
- public synchronized static int H5Pset_fill_value(long plist_id, long type_id, Object obj) throws HDF5Exception {
+ public synchronized static int H5Pset_fill_value(long plist_id, long type_id, Object obj)
+ throws HDF5Exception
+ {
HDFArray theArray = new HDFArray(obj);
- byte[] buf = theArray.byteify();
+ byte[] buf = theArray.byteify();
int retVal = H5Pset_fill_value(plist_id, type_id, buf);
- buf = null;
+ buf = null;
theArray = null;
return retVal;
}
@@ -9095,10 +9424,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5Exception
- * - Error converting data array
+ * Error converting data array
**/
public synchronized static native int H5Pfill_value_defined(long plist_id, int[] status)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_alloc_time Gets space allocation time for dataset during creation.
@@ -9111,11 +9440,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pget_alloc_time(long plist_id, int[] alloc_time)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_alloc_time Sets space allocation time for dataset during creation.
@@ -9128,11 +9457,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pset_alloc_time(long plist_id, int alloc_time) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Pset_alloc_time(long plist_id, int alloc_time)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_fill_time Gets fill value writing time.
@@ -9145,10 +9474,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pget_fill_time(long plist_id, int[] fill_time) throws HDF5LibraryException;
+ public synchronized static native int H5Pget_fill_time(long plist_id, int[] fill_time)
+ throws HDF5LibraryException;
/**
* H5Pset_fill_time Sets the fill value writing time.
@@ -9161,10 +9491,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time) throws HDF5LibraryException;
+ public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time)
+ throws HDF5LibraryException;
/**
* H5Pset_chunk_opts Sets the edge chunk option in a dataset creation property list.
@@ -9177,12 +9508,13 @@ public class H5 implements java.io.Serializable {
* 0 - Disables option; partial edge chunks will be compressed.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library
+ * Error from the HDF-5 Library
**/
- public synchronized static native void H5Pset_chunk_opts(long dcpl_id, int opts) throws HDF5LibraryException;
+ public synchronized static native void H5Pset_chunk_opts(long dcpl_id, int opts)
+ throws HDF5LibraryException;
/**
- * H5Pget_chunk_opts retrieves the edge chunk option setting stored in the dataset creation property list .
+ * H5Pget_chunk_opts retrieves the edge chunk option setting stored in the dataset creation property list
*
* @param dcpl_id
* IN: Dataset creation property list
@@ -9190,13 +9522,14 @@ public class H5 implements java.io.Serializable {
* @return The edge chunk option setting.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library
- **/
+ * Error from the HDF-5 Library
+ *
+ */
public synchronized static native int H5Pget_chunk_opts(long dcpl_id) throws HDF5LibraryException;
/**
* H5Pget_dset_no_attrs_hint accesses the flag for whether or not datasets created by the given dcpl
- * will be created with a "minimized" object header.
+ * will be created with a "minimized" object header.
*
* @param dcpl_id
* IN: Dataset creation property list
@@ -9204,33 +9537,32 @@ public class H5 implements java.io.Serializable {
* @return true if the given dcpl is set to create minimized dataset object headers, false if not.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native boolean H5Pget_dset_no_attrs_hint(long dcpl_id)
- throws HDF5LibraryException;
-
+ throws HDF5LibraryException;
/**
* H5Pset_dset_no_attrs_hint sets the dcpl to minimize (or explicitly to not minimized) dataset object
- * headers upon creation.
+ * headers upon creation.
*
* @param dcpl_id
* IN: Dataset creation property list
*
* @param minimize
- * the minimize hint setting
+ * IN: the minimize hint setting
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Pset_dset_no_attrs_hint(long dcpl_id, boolean minimize)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
// /////// Dataset access property list (DAPL) routines ///////
/**
- * Retrieves the maximum possible number of elements in the meta data cache and the maximum possible number of bytes
- * and the RDCC_W0 value in the raw data chunk cache on a per-datset basis.
+ * Retrieves the maximum possible number of elements in the meta data cache and the maximum possible
+ * number of bytes and the RDCC_W0 value in the raw data chunk cache on a per-datset basis.
*
* @param dapl_id
* IN: Identifier of the dataset access property list.
@@ -9242,16 +9574,17 @@ public class H5 implements java.io.Serializable {
* IN/OUT: Preemption policy.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an array is null.
+ * an array is null.
**/
- public synchronized static native void H5Pget_chunk_cache(long dapl_id, long[] rdcc_nslots, long[] rdcc_nbytes,
- double[] rdcc_w0) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Pget_chunk_cache(long dapl_id, long[] rdcc_nslots,
+ long[] rdcc_nbytes, double[] rdcc_w0)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Pset_chunk_cache sets the number of elements (objects) in the meta data cache and the total number of bytes in
- * the raw data chunk cache on a per-datset basis.
+ * H5Pset_chunk_cache sets the number of elements (objects) in the meta data cache and the total number of
+ * bytes in the raw data chunk cache on a per-datset basis.
*
* @param dapl_id
* IN: Identifier of the dataset access property list.
@@ -9263,10 +9596,11 @@ public class H5 implements java.io.Serializable {
* IN: Preemption policy.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Pset_chunk_cache(long dapl_id, long rdcc_nslots, long rdcc_nbytes,
- double rdcc_w0) throws HDF5LibraryException;
+ public synchronized static native void H5Pset_chunk_cache(long dapl_id, long rdcc_nslots,
+ long rdcc_nbytes, double rdcc_w0)
+ throws HDF5LibraryException;
/**
* H5Pset_virtual_view takes the access property list for the virtual dataset, dapl_id, and the flag,
@@ -9278,9 +9612,10 @@ public class H5 implements java.io.Serializable {
* IN: Flag specifying the extent of the data to be included in the view.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library
+ * Error from the HDF-5 Library
**/
- public synchronized static native void H5Pset_virtual_view(long dapl_id, int view) throws HDF5LibraryException;
+ public synchronized static native void H5Pset_virtual_view(long dapl_id, int view)
+ throws HDF5LibraryException;
/**
* H5Pget_virtual_view takes the virtual dataset access property list, dapl_id, and retrieves the flag,
@@ -9292,26 +9627,28 @@ public class H5 implements java.io.Serializable {
* @return The flag specifying the view of the virtual dataset.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library
- **/
+ * Error from the HDF-5 Library
+ *
+ */
public synchronized static native int H5Pget_virtual_view(long dapl_id) throws HDF5LibraryException;
/**
- * H5Pset_virtual_printf_gap sets the access property list for the virtual dataset, dapl_id, to instruct the
- * library to stop looking for the mapped data stored in the files and/or datasets with the printf-style names
- * after not finding gap_size files and/or datasets. The found source files and datasets will determine the
- * extent of the unlimited virtual dataset with the printf-style mappings.
+ * H5Pset_virtual_printf_gap sets the access property list for the virtual dataset, dapl_id, to instruct
+ * the library to stop looking for the mapped data stored in the files and/or datasets with the
+ * printf-style names after not finding gap_size files and/or datasets. The found source files and
+ * datasets will determine the extent of the unlimited virtual dataset with the printf-style mappings.
*
* @param dapl_id
* IN: Dataset access property list identifier for the virtual dataset
* @param gap_size
* IN: Maximum number of files and/or datasets allowed to be missing for determining
- * the extent of an unlimited virtual dataset with printf-style mappings.
+ * the extent of an unlimited virtual dataset with printf-style mappings.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library
+ * Error from the HDF-5 Library
**/
- public synchronized static native void H5Pset_virtual_printf_gap(long dapl_id, long gap_size) throws HDF5LibraryException;
+ public synchronized static native void H5Pset_virtual_printf_gap(long dapl_id, long gap_size)
+ throws HDF5LibraryException;
/**
* H5Pget_virtual_printf_gap returns the maximum number of missing printf-style files and/or datasets for
@@ -9325,9 +9662,11 @@ public class H5 implements java.io.Serializable {
* the extent of an unlimited virtual dataset with printf-style mappings.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library
- **/
- public synchronized static native long H5Pget_virtual_printf_gap(long dapl_id) throws HDF5LibraryException;
+ * Error from the HDF-5 Library
+ *
+ */
+ public synchronized static native long H5Pget_virtual_printf_gap(long dapl_id)
+ throws HDF5LibraryException;
/**
* H5Pget_virtual_prefix Retrieves prefix applied to virtual file paths.
@@ -9338,11 +9677,10 @@ public class H5 implements java.io.Serializable {
* @return the prefix to be applied to virtual file paths.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native String H5Pget_virtual_prefix(long dapl_id)
- throws HDF5LibraryException;
+ public synchronized static native String H5Pget_virtual_prefix(long dapl_id) throws HDF5LibraryException;
/**
* H5Pset_virtual_prefix Sets prefix to be applied to virtual file paths.
@@ -9353,13 +9691,13 @@ public class H5 implements java.io.Serializable {
* IN: Prefix to be applied to virtual file paths
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - prefix is null.
+ * prefix is null.
*
**/
public synchronized static native void H5Pset_virtual_prefix(long dapl_id, String prefix)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pget_efile_prefix Retrieves prefix applied to external file paths.
@@ -9370,11 +9708,10 @@ public class H5 implements java.io.Serializable {
* @return the prefix to be applied to external file paths.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native String H5Pget_efile_prefix(long dapl_id)
- throws HDF5LibraryException;
+ public synchronized static native String H5Pget_efile_prefix(long dapl_id) throws HDF5LibraryException;
/**
* H5Pset_efile_prefix Sets prefix to be applied to external file paths.
@@ -9385,24 +9722,25 @@ public class H5 implements java.io.Serializable {
* IN: Prefix to be applied to external file paths
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - prefix is null.
+ * prefix is null.
*
**/
public synchronized static native void H5Pset_efile_prefix(long dapl_id, String prefix)
- throws HDF5LibraryException, NullPointerException;
-
- // public synchronized static native void H5Pset_append_flush(long plist_id, int ndims, long[] boundary, H5D_append_cb func, H5D_append_t udata) throws HDF5LibraryException;
+ throws HDF5LibraryException, NullPointerException;
- // public synchronized static native void H5Pget_append_flush(long plist_id, int dims, long[] boundary, H5D_append_cb func, H5D_append_t udata) throws HDF5LibraryException;
+ // public synchronized static native void H5Pset_append_flush(long plist_id, int ndims, long[] boundary,
+ // H5D_append_cb func, H5D_append_t udata) throws HDF5LibraryException;
+ // public synchronized static native void H5Pget_append_flush(long plist_id, int dims, long[] boundary,
+ // H5D_append_cb func, H5D_append_t udata) throws HDF5LibraryException;
// /////// Dataset xfer property list (DXPL) routines ///////
/**
- * H5Pget_data_transform retrieves the data transform expression previously set in the dataset transfer property
- * list plist_id by H5Pset_data_transform.
+ * H5Pget_data_transform retrieves the data transform expression previously set in the dataset transfer
+ * property list plist_id by H5Pset_data_transform.
*
* @param plist_id
* IN: Identifier of the property list or class
@@ -9411,18 +9749,19 @@ public class H5 implements java.io.Serializable {
* @param expression
* OUT: A data transform expression
*
- * @return The size of the transform expression if successful; 0(zero) if no transform expression exists. Otherwise
- * returns a negative value.
+ * @return The size of the transform expression if successful; 0(zero) if no transform expression exists.
+ * Otherwise returns a negative value.
*
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Size is &lt;= 0.
+ * Size is &lt;= 0.
*
**/
- public synchronized static native long H5Pget_data_transform(long plist_id, String[] expression, long size)
- throws HDF5LibraryException, IllegalArgumentException;
+ public synchronized static native long H5Pget_data_transform(long plist_id, String[] expression,
+ long size)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
* H5Pset_data_transform sets a data transform expression
@@ -9435,17 +9774,17 @@ public class H5 implements java.io.Serializable {
* @return a non-negative valule if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - expression is null.
+ * expression is null.
*
**/
public synchronized static native int H5Pset_data_transform(long plist_id, String expression)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * HH5Pget_buffer gets type conversion and background buffers. Returns buffer size, in bytes, if successful;
- * otherwise 0 on failure.
+ * HH5Pget_buffer gets type conversion and background buffers. Returns buffer size, in bytes, if
+ * successful; otherwise 0 on failure.
*
* @param plist
* Identifier for the dataset transfer property list.
@@ -9457,12 +9796,12 @@ public class H5 implements java.io.Serializable {
* @return buffer size, in bytes, if successful; otherwise 0 on failure
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - plist is invalid.
+ * plist is invalid.
**/
public synchronized static native int H5Pget_buffer(long plist, byte[] tconv, byte[] bkg)
- throws HDF5LibraryException, IllegalArgumentException;
+ throws HDF5LibraryException, IllegalArgumentException;
/**
* H5Pget_buffer_size gets type conversion and background buffer size, in bytes, if successful;
@@ -9474,26 +9813,27 @@ public class H5 implements java.io.Serializable {
* @return buffer size, in bytes, if successful; otherwise 0 on failure
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - plist is invalid.
+ * plist is invalid.
**/
public synchronized static native long H5Pget_buffer_size(long plist)
- throws HDF5LibraryException, IllegalArgumentException;
+ throws HDF5LibraryException, IllegalArgumentException;
/**
* H5Pset_buffer sets type conversion and background buffers. status to TRUE or FALSE.
*
- * Given a dataset transfer property list, H5Pset_buffer sets the maximum size for the type conversion buffer and
- * background buffer and optionally supplies pointers to application-allocated buffers. If the buffer size is
- * smaller than the entire amount of data being transferred between the application and the file, and a type
- * conversion buffer or background buffer is required, then strip mining will be used.
+ * Given a dataset transfer property list, H5Pset_buffer sets the maximum size for the type conversion
+ * buffer and background buffer and optionally supplies pointers to application-allocated buffers. If the
+ * buffer size is smaller than the entire amount of data being transferred between the application and the
+ * file, and a type conversion buffer or background buffer is required, then strip mining will be used.
*
- * Note that there are minimum size requirements for the buffer. Strip mining can only break the data up along the
- * first dimension, so the buffer must be large enough to accommodate a complete slice that encompasses all of the
- * remaining dimensions. For example, when strip mining a 100x200x300 hyperslab of a simple data space, the buffer
- * must be large enough to hold 1x200x300 data elements. When strip mining a 100x200x300x150 hyperslab of a simple
- * data space, the buffer must be large enough to hold 1x200x300x150 data elements.
+ * Note that there are minimum size requirements for the buffer. Strip mining can only break the data up
+ * along the first dimension, so the buffer must be large enough to accommodate a complete slice that
+ * encompasses all of the remaining dimensions. For example, when strip mining a 100x200x300 hyperslab of
+ * a simple data space, the buffer must be large enough to hold 1x200x300 data elements. When strip mining
+ * a 100x200x300x150 hyperslab of a simple data space, the buffer must be large enough to hold
+ * 1x200x300x150 data elements.
*
* @param plist
* Identifier for the dataset transfer property list.
@@ -9501,12 +9841,12 @@ public class H5 implements java.io.Serializable {
* Size, in bytes, of the type conversion and background buffers.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - plist is invalid.
+ * plist is invalid.
**/
- public synchronized static native void H5Pset_buffer_size(long plist, long size) throws HDF5LibraryException,
- IllegalArgumentException;
+ public synchronized static native void H5Pset_buffer_size(long plist, long size)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
* H5Pget_edc_check gets the error-detecting algorithm in use.
@@ -9517,7 +9857,7 @@ public class H5 implements java.io.Serializable {
* @return the error-detecting algorithm
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pget_edc_check(long plist) throws HDF5LibraryException;
@@ -9532,7 +9872,7 @@ public class H5 implements java.io.Serializable {
* @return non-negative if succeed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Pset_edc_check(long plist, int check) throws HDF5LibraryException;
@@ -9551,16 +9891,17 @@ public class H5 implements java.io.Serializable {
* @return non-negative if succeed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
**/
public synchronized static native int H5Pget_btree_ratios(long plist_id, double[] left, double[] middle,
- double[] right) throws HDF5LibraryException, NullPointerException;
+ double[] right)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Pset_btree_ratio Sets B-tree split ratios for a dataset transfer property list. The split ratios determine what
- * percent of children go in the first node when a node splits.
+ * H5Pset_btree_ratio Sets B-tree split ratios for a dataset transfer property list. The split ratios
+ * determine what percent of children go in the first node when a node splits.
*
* @param plist_id
* IN Dataset transfer property list
@@ -9574,10 +9915,10 @@ public class H5 implements java.io.Serializable {
* @return non-negative if succeed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Pset_btree_ratios(long plist_id, double left, double middle, double right)
- throws HDF5LibraryException;
+ public synchronized static native int H5Pset_btree_ratios(long plist_id, double left, double middle,
+ double right) throws HDF5LibraryException;
/**
* H5Pget_hyper_vector_size reads values previously set with H5Pset_hyper_vector_size.
@@ -9590,11 +9931,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pget_hyper_vector_size(long dxpl_id, long[] vector_size)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_hyper_vector_size sets the number of
@@ -9604,7 +9945,7 @@ public class H5 implements java.io.Serializable {
* Increasing the number should give better performance, but use
* more memory during hyperslab I/O. The vector size must be
* greater than 1.
- *,p.
+ *<p>
* The default is to use 1024 vectors for I/O during hyperslab
* reading/writing.
*
@@ -9616,17 +9957,17 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pset_hyper_vector_size(long dxpl_id, long vector_size)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
// /////// Link creation property list (LCPL) routines ///////
/**
- * H5Pget_create_intermediate_group determines whether property is set to enable creating missing intermediate
- * groups.
+ * H5Pget_create_intermediate_group determines whether property is set to enable creating missing
+ * intermediate groups.
*
* @param lcpl_id
* IN: Link creation property list identifier
@@ -9634,14 +9975,15 @@ public class H5 implements java.io.Serializable {
* @return Boolean true or false
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native boolean H5Pget_create_intermediate_group(long lcpl_id)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
- * H5Pset_create_intermediate_group specifies in property list whether to create missing intermediate groups
+ * H5Pset_create_intermediate_group specifies in property list whether to create missing intermediate
+ * groups
*
* @param lcpl_id
* IN: Link creation property list identifier
@@ -9651,11 +9993,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative valule if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pset_create_intermediate_group(long lcpl_id, boolean crt_intermed_group)
- throws HDF5LibraryException;
+ public synchronized static native int H5Pset_create_intermediate_group(long lcpl_id,
+ boolean crt_intermed_group)
+ throws HDF5LibraryException;
// /////// Group creation property list (GCPL) routines ///////
@@ -9668,10 +10011,11 @@ public class H5 implements java.io.Serializable {
* @return size_hint, the anticipated size of local heap
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native long H5Pget_local_heap_size_hint(long gcpl_id) throws HDF5LibraryException;
+ public synchronized static native long H5Pget_local_heap_size_hint(long gcpl_id)
+ throws HDF5LibraryException;
/**
* H5Pset_local_heap_size_hint Specifies the anticipated maximum size of a local heap.
@@ -9684,11 +10028,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pset_local_heap_size_hint(long gcpl_id, long size_hint)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
* H5Pget_link_phase_change Queries the settings for conversion between compact and dense groups.
@@ -9696,7 +10040,8 @@ public class H5 implements java.io.Serializable {
* @param gcpl_id
* IN: Group creation property list identifier
* @param links
- * The max. no. of compact links &amp; the min. no. of dense links, which are used for storing groups
+ * The max. no. of compact links &amp; the min. no. of dense links, which are used for storing
+ * groups
*
* <pre>
* links[0] = The maximum number of links for compact storage
@@ -9706,13 +10051,13 @@ public class H5 implements java.io.Serializable {
* @return Returns a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - size is null.
+ * size is null.
*
**/
public synchronized static native int H5Pget_link_phase_change(long gcpl_id, int[] links)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_link_phase_change Sets the parameters for conversion between compact and dense groups.
@@ -9727,13 +10072,14 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Invalid values of max_compact and min_dense.
+ * Invalid values of max_compact and min_dense.
*
**/
- public synchronized static native int H5Pset_link_phase_change(long gcpl_id, int max_compact, int min_dense)
- throws HDF5LibraryException, IllegalArgumentException;
+ public synchronized static native int H5Pset_link_phase_change(long gcpl_id, int max_compact,
+ int min_dense)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
* H5Pget_est_link_info Queries data required to estimate required local heap or object header size.
@@ -9741,7 +10087,8 @@ public class H5 implements java.io.Serializable {
* @param gcpl_id
* IN: Group creation property list identifier
* @param link_info
- * Estimated number of links to be inserted into group And the estimated average length of link names
+ * Estimated number of links to be inserted into group And the estimated average length of link
+ * names
*
* <pre>
* link_info[0] = Estimated number of links to be inserted into group
@@ -9751,13 +10098,13 @@ public class H5 implements java.io.Serializable {
* @return Returns a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - link_info is null.
+ * link_info is null.
*
**/
public synchronized static native int H5Pget_est_link_info(long gcpl_id, int[] link_info)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_est_link_info Sets estimated number of links and length of link names in a group.
@@ -9772,17 +10119,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Invalid values to est_num_entries and est_name_len.
+ * Invalid values to est_num_entries and est_name_len.
*
**/
- public synchronized static native int H5Pset_est_link_info(long gcpl_id, int est_num_entries, int est_name_len)
- throws HDF5LibraryException, IllegalArgumentException;
+ public synchronized static native int H5Pset_est_link_info(long gcpl_id, int est_num_entries,
+ int est_name_len)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
- * H5Pget_link_creation_order queries the group creation property list, gcpl_id, and returns a flag indicating
- * whether link creation order is tracked and/or indexed in a group.
+ * H5Pget_link_creation_order queries the group creation property list, gcpl_id, and returns a flag
+ * indicating whether link creation order is tracked and/or indexed in a group.
*
* @param gcpl_id
* IN: Group creation property list identifier
@@ -9790,14 +10138,15 @@ public class H5 implements java.io.Serializable {
* @return crt_order_flags -Creation order flag(s)
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pget_link_creation_order(long gcpl_id) throws HDF5LibraryException;
+ public synchronized static native int H5Pget_link_creation_order(long gcpl_id)
+ throws HDF5LibraryException;
/**
- * H5Pset_link_creation_order Sets flags in a group creation property list, gcpl_id, for tracking and/or indexing
- * links on creation order.
+ * H5Pset_link_creation_order Sets flags in a group creation property list, gcpl_id, for tracking and/or
+ * indexing links on creation order.
*
* @param gcpl_id
* IN: Group creation property list identifier
@@ -9808,11 +10157,11 @@ public class H5 implements java.io.Serializable {
* @return Returns a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pset_link_creation_order(long gcpl_id, int crt_order_flags)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
// /////// String creation property list (STRCPL) routines ///////
@@ -9825,7 +10174,7 @@ public class H5 implements java.io.Serializable {
* @return Returns the character encoding of the string.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pget_char_encoding(long plist_id) throws HDF5LibraryException;
@@ -9839,18 +10188,18 @@ public class H5 implements java.io.Serializable {
* IN: the character encoding of the string
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native void H5Pset_char_encoding(long plist_id, int encoding)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
// /////// Link access property list (LAPL) routines ///////
/**
- * H5Pget_nlinks retrieves the maximum number of soft or user-defined link traversals allowed, nlinks, before the
- * library assumes it has found a cycle and aborts the traversal. This value is retrieved from the link access
- * property list lapl_id.
+ * H5Pget_nlinks retrieves the maximum number of soft or user-defined link traversals allowed, nlinks,
+ * before the library assumes it has found a cycle and aborts the traversal. This value is retrieved from
+ * the link access property list lapl_id.
*
* @param lapl_id
* IN: File access property list identifier
@@ -9858,15 +10207,15 @@ public class H5 implements java.io.Serializable {
* @return Returns a Maximum number of links to traverse.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native long H5Pget_nlinks(long lapl_id) throws HDF5LibraryException;
/**
- * H5Pset_nlinks sets the maximum number of soft or user-defined link traversals allowed, nlinks, before the library
- * assumes it has found a cycle and aborts the traversal. This value is set in the link access property list
- * lapl_id.
+ * H5Pset_nlinks sets the maximum number of soft or user-defined link traversals allowed, nlinks, before
+ * the library assumes it has found a cycle and aborts the traversal. This value is set in the link access
+ * property list lapl_id.
*
* @param lapl_id
* IN: File access property list identifier
@@ -9876,13 +10225,13 @@ public class H5 implements java.io.Serializable {
* @return Returns a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Argument is Illegal
+ * Argument is Illegal
*
**/
- public synchronized static native int H5Pset_nlinks(long lapl_id, long nlinks) throws HDF5LibraryException,
- IllegalArgumentException;
+ public synchronized static native int H5Pset_nlinks(long lapl_id, long nlinks)
+ throws HDF5LibraryException, IllegalArgumentException;
/**
* H5Pget_elink_prefix Retrieves prefix applied to external link paths.
@@ -9892,17 +10241,17 @@ public class H5 implements java.io.Serializable {
* @param prefix
* OUT: Prefix applied to external link paths
*
- * @return If successful, returns a non-negative value specifying the size in bytes of the prefix without the NULL
- * terminator; otherwise returns a negative value.
+ * @return If successful, returns a non-negative value specifying the size in bytes of the prefix without
+ * the NULL terminator; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - prefix is null.
+ * prefix is null.
*
**/
public synchronized static native long H5Pget_elink_prefix(long lapl_id, String[] prefix)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_elink_prefix Sets prefix to be applied to external link paths.
@@ -9915,17 +10264,17 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - prefix is null.
+ * prefix is null.
*
**/
- public synchronized static native int H5Pset_elink_prefix(long lapl_id, String prefix) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Pset_elink_prefix(long lapl_id, String prefix)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Pget_elink_fapl Retrieves the file access property list identifier associated with the link access property
- * list.
+ * H5Pget_elink_fapl Retrieves the file access property list identifier associated with the link access
+ * property list.
*
* @param lapl_id
* IN: Link access property list identifier
@@ -9933,10 +10282,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public static long H5Pget_elink_fapl(long lapl_id) throws HDF5LibraryException {
+ public static long H5Pget_elink_fapl(long lapl_id) throws HDF5LibraryException
+ {
long id = _H5Pget_elink_fapl(lapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Pget_elink_fapl add {}", id);
@@ -9949,7 +10299,8 @@ public class H5 implements java.io.Serializable {
private synchronized static native long _H5Pget_elink_fapl(long lapl_id) throws HDF5LibraryException;
/**
- * H5Pset_elink_fapl sets a file access property list for use in accessing a file pointed to by an external link.
+ * H5Pset_elink_fapl sets a file access property list for use in accessing a file pointed to by an
+ * external link.
*
* @param lapl_id
* IN: Link access property list identifier
@@ -9959,14 +10310,15 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pset_elink_fapl(long lapl_id, long fapl_id) throws HDF5LibraryException;
+ public synchronized static native int H5Pset_elink_fapl(long lapl_id, long fapl_id)
+ throws HDF5LibraryException;
/**
- * H5Pget_elink_acc_flags retrieves the external link traversal file access flag from the specified link access
- * property list.
+ * H5Pget_elink_acc_flags retrieves the external link traversal file access flag from the specified link
+ * access property list.
*
* @param lapl_id
* IN: Link access property list identifier
@@ -9974,13 +10326,14 @@ public class H5 implements java.io.Serializable {
* @return File access flag for link traversal.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pget_elink_acc_flags(long lapl_id) throws HDF5LibraryException;
/**
- * H5Pset_elink_acc_flags Sets the external link traversal file access flag in a link access property list.
+ * H5Pset_elink_acc_flags Sets the external link traversal file access flag in a link access property
+ * list.
*
* @param lapl_id
* IN: Link access property list identifier
@@ -9990,13 +10343,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception IllegalArgumentException
- * - Invalid Flag values.
+ * Invalid Flag values.
*
**/
- public synchronized static native int H5Pset_elink_acc_flags(long lapl_id, int flags) throws HDF5LibraryException,
- IllegalArgumentException;
+ public synchronized static native int H5Pset_elink_acc_flags(long lapl_id, int flags)
+ throws HDF5LibraryException, IllegalArgumentException;
// /////// Object copy property list (OCPYPL) routines ///////
@@ -10009,7 +10362,7 @@ public class H5 implements java.io.Serializable {
* @return Copy option(s) set in the object copy property list
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pget_copy_object(long ocp_plist_id) throws HDF5LibraryException;
@@ -10023,11 +10376,11 @@ public class H5 implements java.io.Serializable {
* IN: Copy option(s) to be set
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native void H5Pset_copy_object(long ocp_plist_id, int copy_options)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
// /////// file drivers property list routines ///////
@@ -10042,11 +10395,12 @@ public class H5 implements java.io.Serializable {
* OUT: write to file name on flush setting
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native void H5Pget_fapl_core(long fapl_id, long[] increment, boolean[] backing_store)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Pget_fapl_core(long fapl_id, long[] increment,
+ boolean[] backing_store)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_fapl_core modifies the file access property list to use the H5FD_CORE driver.
@@ -10061,11 +10415,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pset_fapl_core(long fapl_id, long increment, boolean backing_store)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Pset_fapl_core(long fapl_id, long increment,
+ boolean backing_store)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pget_fapl_direct queries properties set by the H5Pset_fapl_direct.
@@ -10080,10 +10435,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pget_fapl_direct(long fapl_id, long[] info) throws HDF5LibraryException;
+ public synchronized static native int H5Pget_fapl_direct(long fapl_id, long[] info)
+ throws HDF5LibraryException;
/**
* H5Pset_fapl_direct Sets up use of the direct I/O driver.
@@ -10100,11 +10456,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pset_fapl_direct(long fapl_id, long alignment, long block_size,
- long cbuf_size) throws HDF5LibraryException;
+ long cbuf_size) throws HDF5LibraryException;
/**
* H5Pget_fapl_family Returns information about the family file access property list.
@@ -10119,11 +10475,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pget_fapl_family(long fapl_id, long[] memb_size, long[] memb_fapl_id)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Pget_fapl_family(long fapl_id, long[] memb_size,
+ long[] memb_fapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_fapl_family Sets up use of the direct I/O driver.
@@ -10138,11 +10495,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
public synchronized static native int H5Pset_fapl_family(long fapl_id, long memb_size, long memb_fapl_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_fapl_hdfs Modify the file access property list to use the H5FD_HDFS driver.
@@ -10155,10 +10512,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pset_fapl_hdfs(long fapl_id, H5FD_hdfs_fapl_t fapl_conf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Pset_fapl_hdfs(long fapl_id, H5FD_hdfs_fapl_t fapl_conf)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pget_fapl_hdfs gets the properties hdfs I/O driver.
@@ -10169,10 +10527,11 @@ public class H5 implements java.io.Serializable {
* @return the properties of the hdfs driver.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native H5FD_hdfs_fapl_t H5Pget_fapl_hdfs(long fapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native H5FD_hdfs_fapl_t H5Pget_fapl_hdfs(long fapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pget_fapl_multi Sets up use of the multi I/O driver.
@@ -10186,19 +10545,21 @@ public class H5 implements java.io.Serializable {
* @param memb_name
* IN: Name generator for names of member files.
* @param memb_addr
- * IN: The offsets within the virtual address space, from 0 (zero) to HADDR_MAX, at which each type of
- * data storage begins.
+ * IN: The offsets within the virtual address space, from 0 (zero) to HADDR_MAX, at which each
+ * type of data storage begins.
*
* @return a boolean value; Allows read-only access to incomplete file sets when TRUE.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an array is null.
+ * an array is null.
*
**/
- public synchronized static native boolean H5Pget_fapl_multi(long fapl_id, int[] memb_map, long[] memb_fapl,
- String[] memb_name, long[] memb_addr) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native boolean H5Pget_fapl_multi(long fapl_id, int[] memb_map,
+ long[] memb_fapl, String[] memb_name,
+ long[] memb_addr)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_fapl_multi Sets up use of the multi I/O driver.
@@ -10212,25 +10573,27 @@ public class H5 implements java.io.Serializable {
* @param memb_name
* IN: Name generator for names of member files.
* @param memb_addr
- * IN: The offsets within the virtual address space, from 0 (zero) to HADDR_MAX, at which each type of
- * data storage begins.
+ * IN: The offsets within the virtual address space, from 0 (zero) to HADDR_MAX, at which each
+ * type of data storage begins.
* @param relax
* IN: Allows read-only access to incomplete file sets when TRUE.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an array is null.
+ * an array is null.
*
**/
public synchronized static native void H5Pset_fapl_multi(long fapl_id, int[] memb_map, long[] memb_fapl,
- String[] memb_name, long[] memb_addr, boolean relax) throws HDF5LibraryException, NullPointerException;
-
+ String[] memb_name, long[] memb_addr,
+ boolean relax)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Pset_fapl_log Sets up the logging virtual file driver (H5FD_LOG) for use. H5Pset_fapl_log modifies the file
- * access property list to use the logging driver, H5FD_LOG. The logging virtual file driver (VFD) is a clone of the
- * standard SEC2 (H5FD_SEC2) driver with additional facilities for logging VFD metrics and activity to a file.
+ * H5Pset_fapl_log Sets up the logging virtual file driver (H5FD_LOG) for use. H5Pset_fapl_log modifies
+ * the file access property list to use the logging driver, H5FD_LOG. The logging virtual file driver
+ * (VFD) is a clone of the standard SEC2 (H5FD_SEC2) driver with additional facilities for logging VFD
+ * metrics and activity to a file.
*
* @param fapl_id
* IN: File access property list identifier.
@@ -10242,12 +10605,13 @@ public class H5 implements java.io.Serializable {
* IN: The size of the logging buffers, in bytes.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - logfile is null.
+ * logfile is null.
**/
- public synchronized static native void H5Pset_fapl_log(long fapl_id, String logfile, long flags, long buf_size)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Pset_fapl_log(long fapl_id, String logfile, long flags,
+ long buf_size)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_fapl_sec2 Sets up use of the sec2 I/O driver.
@@ -10258,10 +10622,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pset_fapl_sec2(long fapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Pset_fapl_sec2(long fapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_fapl_split Sets up use of the split I/O driver. Makes the multi driver act like the
@@ -10280,11 +10645,12 @@ public class H5 implements java.io.Serializable {
* IN: File access property list identifier raw data
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native void H5Pset_fapl_split(long fapl_id, String meta_ext, long meta_plist_id,
- String raw_ext, long raw_plist_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void
+ H5Pset_fapl_split(long fapl_id, String meta_ext, long meta_plist_id, String raw_ext, long raw_plist_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_fapl_stdio Sets up use of the stdio I/O driver.
@@ -10295,10 +10661,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pset_fapl_stdio(long fapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Pset_fapl_stdio(long fapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_fapl_windows Sets up use of the windows I/O driver.
@@ -10309,10 +10676,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pset_fapl_windows(long fapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Pset_fapl_windows(long fapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pset_fapl_ros3 Modify the file access property list to use the H5FD_ROS3 driver.
@@ -10325,10 +10693,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful; otherwise returns a negative value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native int H5Pset_fapl_ros3(long fapl_id, H5FD_ros3_fapl_t fapl_conf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Pset_fapl_ros3(long fapl_id, H5FD_ros3_fapl_t fapl_conf)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Pget_fapl_ros3 gets the properties of the ros3 I/O driver.
@@ -10339,10 +10708,11 @@ public class H5 implements java.io.Serializable {
* @return the properties of the ros3 driver.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
*
**/
- public synchronized static native H5FD_ros3_fapl_t H5Pget_fapl_ros3(long fapl_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native H5FD_ros3_fapl_t H5Pget_fapl_ros3(long fapl_id)
+ throws HDF5LibraryException, NullPointerException;
// /////// unimplemented ////////
@@ -10373,32 +10743,35 @@ public class H5 implements java.io.Serializable {
// #endif /* H5_HAVE_PARALLEL */
// herr_t H5Pset_mdc_image_config(hid_t plist_id, H5AC_cache_image_config_t *config_ptr);
// herr_t H5Pget_mdc_image_config(hid_t plist_id, H5AC_cache_image_config_t *config_ptr /*out*/);
- // herr_t H5Pset_page_buffer_size(hid_t plist_id, size_t buf_size, unsigned min_meta_per, unsigned min_raw_per);
- // herr_t H5Pget_page_buffer_size(hid_t fapl_id, size_t *buf_size, unsigned *min_meta_perc, unsigned *min_raw_perc);
- // herr_t H5Pset_object_flush_cb (hid_t fapl_id, H5F_flush_cb_t func, void *user_data);
+ // herr_t H5Pset_page_buffer_size(hid_t plist_id, size_t buf_size, unsigned min_meta_per, unsigned
+ // min_raw_per);
+ // herr_t H5Pget_page_buffer_size(hid_t fapl_id, size_t *buf_size, unsigned *min_meta_perc, unsigned
+ // *min_raw_perc); herr_t H5Pset_object_flush_cb (hid_t fapl_id, H5F_flush_cb_t func, void *user_data);
// herr_t H5Pget_object_flush_cb (hid_t fapl_id, H5F_flush_cb_t *func, void **user_data);
// Dataset creation property list (DCPL) routines //
// Dataset access property list (DAPL) routines //
- // herr_t H5Pset_append_flush (hid_t dapl_id, int ndims, const hsize_t boundary[], H5D_append_cb_t func, void *user_data);
- // herr_t H5Pget_append_flush(hid_t dapl_id, int ndims, hsize_t boundary[], H5D_append_cb_t *func, void **user_data)
+ // herr_t H5Pset_append_flush (hid_t dapl_id, int ndims, const hsize_t boundary[], H5D_append_cb_t func,
+ // void *user_data); herr_t H5Pget_append_flush(hid_t dapl_id, int ndims, hsize_t boundary[],
+ // H5D_append_cb_t *func, void **user_data)
// Dataset xfer property list (DXPL) routines //
// herr_t H5Pset_buffer(hid_t plist_id, size_t size, void *tconv, void *bkg);
// herr_t H5Pset_preserve(hid_t plist_id, hbool_t status);
// int H5Pget_preserve(hid_t plist_id);
// herr_t H5Pset_filter_callback(hid_t plist, H5Z_filter_func_t func, void *op_data)
- // herr_t H5Pget_vlen_mem_manager(hid_t plist, H5MM_allocate_t *alloc, void **alloc_info, H5MM_free_t *free, void
+ // herr_t H5Pget_vlen_mem_manager(hid_t plist, H5MM_allocate_t *alloc, void **alloc_info, H5MM_free_t
+ // *free, void
// **free_info )
- // herr_t H5Pset_vlen_mem_manager(hid_t plist, H5MM_allocate_t alloc, void *alloc_info, H5MM_free_t free, void
- // *free_info )
- // herr_t H5Pget_type_conv_cb(hid_t plist, H5T_conv_except_func_t *func, void **op_data)
+ // herr_t H5Pset_vlen_mem_manager(hid_t plist, H5MM_allocate_t alloc, void *alloc_info, H5MM_free_t free,
+ // void *free_info ) herr_t H5Pget_type_conv_cb(hid_t plist, H5T_conv_except_func_t *func, void **op_data)
// herr_t H5Pset_type_conv_cb( hid_t plist, H5T_conv_except_func_t func, void *op_data)
// #ifdef H5_HAVE_PARALLEL
- // herr_t H5Pget_mpio_actual_chunk_opt_mode(hid_t plist_id, H5D_mpio_actual_chunk_opt_mode_t *actual_chunk_opt_mode);
- // herr_t H5Pget_mpio_actual_io_mode(hid_t plist_id, H5D_mpio_actual_io_mode_t *actual_io_mode);
- // herr_t H5Pget_mpio_no_collective_cause(hid_t plist_id, uint32_t *local_no_collective_cause, uint32_t *global_no_collective_cause);
+ // herr_t H5Pget_mpio_actual_chunk_opt_mode(hid_t plist_id, H5D_mpio_actual_chunk_opt_mode_t
+ // *actual_chunk_opt_mode); herr_t H5Pget_mpio_actual_io_mode(hid_t plist_id, H5D_mpio_actual_io_mode_t
+ // *actual_io_mode); herr_t H5Pget_mpio_no_collective_cause(hid_t plist_id, uint32_t
+ // *local_no_collective_cause, uint32_t *global_no_collective_cause);
// #endif /* H5_HAVE_PARALLEL */
// Link creation property list (LCPL) routines //
@@ -10444,9 +10817,10 @@ public class H5 implements java.io.Serializable {
*
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5PLset_loading_state(int plugin_flags) throws HDF5LibraryException;
+ public synchronized static native void H5PLset_loading_state(int plugin_flags)
+ throws HDF5LibraryException;
/**
* H5PLget_loading_state retrieves the state of the dynamic plugins flag, plugin_flags..
@@ -10458,7 +10832,7 @@ public class H5 implements java.io.Serializable {
* If the value of plugin_flags is 0 (zero), all dynamic plugins are disabled.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5PLget_loading_state() throws HDF5LibraryException;
@@ -10469,7 +10843,7 @@ public class H5 implements java.io.Serializable {
* IN: Path for location of filter plugin libraries.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5PLappend(String plugin_path) throws HDF5LibraryException;
@@ -10480,7 +10854,7 @@ public class H5 implements java.io.Serializable {
* IN: Path for location of filter plugin libraries.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5PLprepend(String plugin_path) throws HDF5LibraryException;
@@ -10493,9 +10867,10 @@ public class H5 implements java.io.Serializable {
* IN: The table index (0-based).
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5PLreplace(String plugin_path, int index) throws HDF5LibraryException;
+ public synchronized static native void H5PLreplace(String plugin_path, int index)
+ throws HDF5LibraryException;
/**
* H5PLinsert inserts the plugin path at the specified index.
@@ -10506,9 +10881,10 @@ public class H5 implements java.io.Serializable {
* IN: The table index (0-based).
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5PLinsert(String plugin_path, int index) throws HDF5LibraryException;
+ public synchronized static native void H5PLinsert(String plugin_path, int index)
+ throws HDF5LibraryException;
/**
* H5PLremove removes the plugin path at the specified index.
@@ -10517,7 +10893,7 @@ public class H5 implements java.io.Serializable {
* IN: The table index (0-based).
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5PLremove(int index) throws HDF5LibraryException;
@@ -10530,7 +10906,7 @@ public class H5 implements java.io.Serializable {
* @return the current path at the index in plugin path table
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native String H5PLget(int index) throws HDF5LibraryException;
@@ -10540,7 +10916,7 @@ public class H5 implements java.io.Serializable {
* @return the current number of paths in the plugin path table
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5PLsize() throws HDF5LibraryException;
@@ -10565,14 +10941,14 @@ public class H5 implements java.io.Serializable {
* @return the reference (byte[]) if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
public synchronized static native byte[] H5Rcreate_object(long loc_id, String name, long access_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Rcreate_region creates the reference, pointing to the region represented by
@@ -10590,14 +10966,15 @@ public class H5 implements java.io.Serializable {
* @return the reference (byte[]) if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
- public synchronized static native byte[] H5Rcreate_region(long loc_id, String name, long space_id, long access_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ public synchronized static native byte[] H5Rcreate_region(long loc_id, String name, long space_id,
+ long access_id)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Rcreate_attr creates the reference, pointing to the attribute named attr name
@@ -10615,14 +10992,15 @@ public class H5 implements java.io.Serializable {
* @return the reference (byte[]) if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
- public synchronized static native byte[] H5Rcreate_attr(long loc_id, String name, String attr_name, long access_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ public synchronized static native byte[] H5Rcreate_attr(long loc_id, String name, String attr_name,
+ long access_id)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Rdestroy destroys a reference and releases resources.
@@ -10631,14 +11009,14 @@ public class H5 implements java.io.Serializable {
* IN: Reference to an object, region or attribute attached to an object.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
public synchronized static native void H5Rdestroy(byte[] ref_ptr)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
// Info //
@@ -10651,14 +11029,14 @@ public class H5 implements java.io.Serializable {
* @return a valid reference type if successful; otherwise returns H5R UNKNOWN.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
public synchronized static native int H5Rget_type(byte[] ref_ptr)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Requal determines whether two references point to the same object, region or attribute.
@@ -10671,14 +11049,14 @@ public class H5 implements java.io.Serializable {
* @return true if equal, else false
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
public synchronized static native boolean H5Requal(byte[] ref1_ptr, byte[] ref2_ptr)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Rcopy creates a copy of an existing reference.
@@ -10689,14 +11067,14 @@ public class H5 implements java.io.Serializable {
* @return a valid copy of the reference (byte[]) if successful.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
public synchronized static native byte[] H5Rcopy(byte[] src_ref_ptr)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
// Dereference //
@@ -10720,14 +11098,15 @@ public class H5 implements java.io.Serializable {
* @return a valid identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
public static long H5Ropen_object(byte[] ref_ptr, long rapl_id, long oapl_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException
+ {
long id = _H5Ropen_object(ref_ptr, rapl_id, oapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Ropen_object add {}", id);
@@ -10738,12 +11117,13 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Ropen_object(byte[] ref_ptr, long rapl_id, long oapl_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Ropen region creates a copy of the dataspace of the dataset pointed to by a region reference,
- * ref ptr, and defines a selection matching the selection pointed to by ref ptr within the dataspace copy.
- * Use H5Sclose to release the dataspace identifier returned by this function when the identifier is no longer needed.
+ * ref ptr, and defines a selection matching the selection pointed to by ref ptr within the dataspace
+ * copy. Use H5Sclose to release the dataspace identifier returned by this function when the identifier is
+ * no longer needed.
*
* @param ref_ptr
* IN: Reference to an object, region or attribute attached to an object.
@@ -10759,14 +11139,15 @@ public class H5 implements java.io.Serializable {
* @return a valid dataspace identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
public static long H5Ropen_region(byte[] ref_ptr, long rapl_id, long oapl_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException
+ {
long id = _H5Ropen_region(ref_ptr, rapl_id, oapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Ropen_region add {}", id);
@@ -10777,7 +11158,7 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Ropen_region(byte[] ref_ptr, long rapl_id, long oapl_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Ropen_attr opens the attribute attached to the object and returns an identifier.
@@ -10798,14 +11179,15 @@ public class H5 implements java.io.Serializable {
* @return a valid attribute identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
public static long H5Ropen_attr(byte[] ref_ptr, long rapl_id, long aapl_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException
+ {
long id = _H5Ropen_attr(ref_ptr, rapl_id, aapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Ropen_attr add {}", id);
@@ -10816,7 +11198,7 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Ropen_attr(byte[] ref_ptr, long rapl_id, long aapl_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
// Get type //
@@ -10833,14 +11215,14 @@ public class H5 implements java.io.Serializable {
* @return Returns the object type
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - array is null.
+ * array is null.
* @exception IllegalArgumentException
- * - array is invalid.
+ * array is invalid.
**/
public synchronized static native int H5Rget_obj_type3(byte[] ref_ptr, long rapl_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
// Get name //
@@ -10853,14 +11235,14 @@ public class H5 implements java.io.Serializable {
* @return Returns the file name of the reference
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - array is null.
+ * array is null.
* @exception IllegalArgumentException
- * - array is invalid.
+ * array is invalid.
**/
public synchronized static native String H5Rget_file_name(byte[] ref_ptr)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Rget_obj_name retrieves the object name for the object, region or attribute reference pointed to.
@@ -10875,14 +11257,14 @@ public class H5 implements java.io.Serializable {
* @return Returns the object name of the reference
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - array is null.
+ * array is null.
* @exception IllegalArgumentException
- * - array is invalid.
+ * array is invalid.
**/
public synchronized static native String H5Rget_obj_name(byte[] ref_ptr, long rapl_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Rget_attr_name retrieves the attribute name for the object, region or attribute reference pointed to.
@@ -10893,14 +11275,14 @@ public class H5 implements java.io.Serializable {
* @return Returns the attribute name of the reference
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - array is null.
+ * array is null.
* @exception IllegalArgumentException
- * - array is invalid.
+ * array is invalid.
**/
public synchronized static native String H5Rget_attr_name(byte[] ref_ptr)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
// ////////////////////////////////////////////////////////////
// //
@@ -10908,12 +11290,13 @@ public class H5 implements java.io.Serializable {
// //
// ////////////////////////////////////////////////////////////
- private synchronized static native int H5Rcreate(byte[] ref, long loc_id, String name, int ref_type, long space_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ private synchronized static native int H5Rcreate(byte[] ref, long loc_id, String name, int ref_type,
+ long space_id)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
- * H5Rcreate creates the reference, ref, of the type specified in ref_type, pointing to the object name located at
- * loc_id.
+ * H5Rcreate creates the reference, ref, of the type specified in ref_type, pointing to the object name
+ * located at loc_id.
*
* @param loc_id
* IN: Location identifier used to locate the object being pointed to.
@@ -10927,14 +11310,15 @@ public class H5 implements java.io.Serializable {
* @return the reference (byte[]) if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
public synchronized static byte[] H5Rcreate(long loc_id, String name, int ref_type, long space_id)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException
+ {
/* These sizes are correct for HDF5.1.2 */
int ref_size = 8;
if (ref_type == HDF5Constants.H5R_DATASET_REGION) {
@@ -10963,14 +11347,15 @@ public class H5 implements java.io.Serializable {
* @return valid identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - output array is null.
+ * output array is null.
* @exception IllegalArgumentException
- * - output array is invalid.
+ * output array is invalid.
**/
public static long H5Rdereference(long dataset, long access_list, int ref_type, byte[] ref)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException
+ {
long id = _H5Rdereference(dataset, access_list, ref_type, ref);
if (id > 0) {
log.trace("OPEN_IDS: H5Rdereference add {}", id);
@@ -10980,8 +11365,9 @@ public class H5 implements java.io.Serializable {
return id;
}
- private synchronized static native long _H5Rdereference(long dataset, long access_list, int ref_type, byte[] ref)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ private synchronized static native long _H5Rdereference(long dataset, long access_list, int ref_type,
+ byte[] ref)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Rget_name retrieves a name for the object identified by ref.
@@ -10997,23 +11383,25 @@ public class H5 implements java.io.Serializable {
* @param size
* IN: The size of the name buffer.
*
- * @return Returns the length of the name if successful, returning 0 (zero) if no name is associated with the
- * identifier. Otherwise returns a negative value.
+ * @return Returns the length of the name if successful, returning 0 (zero) if no name is associated with
+ * the identifier. Otherwise returns a negative value.
*
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - size is null.
+ * size is null.
* @exception IllegalArgumentException
- * - Argument is illegal.
+ * Argument is illegal.
*
**/
- public synchronized static native long H5Rget_name(long loc_id, int ref_type, byte[] ref, String[] name, long size)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ public synchronized static native long H5Rget_name(long loc_id, int ref_type, byte[] ref, String[] name,
+ long size)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
- * H5Rget_obj_type Given a reference to an object ref, H5Rget_obj_type returns the type of the object pointed to.
+ * H5Rget_obj_type Given a reference to an object ref, H5Rget_obj_type returns the type of the object
+ * pointed to.
*
* @param loc_id
* IN: loc_id of the reference object.
@@ -11025,26 +11413,27 @@ public class H5 implements java.io.Serializable {
* @return Returns the object type
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - array is null.
+ * array is null.
* @exception IllegalArgumentException
- * - array is invalid.
+ * array is invalid.
**/
public synchronized static native int H5Rget_obj_type(long loc_id, int ref_type, byte ref[])
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Rget_obj_type2 Retrieves the type of object that an object reference points to.
*
* @see public static int H5Rget_obj_type(int loc_id, int ref_type, byte ref[])
**/
- private synchronized static native int H5Rget_obj_type2(long loc_id, int ref_type, byte ref[], int[] obj_type)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ private synchronized static native int H5Rget_obj_type2(long loc_id, int ref_type, byte ref[],
+ int[] obj_type)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
- * Given a reference to an object ref, H5Rget_region creates a copy of the dataspace of the dataset pointed to and
- * defines a selection in the copy which is the region pointed to.
+ * Given a reference to an object ref, H5Rget_region creates a copy of the dataspace of the dataset
+ * pointed to and defines a selection in the copy which is the region pointed to.
*
* @param loc_id
* IN: loc_id of the reference object.
@@ -11056,14 +11445,15 @@ public class H5 implements java.io.Serializable {
* @return a valid identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - output array is null.
+ * output array is null.
* @exception IllegalArgumentException
- * - output array is invalid.
+ * output array is invalid.
**/
- public static long H5Rget_region(long loc_id, int ref_type, byte[] ref) throws HDF5LibraryException,
- NullPointerException, IllegalArgumentException {
+ public static long H5Rget_region(long loc_id, int ref_type, byte[] ref)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException
+ {
long id = _H5Rget_region(loc_id, ref_type, ref);
if (id > 0) {
log.trace("OPEN_IDS: H5Rget_region add {}", id);
@@ -11074,7 +11464,7 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Rget_region(long loc_id, int ref_type, byte[] ref)
- throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
// ////////////////////////////////////////////////////////////
// //
@@ -11093,9 +11483,10 @@ public class H5 implements java.io.Serializable {
* @return a dataspace identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Screate(int type) throws HDF5LibraryException {
+ public static long H5Screate(int type) throws HDF5LibraryException
+ {
long id = _H5Screate(type);
if (id > 0) {
log.trace("OPEN_IDS: H5Screate add {}", id);
@@ -11120,12 +11511,13 @@ public class H5 implements java.io.Serializable {
* @return a dataspace identifier
*
* @exception HDF5Exception
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - dims or maxdims is null.
+ * dims or maxdims is null.
**/
- public static long H5Screate_simple(int rank, long[] dims, long[] maxdims) throws HDF5Exception,
- NullPointerException {
+ public static long H5Screate_simple(int rank, long[] dims, long[] maxdims)
+ throws HDF5Exception, NullPointerException
+ {
long id = _H5Screate_simple(rank, dims, maxdims);
if (id > 0) {
log.trace("OPEN_IDS: H5Screate_simple add {}", id);
@@ -11136,7 +11528,7 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Screate_simple(int rank, long[] dims, long[] maxdims)
- throws HDF5Exception, NullPointerException;
+ throws HDF5Exception, NullPointerException;
/**
* H5Sset_extent_simple sets or resets the size of an existing dataspace.
@@ -11153,10 +11545,11 @@ public class H5 implements java.io.Serializable {
* @return a dataspace identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Sset_extent_simple(long space_id, int rank, long[] current_size,
- long[] maximum_size) throws HDF5LibraryException, NullPointerException;
+ long[] maximum_size)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Sset_extent_simple sets or resets the size of an existing dataspace.
@@ -11173,14 +11566,16 @@ public class H5 implements java.io.Serializable {
* @return a dataspace identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static long H5Sset_extent_simple(long space_id, int rank, byte[] current_size,
- byte[] maximum_size) throws HDF5LibraryException, NullPointerException {
- ByteBuffer csbb = ByteBuffer.wrap(current_size);
- long[] lacs = (csbb.asLongBuffer()).array();
+ byte[] maximum_size)
+ throws HDF5LibraryException, NullPointerException
+ {
+ ByteBuffer csbb = ByteBuffer.wrap(current_size);
+ long[] lacs = (csbb.asLongBuffer()).array();
ByteBuffer maxsbb = ByteBuffer.wrap(maximum_size);
- long[] lamaxs = (maxsbb.asLongBuffer()).array();
+ long[] lamaxs = (maxsbb.asLongBuffer()).array();
return H5Sset_extent_simple(space_id, rank, lacs, lamaxs);
}
@@ -11193,9 +11588,10 @@ public class H5 implements java.io.Serializable {
* @return a dataspace identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Scopy(long space_id) throws HDF5LibraryException {
+ public static long H5Scopy(long space_id) throws HDF5LibraryException
+ {
long id = _H5Scopy(space_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Scopy add {}", id);
@@ -11216,9 +11612,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static int H5Sclose(long space_id) throws HDF5LibraryException {
+ public static int H5Sclose(long space_id) throws HDF5LibraryException
+ {
if (space_id < 0)
return 0; // throw new HDF5LibraryException("Negative ID");;
@@ -11239,9 +11636,10 @@ public class H5 implements java.io.Serializable {
* @return the buffer for the object to be encoded into.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native byte[] H5Sencode(long obj_id) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native byte[] H5Sencode(long obj_id)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Sdecode reconstructs the HDF5 data space object and returns a new object handle for it.
@@ -11252,11 +11650,12 @@ public class H5 implements java.io.Serializable {
* @return a new object handle
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
**/
- public synchronized static native long H5Sdecode(byte[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native long H5Sdecode(byte[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Sget_simple_extent_npoints determines the number of elements in a dataspace.
@@ -11266,9 +11665,10 @@ public class H5 implements java.io.Serializable {
* @return the number of elements in the dataspace if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native long H5Sget_simple_extent_npoints(long space_id) throws HDF5LibraryException;
+ public synchronized static native long H5Sget_simple_extent_npoints(long space_id)
+ throws HDF5LibraryException;
/**
* H5Sget_simple_extent_ndims determines the dimensionality (or rank) of a dataspace.
@@ -11279,13 +11679,14 @@ public class H5 implements java.io.Serializable {
* @return the number of dimensions in the dataspace if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Sget_simple_extent_ndims(long space_id) throws HDF5LibraryException;
+ public synchronized static native int H5Sget_simple_extent_ndims(long space_id)
+ throws HDF5LibraryException;
/**
- * H5Sget_simple_extent_dims returns the size and maximum sizes of each dimension of a dataspace through the dims
- * and maxdims parameters.
+ * H5Sget_simple_extent_dims returns the size and maximum sizes of each dimension of a dataspace through
+ * the dims and maxdims parameters.
*
* @param space_id
* IN: Identifier of the dataspace object to query
@@ -11297,12 +11698,13 @@ public class H5 implements java.io.Serializable {
* @return the number of dimensions in the dataspace if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - dims or maxdims is null.
+ * dims or maxdims is null.
**/
- public synchronized static native int H5Sget_simple_extent_dims(long space_id, long[] dims, long[] maxdims)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Sget_simple_extent_dims(long space_id, long[] dims,
+ long[] maxdims)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Sis_simple determines whether a dataspace is a simple dataspace.
@@ -11313,7 +11715,7 @@ public class H5 implements java.io.Serializable {
* @return true if is a simple dataspace
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native boolean H5Sis_simple(long space_id) throws HDF5LibraryException;
@@ -11326,9 +11728,10 @@ public class H5 implements java.io.Serializable {
* @return a dataspace class name if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Sget_simple_extent_type(long space_id) throws HDF5LibraryException;
+ public synchronized static native int H5Sget_simple_extent_type(long space_id)
+ throws HDF5LibraryException;
/**
* H5Sset_extent_none removes the extent from a dataspace and sets the type to H5S_NONE.
@@ -11339,13 +11742,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Sset_extent_none(long space_id) throws HDF5LibraryException;
/**
- * H5Sextent_copy copies the extent from source_space_id to dest_space_id. This action may change the type of the
- * dataspace.
+ * H5Sextent_copy copies the extent from source_space_id to dest_space_id. This action may change the type
+ * of the dataspace.
*
* @param dest_space_id
* IN: The identifier for the dataspace from which the extent is copied.
@@ -11355,13 +11758,14 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Sextent_copy(long dest_space_id, long source_space_id)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
- * H5Sextent_equal determines whether the dataspace extents of two dataspaces, space1_id and space2_id, are equal.
+ * H5Sextent_equal determines whether the dataspace extents of two dataspaces, space1_id and space2_id,
+ * are equal.
*
* @param first_space_id
* IN: The identifier for the first dataspace.
@@ -11371,10 +11775,10 @@ public class H5 implements java.io.Serializable {
* @return true if successful, else false
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native boolean H5Sextent_equal(long first_space_id, long second_space_id)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/***************** Operations on dataspace selections *****************/
@@ -11387,7 +11791,7 @@ public class H5 implements java.io.Serializable {
* @return the dataspace selection type if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Sget_select_type(long space_id) throws HDF5LibraryException;
@@ -11400,20 +11804,24 @@ public class H5 implements java.io.Serializable {
* @return the number of elements in the selection if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Sget_select_npoints(long space_id) throws HDF5LibraryException;
/**
* H5Sselect_copy copies all the selection information (including offset) from the source
* dataspace to the destination dataspace.
- * @param dst_id ID of the destination dataspace
- * @param src_id ID of the source dataspace
+ *
+ * @param dst_id
+ * ID of the destination dataspace
+ * @param src_id
+ * ID of the source dataspace
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Sselect_copy(long dst_id, long src_id) throws HDF5LibraryException;
+ public synchronized static native void H5Sselect_copy(long dst_id, long src_id)
+ throws HDF5LibraryException;
/**
* H5Sselect_valid verifies that the selection for the dataspace.
@@ -11424,7 +11832,7 @@ public class H5 implements java.io.Serializable {
* @return true if the selection is contained within the extent and FALSE if it is not or is an error.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native boolean H5Sselect_valid(long space_id) throws HDF5LibraryException;
@@ -11437,18 +11845,17 @@ public class H5 implements java.io.Serializable {
* Offset to subtract
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - offset is null.
+ * offset is null.
**/
- public synchronized static native void H5Sselect_adjust(long space_id, long[][] offset)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Sselect_adjust(long space_id, long[][] offset)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Sget_select_bounds retrieves the coordinates of the bounding box containing the current selection and places
- * them into user-supplied buffers.
- * <P>
- * The start and end buffers must be large enough to hold the dataspace rank number of coordinates.
+ * H5Sget_select_bounds retrieves the coordinates of the bounding box containing the current selection and
+ * places them into user-supplied buffers. <P> The start and end buffers must be large enough to hold the
+ * dataspace rank number of coordinates.
*
* @param space_id
* Identifier of dataspace to release.
@@ -11460,50 +11867,54 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful,with start and end initialized.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - start or end is null.
+ * start or end is null.
**/
public synchronized static native int H5Sget_select_bounds(long space_id, long[] start, long[] end)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Sselect_shape_same checks to see if the current selection in the dataspaces are the same
* dimensionality and shape.
* This is primarily used for reading the entire selection in one swoop.
*
- * @param space1_id ID of 1st Dataspace pointer to compare
- * @param space2_id ID of 2nd Dataspace pointer to compare
+ * @param space1_id
+ * ID of 1st Dataspace pointer to compare
+ * @param space2_id
+ * ID of 2nd Dataspace pointer to compare
*
* @return true if the selection is the same dimensionality and shape;
* false otherwise
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native boolean H5Sselect_shape_same(long space1_id, long space2_id) throws HDF5LibraryException;
+ public synchronized static native boolean H5Sselect_shape_same(long space1_id, long space2_id)
+ throws HDF5LibraryException;
/**
* H5Sselect_intersect_block checks to see if the current selection in the
* dataspace intersects with the block given.
*
* @param space_id
- * ID of dataspace pointer to compare
+ * ID of dataspace pointer to compare
* @param start
- * Starting coordinate of block
+ * Starting coordinate of block
* @param end
- * Opposite ("ending") coordinate of block
+ * Opposite ("ending") coordinate of block
*
* @return a TRUE if the current selection in the dataspace intersects with the block given
* FALSE otherwise
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - offset is null.
+ * offset is null.
**/
- public synchronized static native boolean H5Sselect_intersect_block(long space_id, long[] start, long[] end)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native boolean H5Sselect_intersect_block(long space_id, long[] start,
+ long[] end)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Soffset_simple sets the offset of a simple dataspace space_id.
@@ -11516,12 +11927,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - offset array is null.
+ * offset array is null.
**/
- public synchronized static native int H5Soffset_simple(long space_id, byte[] offset) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Soffset_simple(long space_id, byte[] offset)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Soffset_simple sets the offset of a simple dataspace space_id.
@@ -11534,22 +11945,22 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - offset array is null.
+ * offset array is null.
**/
- public synchronized static int H5Soffset_simple(long space_id, long[] offset) throws HDF5Exception,
- NullPointerException {
- if (offset == null) {
+ public synchronized static int H5Soffset_simple(long space_id, long[] offset)
+ throws HDF5Exception, NullPointerException
+ {
+ if (offset == null)
return -1;
- }
HDFArray theArray = new HDFArray(offset);
- byte[] theArr = theArray.byteify();
+ byte[] theArr = theArray.byteify();
int retVal = H5Soffset_simple(space_id, theArr);
- theArr = null;
+ theArr = null;
theArray = null;
return retVal;
}
@@ -11563,7 +11974,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Sselect_all(long space_id) throws HDF5LibraryException;
@@ -11575,7 +11986,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Sselect_none(long space_id) throws HDF5LibraryException;
@@ -11594,10 +12005,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- private synchronized static native int H5Sselect_elements(long space_id, int op, int num_elements, byte[] coord)
- throws HDF5LibraryException, NullPointerException;
+ private synchronized static native int H5Sselect_elements(long space_id, int op, int num_elements,
+ byte[] coord)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Sselect_elements selects array elements to be included in the selection for the space_id dataspace.
@@ -11614,24 +12026,25 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5Exception
- * - Error in the data conversion
+ * Error in the data conversion
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - cord array is
+ * cord array is
**/
- public synchronized static int H5Sselect_elements(long space_id, int op, int num_elements, long[][] coord2D)
- throws HDF5Exception, HDF5LibraryException, NullPointerException {
- if (coord2D == null) {
+ public synchronized static int H5Sselect_elements(long space_id, int op, int num_elements,
+ long[][] coord2D)
+ throws HDF5Exception, HDF5LibraryException, NullPointerException
+ {
+ if (coord2D == null)
return -1;
- }
HDFArray theArray = new HDFArray(coord2D);
- byte[] coord = theArray.byteify();
+ byte[] coord = theArray.byteify();
int retVal = H5Sselect_elements(space_id, op, num_elements, coord);
- coord = null;
+ coord = null;
theArray = null;
return retVal;
}
@@ -11645,14 +12058,15 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native long H5Sget_select_elem_npoints(long spaceid) throws HDF5LibraryException;
+ public synchronized static native long H5Sget_select_elem_npoints(long spaceid)
+ throws HDF5LibraryException;
/**
- * H5Sget_select_elem_pointlist returns an array of of element points in the current dataspace selection. The point
- * coordinates have the same dimensionality (rank) as the dataspace they are located within, one coordinate per
- * point.
+ * H5Sget_select_elem_pointlist returns an array of of element points in the current dataspace selection.
+ * The point coordinates have the same dimensionality (rank) as the dataspace they are located within, one
+ * coordinate per point.
*
* @param spaceid
* Identifier of dataspace to release.
@@ -11666,16 +12080,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
**/
- public synchronized static native int H5Sget_select_elem_pointlist(long spaceid, long startpoint, long numpoints,
- long[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Sget_select_elem_pointlist(long spaceid, long startpoint,
+ long numpoints, long[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace specified
- * by space_id. The start, stride, count, and block arrays must be the same size as the rank of the dataspace.
+ * H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace
+ * specified by space_id. The start, stride, count, and block arrays must be the same size as the rank of
+ * the dataspace.
*
* @param space_id
* IN: Identifier of dataspace selection to modify
@@ -11693,29 +12109,32 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
public synchronized static int H5Sselect_hyperslab(long space_id, int op, byte[] start, byte[] stride,
- byte[] count, byte[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
- ByteBuffer startbb = ByteBuffer.wrap(start);
- long[] lastart = (startbb.asLongBuffer()).array();
+ byte[] count, byte[] block)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException
+ {
+ ByteBuffer startbb = ByteBuffer.wrap(start);
+ long[] lastart = (startbb.asLongBuffer()).array();
ByteBuffer stridebb = ByteBuffer.wrap(stride);
- long[] lastride = (stridebb.asLongBuffer()).array();
- ByteBuffer countbb = ByteBuffer.wrap(count);
- long[] lacount = (countbb.asLongBuffer()).array();
- ByteBuffer blockbb = ByteBuffer.wrap(block);
- long[] lablock = (blockbb.asLongBuffer()).array();
+ long[] lastride = (stridebb.asLongBuffer()).array();
+ ByteBuffer countbb = ByteBuffer.wrap(count);
+ long[] lacount = (countbb.asLongBuffer()).array();
+ ByteBuffer blockbb = ByteBuffer.wrap(block);
+ long[] lablock = (blockbb.asLongBuffer()).array();
return H5Sselect_hyperslab(space_id, op, lastart, lastride, lacount, lablock);
}
/**
- * H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace specified
- * by space_id. The start, stride, count, and block arrays must be the same size as the rank of the dataspace.
+ * H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace
+ * specified by space_id. The start, stride, count, and block arrays must be the same size as the rank of
+ * the dataspace.
*
* @param space_id
* IN: Identifier of dataspace selection to modify
@@ -11733,15 +12152,15 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
- public synchronized static native int H5Sselect_hyperslab(long space_id, int op, long[] start, long[] stride,
- long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
-
+ public synchronized static native int H5Sselect_hyperslab(long space_id, int op, long[] start,
+ long[] stride, long[] count, long[] block)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Scombine_hyperslab combines a hyperslab selection with the current selection for a dataspace,
@@ -11767,14 +12186,15 @@ public class H5 implements java.io.Serializable {
* @return a dataspace ID on success / H5I_INVALID_HID on failure
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an input array is null.
+ * an input array is null.
* @exception IllegalArgumentException
- * - an input array is invalid.
+ * an input array is invalid.
**/
- public synchronized static native long H5Scombine_hyperslab(long space_id, int op, long[] start, long[] stride,
- long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ public synchronized static native long H5Scombine_hyperslab(long space_id, int op, long[] start,
+ long[] stride, long[] count, long[] block)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Smodify_select refine an existing hyperslab selection with an operation, using a second
@@ -11782,16 +12202,17 @@ public class H5 implements java.io.Serializable {
* space1 operated on by space2.
*
* @param space1_id
- * ID of the destination dataspace
+ * ID of the destination dataspace
* @param op
- * Operation to perform on current selection.
+ * Operation to perform on current selection.
* @param space2_id
- * ID of the source dataspace
+ * ID of the source dataspace
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Smodify_select(long space1_id, int op, long space2_id) throws HDF5LibraryException;
+ public synchronized static native void H5Smodify_select(long space1_id, int op, long space2_id)
+ throws HDF5LibraryException;
/**
* H5Scombine_select combines two existing hyperslab selections with an operation, returning
@@ -11799,18 +12220,19 @@ public class H5 implements java.io.Serializable {
* space1 is copied for the dataspace extent of the newly created dataspace.
*
* @param space1_id
- * ID of the first dataspace
+ * ID of the first dataspace
* @param op
- * Operation to perform on current selection.
+ * Operation to perform on current selection.
* @param space2_id
- * ID of the second dataspace
+ * ID of the second dataspace
*
* @return a dataspace ID on success / H5I_INVALID_HID on failure
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native long H5Scombine_select(long space1_id, int op, long space2_id) throws HDF5LibraryException;
+ public synchronized static native long H5Scombine_select(long space1_id, int op, long space2_id)
+ throws HDF5LibraryException;
/**
* H5Sis_regular_hyperslab retrieves a regular hyperslab selection for the dataspace specified
@@ -11822,50 +12244,56 @@ public class H5 implements java.io.Serializable {
* @return a TRUE/FALSE for hyperslab selection if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native boolean H5Sis_regular_hyperslab(long space_id) throws HDF5LibraryException;
+ public synchronized static native boolean H5Sis_regular_hyperslab(long space_id)
+ throws HDF5LibraryException;
/**
* H5Sget_regular_hyperslab determines if a hyperslab selection is regular for the dataspace specified
- * by space_id. The start, stride, count, and block arrays must be the same size as the rank of the dataspace.
+ * by space_id. The start, stride, count, and block arrays must be the same size as the rank of the
+ * dataspace.
*
* @param space_id
* IN: Identifier of dataspace selection to modify
* @param start
- * OUT: Offset of start of hyperslab
+ * OUT: Offset of start of hyperslab
* @param stride
- * OUT: Hyperslab stride.
+ * OUT: Hyperslab stride.
* @param count
- * OUT: Number of blocks included in hyperslab.
+ * OUT: Number of blocks included in hyperslab.
* @param block
- * OUT: Size of block in hyperslab.
+ * OUT: Size of block in hyperslab.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - an output array is null.
+ * an output array is null.
* @exception IllegalArgumentException
- * - an output array is invalid.
+ * an output array is invalid.
**/
- public synchronized static native void H5Sget_regular_hyperslab(long space_id, long[] start, long[] stride, long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ public synchronized static native void H5Sget_regular_hyperslab(long space_id, long[] start,
+ long[] stride, long[] count, long[] block)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
- /**
- * H5Sget_select_hyper_nblocks returns the number of hyperslab blocks in the current dataspace selection.
- *
- * @param spaceid
- * Identifier of dataspace to release.
- *
- * @return a non-negative value if successful
- *
- * @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
- **/
- public synchronized static native long H5Sget_select_hyper_nblocks(long spaceid) throws HDF5LibraryException;
+ /**
+ * H5Sget_select_hyper_nblocks returns the number of hyperslab blocks in the current dataspace selection.
+ *
+ * @param spaceid
+ * Identifier of dataspace to release.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * Error from the HDF-5 Library.
+ **/
+ public synchronized static native long H5Sget_select_hyper_nblocks(long spaceid)
+ throws HDF5LibraryException;
/**
* H5Sget_select_hyper_blocklist returns an array of hyperslab blocks. The block coordinates have the same
- * dimensionality (rank) as the dataspace they are located within. The list of blocks is formatted as follows:
+ * dimensionality (rank) as the dataspace they are located within. The list of blocks is formatted as
+ * follows:
*
* <pre>
* &lt;"start" coordinate&gt;, immediately followed by
@@ -11882,17 +12310,19 @@ public class H5 implements java.io.Serializable {
* @param numblocks
* number of blocks to retrieve
* @param buf
- * returns blocks startblock to startblock+num-1, each block is <i>rank</i> * 2 (corners) longs.
+ * returns blocks startblock to startblock+num-1, each block is <i>rank</i> * 2 (corners)
+ * longs.
*
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
**/
- public synchronized static native int H5Sget_select_hyper_blocklist(long spaceid, long startblock, long numblocks,
- long[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Sget_select_hyper_blocklist(long spaceid, long startblock,
+ long numblocks, long[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Sselect_project_intersection projects the intersection of the selections of src_space_id and
@@ -11904,30 +12334,30 @@ public class H5 implements java.io.Serializable {
* @param dst_space_id
* Selection that is mapped to src_space_id
* @param src_intersect_space_id
- * Selection whose intersection with src_space_id is projected to dst_space_id to obtain the result
+ * Selection whose intersection with src_space_id is projected to dst_space_id to obtain the
+ * result
*
* @return a dataspace with a selection equal to the intersection of
* src_intersect_space_id and src_space_id projected from src_space to dst_space on success
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native long H5Sselect_project_intersection(long src_space_id, long dst_space_id,
- long src_intersect_space_id) throws HDF5LibraryException;
-
-
- // /////// unimplemented ////////
- ///// Operations on dataspace selections /////
-
- //
- ///// Operations on dataspace selection iterators /////
- //public synchronized static native H5Ssel_iter_create(hid_t spaceid, size_t elmt_size, unsigned flags);
- //public synchronized static native H5Ssel_iter_get_seq_list(hid_t sel_iter_id, size_t maxseq, size_t maxbytes, size_t *nseq,
- // size_t *nbytes, hsize_t *off, size_t *len);
- //public synchronized static native H5Ssel_iter_reset(hid_t sel_iter_id, hid_t space_id);
- //public synchronized static native H5Ssel_iter_close(hid_t sel_iter_id);
+ public synchronized static native long
+ H5Sselect_project_intersection(long src_space_id, long dst_space_id, long src_intersect_space_id)
+ throws HDF5LibraryException;
+ // /////// unimplemented ////////
+ ///// Operations on dataspace selections /////
+ //
+ ///// Operations on dataspace selection iterators /////
+ // public synchronized static native H5Ssel_iter_create(hid_t spaceid, size_t elmt_size, unsigned
+ // flags); public synchronized static native H5Ssel_iter_get_seq_list(hid_t sel_iter_id, size_t maxseq,
+ // size_t maxbytes, size_t *nseq,
+ // size_t *nbytes, hsize_t *off, size_t *len);
+ // public synchronized static native H5Ssel_iter_reset(hid_t sel_iter_id, hid_t space_id);
+ // public synchronized static native H5Ssel_iter_close(hid_t sel_iter_id);
// ////////////////////////////////////////////////////////////
// //
@@ -11948,12 +12378,13 @@ public class H5 implements java.io.Serializable {
* @return a valid datatype identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - dim is null.
+ * dim is null.
**/
- public static long H5Tarray_create(long base_id, int ndims, long[] dim) throws HDF5LibraryException,
- NullPointerException {
+ public static long H5Tarray_create(long base_id, int ndims, long[] dim)
+ throws HDF5LibraryException, NullPointerException
+ {
long id = _H5Tarray_create2(base_id, ndims, dim);
if (id > 0) {
log.trace("OPEN_IDS: H5Tarray_create add {}", id);
@@ -11964,7 +12395,7 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Tarray_create2(long base_id, int ndims, long[] dim)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Tclose releases a datatype.
@@ -11975,9 +12406,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static int H5Tclose(long type_id) throws HDF5LibraryException {
+ public static int H5Tclose(long type_id) throws HDF5LibraryException
+ {
if (type_id < 0)
return 0; // throw new HDF5LibraryException("Negative ID");;
@@ -12006,16 +12438,17 @@ public class H5 implements java.io.Serializable {
* IN: Datatype access property list.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native void H5Tcommit(long loc_id, String name, long type_id, long lcpl_id,
- long tcpl_id, long tapl_id) throws HDF5LibraryException, NullPointerException;
+ long tcpl_id, long tapl_id)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Tcommit_anon commits a transient datatype (not immutable) to a file, turning it into a named datatype with the
- * specified creation and property lists.
+ * H5Tcommit_anon commits a transient datatype (not immutable) to a file, turning it into a named datatype
+ * with the specified creation and property lists.
*
* @param loc_id
* IN: Location identifier.
@@ -12027,14 +12460,14 @@ public class H5 implements java.io.Serializable {
* IN: Datatype access property list.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Tcommit_anon(long loc_id, long type_id, long tcpl_id, long tapl_id)
- throws HDF5LibraryException;
+ public synchronized static native void H5Tcommit_anon(long loc_id, long type_id, long tcpl_id,
+ long tapl_id) throws HDF5LibraryException;
/**
- * H5Tcommitted queries a type to determine whether the type specified by the type identifier is a named type or a
- * transient type.
+ * H5Tcommitted queries a type to determine whether the type specified by the type identifier is a named
+ * type or a transient type.
*
* @param type_id
* IN: Identifier of datatype.
@@ -12042,13 +12475,13 @@ public class H5 implements java.io.Serializable {
* @return true the datatype has been committed
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native boolean H5Tcommitted(long type_id) throws HDF5LibraryException;
/**
- * H5Tcompiler_conv finds out whether the library's conversion function from type src_id to type dst_id is a
- * compiler (hard) conversion.
+ * H5Tcompiler_conv finds out whether the library's conversion function from type src_id to type dst_id is
+ * a compiler (hard) conversion.
*
* @param src_id
* IN: Identifier of source datatype.
@@ -12056,9 +12489,10 @@ public class H5 implements java.io.Serializable {
* IN: Identifier of destination datatype.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Tcompiler_conv(long src_id, long dst_id) throws HDF5LibraryException;
+ public synchronized static native void H5Tcompiler_conv(long src_id, long dst_id)
+ throws HDF5LibraryException;
/**
** H5Tconvert converts nelmts elements from the type specified by the src_id identifier to type dst_id.
@@ -12077,12 +12511,13 @@ public class H5 implements java.io.Serializable {
* IN: Dataset transfer property list identifier.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
**/
public synchronized static native void H5Tconvert(long src_id, long dst_id, long nelmts, byte[] buf,
- byte[] background, long plist_id) throws HDF5LibraryException, NullPointerException;
+ byte[] background, long plist_id)
+ throws HDF5LibraryException, NullPointerException;
// int H5Tconvert(int src_id, int dst_id, long nelmts, Pointer buf, Pointer background, int plist_id);
@@ -12090,15 +12525,16 @@ public class H5 implements java.io.Serializable {
* H5Tcopy copies an existing datatype. The returned type is always transient and unlocked.
*
* @param type_id
- * IN: Identifier of datatype to copy. Can be a datatype identifier, a predefined datatype (defined in
- * H5Tpublic.h), or a dataset Identifier.
+ * IN: Identifier of datatype to copy. Can be a datatype identifier, a predefined datatype
+ * (defined in H5Tpublic.h), or a dataset Identifier.
*
* @return a datatype identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Tcopy(long type_id) throws HDF5LibraryException {
+ public static long H5Tcopy(long type_id) throws HDF5LibraryException
+ {
long id = _H5Tcopy(type_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Tcopy add {}", id);
@@ -12121,9 +12557,10 @@ public class H5 implements java.io.Serializable {
* @return datatype identifier
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Tcreate(int tclass, long size) throws HDF5LibraryException {
+ public static long H5Tcreate(int tclass, long size) throws HDF5LibraryException
+ {
long id = _H5Tcreate(tclass, size);
if (id > 0) {
log.trace("OPEN_IDS: H5Tcreate add {}", id);
@@ -12144,11 +12581,12 @@ public class H5 implements java.io.Serializable {
* @return a new object handle
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
**/
- public static long H5Tdecode(byte[] buf) throws HDF5LibraryException, NullPointerException {
+ public static long H5Tdecode(byte[] buf) throws HDF5LibraryException, NullPointerException
+ {
long id = _H5Tdecode(buf);
if (id > 0) {
log.trace("OPEN_IDS: H5Tdecode add {}", id);
@@ -12158,11 +12596,12 @@ public class H5 implements java.io.Serializable {
return id;
}
- private synchronized static native long _H5Tdecode(byte[] buf) throws HDF5LibraryException, NullPointerException;
+ private synchronized static native long _H5Tdecode(byte[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Tdetect_class determines whether the datatype specified in dtype_id contains any datatypes of the datatype
- * class specified in dtype_class.
+ * H5Tdetect_class determines whether the datatype specified in dtype_id contains any datatypes of the
+ * datatype class specified in dtype_class.
*
* @param type_id
* IN: Identifier of datatype to query.
@@ -12172,9 +12611,10 @@ public class H5 implements java.io.Serializable {
* @return true if the datatype specified in dtype_id contains any datatypes of the datatype class
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native boolean H5Tdetect_class(long type_id, int cls) throws HDF5LibraryException;
+ public synchronized static native boolean H5Tdetect_class(long type_id, int cls)
+ throws HDF5LibraryException;
/**
* H5Tencode converts a data type description into binary form in a buffer.
@@ -12182,36 +12622,38 @@ public class H5 implements java.io.Serializable {
* @param obj_id
* IN: Identifier of the object to be encoded.
* @param buf
- * OUT: Buffer for the object to be encoded into. If the provided buffer is NULL, only the size of buffer
- * needed is returned.
+ * OUT: Buffer for the object to be encoded into. If the provided buffer is NULL, only the size
+ * of buffer needed is returned.
* @param nalloc
* IN: The size of the allocated buffer.
*
* @return the size needed for the allocated buffer.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
**/
- public synchronized static native int H5Tencode(long obj_id, byte[] buf, long nalloc) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Tencode(long obj_id, byte[] buf, long nalloc)
+ throws HDF5LibraryException, NullPointerException;
// /**
- // * H5Tencode converts a data type description into binary form in a buffer.
- // *
- // * @param obj_id IN: Identifier of the object to be encoded.
- // *
- // * @return the buffer for the object to be encoded into.
- // *
- // * @exception HDF5LibraryException - Error from the HDF-5 Library.
- // **/
+ // * H5Tencode converts a data type description into binary form in a buffer.
+ // *
+ // * @param obj_id
+ // * IN: Identifier of the object to be encoded.
+ // *
+ // * @return the buffer for the object to be encoded into.
+ // *
+ // * @exception HDF5LibraryException
+ // * Error from the HDF-5 Library.
+ // **/
// public synchronized static native byte[] H5Tencode(int obj_id)
// throws HDF5LibraryException;
/**
- * H5Tenum_create creates a new enumeration datatype based on the specified base datatype, parent_id, which must be
- * an integer type.
+ * H5Tenum_create creates a new enumeration datatype based on the specified base datatype, parent_id,
+ * which must be an integer type.
*
* @param base_id
* IN: Identifier of the parent datatype to release.
@@ -12219,9 +12661,10 @@ public class H5 implements java.io.Serializable {
* @return the datatype identifier for the new enumeration datatype
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Tenum_create(long base_id) throws HDF5LibraryException {
+ public static long H5Tenum_create(long base_id) throws HDF5LibraryException
+ {
long id = _H5Tenum_create(base_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Tenum_create add {}", id);
@@ -12244,12 +12687,12 @@ public class H5 implements java.io.Serializable {
* IN: The value of the member, data of the correct type
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native void H5Tenum_insert(long type, String name, byte[] value)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Tenum_insert inserts a new enumeration datatype member into an enumeration datatype.
@@ -12264,12 +12707,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static int H5Tenum_insert(long type, String name, int[] value) throws HDF5LibraryException,
- NullPointerException {
+ public static int H5Tenum_insert(long type, String name, int[] value)
+ throws HDF5LibraryException, NullPointerException
+ {
return H5Tenum_insert_int(type, name, value);
}
@@ -12286,21 +12730,23 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static int H5Tenum_insert(long type, String name, int value) throws HDF5LibraryException,
- NullPointerException {
- int[] val = { value };
+ public static int H5Tenum_insert(long type, String name, int value)
+ throws HDF5LibraryException, NullPointerException
+ {
+ int[] val = {value};
return H5Tenum_insert_int(type, name, val);
}
private synchronized static native int H5Tenum_insert_int(long type, String name, int[] value)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Tenum_nameof finds the symbol name that corresponds to the specified value of the enumeration datatype type.
+ * H5Tenum_nameof finds the symbol name that corresponds to the specified value of the enumeration
+ * datatype type.
*
* @param type
* IN: Identifier of datatype.
@@ -12312,17 +12758,18 @@ public class H5 implements java.io.Serializable {
* @return the symbol name.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - value is null.
+ * value is null.
**/
public synchronized static native String H5Tenum_nameof(long type, byte[] value, long size)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
// int H5Tenum_nameof(int type, Pointer value, Buffer name/* out */, long size);
/**
- * H5Tenum_nameof finds the symbol name that corresponds to the specified value of the enumeration datatype type.
+ * H5Tenum_nameof finds the symbol name that corresponds to the specified value of the enumeration
+ * datatype type.
*
* @param type
* IN: Identifier of datatype.
@@ -12336,20 +12783,22 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static int H5Tenum_nameof(long type, int[] value, String[] name, int size) throws HDF5LibraryException,
- NullPointerException {
+ public static int H5Tenum_nameof(long type, int[] value, String[] name, int size)
+ throws HDF5LibraryException, NullPointerException
+ {
return H5Tenum_nameof_int(type, value, name, size);
}
private synchronized static native int H5Tenum_nameof_int(long type, int[] value, String[] name, int size)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Tenum_valueof finds the value that corresponds to the specified name of the enumeration datatype type.
+ * H5Tenum_valueof finds the value that corresponds to the specified name of the enumeration datatype
+ * type.
*
* @param type
* IN: Identifier of datatype.
@@ -12359,13 +12808,14 @@ public class H5 implements java.io.Serializable {
* OUT: The value of the member
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Tenum_valueof(long type, String name, byte[] value)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Tenum_valueof finds the value that corresponds to the specified name of the enumeration datatype type.
+ * H5Tenum_valueof finds the value that corresponds to the specified name of the enumeration datatype
+ * type.
*
* @param type
* IN: Identifier of datatype.
@@ -12377,17 +12827,18 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static int H5Tenum_valueof(long type, String name, int[] value) throws HDF5LibraryException,
- NullPointerException {
+ public static int H5Tenum_valueof(long type, String name, int[] value)
+ throws HDF5LibraryException, NullPointerException
+ {
return H5Tenum_valueof_int(type, name, value);
}
private synchronized static native int H5Tenum_valueof_int(long type, String name, int[] value)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Tequal determines whether two datatype identifiers refer to the same datatype.
@@ -12400,9 +12851,10 @@ public class H5 implements java.io.Serializable {
* @return true if the datatype identifiers refer to the same datatype, else false.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native boolean H5Tequal(long type_id1, long type_id2) throws HDF5LibraryException;
+ public synchronized static native boolean H5Tequal(long type_id1, long type_id2)
+ throws HDF5LibraryException;
/**
* H5Tget_array_dims returns the sizes of the dimensions of the specified array datatype object.
@@ -12415,11 +12867,13 @@ public class H5 implements java.io.Serializable {
* @return the non-negative number of dimensions of the array type
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - dims is null.
+ * dims is null.
**/
- public static int H5Tget_array_dims(long type_id, long[] dims) throws HDF5LibraryException, NullPointerException {
+ public static int H5Tget_array_dims(long type_id, long[] dims)
+ throws HDF5LibraryException, NullPointerException
+ {
return H5Tget_array_dims2(type_id, dims);
}
@@ -12434,12 +12888,12 @@ public class H5 implements java.io.Serializable {
* @return the non-negative number of dimensions of the array type
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - dims is null.
+ * dims is null.
**/
- public synchronized static native int H5Tget_array_dims2(long type_id, long[] dims) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Tget_array_dims2(long type_id, long[] dims)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Tget_array_ndims returns the rank, the number of dimensions, of an array datatype object.
@@ -12450,7 +12904,7 @@ public class H5 implements java.io.Serializable {
* @return the rank of the array
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tget_array_ndims(long type_id) throws HDF5LibraryException;
@@ -12463,7 +12917,7 @@ public class H5 implements java.io.Serializable {
* @return datatype class identifier if successful; otherwise H5T_NO_CLASS(-1).
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tget_class(long type_id) throws HDF5LibraryException;
@@ -12476,7 +12930,8 @@ public class H5 implements java.io.Serializable {
* @return class name if successful; otherwise H5T_NO_CLASS.
*
**/
- public static String H5Tget_class_name(long class_id) {
+ public static String H5Tget_class_name(long class_id)
+ {
String retValue = null;
if (HDF5Constants.H5T_INTEGER == class_id) /* integer types */
retValue = "H5T_INTEGER";
@@ -12492,7 +12947,7 @@ public class H5 implements java.io.Serializable {
retValue = "H5T_OPAQUE";
else if (HDF5Constants.H5T_COMPOUND == class_id) /* compound types */
retValue = "H5T_COMPOUND";
- else if (HDF5Constants.H5T_REFERENCE == class_id)/* reference types */
+ else if (HDF5Constants.H5T_REFERENCE == class_id) /* reference types */
retValue = "H5T_REFERENCE";
else if (HDF5Constants.H5T_ENUM == class_id) /* enumeration types */
retValue = "H5T_ENUM";
@@ -12507,8 +12962,8 @@ public class H5 implements java.io.Serializable {
}
/**
- * H5Tget_create_plist returns a property list identifier for the datatype creation property list associated with
- * the datatype specified by type_id.
+ * H5Tget_create_plist returns a property list identifier for the datatype creation property list
+ * associated with the datatype specified by type_id.
*
* @param type_id
* IN: Identifier of datatype.
@@ -12516,9 +12971,10 @@ public class H5 implements java.io.Serializable {
* @return a datatype property list identifier.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Tget_create_plist(long type_id) throws HDF5LibraryException {
+ public static long H5Tget_create_plist(long type_id) throws HDF5LibraryException
+ {
long id = _H5Tget_create_plist(type_id);
if (id > 0) {
log.trace("OPEN_IDS: _H5Tget_create_plist add {}", id);
@@ -12539,7 +12995,7 @@ public class H5 implements java.io.Serializable {
* @return a valid character set type if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tget_cset(long type_id) throws HDF5LibraryException;
@@ -12554,7 +13010,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tset_cset(long type_id, int cset) throws HDF5LibraryException;
@@ -12567,7 +13023,7 @@ public class H5 implements java.io.Serializable {
* @return the bias if successful; otherwise 0.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tget_ebias(long type_id) throws HDF5LibraryException;
@@ -12582,10 +13038,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static int H5Tset_ebias(long type_id, int ebias) throws HDF5LibraryException {
- H5Tset_ebias(type_id, (long) ebias);
+ public static int H5Tset_ebias(long type_id, int ebias) throws HDF5LibraryException
+ {
+ H5Tset_ebias(type_id, (long)ebias);
return 0;
}
@@ -12598,7 +13055,7 @@ public class H5 implements java.io.Serializable {
* @return the bias
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Tget_ebias_long(long type_id) throws HDF5LibraryException;
@@ -12611,12 +13068,13 @@ public class H5 implements java.io.Serializable {
* IN: Exponent bias value.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Tset_ebias(long type_id, long ebias) throws HDF5LibraryException;
/**
- * H5Tget_fields retrieves information about the locations of the various bit fields of a floating point datatype.
+ * H5Tget_fields retrieves information about the locations of the various bit fields of a floating point
+ * datatype.
*
* @param type_id
* IN: Identifier of datatype to query.
@@ -12631,17 +13089,18 @@ public class H5 implements java.io.Serializable {
* </ul>
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - fields is null.
+ * fields is null.
* @exception IllegalArgumentException
- * - fields array is invalid.
+ * fields array is invalid.
**/
- public synchronized static native void H5Tget_fields(long type_id, long[] fields) throws HDF5LibraryException,
- NullPointerException, IllegalArgumentException;
+ public synchronized static native void H5Tget_fields(long type_id, long[] fields)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
- * H5Tget_fields retrieves information about the locations of the various bit fields of a floating point datatype.
+ * H5Tget_fields retrieves information about the locations of the various bit fields of a floating point
+ * datatype.
*
* @param type_id
* IN: Identifier of datatype to query.
@@ -12659,19 +13118,20 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - fields is null.
+ * fields is null.
* @exception IllegalArgumentException
- * - fields array is invalid.
+ * fields array is invalid.
**/
- public static int H5Tget_fields(long type_id, int[] fields) throws HDF5LibraryException, NullPointerException,
- IllegalArgumentException {
+ public static int H5Tget_fields(long type_id, int[] fields)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException
+ {
return H5Tget_fields_int(type_id, fields);
}
- private synchronized static native int H5Tget_fields_int(long type_id, int[] fields) throws HDF5LibraryException,
- NullPointerException, IllegalArgumentException;
+ private synchronized static native int H5Tget_fields_int(long type_id, int[] fields)
+ throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
* H5Tset_fields sets the locations and sizes of the various floating point bit fields.
@@ -12690,10 +13150,10 @@ public class H5 implements java.io.Serializable {
* IN: Size of mantissa in bits.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Tset_fields(long type_id, long spos, long epos, long esize, long mpos,
- long msize) throws HDF5LibraryException;
+ public synchronized static native void H5Tset_fields(long type_id, long spos, long epos, long esize,
+ long mpos, long msize) throws HDF5LibraryException;
/**
* H5Tset_fields sets the locations and sizes of the various floating point bit fields.
@@ -12714,11 +13174,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public static int H5Tset_fields(long type_id, int spos, int epos, int esize, int mpos, int msize)
- throws HDF5LibraryException {
- H5Tset_fields(type_id, (long) spos, (long) epos, (long) esize, (long) mpos, (long) msize);
+ throws HDF5LibraryException
+ {
+ H5Tset_fields(type_id, (long)spos, (long)epos, (long)esize, (long)mpos, (long)msize);
return 0;
}
@@ -12731,14 +13192,14 @@ public class H5 implements java.io.Serializable {
* @return a valid padding type if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tget_inpad(long type_id) throws HDF5LibraryException;
/**
- * If any internal bits of a floating point type are unused (that is, those significant bits which are not part of
- * the sign, exponent, or mantissa), then H5Tset_inpad will be filled according to the value of the padding value
- * property inpad.
+ * If any internal bits of a floating point type are unused (that is, those significant bits which are not
+ * part of the sign, exponent, or mantissa), then H5Tset_inpad will be filled according to the value of
+ * the padding value property inpad.
*
* @param type_id
* IN: Identifier of datatype to modify.
@@ -12748,7 +13209,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tset_inpad(long type_id, int inpad) throws HDF5LibraryException;
@@ -12763,9 +13224,10 @@ public class H5 implements java.io.Serializable {
* @return the class of the datatype of the field if successful;
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Tget_member_class(long type_id, int membno) throws HDF5LibraryException;
+ public synchronized static native int H5Tget_member_class(long type_id, int membno)
+ throws HDF5LibraryException;
/**
* H5Tget_member_index retrieves the index of a field of a compound datatype.
@@ -12778,12 +13240,14 @@ public class H5 implements java.io.Serializable {
* @return if field is defined, the index; else negative.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Tget_member_index(long type_id, String field_name) throws HDF5LibraryException;
+ public synchronized static native int H5Tget_member_index(long type_id, String field_name)
+ throws HDF5LibraryException;
/**
- * H5Tget_member_name retrieves the name of a field of a compound datatype or an element of an enumeration datatype.
+ * H5Tget_member_name retrieves the name of a field of a compound datatype or an element of an enumeration
+ * datatype.
*
* @param type_id
* IN: Identifier of datatype to query.
@@ -12793,13 +13257,15 @@ public class H5 implements java.io.Serializable {
* @return a valid pointer to the name if successful; otherwise null.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native String H5Tget_member_name(long type_id, int field_idx) throws HDF5LibraryException;
+ public synchronized static native String H5Tget_member_name(long type_id, int field_idx)
+ throws HDF5LibraryException;
/**
- * H5Tget_member_offset returns the byte offset of the specified member of the compound datatype. This is the byte
- * offset in the HDF-5 file/library, NOT the offset of any Java object which might be mapped to this data item.
+ * H5Tget_member_offset returns the byte offset of the specified member of the compound datatype. This is
+ * the byte offset in the HDF-5 file/library, NOT the offset of any Java object which might be mapped to
+ * this data item.
*
* @param type_id
* IN: Identifier of datatype to query.
@@ -12821,9 +13287,10 @@ public class H5 implements java.io.Serializable {
* @return the identifier of a copy of the datatype of the field if successful;
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Tget_member_type(long type_id, int field_idx) throws HDF5LibraryException {
+ public static long H5Tget_member_type(long type_id, int field_idx) throws HDF5LibraryException
+ {
long id = _H5Tget_member_type(type_id, field_idx);
if (id > 0) {
log.trace("OPEN_IDS: H5Tget_member_type add {}", id);
@@ -12834,7 +13301,7 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Tget_member_type(long type_id, int field_idx)
- throws HDF5LibraryException;
+ throws HDF5LibraryException;
/**
* H5Tget_member_value returns the value of the enumeration datatype member memb_no.
@@ -12847,12 +13314,12 @@ public class H5 implements java.io.Serializable {
* OUT: The value of the member
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - value is null.
+ * value is null.
**/
public synchronized static native void H5Tget_member_value(long type_id, int membno, byte[] value)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Tget_member_value returns the value of the enumeration datatype member memb_no.
@@ -12867,30 +13334,33 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - value is null.
+ * value is null.
**/
- public static int H5Tget_member_value(long type_id, int membno, int[] value) throws HDF5LibraryException,
- NullPointerException {
+ public static int H5Tget_member_value(long type_id, int membno, int[] value)
+ throws HDF5LibraryException, NullPointerException
+ {
return H5Tget_member_value_int(type_id, membno, value);
}
private synchronized static native int H5Tget_member_value_int(long type_id, int membno, int[] value)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Tget_native_type returns the equivalent native datatype for the datatype specified in type_id.
*
* @param type_id
- * IN: Identifier of datatype to query. Direction of search is assumed to be in ascending order.
+ * IN: Identifier of datatype to query. Direction of search is assumed to be in ascending
+ * order.
*
* @return the native datatype identifier for the specified dataset datatype.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static long H5Tget_native_type(long type_id) throws HDF5LibraryException {
+ public synchronized static long H5Tget_native_type(long type_id) throws HDF5LibraryException
+ {
return H5Tget_native_type(type_id, HDF5Constants.H5T_DIR_ASCEND);
}
@@ -12905,9 +13375,10 @@ public class H5 implements java.io.Serializable {
* @return the native datatype identifier for the specified dataset datatype.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Tget_native_type(long type_id, int direction) throws HDF5LibraryException {
+ public static long H5Tget_native_type(long type_id, int direction) throws HDF5LibraryException
+ {
long id = _H5Tget_native_type(type_id, direction);
if (id > 0) {
log.trace("OPEN_IDS: H5Tget_native_type add {}", id);
@@ -12917,7 +13388,8 @@ public class H5 implements java.io.Serializable {
return id;
}
- private synchronized static native long _H5Tget_native_type(long tid, int direction) throws HDF5LibraryException;
+ private synchronized static native long _H5Tget_native_type(long tid, int direction)
+ throws HDF5LibraryException;
/**
* H5Tget_nmembers retrieves the number of fields a compound datatype has.
@@ -12928,7 +13400,7 @@ public class H5 implements java.io.Serializable {
* @return number of members datatype has if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tget_nmembers(long type_id) throws HDF5LibraryException;
@@ -12941,7 +13413,7 @@ public class H5 implements java.io.Serializable {
* @return a valid normalization type if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tget_norm(long type_id) throws HDF5LibraryException;
@@ -12956,7 +13428,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tset_norm(long type_id, int norm) throws HDF5LibraryException;
@@ -12969,7 +13441,7 @@ public class H5 implements java.io.Serializable {
* @return a positive offset value if successful; otherwise 0.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tget_offset(long type_id) throws HDF5LibraryException;
@@ -12984,10 +13456,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static int H5Tset_offset(long type_id, int offset) throws HDF5LibraryException {
- H5Tset_offset(type_id, (long) offset);
+ public static int H5Tset_offset(long type_id, int offset) throws HDF5LibraryException
+ {
+ H5Tset_offset(type_id, (long)offset);
return 0;
}
@@ -13000,9 +13473,10 @@ public class H5 implements java.io.Serializable {
* IN: Offset of first significant bit.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Tset_offset(long type_id, long offset) throws HDF5LibraryException;
+ public synchronized static native void H5Tset_offset(long type_id, long offset)
+ throws HDF5LibraryException;
/**
* H5Tget_order returns the byte order of an atomic datatype.
@@ -13013,7 +13487,7 @@ public class H5 implements java.io.Serializable {
* @return a byte order constant if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tget_order(long type_id) throws HDF5LibraryException;
@@ -13028,7 +13502,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tset_order(long type_id, int order) throws HDF5LibraryException;
@@ -13048,12 +13522,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - pad is null.
+ * pad is null.
**/
- public synchronized static native int H5Tget_pad(long type_id, int[] pad) throws HDF5LibraryException,
- NullPointerException;
+ public synchronized static native int H5Tget_pad(long type_id, int[] pad)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Tset_pad sets the least and most-significant bits padding types.
@@ -13068,9 +13542,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native int H5Tset_pad(long type_id, int lsb, int msb) throws HDF5LibraryException;
+ public synchronized static native int H5Tset_pad(long type_id, int lsb, int msb)
+ throws HDF5LibraryException;
/**
* H5Tget_precision returns the precision of an atomic datatype.
@@ -13081,7 +13556,7 @@ public class H5 implements java.io.Serializable {
* @return the number of significant bits if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tget_precision(long type_id) throws HDF5LibraryException;
@@ -13096,10 +13571,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static int H5Tset_precision(long type_id, int precision) throws HDF5LibraryException {
- H5Tset_precision(type_id, (long) precision);
+ public static int H5Tset_precision(long type_id, int precision) throws HDF5LibraryException
+ {
+ H5Tset_precision(type_id, (long)precision);
return 0;
}
@@ -13112,7 +13588,7 @@ public class H5 implements java.io.Serializable {
* @return the number of significant bits if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Tget_precision_long(long type_id) throws HDF5LibraryException;
@@ -13125,9 +13601,10 @@ public class H5 implements java.io.Serializable {
* IN: Number of bits of precision for datatype.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5Tset_precision(long type_id, long precision) throws HDF5LibraryException;
+ public synchronized static native void H5Tset_precision(long type_id, long precision)
+ throws HDF5LibraryException;
/**
* H5Tget_sign retrieves the sign type for an integer type.
@@ -13138,7 +13615,7 @@ public class H5 implements java.io.Serializable {
* @return a valid sign type if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tget_sign(long type_id) throws HDF5LibraryException;
@@ -13153,7 +13630,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tset_sign(long type_id, int sign) throws HDF5LibraryException;
@@ -13166,13 +13643,13 @@ public class H5 implements java.io.Serializable {
* @return the size of the datatype in bytes
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5Tget_size(long type_id) throws HDF5LibraryException;
/**
- * H5Tset_size sets the total size in bytes, size, for an atomic datatype (this operation is not permitted on
- * compound datatypes).
+ * H5Tset_size sets the total size in bytes, size, for an atomic datatype (this operation is not permitted
+ * on compound datatypes).
*
* @param type_id
* IN: Identifier of datatype to change size.
@@ -13182,7 +13659,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tset_size(long type_id, long size) throws HDF5LibraryException;
@@ -13195,7 +13672,7 @@ public class H5 implements java.io.Serializable {
* @return a valid string padding type if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tget_strpad(long type_id) throws HDF5LibraryException;
@@ -13210,7 +13687,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tset_strpad(long type_id, int strpad) throws HDF5LibraryException;
@@ -13223,9 +13700,10 @@ public class H5 implements java.io.Serializable {
* @return the parent type
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Tget_super(long type) throws HDF5LibraryException {
+ public static long H5Tget_super(long type) throws HDF5LibraryException
+ {
long id = _H5Tget_super(type);
if (id > 0) {
log.trace("OPEN_IDS: H5Tget_super add {}", id);
@@ -13246,7 +13724,7 @@ public class H5 implements java.io.Serializable {
* @return the tag
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native String H5Tget_tag(long type) throws HDF5LibraryException;
@@ -13261,7 +13739,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tset_tag(long type, String tag) throws HDF5LibraryException;
@@ -13280,12 +13758,12 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
public synchronized static native int H5Tinsert(long type_id, String name, long offset, long field_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Tis_variable_str determines whether the datatype identified in type_id is a variable-length string.
@@ -13296,12 +13774,13 @@ public class H5 implements java.io.Serializable {
* @return true if type_id is a variable-length string.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native boolean H5Tis_variable_str(long type_id) throws HDF5LibraryException;
/**
- * H5Tlock locks the datatype specified by the type_id identifier, making it read-only and non-destrucible.
+ * H5Tlock locks the datatype specified by the type_id identifier, making it read-only and
+ * non-destrucible.
*
* @param type_id
* IN: Identifier of datatype to lock.
@@ -13309,12 +13788,13 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tlock(long type_id) throws HDF5LibraryException;
/**
- * H5Topen opens a named datatype at the location specified by loc_id and return an identifier for the datatype.
+ * H5Topen opens a named datatype at the location specified by loc_id and return an identifier for the
+ * datatype.
*
* @param loc_id
* IN: A file, group, or datatype identifier.
@@ -13326,12 +13806,13 @@ public class H5 implements java.io.Serializable {
* @return a named datatype identifier if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - name is null.
+ * name is null.
**/
- public static long H5Topen(long loc_id, String name, long tapl_id) throws HDF5LibraryException,
- NullPointerException {
+ public static long H5Topen(long loc_id, String name, long tapl_id)
+ throws HDF5LibraryException, NullPointerException
+ {
long id = _H5Topen2(loc_id, name, tapl_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Topen add {}", id);
@@ -13342,14 +13823,12 @@ public class H5 implements java.io.Serializable {
}
private synchronized static native long _H5Topen2(long loc_id, String name, long tapl_id)
- throws HDF5LibraryException, NullPointerException;
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Tpack recursively removes padding from within a compound datatype to make it more efficient (space-wise) to
- * store that data.
- * <P>
- * <b>WARNING:</b> This call only affects the C-data, even if it succeeds, there may be no visible effect on Java
- * objects.
+ * H5Tpack recursively removes padding from within a compound datatype to make it more efficient
+ * (space-wise) to store that data. <P> <b>WARNING:</b> This call only affects the C-data, even if it
+ * succeeds, there may be no visible effect on Java objects.
*
* @param type_id
* IN: Identifier of datatype to modify.
@@ -13357,7 +13836,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Tpack(long type_id) throws HDF5LibraryException;
@@ -13374,12 +13853,13 @@ public class H5 implements java.io.Serializable {
* Buffer with data to be reclaimed.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
* @exception NullPointerException
- * - buf is null.
+ * buf is null.
**/
- public synchronized static native void H5Treclaim(long type_id, long space_id, long xfer_plist_id, byte[] buf)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native void H5Treclaim(long type_id, long space_id, long xfer_plist_id,
+ byte[] buf)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Tvlen_create creates a new variable-length (VL) dataype.
@@ -13390,9 +13870,10 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public static long H5Tvlen_create(long base_id) throws HDF5LibraryException {
+ public static long H5Tvlen_create(long base_id) throws HDF5LibraryException
+ {
long id = _H5Tvlen_create(base_id);
if (id > 0) {
log.trace("OPEN_IDS: H5Tvlen_create add {}", id);
@@ -13412,7 +13893,7 @@ public class H5 implements java.io.Serializable {
* IN: Identifier of the committed datatype to be flushed.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Tflush(long dtype_id) throws HDF5LibraryException;
@@ -13426,7 +13907,7 @@ public class H5 implements java.io.Serializable {
* IN: Identifier of the committed datatype to be refreshed.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5Trefresh(long dtype_id) throws HDF5LibraryException;
@@ -13438,9 +13919,8 @@ public class H5 implements java.io.Serializable {
// H5T_conv_t func)
// throws HDF5LibraryException, NullPointerException;
- // public synchronized static native int H5Tunregister(H5T_pers_t pers, String name, int src_id, int dst_id,
- // H5T_conv_t func)
- // throws HDF5LibraryException, NullPointerException;
+ // public synchronized static native int H5Tunregister(H5T_pers_t pers, String name, int src_id, int
+ // dst_id, H5T_conv_t func) throws HDF5LibraryException, NullPointerException;
// ////////////////////////////////////////////////////////////
// //
@@ -13450,7 +13930,8 @@ public class H5 implements java.io.Serializable {
/// VOL Connector Functionality
/**
- * H5VLregister_connector_by_name registers a new VOL connector as a member of the virtual object layer class.
+ * H5VLregister_connector_by_name registers a new VOL connector as a member of the virtual object layer
+ * class.
*
* @param connector_name
* IN: name of the connector.
@@ -13461,11 +13942,13 @@ public class H5 implements java.io.Serializable {
* @return a VOL connector ID
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native long H5VLregister_connector_by_name(String connector_name, long vipl_id) throws HDF5LibraryException;
+ public synchronized static native long H5VLregister_connector_by_name(String connector_name, long vipl_id)
+ throws HDF5LibraryException;
/**
- * H5VLregister_connector_by_value registers a new VOL connector as a member of the virtual object layer class.
+ * H5VLregister_connector_by_value registers a new VOL connector as a member of the virtual object layer
+ * class.
*
* @param connector_value
* IN: value of the connector.
@@ -13476,9 +13959,10 @@ public class H5 implements java.io.Serializable {
* @return a VOL connector ID
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native long H5VLregister_connector_by_value(int connector_value, long vipl_id) throws HDF5LibraryException;
+ public synchronized static native long H5VLregister_connector_by_value(int connector_value, long vipl_id)
+ throws HDF5LibraryException;
/**
* H5VLis_connector_registered_by_name tests whether a VOL class has been registered.
*
@@ -13488,9 +13972,10 @@ public class H5 implements java.io.Serializable {
* @return true if a VOL connector with that name has been registered
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native boolean H5VLis_connector_registered_by_name(String name) throws HDF5LibraryException;
+ public synchronized static native boolean H5VLis_connector_registered_by_name(String name)
+ throws HDF5LibraryException;
/**
* H5VLis_connector_registered_by_value tests whether a VOL class has been registered.
*
@@ -13500,9 +13985,10 @@ public class H5 implements java.io.Serializable {
* @return true if a VOL connector with that value has been registered
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native boolean H5VLis_connector_registered_by_value(int connector_value) throws HDF5LibraryException;
+ public synchronized static native boolean H5VLis_connector_registered_by_value(int connector_value)
+ throws HDF5LibraryException;
/**
* H5VLget_connector_id retrieves the ID for a registered VOL connector for a given object.
*
@@ -13512,7 +13998,7 @@ public class H5 implements java.io.Serializable {
* @return a VOL connector ID
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native long H5VLget_connector_id(long object_id) throws HDF5LibraryException;
/**
@@ -13524,9 +14010,10 @@ public class H5 implements java.io.Serializable {
* @return a VOL connector ID
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native long H5VLget_connector_id_by_name(String name) throws HDF5LibraryException;
+ public synchronized static native long H5VLget_connector_id_by_name(String name)
+ throws HDF5LibraryException;
/**
* H5VLget_connector_id_by_value retrieves the ID for a registered VOL connector.
*
@@ -13536,12 +14023,13 @@ public class H5 implements java.io.Serializable {
* @return a VOL connector ID
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native long H5VLget_connector_id_by_value(int connector_value) throws HDF5LibraryException;
+ public synchronized static native long H5VLget_connector_id_by_value(int connector_value)
+ throws HDF5LibraryException;
/**
* H5VLget_connector_name returns the connector name for the VOL associated with the
- * object or file ID.
+ * object or file ID.
*
* @param object_id
* IN: Identifier of the object.
@@ -13549,9 +14037,10 @@ public class H5 implements java.io.Serializable {
* @return the connector name
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native String H5VLget_connector_name(long object_id) throws HDF5LibraryException;
+ public synchronized static native String H5VLget_connector_name(long object_id)
+ throws HDF5LibraryException;
/**
* H5VLclose closes a VOL connector ID.
*
@@ -13559,7 +14048,7 @@ public class H5 implements java.io.Serializable {
* IN: Identifier of the connector.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native void H5VLclose(long connector_id) throws HDF5LibraryException;
/**
@@ -13569,14 +14058,14 @@ public class H5 implements java.io.Serializable {
* IN: Identifier of the connector.
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
- public synchronized static native void H5VLunregister_connector(long connector_id) throws HDF5LibraryException;
+ public synchronized static native void H5VLunregister_connector(long connector_id)
+ throws HDF5LibraryException;
// /////// unimplemented ////////
// hid_t H5VLregister_connector(const H5VL_class_t *cls, hid_t vipl_id);
-
// ////////////////////////////////////////////////////////////
// //
// H5Z: Filter Interface Functions //
@@ -13592,7 +14081,7 @@ public class H5 implements java.io.Serializable {
* @return a non-negative(TRUE/FALSE) value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Zfilter_avail(int filter) throws HDF5LibraryException;
@@ -13605,7 +14094,7 @@ public class H5 implements java.io.Serializable {
* @return the filter information flags
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Zget_filter_info(int filter) throws HDF5LibraryException;
@@ -13618,13 +14107,11 @@ public class H5 implements java.io.Serializable {
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
+ * Error from the HDF-5 Library.
**/
public synchronized static native int H5Zunregister(int filter) throws HDF5LibraryException;
// /////// unimplemented ////////
// herr_t H5Zregister(const void *cls);
-
}
-
diff --git a/java/src/hdf/hdf5lib/HDF5Constants.java b/java/src/hdf/hdf5lib/HDF5Constants.java
index 4125907..cbdf463 100644
--- a/java/src/hdf/hdf5lib/HDF5Constants.java
+++ b/java/src/hdf/hdf5lib/HDF5Constants.java
@@ -11,7 +11,6 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
package hdf.hdf5lib;
import hdf.hdf5lib.structs.H5O_token_t;
@@ -27,15 +26,13 @@ import hdf.hdf5lib.structs.H5O_token_t;
* <b>See also:</b> hdf.hdf5lib.HDF5Library
*/
public class HDF5Constants {
- static {
- H5.loadH5Lib();
- }
+ static { H5.loadH5Lib(); }
// /////////////////////////////////////////////////////////////////////////
// Get the HDF5 constants from the library //
// /////////////////////////////////////////////////////////////////////////
- //public static final long H5_QUARTER_HADDR_MAX = H5_QUARTER_HADDR_MAX();
+ // public static final long H5_QUARTER_HADDR_MAX = H5_QUARTER_HADDR_MAX();
/** Special parameters for szip compression */
public static final int H5_SZIP_MAX_PIXELS_PER_BLOCK = H5_SZIP_MAX_PIXELS_PER_BLOCK();
@@ -70,9 +67,11 @@ public class HDF5Constants {
/** */
public static final int H5AC_MAX_TRACE_FILE_NAME_LEN = H5AC_MAX_TRACE_FILE_NAME_LEN();
/** */
- public static final int H5AC_METADATA_WRITE_STRATEGY_PROCESS_ZERO_ONLY = H5AC_METADATA_WRITE_STRATEGY_PROCESS_ZERO_ONLY();
+ public static final int H5AC_METADATA_WRITE_STRATEGY_PROCESS_ZERO_ONLY =
+ H5AC_METADATA_WRITE_STRATEGY_PROCESS_ZERO_ONLY();
/** */
- public static final int H5AC_METADATA_WRITE_STRATEGY_DISTRIBUTED = H5AC_METADATA_WRITE_STRATEGY_DISTRIBUTED();
+ public static final int H5AC_METADATA_WRITE_STRATEGY_DISTRIBUTED =
+ H5AC_METADATA_WRITE_STRATEGY_DISTRIBUTED();
/** */
public static final int H5C_incr_off = H5C_incr_off();
/** */
@@ -681,22 +680,22 @@ public class HDF5Constants {
/** */
public static final long H5FD_MEM_DEFAULT_OHDR_SIZE = H5FD_MEM_DEFAULT_OHDR_SIZE();
-// public static final int H5G_DATASET = H5G_DATASET();
-// public static final int H5G_GROUP = H5G_GROUP();
-// public static final int H5G_LINK = H5G_LINK();
-// public static final int H5G_UDLINK = H5G_UDLINK();
-// public static final int H5G_LINK_ERROR = H5G_LINK_ERROR();
-// public static final int H5G_LINK_HARD = H5G_LINK_HARD();
-// public static final int H5G_LINK_SOFT = H5G_LINK_SOFT();
-// public static final int H5G_NLIBTYPES = H5G_NLIBTYPES();
-// public static final int H5G_NTYPES = H5G_NTYPES();
-// public static final int H5G_NUSERTYPES = H5G_NUSERTYPES();
-// public static final int H5G_RESERVED_5 = H5G_RESERVED_5();
-// public static final int H5G_RESERVED_6 = H5G_RESERVED_6();
-// public static final int H5G_RESERVED_7 = H5G_RESERVED_7();
-// public static final int H5G_SAME_LOC = H5G_SAME_LOC();
-// public static final int H5G_TYPE = H5G_TYPE();
-// public static final int H5G_UNKNOWN = H5G_UNKNOWN();
+ // public static final int H5G_DATASET = H5G_DATASET();
+ // public static final int H5G_GROUP = H5G_GROUP();
+ // public static final int H5G_LINK = H5G_LINK();
+ // public static final int H5G_UDLINK = H5G_UDLINK();
+ // public static final int H5G_LINK_ERROR = H5G_LINK_ERROR();
+ // public static final int H5G_LINK_HARD = H5G_LINK_HARD();
+ // public static final int H5G_LINK_SOFT = H5G_LINK_SOFT();
+ // public static final int H5G_NLIBTYPES = H5G_NLIBTYPES();
+ // public static final int H5G_NTYPES = H5G_NTYPES();
+ // public static final int H5G_NUSERTYPES = H5G_NUSERTYPES();
+ // public static final int H5G_RESERVED_5 = H5G_RESERVED_5();
+ // public static final int H5G_RESERVED_6 = H5G_RESERVED_6();
+ // public static final int H5G_RESERVED_7 = H5G_RESERVED_7();
+ // public static final int H5G_SAME_LOC = H5G_SAME_LOC();
+ // public static final int H5G_TYPE = H5G_TYPE();
+ // public static final int H5G_UNKNOWN = H5G_UNKNOWN();
/** */
public static final int H5G_STORAGE_TYPE_UNKNOWN = H5G_STORAGE_TYPE_UNKNOWN();
@@ -756,7 +755,7 @@ public class HDF5Constants {
/** */
public static final int H5O_COPY_SHALLOW_HIERARCHY_FLAG = H5O_COPY_SHALLOW_HIERARCHY_FLAG();
/** */
- public static final int H5O_COPY_EXPAND_SOFT_LINK_FLAG = H5O_COPY_EXPAND_SOFT_LINK_FLAG();
+ public static final int H5O_COPY_EXPAND_SOFT_LINK_FLAG = H5O_COPY_EXPAND_SOFT_LINK_FLAG();
/** */
public static final int H5O_COPY_EXPAND_EXT_LINK_FLAG = H5O_COPY_EXPAND_EXT_LINK_FLAG();
/** */
@@ -1438,23 +1437,35 @@ public class HDF5Constants {
public static final int H5Z_FILTER_SHUFFLE = H5Z_FILTER_SHUFFLE();
/** Filter IDs - szip compression */
public static final int H5Z_FILTER_SZIP = H5Z_FILTER_SZIP();
- /** Flags for filter definition (stored)
- * definition flag mask */
+ /**
+ * Flags for filter definition (stored)
+ * definition flag mask
+ */
public static final int H5Z_FLAG_DEFMASK = H5Z_FLAG_DEFMASK();
- /** Additional flags for filter invocation (not stored)
- * invocation flag mask */
+ /**
+ * Additional flags for filter invocation (not stored)
+ * invocation flag mask
+ */
public static final int H5Z_FLAG_INVMASK = H5Z_FLAG_INVMASK();
- /** Flags for filter definition (stored)
- * filter is mandatory */
+ /**
+ * Flags for filter definition (stored)
+ * filter is mandatory
+ */
public static final int H5Z_FLAG_MANDATORY = H5Z_FLAG_MANDATORY();
- /** Flags for filter definition (stored)
- * filter is optional */
+ /**
+ * Flags for filter definition (stored)
+ * filter is optional
+ */
public static final int H5Z_FLAG_OPTIONAL = H5Z_FLAG_OPTIONAL();
- /** Additional flags for filter invocation (not stored)
- * reverse direction; read */
+ /**
+ * Additional flags for filter invocation (not stored)
+ * reverse direction; read
+ */
public static final int H5Z_FLAG_REVERSE = H5Z_FLAG_REVERSE();
- /** Additional flags for filter invocation (not stored)
- * skip EDC filters for read */
+ /**
+ * Additional flags for filter invocation (not stored)
+ * skip EDC filters for read
+ */
public static final int H5Z_FLAG_SKIP_EDC = H5Z_FLAG_SKIP_EDC();
/** Symbol to remove all filters in H5Premove_filter */
public static final int H5Z_FILTER_ALL = H5Z_FILTER_ALL();
@@ -2953,5 +2964,4 @@ public class HDF5Constants {
private static native final int H5Z_SCALEOFFSET_USER_NPARMS();
private static native final int H5Z_FILTER_ALL();
-
}
diff --git a/java/src/hdf/hdf5lib/HDF5GroupInfo.java b/java/src/hdf/hdf5lib/HDF5GroupInfo.java
index 4c31af7..220cfb6 100644
--- a/java/src/hdf/hdf5lib/HDF5GroupInfo.java
+++ b/java/src/hdf/hdf5lib/HDF5GroupInfo.java
@@ -11,7 +11,6 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
package hdf.hdf5lib;
/**
@@ -41,14 +40,17 @@ public class HDF5GroupInfo {
long mtime;
int linklen;
- /** Container for the information reported about an HDF5 Object
- * from the H5Gget_obj_info() method */
- public HDF5GroupInfo() {
- fileno = new long[2];
- objno = new long[2];
- nlink = -1;
- type = -1;
- mtime = 0;
+ /**
+ * Container for the information reported about an HDF5 Object
+ * from the H5Gget_obj_info() method
+ */
+ public HDF5GroupInfo()
+ {
+ fileno = new long[2];
+ objno = new long[2];
+ nlink = -1;
+ type = -1;
+ mtime = 0;
linklen = 0;
}
@@ -68,84 +70,79 @@ public class HDF5GroupInfo {
* @param len
* Length of link
**/
- public void setGroupInfo(long[] fn, long[] on, int nl, int t, long mt,
- int len) {
- fileno = fn;
- objno = on;
- nlink = nl;
- type = t;
- mtime = mt;
+ public void setGroupInfo(long[] fn, long[] on, int nl, int t, long mt, int len)
+ {
+ fileno = fn;
+ objno = on;
+ nlink = nl;
+ type = t;
+ mtime = mt;
linklen = len;
}
/** Resets all the group information to defaults. */
- public void reset() {
+ public void reset()
+ {
fileno[0] = 0;
fileno[1] = 0;
- objno[0] = 0;
- objno[1] = 0;
- nlink = -1;
- type = -1;
- mtime = 0;
- linklen = 0;
+ objno[0] = 0;
+ objno[1] = 0;
+ nlink = -1;
+ type = -1;
+ mtime = 0;
+ linklen = 0;
}
- /** fileno accessors
+ /**
+ * fileno accessors
* @return the file number if successful
*/
- public long[] getFileno() {
- return fileno;
- }
+ public long[] getFileno() { return fileno; }
- /** accessors
+ /**
+ * accessors
* @return the object number if successful
*/
- public long[] getObjno() {
- return objno;
- }
+ public long[] getObjno() { return objno; }
- /** accessors
+ /**
+ * accessors
* @return type of group if successful
*/
- public int getType() {
- return type;
- }
+ public int getType() { return type; }
- /** accessors
+ /**
+ * accessors
* @return the number of links in the group if successful
*/
- public int getNlink() {
- return nlink;
- }
+ public int getNlink() { return nlink; }
- /** accessors
+ /**
+ * accessors
* @return the modified time value if successful
*/
- public long getMtime() {
- return mtime;
- }
+ public long getMtime() { return mtime; }
- /** accessors
+ /**
+ * accessors
* @return a length of link name if successful
*/
- public int getLinklen() {
- return linklen;
- }
+ public int getLinklen() { return linklen; }
/**
* The fileno and objno fields contain four values which uniquely identify
* an object among those HDF5 files.
*/
@Override
- public boolean equals(Object obj) {
+ public boolean equals(Object obj)
+ {
if (!(obj instanceof HDF5GroupInfo)) {
return false;
}
- HDF5GroupInfo target = (HDF5GroupInfo) obj;
- if ((fileno[0] == target.fileno[0]) && (fileno[1] == target.fileno[1])
- && (objno[0] == target.objno[0])
- && (objno[1] == target.objno[1])) {
+ HDF5GroupInfo target = (HDF5GroupInfo)obj;
+ if ((fileno[0] == target.fileno[0]) && (fileno[1] == target.fileno[1]) &&
+ (objno[0] == target.objno[0]) && (objno[1] == target.objno[1])) {
return true;
}
else {
@@ -158,9 +155,7 @@ public class HDF5GroupInfo {
*
* @return the object id
*/
- public long getOID() {
- return objno[0];
- }
+ public long getOID() { return objno[0]; }
/**
* /** Converts this object to a String representation.
@@ -168,9 +163,10 @@ public class HDF5GroupInfo {
* @return a string representation of this object
*/
@Override
- public String toString() {
+ public String toString()
+ {
String fileStr = "fileno=null";
- String objStr = "objno=null";
+ String objStr = "objno=null";
if (fileno != null) {
fileStr = "fileno[0]=" + fileno[0] + ",fileno[1]=" + fileno[1];
@@ -180,9 +176,7 @@ public class HDF5GroupInfo {
objStr = "objno[0]=" + objno[0] + ",objno[1]=" + objno[1];
}
- return getClass().getName() + "[" + fileStr + "," + objStr + ",type="
- + type + ",nlink=" + nlink + ",mtime=" + mtime + ",linklen="
- + linklen + "]";
+ return getClass().getName() + "[" + fileStr + "," + objStr + ",type=" + type + ",nlink=" + nlink +
+ ",mtime=" + mtime + ",linklen=" + linklen + "]";
}
-
}
diff --git a/java/src/hdf/hdf5lib/HDFArray.java b/java/src/hdf/hdf5lib/HDFArray.java
index 21e2b02..8525fb0 100644
--- a/java/src/hdf/hdf5lib/HDFArray.java
+++ b/java/src/hdf/hdf5lib/HDFArray.java
@@ -13,36 +13,34 @@
package hdf.hdf5lib;
+import java.util.Arrays;
+
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5JavaException;
-import java.util.Arrays;
/**
* This is a class for handling multidimensional arrays for HDF.
* <p>
* The purpose is to allow the storage and retrieval of arbitrary array types containing scientific data.
* <p>
- * The methods support the conversion of an array to and from Java to a one-dimensional array of bytes suitable for I/O
- * by the C library.
- * <p>
- * This class heavily uses the <a href="./hdf.hdf5lib.HDFNativeData.html">HDFNativeData</a> class to convert between
- * Java and C representations.
+ * The methods support the conversion of an array to and from Java to a one-dimensional array of bytes
+ * suitable for I/O by the C library. <p> This class heavily uses the <a
+ * href="./hdf.hdf5lib.HDFNativeData.html">HDFNativeData</a> class to convert between Java and C
+ * representations.
*/
public class HDFArray {
- private Object _theArray = null;
+ private Object _theArray = null;
private ArrayDescriptor _desc = null;
- private byte[] _barray = null;
+ private byte[] _barray = null;
// public HDFArray() {}
/**
- * The input must be a Java Array (possibly multidimensional) of primitive numbers or sub-classes of Number.
- * <p>
- * The input is analysed to determine the number of dimensions and size of each dimension, as well as the type of
- * the elements.
- * <p>
- * The description is saved in private variables, and used to convert data.
+ * The input must be a Java Array (possibly multidimensional) of primitive numbers or sub-classes of
+ * Number. <p> The input is analysed to determine the number of dimensions and size of each dimension, as
+ * well as the type of the elements. <p> The description is saved in private variables, and used to
+ * convert data.
*
* @param anArray
* The array object.
@@ -58,25 +56,26 @@ public class HDFArray {
if (tc.isArray() == false) {
/* exception: not an array */
HDF5JavaException ex = new HDF5JavaException("HDFArray: not an array?: ");
- throw (ex);
+ throw(ex);
}
_theArray = anArray;
- _desc = new ArrayDescriptor(_theArray);
+ _desc = new ArrayDescriptor(_theArray);
/* extra error checking -- probably not needed */
if (_desc == null) {
- HDF5JavaException ex = new HDF5JavaException("HDFArray: internal error: array description failed?: ");
- throw (ex);
+ HDF5JavaException ex =
+ new HDF5JavaException("HDFArray: internal error: array description failed?: ");
+ throw(ex);
}
}
/**
* Allocate a one-dimensional array of bytes sufficient to store the array.
*
- * @return A one-D array of bytes, filled with zeroes. The bytes are sufficient to hold the data of the Array passed
- * to the constructor.
+ * @return A one-D array of bytes, filled with zeroes. The bytes are sufficient to hold the data of the
+ * Array passed to the constructor.
* @exception hdf.hdf5lib.exceptions.HDF5JavaException
- * Allocation failed.
+ * Allocation failed.
*/
public byte[] emptyBytes() throws HDF5JavaException
@@ -84,14 +83,14 @@ public class HDFArray {
byte[] b = null;
if ((ArrayDescriptor.dims == 1) && (ArrayDescriptor.NT == 'B')) {
- b = (byte[]) _theArray;
+ b = (byte[])_theArray;
}
else {
b = new byte[ArrayDescriptor.totalSize];
}
if (b == null) {
HDF5JavaException ex = new HDF5JavaException("HDFArray: emptyBytes: allocation failed");
- throw (ex);
+ throw(ex);
}
return (b);
}
@@ -112,14 +111,14 @@ public class HDFArray {
if (_theArray == null) {
/* exception: not an array */
HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify not an array?: ");
- throw (ex);
+ throw(ex);
}
if (ArrayDescriptor.dims == 1) {
/* special case */
if (ArrayDescriptor.NT == 'B') {
/* really special case! */
- _barray = (byte[]) _theArray;
+ _barray = (byte[])_theArray;
return _barray;
}
else {
@@ -128,54 +127,56 @@ public class HDFArray {
byte[] therow;
if (ArrayDescriptor.NT == 'I') {
- therow = HDFNativeData.intToByte(0, ArrayDescriptor.dimlen[1], (int[]) _theArray);
+ therow = HDFNativeData.intToByte(0, ArrayDescriptor.dimlen[1], (int[])_theArray);
}
else if (ArrayDescriptor.NT == 'S') {
- therow = HDFNativeData.shortToByte(0, ArrayDescriptor.dimlen[1], (short[]) _theArray);
+ therow = HDFNativeData.shortToByte(0, ArrayDescriptor.dimlen[1], (short[])_theArray);
}
else if (ArrayDescriptor.NT == 'F') {
- therow = HDFNativeData.floatToByte(0, ArrayDescriptor.dimlen[1], (float[]) _theArray);
+ therow = HDFNativeData.floatToByte(0, ArrayDescriptor.dimlen[1], (float[])_theArray);
}
else if (ArrayDescriptor.NT == 'J') {
- therow = HDFNativeData.longToByte(0, ArrayDescriptor.dimlen[1], (long[]) _theArray);
+ therow = HDFNativeData.longToByte(0, ArrayDescriptor.dimlen[1], (long[])_theArray);
}
else if (ArrayDescriptor.NT == 'D') {
- therow = HDFNativeData.doubleToByte(0, ArrayDescriptor.dimlen[1], (double[]) _theArray);
+ therow =
+ HDFNativeData.doubleToByte(0, ArrayDescriptor.dimlen[1], (double[])_theArray);
}
else if (ArrayDescriptor.NT == 'L') {
if (ArrayDescriptor.className.equals("java.lang.Byte")) {
- therow = ByteObjToByte((Byte[]) _theArray);
+ therow = ByteObjToByte((Byte[])_theArray);
}
else if (ArrayDescriptor.className.equals("java.lang.Integer")) {
- therow = IntegerToByte((Integer[]) _theArray);
+ therow = IntegerToByte((Integer[])_theArray);
}
else if (ArrayDescriptor.className.equals("java.lang.Short")) {
- therow = ShortToByte((Short[]) _theArray);
+ therow = ShortToByte((Short[])_theArray);
}
else if (ArrayDescriptor.className.equals("java.lang.Float")) {
- therow = FloatObjToByte((Float[]) _theArray);
+ therow = FloatObjToByte((Float[])_theArray);
}
else if (ArrayDescriptor.className.equals("java.lang.Double")) {
- therow = DoubleObjToByte((Double[]) _theArray);
+ therow = DoubleObjToByte((Double[])_theArray);
}
else if (ArrayDescriptor.className.equals("java.lang.Long")) {
- therow = LongObjToByte((Long[]) _theArray);
+ therow = LongObjToByte((Long[])_theArray);
}
else {
HDF5JavaException ex = new HDF5JavaException("HDFArray: unknown type of Object?");
- throw (ex);
+ throw(ex);
}
}
else {
HDF5JavaException ex = new HDF5JavaException("HDFArray: unknown type of data?");
- throw (ex);
+ throw(ex);
}
- System.arraycopy(therow, 0, _barray, 0, (ArrayDescriptor.dimlen[1] * ArrayDescriptor.NTsize));
+ System.arraycopy(therow, 0, _barray, 0,
+ (ArrayDescriptor.dimlen[1] * ArrayDescriptor.NTsize));
return _barray;
}
catch (OutOfMemoryError err) {
HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify array too big?");
- throw (ex);
+ throw(ex);
}
}
}
@@ -185,15 +186,15 @@ public class HDFArray {
}
catch (OutOfMemoryError err) {
HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify array too big?");
- throw (ex);
+ throw(ex);
}
Object oo = _theArray;
- int n = 0; /* the current byte */
+ int n = 0; /* the current byte */
int index = 0;
int i;
while (n < ArrayDescriptor.totalSize) {
- oo = ArrayDescriptor.objs[0];
+ oo = ArrayDescriptor.objs[0];
index = n / ArrayDescriptor.bytetoindex[0];
index %= ArrayDescriptor.dimlen[0];
for (i = 0; i < (ArrayDescriptor.dims); i++) {
@@ -209,9 +210,9 @@ public class HDFArray {
if (index > (ArrayDescriptor.dimlen[i] - 1)) {
throw new java.lang.IndexOutOfBoundsException("HDFArray: byteify index OOB?");
}
- oo = java.lang.reflect.Array.get(oo, index);
+ oo = java.lang.reflect.Array.get(oo, index);
ArrayDescriptor.currentindex[i] = index;
- ArrayDescriptor.objs[i] = oo;
+ ArrayDescriptor.objs[i] = oo;
}
}
@@ -220,85 +221,90 @@ public class HDFArray {
try {
if (ArrayDescriptor.NT == 'J') {
arow = HDFNativeData.longToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- (long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ (long[])ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.NT == 'I') {
arow = HDFNativeData.intToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- (int[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ (int[])ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.NT == 'S') {
arow = HDFNativeData.shortToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- (short[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ (short[])ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.NT == 'B') {
- arow = (byte[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1];
+ arow = (byte[])ArrayDescriptor.objs[ArrayDescriptor.dims - 1];
}
else if (ArrayDescriptor.NT == 'F') {
/* 32 bit float */
arow = HDFNativeData.floatToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- (float[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ (float[])ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.NT == 'D') {
/* 64 bit float */
- arow = HDFNativeData.doubleToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- (double[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow =
+ HDFNativeData.doubleToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims],
+ (double[])ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.NT == 'L') {
if (ArrayDescriptor.className.equals("java.lang.Byte")) {
- arow = ByteObjToByte((Byte[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow = ByteObjToByte((Byte[])ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.className.equals("java.lang.Integer")) {
- arow = IntegerToByte((Integer[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow = IntegerToByte((Integer[])ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.className.equals("java.lang.Short")) {
- arow = ShortToByte((Short[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow = ShortToByte((Short[])ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.className.equals("java.lang.Float")) {
- arow = FloatObjToByte((Float[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow = FloatObjToByte((Float[])ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.className.equals("java.lang.Double")) {
- arow = DoubleObjToByte((Double[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow = DoubleObjToByte((Double[])ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.className.equals("java.lang.Long")) {
- arow = LongObjToByte((Long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow = LongObjToByte((Long[])ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else {
- HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify Object type not implemented?");
- throw (ex);
+ HDF5JavaException ex =
+ new HDF5JavaException("HDFArray: byteify Object type not implemented?");
+ throw(ex);
}
}
else {
- HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify unknown type not implemented?");
- throw (ex);
+ HDF5JavaException ex =
+ new HDF5JavaException("HDFArray: byteify unknown type not implemented?");
+ throw(ex);
}
System.arraycopy(arow, 0, _barray, n,
- (ArrayDescriptor.dimlen[ArrayDescriptor.dims] * ArrayDescriptor.NTsize));
+ (ArrayDescriptor.dimlen[ArrayDescriptor.dims] * ArrayDescriptor.NTsize));
n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
}
catch (OutOfMemoryError err) {
HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify array too big?");
- throw (ex);
+ throw(ex);
}
}
/* assert: the whole array is completed--currentindex should == len - 1 */
/* error checks */
if (n < ArrayDescriptor.totalSize) {
- throw new java.lang.InternalError(new String("HDFArray::byteify: Panic didn't complete all input data: n= "
- + n + " size = " + ArrayDescriptor.totalSize));
+ throw new java.lang.InternalError(
+ new String("HDFArray::byteify: Panic didn't complete all input data: n= " + n +
+ " size = " + ArrayDescriptor.totalSize));
}
for (i = 0; i < ArrayDescriptor.dims; i++) {
if (ArrayDescriptor.currentindex[i] != ArrayDescriptor.dimlen[i] - 1) {
- throw new java.lang.InternalError(new String(
- "Panic didn't complete all data: currentindex[" + i + "] = " + ArrayDescriptor.currentindex[i]
- + " (should be " + (ArrayDescriptor.dimlen[i] - 1) + " ?)"));
+ throw new java.lang.InternalError(new String("Panic didn't complete all data: currentindex[" +
+ i + "] = " + ArrayDescriptor.currentindex[i] +
+ " (should be " +
+ (ArrayDescriptor.dimlen[i] - 1) + " ?)"));
}
}
return _barray;
}
/**
- * Given a one-dimensional array of bytes representing numbers, convert it to a java array of the shape and size
- * passed to the constructor.
+ * Given a one-dimensional array of bytes representing numbers, convert it to a java array of the shape
+ * and size passed to the constructor.
*
* @param bytes
* The bytes to construct the Array.
@@ -312,13 +318,13 @@ public class HDFArray {
if (_theArray == null) {
/* exception: not an array */
HDF5JavaException ex = new HDF5JavaException("arrayify: not an array?: ");
- throw (ex);
+ throw(ex);
}
if (java.lang.reflect.Array.getLength(bytes) != ArrayDescriptor.totalSize) {
/* exception: array not right size */
HDF5JavaException ex = new HDF5JavaException("arrayify: array is wrong size?: ");
- throw (ex);
+ throw(ex);
}
_barray = bytes; /* hope that the bytes are correct.... */
@@ -387,74 +393,77 @@ public class HDFArray {
return _theArray;
}
else {
- HDF5JavaException ex = new HDF5JavaException("arrayify: Object type not implemented yet...");
- throw (ex);
+ HDF5JavaException ex =
+ new HDF5JavaException("arrayify: Object type not implemented yet...");
+ throw(ex);
}
}
else {
- HDF5JavaException ex = new HDF5JavaException("arrayify: unknown type not implemented yet...");
- throw (ex);
+ HDF5JavaException ex =
+ new HDF5JavaException("arrayify: unknown type not implemented yet...");
+ throw(ex);
}
}
catch (OutOfMemoryError err) {
HDF5JavaException ex = new HDF5JavaException("HDFArray: arrayify array too big?");
- throw (ex);
+ throw(ex);
}
}
/* Assert dims >= 2 */
Object oo = _theArray;
- int n = 0; /* the current byte */
- int m = 0; /* the current array index */
+ int n = 0; /* the current byte */
+ int m = 0; /* the current array index */
int index = 0;
int i;
Object flattenedArray = null;
switch (ArrayDescriptor.NT) {
case 'J':
- flattenedArray = (Object) HDFNativeData.byteToLong(_barray);
+ flattenedArray = (Object)HDFNativeData.byteToLong(_barray);
break;
case 'S':
- flattenedArray = (Object) HDFNativeData.byteToShort(_barray);
+ flattenedArray = (Object)HDFNativeData.byteToShort(_barray);
break;
case 'I':
- flattenedArray = (Object) HDFNativeData.byteToInt(_barray);
+ flattenedArray = (Object)HDFNativeData.byteToInt(_barray);
break;
case 'F':
- flattenedArray = (Object) HDFNativeData.byteToFloat(_barray);
+ flattenedArray = (Object)HDFNativeData.byteToFloat(_barray);
break;
case 'D':
- flattenedArray = (Object) HDFNativeData.byteToDouble(_barray);
+ flattenedArray = (Object)HDFNativeData.byteToDouble(_barray);
break;
case 'B':
- flattenedArray = (Object) _barray;
+ flattenedArray = (Object)_barray;
break;
- case 'L':
- {
- if (ArrayDescriptor.className.equals("java.lang.Byte"))
- flattenedArray = (Object) ByteToByteObj(_barray);
- else if (ArrayDescriptor.className.equals("java.lang.Short"))
- flattenedArray = (Object) ByteToShort(_barray);
- else if (ArrayDescriptor.className.equals("java.lang.Integer"))
- flattenedArray = (Object) ByteToInteger(_barray);
- else if (ArrayDescriptor.className.equals("java.lang.Long"))
- flattenedArray = (Object) ByteToLongObj(_barray);
- else if (ArrayDescriptor.className.equals("java.lang.Float"))
- flattenedArray = (Object) ByteToFloatObj(_barray);
- else if (ArrayDescriptor.className.equals("java.lang.Double"))
- flattenedArray = (Object) ByteToDoubleObj(_barray);
- else {
- HDF5JavaException ex = new HDF5JavaException("HDFArray: unsupported Object type: " + ArrayDescriptor.NT);
- throw (ex);
- }
- } // end of statement for arrays of boxed objects
+ case 'L': {
+ if (ArrayDescriptor.className.equals("java.lang.Byte"))
+ flattenedArray = (Object)ByteToByteObj(_barray);
+ else if (ArrayDescriptor.className.equals("java.lang.Short"))
+ flattenedArray = (Object)ByteToShort(_barray);
+ else if (ArrayDescriptor.className.equals("java.lang.Integer"))
+ flattenedArray = (Object)ByteToInteger(_barray);
+ else if (ArrayDescriptor.className.equals("java.lang.Long"))
+ flattenedArray = (Object)ByteToLongObj(_barray);
+ else if (ArrayDescriptor.className.equals("java.lang.Float"))
+ flattenedArray = (Object)ByteToFloatObj(_barray);
+ else if (ArrayDescriptor.className.equals("java.lang.Double"))
+ flattenedArray = (Object)ByteToDoubleObj(_barray);
+ else {
+ HDF5JavaException ex =
+ new HDF5JavaException("HDFArray: unsupported Object type: " + ArrayDescriptor.NT);
+ throw(ex);
+ }
+ } // end of statement for arrays of boxed objects
default:
- HDF5JavaException ex = new HDF5JavaException("HDFArray: unknown or unsupported type: " + ArrayDescriptor.NT);
- throw (ex);
+ HDF5JavaException ex =
+ new HDF5JavaException("HDFArray: unknown or unsupported type: " + ArrayDescriptor.NT);
+ throw(ex);
} // end of switch statement for arrays of primitives
while (n < ArrayDescriptor.totalSize) {
- oo = ArrayDescriptor.objs[0];
+ oo = ArrayDescriptor.objs[0];
index = n / ArrayDescriptor.bytetoindex[0];
index %= ArrayDescriptor.dimlen[0];
for (i = 0; i < (ArrayDescriptor.dims); i++) {
@@ -471,86 +480,88 @@ public class HDFArray {
System.out.println("out of bounds?");
return null;
}
- oo = java.lang.reflect.Array.get(oo, index);
+ oo = java.lang.reflect.Array.get(oo, index);
ArrayDescriptor.currentindex[i] = index;
- ArrayDescriptor.objs[i] = oo;
+ ArrayDescriptor.objs[i] = oo;
}
}
/* array-ify */
try {
Object arow = null;
- int mm = m + ArrayDescriptor.dimlen[ArrayDescriptor.dims];
+ int mm = m + ArrayDescriptor.dimlen[ArrayDescriptor.dims];
switch (ArrayDescriptor.NT) {
case 'B':
- arow = (Object) Arrays.copyOfRange((byte[]) flattenedArray, m, mm);
+ arow = (Object)Arrays.copyOfRange((byte[])flattenedArray, m, mm);
break;
case 'S':
- arow = (Object) Arrays.copyOfRange((short[]) flattenedArray, m, mm);
+ arow = (Object)Arrays.copyOfRange((short[])flattenedArray, m, mm);
break;
case 'I':
- arow = (Object) Arrays.copyOfRange((int[]) flattenedArray, m, mm);
+ arow = (Object)Arrays.copyOfRange((int[])flattenedArray, m, mm);
break;
case 'J':
- arow = (Object) Arrays.copyOfRange((long[]) flattenedArray, m, mm);
+ arow = (Object)Arrays.copyOfRange((long[])flattenedArray, m, mm);
break;
case 'F':
- arow = (Object) Arrays.copyOfRange((float[]) flattenedArray, m, mm);
+ arow = (Object)Arrays.copyOfRange((float[])flattenedArray, m, mm);
break;
case 'D':
- arow = (Object) Arrays.copyOfRange((double[]) flattenedArray, m, mm);
+ arow = (Object)Arrays.copyOfRange((double[])flattenedArray, m, mm);
break;
- case 'L':
- {
- if (ArrayDescriptor.className.equals("java.lang.Byte"))
- arow = (Object) Arrays.copyOfRange((Byte[]) flattenedArray, m, mm);
- else if (ArrayDescriptor.className.equals("java.lang.Short"))
- arow = (Object) Arrays.copyOfRange((Short[]) flattenedArray, m, mm);
- else if (ArrayDescriptor.className.equals("java.lang.Integer"))
- arow = (Object) Arrays.copyOfRange((Integer[]) flattenedArray, m, mm);
- else if (ArrayDescriptor.className.equals("java.lang.Long"))
- arow = (Object) Arrays.copyOfRange((Long[]) flattenedArray, m, mm);
- else if (ArrayDescriptor.className.equals("java.lang.Float"))
- arow = (Object) Arrays.copyOfRange((Float[]) flattenedArray, m, mm);
- else if (ArrayDescriptor.className.equals("java.lang.Double"))
- arow = (Object) Arrays.copyOfRange((Double[]) flattenedArray, m, mm);
- else {
- HDF5JavaException ex = new HDF5JavaException("HDFArray: unsupported Object type: " + ArrayDescriptor.NT);
- throw (ex);
- }
- } // end of statement for arrays of boxed numerics
+ case 'L': {
+ if (ArrayDescriptor.className.equals("java.lang.Byte"))
+ arow = (Object)Arrays.copyOfRange((Byte[])flattenedArray, m, mm);
+ else if (ArrayDescriptor.className.equals("java.lang.Short"))
+ arow = (Object)Arrays.copyOfRange((Short[])flattenedArray, m, mm);
+ else if (ArrayDescriptor.className.equals("java.lang.Integer"))
+ arow = (Object)Arrays.copyOfRange((Integer[])flattenedArray, m, mm);
+ else if (ArrayDescriptor.className.equals("java.lang.Long"))
+ arow = (Object)Arrays.copyOfRange((Long[])flattenedArray, m, mm);
+ else if (ArrayDescriptor.className.equals("java.lang.Float"))
+ arow = (Object)Arrays.copyOfRange((Float[])flattenedArray, m, mm);
+ else if (ArrayDescriptor.className.equals("java.lang.Double"))
+ arow = (Object)Arrays.copyOfRange((Double[])flattenedArray, m, mm);
+ else {
+ HDF5JavaException ex =
+ new HDF5JavaException("HDFArray: unsupported Object type: " + ArrayDescriptor.NT);
+ throw(ex);
+ }
+ } // end of statement for arrays of boxed numerics
} // end of switch statement for arrays of primitives
java.lang.reflect.Array.set(ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
- (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), arow);
+ (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), arow);
n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
m = mm;
}
catch (OutOfMemoryError err) {
HDF5JavaException ex = new HDF5JavaException("HDFArray: arrayify array too big?");
- throw (ex);
+ throw(ex);
}
}
/* assert: the whole array is completed--currentindex should == len - 1 */
/* error checks */
if (n < ArrayDescriptor.totalSize) {
- throw new java.lang.InternalError(new String("HDFArray::arrayify Panic didn't complete all input data: n= "
- + n + " size = " + ArrayDescriptor.totalSize));
+ throw new java.lang.InternalError(
+ new String("HDFArray::arrayify Panic didn't complete all input data: n= " + n +
+ " size = " + ArrayDescriptor.totalSize));
}
for (i = 0; i <= ArrayDescriptor.dims - 2; i++) {
if (ArrayDescriptor.currentindex[i] != ArrayDescriptor.dimlen[i] - 1) {
throw new java.lang.InternalError(
- new String("HDFArray::arrayify Panic didn't complete all data: currentindex[" + i + "] = "
- + ArrayDescriptor.currentindex[i] + " (should be " + (ArrayDescriptor.dimlen[i] - 1)
- + "?"));
+ new String("HDFArray::arrayify Panic didn't complete all data: currentindex[" + i +
+ "] = " + ArrayDescriptor.currentindex[i] + " (should be " +
+ (ArrayDescriptor.dimlen[i] - 1) + "?"));
}
}
- if (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1] != ArrayDescriptor.dimlen[ArrayDescriptor.dims - 1]) {
- throw new java.lang.InternalError(
- new String("HDFArray::arrayify Panic didn't complete all data: currentindex[" + i + "] = "
- + ArrayDescriptor.currentindex[i] + " (should be " + (ArrayDescriptor.dimlen[i]) + "?"));
+ if (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1] !=
+ ArrayDescriptor.dimlen[ArrayDescriptor.dims - 1]) {
+ throw new java.lang.InternalError(new String(
+ "HDFArray::arrayify Panic didn't complete all data: currentindex[" + i + "] = " +
+ ArrayDescriptor.currentindex[i] + " (should be " + (ArrayDescriptor.dimlen[i]) + "?"));
}
return _theArray;
@@ -559,7 +570,7 @@ public class HDFArray {
private byte[] IntegerToByte(Integer in[])
{
int nelems = java.lang.reflect.Array.getLength(in);
- int[] out = new int[nelems];
+ int[] out = new int[nelems];
for (int i = 0; i < nelems; i++) {
out[i] = in[i].intValue();
@@ -569,8 +580,8 @@ public class HDFArray {
private Integer[] ByteToInteger(byte[] bin)
{
- int in[] = HDFNativeData.byteToInt(bin);
- int nelems = java.lang.reflect.Array.getLength(in);
+ int in[] = HDFNativeData.byteToInt(bin);
+ int nelems = java.lang.reflect.Array.getLength(in);
Integer[] out = new Integer[nelems];
for (int i = 0; i < nelems; i++) {
@@ -581,8 +592,8 @@ public class HDFArray {
private Integer[] ByteToInteger(int start, int len, byte[] bin)
{
- int in[] = HDFNativeData.byteToInt(start, len, bin);
- int nelems = java.lang.reflect.Array.getLength(in);
+ int in[] = HDFNativeData.byteToInt(start, len, bin);
+ int nelems = java.lang.reflect.Array.getLength(in);
Integer[] out = new Integer[nelems];
for (int i = 0; i < nelems; i++) {
@@ -593,7 +604,7 @@ public class HDFArray {
private byte[] ShortToByte(Short in[])
{
- int nelems = java.lang.reflect.Array.getLength(in);
+ int nelems = java.lang.reflect.Array.getLength(in);
short[] out = new short[nelems];
for (int i = 0; i < nelems; i++) {
@@ -604,8 +615,8 @@ public class HDFArray {
private Short[] ByteToShort(byte[] bin)
{
- short in[] = HDFNativeData.byteToShort(bin);
- int nelems = java.lang.reflect.Array.getLength((Object) in);
+ short in[] = HDFNativeData.byteToShort(bin);
+ int nelems = java.lang.reflect.Array.getLength((Object)in);
Short[] out = new Short[nelems];
for (int i = 0; i < nelems; i++) {
@@ -616,8 +627,8 @@ public class HDFArray {
private Short[] ByteToShort(int start, int len, byte[] bin)
{
- short in[] = (short[]) HDFNativeData.byteToShort(start, len, bin);
- int nelems = java.lang.reflect.Array.getLength((Object) in);
+ short in[] = (short[])HDFNativeData.byteToShort(start, len, bin);
+ int nelems = java.lang.reflect.Array.getLength((Object)in);
Short[] out = new Short[nelems];
for (int i = 0; i < nelems; i++) {
@@ -628,7 +639,7 @@ public class HDFArray {
private byte[] ByteObjToByte(Byte in[])
{
- int nelems = java.lang.reflect.Array.getLength((Object) in);
+ int nelems = java.lang.reflect.Array.getLength((Object)in);
byte[] out = new byte[nelems];
for (int i = 0; i < nelems; i++) {
@@ -639,7 +650,7 @@ public class HDFArray {
private Byte[] ByteToByteObj(byte[] bin)
{
- int nelems = java.lang.reflect.Array.getLength((Object) bin);
+ int nelems = java.lang.reflect.Array.getLength((Object)bin);
Byte[] out = new Byte[nelems];
for (int i = 0; i < nelems; i++) {
@@ -660,7 +671,7 @@ public class HDFArray {
private byte[] FloatObjToByte(Float in[])
{
- int nelems = java.lang.reflect.Array.getLength((Object) in);
+ int nelems = java.lang.reflect.Array.getLength((Object)in);
float[] out = new float[nelems];
for (int i = 0; i < nelems; i++) {
@@ -671,8 +682,8 @@ public class HDFArray {
private Float[] ByteToFloatObj(byte[] bin)
{
- float in[] = (float[]) HDFNativeData.byteToFloat(bin);
- int nelems = java.lang.reflect.Array.getLength((Object) in);
+ float in[] = (float[])HDFNativeData.byteToFloat(bin);
+ int nelems = java.lang.reflect.Array.getLength((Object)in);
Float[] out = new Float[nelems];
for (int i = 0; i < nelems; i++) {
@@ -683,8 +694,8 @@ public class HDFArray {
private Float[] ByteToFloatObj(int start, int len, byte[] bin)
{
- float in[] = (float[]) HDFNativeData.byteToFloat(start, len, bin);
- int nelems = java.lang.reflect.Array.getLength((Object) in);
+ float in[] = (float[])HDFNativeData.byteToFloat(start, len, bin);
+ int nelems = java.lang.reflect.Array.getLength((Object)in);
Float[] out = new Float[nelems];
for (int i = 0; i < nelems; i++) {
@@ -695,7 +706,7 @@ public class HDFArray {
private byte[] DoubleObjToByte(Double in[])
{
- int nelems = java.lang.reflect.Array.getLength((Object) in);
+ int nelems = java.lang.reflect.Array.getLength((Object)in);
double[] out = new double[nelems];
for (int i = 0; i < nelems; i++) {
@@ -706,8 +717,8 @@ public class HDFArray {
private Double[] ByteToDoubleObj(byte[] bin)
{
- double in[] = (double[]) HDFNativeData.byteToDouble(bin);
- int nelems = java.lang.reflect.Array.getLength((Object) in);
+ double in[] = (double[])HDFNativeData.byteToDouble(bin);
+ int nelems = java.lang.reflect.Array.getLength((Object)in);
Double[] out = new Double[nelems];
for (int i = 0; i < nelems; i++) {
@@ -718,8 +729,8 @@ public class HDFArray {
private Double[] ByteToDoubleObj(int start, int len, byte[] bin)
{
- double in[] = (double[]) HDFNativeData.byteToDouble(start, len, bin);
- int nelems = java.lang.reflect.Array.getLength((Object) in);
+ double in[] = (double[])HDFNativeData.byteToDouble(start, len, bin);
+ int nelems = java.lang.reflect.Array.getLength((Object)in);
Double[] out = new Double[nelems];
for (int i = 0; i < nelems; i++) {
@@ -730,7 +741,7 @@ public class HDFArray {
private byte[] LongObjToByte(Long in[])
{
- int nelems = java.lang.reflect.Array.getLength((Object) in);
+ int nelems = java.lang.reflect.Array.getLength((Object)in);
long[] out = new long[nelems];
for (int i = 0; i < nelems; i++) {
@@ -741,8 +752,8 @@ public class HDFArray {
private Long[] ByteToLongObj(byte[] bin)
{
- long in[] = (long[]) HDFNativeData.byteToLong(bin);
- int nelems = java.lang.reflect.Array.getLength((Object) in);
+ long in[] = (long[])HDFNativeData.byteToLong(bin);
+ int nelems = java.lang.reflect.Array.getLength((Object)in);
Long[] out = new Long[nelems];
for (int i = 0; i < nelems; i++) {
@@ -753,8 +764,8 @@ public class HDFArray {
private Long[] ByteToLongObj(int start, int len, byte[] bin)
{
- long in[] = (long[]) HDFNativeData.byteToLong(start, len, bin);
- int nelems = java.lang.reflect.Array.getLength((Object) in);
+ long in[] = (long[])HDFNativeData.byteToLong(start, len, bin);
+ int nelems = java.lang.reflect.Array.getLength((Object)in);
Long[] out = new Long[nelems];
for (int i = 0; i < nelems; i++) {
@@ -770,18 +781,18 @@ public class HDFArray {
* We use java.lang.reflection here.
*/
class ArrayDescriptor {
- static String theType = "";
- static Class theClass = null;
- static int[] dimlen = null;
- static int[] dimstart = null;
+ static String theType = "";
+ static Class theClass = null;
+ static int[] dimlen = null;
+ static int[] dimstart = null;
static int[] currentindex = null;
- static int[] bytetoindex = null;
- static int totalSize = 0;
- static int totalElements = 0;
- static Object[] objs = null;
- static char NT = ' '; /* must be B,S,I,L,F,D, else error */
- static int NTsize = 0;
- static int dims = 0;
+ static int[] bytetoindex = null;
+ static int totalSize = 0;
+ static int totalElements = 0;
+ static Object[] objs = null;
+ static char NT = ' '; /* must be B,S,I,L,F,D, else error */
+ static int NTsize = 0;
+ static int dims = 0;
static String className;
public ArrayDescriptor(Object anArray) throws HDF5JavaException
@@ -790,7 +801,7 @@ class ArrayDescriptor {
if (tc.isArray() == false) {
/* exception: not an array */
HDF5JavaException ex = new HDF5JavaException("ArrayDescriptor: not an array?: ");
- throw (ex);
+ throw(ex);
}
theClass = tc;
@@ -799,10 +810,10 @@ class ArrayDescriptor {
* parse the type descriptor to discover the shape of the array
*/
String ss = tc.toString();
- theType = ss;
- int n = 6;
- dims = 0;
- char c = ' ';
+ theType = ss;
+ int n = 6;
+ dims = 0;
+ char c = ' ';
while (n < ss.length()) {
c = ss.charAt(n);
n++;
@@ -811,10 +822,10 @@ class ArrayDescriptor {
}
}
- String css = ss.substring(ss.lastIndexOf('[') + 1);
+ String css = ss.substring(ss.lastIndexOf('[') + 1);
Class compC = tc.getComponentType();
- String cs = compC.toString();
- NT = c; /* must be B,S,I,L,F,D, else error */
+ String cs = compC.toString();
+ NT = c; /* must be B,S,I,L,F,D, else error */
if (NT == 'B') {
NTsize = 1;
}
@@ -828,68 +839,69 @@ class ArrayDescriptor {
NTsize = 8;
}
else if (css.startsWith("Ljava.lang.Byte")) {
- NT = 'L';
+ NT = 'L';
className = "java.lang.Byte";
- NTsize = 1;
+ NTsize = 1;
}
else if (css.startsWith("Ljava.lang.Short")) {
- NT = 'L';
+ NT = 'L';
className = "java.lang.Short";
- NTsize = 2;
+ NTsize = 2;
}
else if (css.startsWith("Ljava.lang.Integer")) {
- NT = 'L';
+ NT = 'L';
className = "java.lang.Integer";
- NTsize = 4;
+ NTsize = 4;
}
else if (css.startsWith("Ljava.lang.Float")) {
- NT = 'L';
+ NT = 'L';
className = "java.lang.Float";
- NTsize = 4;
+ NTsize = 4;
}
else if (css.startsWith("Ljava.lang.Double")) {
- NT = 'L';
+ NT = 'L';
className = "java.lang.Double";
- NTsize = 8;
+ NTsize = 8;
}
else if (css.startsWith("Ljava.lang.Long")) {
- NT = 'L';
+ NT = 'L';
className = "java.lang.Long";
- NTsize = 8;
+ NTsize = 8;
}
else if (css.startsWith("Ljava.lang.String")) {
- NT = 'L';
+ NT = 'L';
className = "java.lang.String";
- NTsize = 1;
- throw new HDF5JavaException(new String("ArrayDesciptor: Warning: String array not fully supported yet"));
+ NTsize = 1;
+ throw new HDF5JavaException(
+ new String("ArrayDesciptor: Warning: String array not fully supported yet"));
}
else {
/*
* exception: not a numeric type
*/
throw new HDF5JavaException(
- new String("ArrayDesciptor: Error: array is not numeric (type is " + css + ") ?"));
+ new String("ArrayDesciptor: Error: array is not numeric (type is " + css + ") ?"));
}
/* fill in the table */
- dimlen = new int[dims + 1];
- dimstart = new int[dims + 1];
+ dimlen = new int[dims + 1];
+ dimstart = new int[dims + 1];
currentindex = new int[dims + 1];
- bytetoindex = new int[dims + 1];
- objs = new Object[dims + 1];
+ bytetoindex = new int[dims + 1];
+ objs = new Object[dims + 1];
- Object o = anArray;
- objs[0] = o;
- dimlen[0] = 1;
- dimstart[0] = 0;
+ Object o = anArray;
+ objs[0] = o;
+ dimlen[0] = 1;
+ dimstart[0] = 0;
currentindex[0] = 0;
- int elements = 1;
+ int elements = 1;
int i;
for (i = 1; i <= dims; i++) {
- dimlen[i] = java.lang.reflect.Array.getLength((Object) o);
- o = java.lang.reflect.Array.get((Object) o, 0);
- objs[i] = o;
- dimstart[i] = 0;
+ dimlen[i] = java.lang.reflect.Array.getLength((Object)o);
+ o = java.lang.reflect.Array.get((Object)o, 0);
+ objs[i] = o;
+ dimstart[i] = 0;
currentindex[i] = 0;
elements *= dimlen[i];
}
@@ -917,14 +929,15 @@ class ArrayDescriptor {
System.out.println("Type: " + theType);
System.out.println("Class: " + theClass);
System.out.println("NT: " + NT + " NTsize: " + NTsize);
- System.out.println("Array has " + dims + " dimensions (" + totalSize
- + " bytes, " + totalElements + " elements)");
+ System.out.println("Array has " + dims + " dimensions (" + totalSize + " bytes, " + totalElements +
+ " elements)");
int i;
for (i = 0; i <= dims; i++) {
- Class tc = objs[i].getClass();
+ Class tc = objs[i].getClass();
String ss = tc.toString();
- System.out.println(i + ": start " + dimstart[i] + ": len " + dimlen[i] + " current " + currentindex[i]
- + " bytetoindex " + bytetoindex[i] + " object " + objs[i] + " otype " + ss);
+ System.out.println(i + ": start " + dimstart[i] + ": len " + dimlen[i] + " current " +
+ currentindex[i] + " bytetoindex " + bytetoindex[i] + " object " + objs[i] +
+ " otype " + ss);
}
}
}
diff --git a/java/src/hdf/hdf5lib/HDFNativeData.java b/java/src/hdf/hdf5lib/HDFNativeData.java
index 85378db..c497043 100644
--- a/java/src/hdf/hdf5lib/HDFNativeData.java
+++ b/java/src/hdf/hdf5lib/HDFNativeData.java
@@ -95,8 +95,7 @@ public class HDFNativeData {
* The input array of bytes
* @return an array of 'len' int
*/
- public synchronized static native int[] byteToInt(int start, int len,
- byte[] data);
+ public synchronized static native int[] byteToInt(int start, int len, byte[] data);
/**
* Convert 4 bytes from an array of bytes into a single int
@@ -107,9 +106,10 @@ public class HDFNativeData {
* The input array of bytes
* @return The integer value of the bytes.
*/
- public synchronized static int byteToInt(byte[] data, int start) {
+ public synchronized static int byteToInt(byte[] data, int start)
+ {
int[] ival = new int[1];
- ival = byteToInt(start, 1, data);
+ ival = byteToInt(start, 1, data);
return (ival[0]);
}
@@ -124,8 +124,7 @@ public class HDFNativeData {
* The input array of bytes
* @return an array of 'len' short
*/
- public synchronized static native short[] byteToShort(int start, int len,
- byte[] data);
+ public synchronized static native short[] byteToShort(int start, int len, byte[] data);
/**
* Convert 2 bytes from an array of bytes into a single short
@@ -136,9 +135,10 @@ public class HDFNativeData {
* The input array of bytes
* @return The short value of the bytes.
*/
- public synchronized static short byteToShort(byte[] data, int start) {
+ public synchronized static short byteToShort(byte[] data, int start)
+ {
short[] sval = new short[1];
- sval = byteToShort(start, 1, data);
+ sval = byteToShort(start, 1, data);
return (sval[0]);
}
@@ -164,9 +164,10 @@ public class HDFNativeData {
* The input array of bytes
* @return The float value of the bytes.
*/
- public synchronized static float byteToFloat(byte[] data, int start) {
+ public synchronized static float byteToFloat(byte[] data, int start)
+ {
float[] fval = new float[1];
- fval = byteToFloat(start, 1, data);
+ fval = byteToFloat(start, 1, data);
return (fval[0]);
}
@@ -181,8 +182,7 @@ public class HDFNativeData {
* The input array of bytes
* @return an array of 'len' long
*/
- public synchronized static native long[] byteToLong(int start, int len,
- byte[] data);
+ public synchronized static native long[] byteToLong(int start, int len, byte[] data);
/**
* Convert 8 bytes from an array of bytes into a single long
@@ -193,9 +193,10 @@ public class HDFNativeData {
* The input array of bytes
* @return The long value of the bytes.
*/
- public synchronized static long byteToLong(byte[] data, int start) {
+ public synchronized static long byteToLong(byte[] data, int start)
+ {
long[] lval = new long[1];
- lval = byteToLong(start, 1, data);
+ lval = byteToLong(start, 1, data);
return (lval[0]);
}
@@ -210,8 +211,7 @@ public class HDFNativeData {
* The input array of bytes
* @return an array of 'len' double
*/
- public synchronized static native double[] byteToDouble(int start, int len,
- byte[] data);
+ public synchronized static native double[] byteToDouble(int start, int len, byte[] data);
/**
* Convert 8 bytes from an array of bytes into a single double
@@ -222,9 +222,10 @@ public class HDFNativeData {
* The input array of bytes
* @return The double value of the bytes.
*/
- public synchronized static double byteToDouble(byte[] data, int start) {
+ public synchronized static double byteToDouble(byte[] data, int start)
+ {
double[] dval = new double[1];
- dval = byteToDouble(start, 1, data);
+ dval = byteToDouble(start, 1, data);
return (dval[0]);
}
@@ -239,8 +240,7 @@ public class HDFNativeData {
* The input array of int
* @return an array of bytes
*/
- public synchronized static native byte[] intToByte(int start, int len,
- int[] data);
+ public synchronized static native byte[] intToByte(int start, int len, int[] data);
/**
* Convert a range from an array of short into an array of bytes.
@@ -253,8 +253,7 @@ public class HDFNativeData {
* The input array of short
* @return an array of bytes
*/
- public synchronized static native byte[] shortToByte(int start, int len,
- short[] data);
+ public synchronized static native byte[] shortToByte(int start, int len, short[] data);
/**
* Convert a range from an array of float into an array of bytes.
@@ -267,8 +266,7 @@ public class HDFNativeData {
* The input array of float
* @return an array of bytes
*/
- public synchronized static native byte[] floatToByte(int start, int len,
- float[] data);
+ public synchronized static native byte[] floatToByte(int start, int len, float[] data);
/**
* Convert a range from an array of long into an array of bytes.
@@ -281,8 +279,7 @@ public class HDFNativeData {
* The input array of long
* @return an array of bytes
*/
- public synchronized static native byte[] longToByte(int start, int len,
- long[] data);
+ public synchronized static native byte[] longToByte(int start, int len, long[] data);
/**
* Convert a range from an array of double into an array of bytes.
@@ -295,8 +292,7 @@ public class HDFNativeData {
* The input array of double
* @return an array of bytes
*/
- public synchronized static native byte[] doubleToByte(int start, int len,
- double[] data);
+ public synchronized static native byte[] doubleToByte(int start, int len, double[] data);
/**
* Convert a single byte into an array of one byte.
@@ -318,9 +314,7 @@ public class HDFNativeData {
* The input Byte
* @return an array of bytes
*/
- public synchronized static byte[] byteToByte(Byte data) {
- return byteToByte(data.byteValue());
- }
+ public synchronized static byte[] byteToByte(Byte data) { return byteToByte(data.byteValue()); }
/**
* Convert a single int into an array of 4 bytes.
@@ -338,9 +332,7 @@ public class HDFNativeData {
* The input Integer
* @return an array of bytes
*/
- public synchronized static byte[] intToByte(Integer data) {
- return intToByte(data.intValue());
- }
+ public synchronized static byte[] intToByte(Integer data) { return intToByte(data.intValue()); }
/**
* Convert a single short into an array of 2 bytes.
@@ -358,9 +350,7 @@ public class HDFNativeData {
* The input Short
* @return an array of bytes
*/
- public synchronized static byte[] shortToByte(Short data) {
- return shortToByte(data.shortValue());
- }
+ public synchronized static byte[] shortToByte(Short data) { return shortToByte(data.shortValue()); }
/**
* Convert a single float into an array of 4 bytes.
@@ -378,9 +368,7 @@ public class HDFNativeData {
* The input Float
* @return an array of bytes
*/
- public synchronized static byte[] floatToByte(Float data) {
- return floatToByte(data.floatValue());
- };
+ public synchronized static byte[] floatToByte(Float data) { return floatToByte(data.floatValue()); };
/**
* Convert a single long into an array of 8 bytes.
@@ -398,9 +386,7 @@ public class HDFNativeData {
* The input Long
* @return an array of bytes
*/
- public synchronized static byte[] longToByte(Long data) {
- return longToByte(data.longValue());
- }
+ public synchronized static byte[] longToByte(Long data) { return longToByte(data.longValue()); }
/**
* Convert a single double into an array of 8 bytes.
@@ -418,9 +404,7 @@ public class HDFNativeData {
* The input Double
* @return an array of bytes
*/
- public synchronized static byte[] doubleToByte(Double data) {
- return doubleToByte(data.doubleValue());
- }
+ public synchronized static byte[] doubleToByte(Double data) { return doubleToByte(data.doubleValue()); }
/**
* Create a Number object from an array of bytes.
@@ -435,40 +419,39 @@ public class HDFNativeData {
* @exception HDF5Exception
* - Error unsupported type.
*/
- public synchronized static Object byteToNumber(byte[] barray, Object obj)
- throws HDF5Exception
+ public synchronized static Object byteToNumber(byte[] barray, Object obj) throws HDF5Exception
{
Class theClass = obj.getClass();
- String type = theClass.getName();
- Object retobj = null;
+ String type = theClass.getName();
+ Object retobj = null;
if (type.equals("java.lang.Integer")) {
int[] i = hdf.hdf5lib.HDFNativeData.byteToInt(0, 1, barray);
- retobj = Integer.valueOf(i[0]);
+ retobj = Integer.valueOf(i[0]);
}
else if (type.equals("java.lang.Byte")) {
retobj = Byte.valueOf(barray[0]);
}
else if (type.equals("java.lang.Short")) {
short[] f = hdf.hdf5lib.HDFNativeData.byteToShort(0, 1, barray);
- retobj = Short.valueOf(f[0]);
+ retobj = Short.valueOf(f[0]);
}
else if (type.equals("java.lang.Float")) {
float[] f = hdf.hdf5lib.HDFNativeData.byteToFloat(0, 1, barray);
- retobj = Float.valueOf(f[0]);
+ retobj = Float.valueOf(f[0]);
}
else if (type.equals("java.lang.Long")) {
long[] f = hdf.hdf5lib.HDFNativeData.byteToLong(0, 1, barray);
- retobj = Long.valueOf(f[0]);
+ retobj = Long.valueOf(f[0]);
}
else if (type.equals("java.lang.Double")) {
double[] f = hdf.hdf5lib.HDFNativeData.byteToDouble(0, 1, barray);
- retobj = Double.valueOf(f[0]);
+ retobj = Double.valueOf(f[0]);
}
else {
/* exception: unsupported type */
HDF5Exception ex = new HDF5JavaException("byteToNumber: setfield bad type: " + obj + " " + type);
- throw (ex);
+ throw(ex);
}
return (retobj);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/Callbacks.java b/java/src/hdf/hdf5lib/callbacks/Callbacks.java
index 11fa465..86d6193 100644
--- a/java/src/hdf/hdf5lib/callbacks/Callbacks.java
+++ b/java/src/hdf/hdf5lib/callbacks/Callbacks.java
@@ -12,7 +12,8 @@
package hdf.hdf5lib.callbacks;
-/** All callback definitions must derive from this interface. Any
+/**
+ * All callback definitions must derive from this interface. Any
* derived interfaces must define a single public method named "callback".
* You are responsible for deregistering your callback (if necessary)
* in its {@link Object#finalize} method. If native code attempts to call
@@ -26,5 +27,4 @@ package hdf.hdf5lib.callbacks;
* handler.
*/
public interface Callbacks {
-
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java
index d612db3..45bde9a 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java
@@ -17,7 +17,8 @@ package hdf.hdf5lib.callbacks;
*
*/
public interface H5A_iterate_t {
-/** public ArrayList iterdata = new ArrayList();
- * Any derived interfaces must define the single public variable as above.
- */
+ /**
+ * public ArrayList iterdata = new ArrayList();
+ * Any derived interfaces must define the single public variable as above.
+ */
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java b/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java
index 7fdb454..cb17896 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java
@@ -17,7 +17,8 @@ package hdf.hdf5lib.callbacks;
*
*/
public interface H5D_append_t {
-/** public ArrayList iterdata = new ArrayList();
- * Any derived interfaces must define the single public variable as above.
- */
+ /**
+ * public ArrayList iterdata = new ArrayList();
+ * Any derived interfaces must define the single public variable as above.
+ */
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java
index 305cf98..fb48c73 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java
@@ -17,7 +17,8 @@ package hdf.hdf5lib.callbacks;
*
*/
public interface H5D_iterate_t {
-/** public ArrayList iterdata = new ArrayList();
- * Any derived interfaces must define the single public variable as above.
- */
+ /**
+ * public ArrayList iterdata = new ArrayList();
+ * Any derived interfaces must define the single public variable as above.
+ */
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java b/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java
index 5bf0c8b..131b33f 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java
@@ -17,7 +17,8 @@ package hdf.hdf5lib.callbacks;
*
*/
public interface H5E_walk_t {
-/** public ArrayList iterdata = new ArrayList();
- * Any derived interfaces must define the single public variable as above.
- */
+ /**
+ * public ArrayList iterdata = new ArrayList();
+ * Any derived interfaces must define the single public variable as above.
+ */
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java
index d89fd2a..c657dbc 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java
@@ -17,5 +17,4 @@ package hdf.hdf5lib.callbacks;
*
*/
public interface H5L_iterate_opdata_t {
-
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java
index fd643b4..f4a4412 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java
@@ -17,5 +17,4 @@ package hdf.hdf5lib.callbacks;
*
*/
public interface H5O_iterate_opdata_t {
-
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java
index 11e3a99..059addf 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java
@@ -17,7 +17,8 @@ package hdf.hdf5lib.callbacks;
*
*/
public interface H5P_cls_close_func_t {
-/** public ArrayList iterdata = new ArrayList();
- * Any derived interfaces must define the single public variable as above.
- */
+ /**
+ * public ArrayList iterdata = new ArrayList();
+ * Any derived interfaces must define the single public variable as above.
+ */
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java
index 78e5282..4b7cf11 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java
@@ -17,7 +17,8 @@ package hdf.hdf5lib.callbacks;
*
*/
public interface H5P_cls_copy_func_t {
-/** public ArrayList iterdata = new ArrayList();
- * Any derived interfaces must define the single public variable as above.
- */
+ /**
+ * public ArrayList iterdata = new ArrayList();
+ * Any derived interfaces must define the single public variable as above.
+ */
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java
index d919d97..917264d 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java
@@ -17,7 +17,8 @@ package hdf.hdf5lib.callbacks;
*
*/
public interface H5P_cls_create_func_t {
-/** public ArrayList iterdata = new ArrayList();
- * Any derived interfaces must define the single public variable as above.
- */
+ /**
+ * public ArrayList iterdata = new ArrayList();
+ * Any derived interfaces must define the single public variable as above.
+ */
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java
index 0035619..9c0d0eb 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java
@@ -17,7 +17,8 @@ package hdf.hdf5lib.callbacks;
*
*/
public interface H5P_iterate_t {
-/** public ArrayList iterdata = new ArrayList();
- * Any derived interfaces must define the single public variable as above.
- */
+ /**
+ * public ArrayList iterdata = new ArrayList();
+ * Any derived interfaces must define the single public variable as above.
+ */
}
diff --git a/java/src/hdf/hdf5lib/callbacks/package-info.java b/java/src/hdf/hdf5lib/callbacks/package-info.java
index 0833162..114045c 100644
--- a/java/src/hdf/hdf5lib/callbacks/package-info.java
+++ b/java/src/hdf/hdf5lib/callbacks/package-info.java
@@ -11,7 +11,8 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-/** All callback definitions must derive from the Callbacks interface. Any
+/**
+ * All callback definitions must derive from the Callbacks interface. Any
* derived interfaces must define a single public method named "callback".
* You are responsible for deregistering your callback (if necessary)
* in its {@link Object#finalize} method. If native code attempts to call
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5AttributeException.java b/java/src/hdf/hdf5lib/exceptions/HDF5AttributeException.java
index 86dad88..4cb7b1d 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5AttributeException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5AttributeException.java
@@ -23,9 +23,7 @@ public class HDF5AttributeException extends HDF5LibraryException {
* Constructs an <code>HDF5AttributeException</code> with no specified
* detail message.
*/
- public HDF5AttributeException() {
- super();
- }
+ public HDF5AttributeException() { super(); }
/**
* Constructs an <code>HDF5AttributeException</code> with the specified
@@ -34,7 +32,5 @@ public class HDF5AttributeException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5AttributeException(String s) {
- super(s);
- }
+ public HDF5AttributeException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5BtreeException.java b/java/src/hdf/hdf5lib/exceptions/HDF5BtreeException.java
index 97585d3..9f70456 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5BtreeException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5BtreeException.java
@@ -23,9 +23,7 @@ public class HDF5BtreeException extends HDF5LibraryException {
* Constructs an <code>HDF5BtreeException</code> with no specified detail
* message.
*/
- public HDF5BtreeException() {
- super();
- }
+ public HDF5BtreeException() { super(); }
/**
* Constructs an <code>HDF5BtreeException</code> with the specified detail
@@ -34,7 +32,5 @@ public class HDF5BtreeException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5BtreeException(String s) {
- super(s);
- }
+ public HDF5BtreeException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5DataFiltersException.java b/java/src/hdf/hdf5lib/exceptions/HDF5DataFiltersException.java
index b02d815..b4397b7 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5DataFiltersException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5DataFiltersException.java
@@ -23,9 +23,7 @@ public class HDF5DataFiltersException extends HDF5LibraryException {
* Constructs an <code>HDF5DataFiltersException</code> with no specified
* detail message.
*/
- public HDF5DataFiltersException() {
- super();
- }
+ public HDF5DataFiltersException() { super(); }
/**
* Constructs an <code>HDF5DataFiltersException</code> with the specified
@@ -34,7 +32,5 @@ public class HDF5DataFiltersException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5DataFiltersException(String s) {
- super(s);
- }
+ public HDF5DataFiltersException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5DataStorageException.java b/java/src/hdf/hdf5lib/exceptions/HDF5DataStorageException.java
index 416b06a..f6993a8 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5DataStorageException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5DataStorageException.java
@@ -24,9 +24,7 @@ public class HDF5DataStorageException extends HDF5LibraryException {
* Constructs an <code>HDF5DataStorageExceptionn</code> with no specified
* detail message.
*/
- public HDF5DataStorageException() {
- super();
- }
+ public HDF5DataStorageException() { super(); }
/**
* Constructs an <code>HDF5DataStorageException</code> with the specified
@@ -35,7 +33,5 @@ public class HDF5DataStorageException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5DataStorageException(String s) {
- super(s);
- }
+ public HDF5DataStorageException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.java
index 7bb22fa..8fd4ae9 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.java
@@ -23,9 +23,7 @@ public class HDF5DatasetInterfaceException extends HDF5LibraryException {
* Constructs an <code>HDF5DatasetInterfaceException</code> with no
* specified detail message.
*/
- public HDF5DatasetInterfaceException() {
- super();
- }
+ public HDF5DatasetInterfaceException() { super(); }
/**
* Constructs an <code>HDF5DatasetInterfaceException</code> with the
@@ -34,7 +32,5 @@ public class HDF5DatasetInterfaceException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5DatasetInterfaceException(String s) {
- super(s);
- }
+ public HDF5DatasetInterfaceException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.java
index 9a85ff0..d0d2a09 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.java
@@ -24,9 +24,7 @@ public class HDF5DataspaceInterfaceException extends HDF5LibraryException {
* Constructs an <code>HDF5DataspaceInterfaceException</code> with no
* specified detail message.
*/
- public HDF5DataspaceInterfaceException() {
- super();
- }
+ public HDF5DataspaceInterfaceException() { super(); }
/**
* Constructs an <code>HDF5DataspaceInterfaceException</code> with the
@@ -35,7 +33,5 @@ public class HDF5DataspaceInterfaceException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5DataspaceInterfaceException(String s) {
- super(s);
- }
+ public HDF5DataspaceInterfaceException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.java
index 45b0c55..2ab4ff9 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.java
@@ -24,9 +24,7 @@ public class HDF5DatatypeInterfaceException extends HDF5LibraryException {
* Constructs an <code>HDF5DatatypeInterfaceException</code> with no
* specified detail message.
*/
- public HDF5DatatypeInterfaceException() {
- super();
- }
+ public HDF5DatatypeInterfaceException() { super(); }
/**
* Constructs an <code>HDF5DatatypeInterfaceException</code> with the
@@ -35,7 +33,5 @@ public class HDF5DatatypeInterfaceException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5DatatypeInterfaceException(String s) {
- super(s);
- }
+ public HDF5DatatypeInterfaceException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java b/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java
index 0c23af1..b098a12 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java
@@ -40,9 +40,7 @@ public class HDF5Exception extends RuntimeException {
* Constructs an <code>HDF5Exception</code> with no specified detail
* message.
*/
- public HDF5Exception() {
- super();
- }
+ public HDF5Exception() { super(); }
/**
* Constructs an <code>HDF5Exception</code> with the specified detail
@@ -51,7 +49,8 @@ public class HDF5Exception extends RuntimeException {
* @param message
* the detail message.
*/
- public HDF5Exception(String message) {
+ public HDF5Exception(String message)
+ {
super();
detailMessage = message;
}
@@ -63,7 +62,8 @@ public class HDF5Exception extends RuntimeException {
* have a detail message.
*/
@Override
- public String getMessage() {
+ public String getMessage()
+ {
return detailMessage;
}
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.java b/java/src/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.java
index 73bf069..c8df3d0 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.java
@@ -24,9 +24,7 @@ public class HDF5ExternalFileListException extends HDF5LibraryException {
* Constructs an <code>HDF5ExternalFileListException</code> with no
* specified detail message.
*/
- public HDF5ExternalFileListException() {
- super();
- }
+ public HDF5ExternalFileListException() { super(); }
/**
* Constructs an <code>HDF5ExternalFileListException</code> with the
@@ -35,7 +33,5 @@ public class HDF5ExternalFileListException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5ExternalFileListException(String s) {
- super(s);
- }
+ public HDF5ExternalFileListException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5FileInterfaceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5FileInterfaceException.java
index ac82258..afd6d69 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5FileInterfaceException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5FileInterfaceException.java
@@ -24,9 +24,7 @@ public class HDF5FileInterfaceException extends HDF5LibraryException {
* Constructs an <code>HDF5FileInterfaceException</code> with no specified
* detail message.
*/
- public HDF5FileInterfaceException() {
- super();
- }
+ public HDF5FileInterfaceException() { super(); }
/**
* Constructs an <code>HDF5FileInterfaceException</code> with the specified
@@ -35,7 +33,5 @@ public class HDF5FileInterfaceException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5FileInterfaceException(String s) {
- super(s);
- }
+ public HDF5FileInterfaceException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5FunctionArgumentException.java b/java/src/hdf/hdf5lib/exceptions/HDF5FunctionArgumentException.java
index c4fcf30..58e2980 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5FunctionArgumentException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5FunctionArgumentException.java
@@ -24,9 +24,7 @@ public class HDF5FunctionArgumentException extends HDF5LibraryException {
* Constructs an <code>HDF5FunctionArgumentException</code> with no
* specified detail message.
*/
- public HDF5FunctionArgumentException() {
- super();
- }
+ public HDF5FunctionArgumentException() { super(); }
/**
* Constructs an <code>HDF5FunctionArgumentException</code> with the
@@ -35,7 +33,5 @@ public class HDF5FunctionArgumentException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5FunctionArgumentException(String s) {
- super(s);
- }
+ public HDF5FunctionArgumentException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException.java b/java/src/hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException.java
index ee34b59..db46aae 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException.java
@@ -24,9 +24,7 @@ public class HDF5FunctionEntryExitException extends HDF5LibraryException {
* Constructs an <code>HDF5FunctionEntryExitException</code> with no
* specified detail message.
*/
- public HDF5FunctionEntryExitException() {
- super();
- }
+ public HDF5FunctionEntryExitException() { super(); }
/**
* Constructs an <code>HDF5FunctionEntryExitException</code> with the
@@ -35,7 +33,5 @@ public class HDF5FunctionEntryExitException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5FunctionEntryExitException(String s) {
- super(s);
- }
+ public HDF5FunctionEntryExitException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5HeapException.java b/java/src/hdf/hdf5lib/exceptions/HDF5HeapException.java
index 1bb3251..7f1691d 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5HeapException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5HeapException.java
@@ -24,9 +24,7 @@ public class HDF5HeapException extends HDF5LibraryException {
* Constructs an <code>HDF5HeapException</code> with no specified detail
* message.
*/
- public HDF5HeapException() {
- super();
- }
+ public HDF5HeapException() { super(); }
/**
* Constructs an <code>HDF5HeapException</code> with the specified detail
@@ -35,7 +33,5 @@ public class HDF5HeapException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5HeapException(String s) {
- super(s);
- }
+ public HDF5HeapException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5IdException.java b/java/src/hdf/hdf5lib/exceptions/HDF5IdException.java
index 04ee0bc..5ce1f01 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5IdException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5IdException.java
@@ -24,9 +24,7 @@ public class HDF5IdException extends HDF5LibraryException {
* Constructs an <code>HDF5IdException</code> with no specified detail
* message.
*/
- public HDF5IdException() {
- super();
- }
+ public HDF5IdException() { super(); }
/**
* Constructs an <code>HDF5IdException</code> with the specified detail
@@ -35,8 +33,5 @@ public class HDF5IdException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5IdException(String s) {
- super(s);
- }
-
+ public HDF5IdException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5InternalErrorException.java b/java/src/hdf/hdf5lib/exceptions/HDF5InternalErrorException.java
index 810c126..4489486 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5InternalErrorException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5InternalErrorException.java
@@ -24,9 +24,7 @@ public class HDF5InternalErrorException extends HDF5LibraryException {
* Constructs an <code>HDF5InternalErrorException</code> with no specified
* detail message.
*/
- public HDF5InternalErrorException() {
- super();
- }
+ public HDF5InternalErrorException() { super(); }
/**
* Constructs an <code>HDF5InternalErrorException</code> with the specified
@@ -35,7 +33,5 @@ public class HDF5InternalErrorException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5InternalErrorException(String s) {
- super(s);
- }
+ public HDF5InternalErrorException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5JavaException.java b/java/src/hdf/hdf5lib/exceptions/HDF5JavaException.java
index 35720da..ae1cf85 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5JavaException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5JavaException.java
@@ -26,9 +26,7 @@ public class HDF5JavaException extends HDF5Exception {
* Constructs an <code>HDF5JavaException</code> with no specified detail
* message.
*/
- public HDF5JavaException() {
- super();
- }
+ public HDF5JavaException() { super(); }
/**
* Constructs an <code>HDF5JavaException</code> with the specified detail
@@ -37,7 +35,5 @@ public class HDF5JavaException extends HDF5Exception {
* @param s
* the detail message.
*/
- public HDF5JavaException(String s) {
- super(s);
- }
+ public HDF5JavaException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java b/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
index 9f94882..2a4c8c7 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
@@ -39,7 +39,8 @@ public class HDF5LibraryException extends HDF5Exception {
* Constructs an <code>HDF5LibraryException</code> with no specified detail
* message.
*/
- public HDF5LibraryException() {
+ public HDF5LibraryException()
+ {
super();
// this code forces the loading of the HDF-5 library
@@ -52,7 +53,7 @@ public class HDF5LibraryException extends HDF5Exception {
this.majorErrorNumber = _getMajorErrorNumber();
this.minorErrorNumber = _getMinorErrorNumber();
- detailMessage = getMinorError(minorErrorNumber);
+ detailMessage = getMinorError(minorErrorNumber);
}
/**
@@ -62,7 +63,8 @@ public class HDF5LibraryException extends HDF5Exception {
* @param s
* the detail message.
*/
- public HDF5LibraryException(String s) {
+ public HDF5LibraryException(String s)
+ {
super(s);
// this code forces the loading of the HDF-5 library
// to assure that the native methods are available
@@ -81,10 +83,7 @@ public class HDF5LibraryException extends HDF5Exception {
*
* @return the major error number
*/
- public long getMajorErrorNumber()
- {
- return majorErrorNumber;
- }
+ public long getMajorErrorNumber() { return majorErrorNumber; }
private native long _getMajorErrorNumber();
/**
@@ -93,10 +92,7 @@ public class HDF5LibraryException extends HDF5Exception {
*
* @return the minor error number
*/
- public long getMinorErrorNumber()
- {
- return minorErrorNumber;
- }
+ public long getMinorErrorNumber() { return minorErrorNumber; }
private native long _getMinorErrorNumber();
/**
@@ -109,7 +105,8 @@ public class HDF5LibraryException extends HDF5Exception {
*
* @return the string of the minor error
*/
- public String getMinorError(long err_code) {
+ public String getMinorError(long err_code)
+ {
if (err_code == 0) {
return "special zero no error";
}
@@ -356,9 +353,10 @@ public class HDF5LibraryException extends HDF5Exception {
* stack, and and the Java stack trace to the standard error stream.
*/
@Override
- public void printStackTrace() {
+ public void printStackTrace()
+ {
System.err.println(this);
- printStackTrace0(null); // the HDF-5 Library error stack
+ printStackTrace0(null); // the HDF-5 Library error stack
super.printStackTrace(); // the Java stack trace
}
@@ -369,21 +367,21 @@ public class HDF5LibraryException extends HDF5Exception {
* @param f
* the file print stream.
*/
- public void printStackTrace(java.io.File f) {
+ public void printStackTrace(java.io.File f)
+ {
if ((f == null) || !f.exists() || f.isDirectory() || !f.canWrite()) {
printStackTrace();
}
else {
try {
java.io.FileOutputStream o = new java.io.FileOutputStream(f);
- java.io.PrintWriter p = new java.io.PrintWriter(o);
+ java.io.PrintWriter p = new java.io.PrintWriter(o);
p.println(this);
p.close();
}
catch (Exception ex) {
System.err.println(this);
- }
- ;
+ };
// the HDF-5 Library error stack
printStackTrace0(f.getPath());
super.printStackTrace(); // the Java stack trace
@@ -395,5 +393,4 @@ public class HDF5LibraryException extends HDF5Exception {
* and error stack.
*/
private native void printStackTrace0(String s);
-
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5LowLevelIOException.java b/java/src/hdf/hdf5lib/exceptions/HDF5LowLevelIOException.java
index d61f4e9..fef5721 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5LowLevelIOException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5LowLevelIOException.java
@@ -24,9 +24,7 @@ public class HDF5LowLevelIOException extends HDF5LibraryException {
* Constructs an <code>HDF5LowLevelIOException</code> with no specified
* detail message.
*/
- public HDF5LowLevelIOException() {
- super();
- }
+ public HDF5LowLevelIOException() { super(); }
/**
* Constructs an <code>HDF5LowLevelIOException</code> with the specified
@@ -35,7 +33,5 @@ public class HDF5LowLevelIOException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5LowLevelIOException(String s) {
- super(s);
- }
+ public HDF5LowLevelIOException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5MetaDataCacheException.java b/java/src/hdf/hdf5lib/exceptions/HDF5MetaDataCacheException.java
index 3b64b15..4f00006 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5MetaDataCacheException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5MetaDataCacheException.java
@@ -24,9 +24,7 @@ public class HDF5MetaDataCacheException extends HDF5LibraryException {
* Constructs an <code>HDF5MetaDataCacheException</code> with no specified
* detail message.
*/
- public HDF5MetaDataCacheException() {
- super();
- }
+ public HDF5MetaDataCacheException() { super(); }
/**
* Constructs an <code>HDF5MetaDataCacheException</code> with the specified
@@ -35,7 +33,5 @@ public class HDF5MetaDataCacheException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5MetaDataCacheException(String s) {
- super(s);
- }
+ public HDF5MetaDataCacheException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5ObjectHeaderException.java b/java/src/hdf/hdf5lib/exceptions/HDF5ObjectHeaderException.java
index b9f40f8..9675354 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5ObjectHeaderException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5ObjectHeaderException.java
@@ -24,9 +24,7 @@ public class HDF5ObjectHeaderException extends HDF5LibraryException {
* Constructs an <code>HDF5ObjectHeaderException</code> with no specified
* detail message.
*/
- public HDF5ObjectHeaderException() {
- super();
- }
+ public HDF5ObjectHeaderException() { super(); }
/**
* Constructs an <code>HDF5ObjectHeaderException</code> with the specified
@@ -35,7 +33,5 @@ public class HDF5ObjectHeaderException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5ObjectHeaderException(String s) {
- super(s);
- }
+ public HDF5ObjectHeaderException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5PropertyListInterfaceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5PropertyListInterfaceException.java
index d2a20e0..66f0bd1 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5PropertyListInterfaceException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5PropertyListInterfaceException.java
@@ -24,9 +24,7 @@ public class HDF5PropertyListInterfaceException extends HDF5LibraryException {
* Constructs an <code>HDF5PropertyListInterfaceException</code> with no
* specified detail message.
*/
- public HDF5PropertyListInterfaceException() {
- super();
- }
+ public HDF5PropertyListInterfaceException() { super(); }
/**
* Constructs an <code>HDF5PropertyListInterfaceException</code> with the
@@ -35,7 +33,5 @@ public class HDF5PropertyListInterfaceException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5PropertyListInterfaceException(String s) {
- super(s);
- }
+ public HDF5PropertyListInterfaceException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java
index 0701244..4feaba7 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java
@@ -24,9 +24,7 @@ public class HDF5ReferenceException extends HDF5LibraryException {
* Constructs an <code>HDF5ReferenceException</code> with no specified
* detail message.
*/
- public HDF5ReferenceException() {
- super();
- }
+ public HDF5ReferenceException() { super(); }
/**
* Constructs an <code>HDF5ReferenceException</code> with the specified
@@ -35,7 +33,5 @@ public class HDF5ReferenceException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5ReferenceException(String s) {
- super(s);
- }
+ public HDF5ReferenceException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.java b/java/src/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.java
index ad052b5..1a007e7 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.java
@@ -24,9 +24,7 @@ public class HDF5ResourceUnavailableException extends HDF5LibraryException {
* Constructs an <code>HDF5ResourceUnavailableException</code> with no
* specified detail message.
*/
- public HDF5ResourceUnavailableException() {
- super();
- }
+ public HDF5ResourceUnavailableException() { super(); }
/**
* Constructs an <code>HDF5FunctionArgumentException</code> with the
@@ -35,7 +33,5 @@ public class HDF5ResourceUnavailableException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5ResourceUnavailableException(String s) {
- super(s);
- }
+ public HDF5ResourceUnavailableException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5SymbolTableException.java b/java/src/hdf/hdf5lib/exceptions/HDF5SymbolTableException.java
index ba9150f..4fb8c2e 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5SymbolTableException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5SymbolTableException.java
@@ -24,9 +24,7 @@ public class HDF5SymbolTableException extends HDF5LibraryException {
* Constructs an <code>HDF5SymbolTableException</code> with no specified
* detail message.
*/
- public HDF5SymbolTableException() {
- super();
- }
+ public HDF5SymbolTableException() { super(); }
/**
* Constructs an <code>HDF5SymbolTableException</code> with the specified
@@ -35,7 +33,5 @@ public class HDF5SymbolTableException extends HDF5LibraryException {
* @param s
* the detail message.
*/
- public HDF5SymbolTableException(String s) {
- super(s);
- }
+ public HDF5SymbolTableException(String s) { super(s); }
}
diff --git a/java/src/hdf/hdf5lib/package-info.java b/java/src/hdf/hdf5lib/package-info.java
index 2863f5a..c04b862 100644
--- a/java/src/hdf/hdf5lib/package-info.java
+++ b/java/src/hdf/hdf5lib/package-info.java
@@ -11,11 +11,11 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
/**
* This package is the Java interface for the HDF5 library.
* <p>
- * This code is the called by Java programs to access the entry points of the HDF5 library. Each routine wraps a single
+ * This code is the called by Java programs to access the entry points of the HDF5 library. Each routine wraps
+ a single
* HDF5 entry point, generally with the arguments and return codes analogous to the C interface.
* <p>
* For details of the HDF5 library, see the HDF5 Documentation at:
@@ -25,7 +25,8 @@
* <b>Mapping of arguments for Java</b>
*
* <p>
- * In general, arguments to the HDF Java API are straightforward translations from the 'C' API described in the HDF
+ * In general, arguments to the HDF Java API are straightforward translations from the 'C' API described in
+ the HDF
* Reference Manual.
*
* <table border=1>
@@ -66,16 +67,21 @@
* </table>
* <b>General Rules for Passing Arguments and Results</b>
* <p>
- * In general, arguments passed <b>IN</b> to Java are the analogous basic types, as above. The exception is for arrays,
+ * In general, arguments passed <b>IN</b> to Java are the analogous basic types, as above. The exception is
+ for arrays,
* which are discussed below.
* <p>
- * The <i>return value</i> of Java methods is also the analogous type, as above. A major exception to that rule is that
- * all HDF functions that return SUCCEED/FAIL are declared <i>boolean</i> in the Java version, rather than <i>int</i> as
- * in the C. Functions that return a value or else FAIL are declared the equivalent to the C function. However, in most
+ * The <i>return value</i> of Java methods is also the analogous type, as above. A major exception to that
+ rule is that
+ * all HDF functions that return SUCCEED/FAIL are declared <i>boolean</i> in the Java version, rather than
+ <i>int</i> as
+ * in the C. Functions that return a value or else FAIL are declared the equivalent to the C function.
+ However, in most
* cases the Java method will raise an exception instead of returning an error code.
* See <a href="#ERRORS">Errors and Exceptions</a> below.
* <p>
- * Java does not support pass by reference of arguments, so arguments that are returned through <b>OUT</b> parameters
+ * Java does not support pass by reference of arguments, so arguments that are returned through <b>OUT</b>
+ parameters
* must be wrapped in an object or array. The Java API for HDF consistently wraps arguments in arrays.
* <p>
* For instance, a function that returns two integers is declared:
@@ -97,11 +103,13 @@
* </pre>
*
* <p>
- * All the routines where this convention is used will have specific documentation of the details, given below.
+ * All the routines where this convention is used will have specific documentation of the details, given
+ below.
* <p>
* <b>Arrays</b>
* <p>
- * HDF5 needs to read and write multi-dimensional arrays of any number type (and records). The HDF5 API describes the
+ * HDF5 needs to read and write multi-dimensional arrays of any number type (and records). The HDF5 API
+ describes the
* layout of the source and destination, and the data for the array passed as a block of bytes, for instance,
*
* <pre>
@@ -109,39 +117,53 @@
* </pre>
*
* <p>
- * where ``void *'' means that the data may be any valid numeric type, and is a contiguous block of bytes that is the
- * data for a multi-dimensional array. The other parameters describe the dimensions, rank, and datatype of the array on
+ * where ``void *'' means that the data may be any valid numeric type, and is a contiguous block of bytes that
+ is the
+ * data for a multi-dimensional array. The other parameters describe the dimensions, rank, and datatype of the
+ array on
* disk (source) and in memory (destination).
* <p>
- * For Java, this ``ANY'' is a problem, as the type of data must always be declared. Furthermore, multidimensional
- * arrays are definitely <i>not</i> laid out contiguously in memory. It would be infeasible to declare a separate
+ * For Java, this ``ANY'' is a problem, as the type of data must always be declared. Furthermore,
+ multidimensional
+ * arrays are definitely <i>not</i> laid out contiguously in memory. It would be infeasible to declare a
+ separate
* routine for every combination of number type and dimensionality. For that reason, the
- * <a href="./hdf.hdf5lib.HDFArray.html"><b>HDFArray</b></a> class is used to discover the type, shape, and size of the
- * data array at run time, and to convert to and from a contiguous array of bytes in synchronized static native C order.
- * <p>
- * The upshot is that any Java array of numbers (either primitive or sub-classes of type <b>Number</b>) can be passed as
- * an ``Object'', and the Java API will translate to and from the appropriate packed array of bytes needed by the C
+ * <a href="./hdf.hdf5lib.HDFArray.html"><b>HDFArray</b></a> class is used to discover the type, shape, and
+ size of the
+ * data array at run time, and to convert to and from a contiguous array of bytes in synchronized static
+ native C order.
+ * <p>
+ * The upshot is that any Java array of numbers (either primitive or sub-classes of type <b>Number</b>) can be
+ passed as
+ * an ``Object'', and the Java API will translate to and from the appropriate packed array of bytes needed by
+ the C
* library. So the function above would be declared:
*
* <pre>
- * public synchronized static native int H5Dread(long fid, long filetype, long memtype, long memspace, Object data);
+ * public synchronized static native int H5Dread(long fid, long filetype, long memtype, long memspace, Object
+ data);
* </pre>
* OPEN_IDS.addElement(id);
- * and the parameter <i>data</i> can be any multi-dimensional array of numbers, such as float[][], or int[][][], or
+ * and the parameter <i>data</i> can be any multi-dimensional array of numbers, such as float[][], or
+ int[][][], or
* Double[][].
* <p>
* <b>HDF-5 Constants</b>
* <p>
- * The HDF-5 API defines a set of constants and enumerated values. Most of these values are available to Java programs
- * via the class <a href="./hdf.hdf5lib.HDF5Constants.html"> <b>HDF5Constants</b></a>. For example, the parameters for
+ * The HDF-5 API defines a set of constants and enumerated values. Most of these values are available to Java
+ programs
+ * via the class <a href="./hdf.hdf5lib.HDF5Constants.html"> <b>HDF5Constants</b></a>. For example, the
+ parameters for
* the h5open() call include two numeric values, <b><i>HDFConstants.H5F_ACC_RDWR</i></b> and
* <b><i>HDF5Constants.H5P_DEFAULT</i></b>. As would be expected, these numbers correspond to the C constants
* <b><i>H5F_ACC_RDWR</i></b> and <b><i>H5P_DEFAULT</i></b>.
* <p>
- * The HDF-5 API defines a set of values that describe number types and sizes, such as "H5T_NATIVE_INT" and "hsize_t".
+ * The HDF-5 API defines a set of values that describe number types and sizes, such as "H5T_NATIVE_INT" and
+ "hsize_t".
* These values are determined at run time by the HDF-5 C library. To support these parameters, the Java class
- * <a href="./hdf.hdf5lib.HDF5CDataTypes.html"> <b>HDF5CDataTypes</b></a> looks up the values when initiated. The values
+ * <a href="./hdf.hdf5lib.HDF5CDataTypes.html"> <b>HDF5CDataTypes</b></a> looks up the values when initiated.
+ The values
* can be accessed as public variables of the Java class, such as:
*
* <pre>
@@ -153,22 +175,31 @@
* <p>
* <b>Error handling and Exceptions</b>
* <p>
- * The HDF5 error API (H5E) manages the behavior of the error stack in the HDF-5 library. This API is available from the
- * JHI5. Errors are converted into Java exceptions. This is totally different from the C interface, but is very natural
+ * The HDF5 error API (H5E) manages the behavior of the error stack in the HDF-5 library. This API is
+ available from the
+ * JHI5. Errors are converted into Java exceptions. This is totally different from the C interface, but is
+ very natural
* for Java programming.
* <p>
* The exceptions of the JHI5 are organized as sub-classes of the class
- * <a href="./hdf.hdf5lib.exceptions.HDF5Exception.html"> <b>HDF5Exception</b></a>. There are two subclasses of
- * <b>HDF5Exception</b>, <a href="./hdf.hdf5lib.exceptions.HDF5LibraryException.html"> <b>HDF5LibraryException</b></a>
- * and <a href="./hdf.hdf5lib.exceptions.HDF5JavaException.html"> <b>HDF5JavaException</b></a>. The sub-classes of the
- * former represent errors from the HDF-5 C library, while sub-classes of the latter represent errors in the JHI5
+ * <a href="./hdf.hdf5lib.exceptions.HDF5Exception.html"> <b>HDF5Exception</b></a>. There are two subclasses
+ of
+ * <b>HDF5Exception</b>, <a href="./hdf.hdf5lib.exceptions.HDF5LibraryException.html">
+ <b>HDF5LibraryException</b></a>
+ * and <a href="./hdf.hdf5lib.exceptions.HDF5JavaException.html"> <b>HDF5JavaException</b></a>. The
+ sub-classes of the
+ * former represent errors from the HDF-5 C library, while sub-classes of the latter represent errors in the
+ JHI5
* wrapper and support code.
* <p>
- * The super-class <b><i>HDF5LibraryException</i></b> implements the method '<b><i>printStackTrace()</i></b>', which
- * prints out the HDF-5 error stack, as described in the HDF-5 C API <i><b>H5Eprint()</b>.</i> This may be used by Java
+ * The super-class <b><i>HDF5LibraryException</i></b> implements the method '<b><i>printStackTrace()</i></b>',
+ which
+ * prints out the HDF-5 error stack, as described in the HDF-5 C API <i><b>H5Eprint()</b>.</i> This may be
+ used by Java
* exception handlers to print out the HDF-5 error stack.
* <hr>
*
* <b>See also: <a href="http://hdfgroup.org/HDF5/"> http://hdfgroup.org/HDF5"</a></b>
- **/
+ *
+ */
package hdf.hdf5lib;
diff --git a/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java b/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java
index cf84532..a224124 100644
--- a/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java
@@ -18,7 +18,7 @@ import java.io.Serializable;
* Information struct for H5Pget_mdc_config/H5Pset_mdc_config
*
*/
-public class H5AC_cache_config_t implements Serializable{
+public class H5AC_cache_config_t implements Serializable {
private static final long serialVersionUID = -6748085696476149972L;
// general configuration fields
/**
@@ -27,7 +27,7 @@ public class H5AC_cache_config_t implements Serializable{
* H5AC_cache_config_t passed to the cache must have a known
* version number, or an error will be flagged.
*/
- public int version;
+ public int version;
/**
* rpt_fcn_enabled: Boolean field used to enable and disable the default
* reporting function. This function is invoked every time the
@@ -35,80 +35,80 @@ public class H5AC_cache_config_t implements Serializable{
*
* This is a debugging function, and should normally be turned off.
*/
- public boolean rpt_fcn_enabled;
+ public boolean rpt_fcn_enabled;
/**
* open_trace_file: Boolean field indicating whether the trace_file_name
* field should be used to open a trace file for the cache.
*
* *** DEPRECATED *** Use H5Fstart/stop logging functions instead
*/
- public boolean open_trace_file;
+ public boolean open_trace_file;
/**
* close_trace_file: Boolean field indicating whether the current trace
* file (if any) should be closed.
*
* *** DEPRECATED *** Use H5Fstart/stop logging functions instead
*/
- public boolean close_trace_file;
+ public boolean close_trace_file;
/**
* trace_file_name: Full path of the trace file to be opened if the
* open_trace_file field is TRUE.
*
* *** DEPRECATED *** Use H5Fstart/stop logging functions instead
*/
- public String trace_file_name;
+ public String trace_file_name;
/**
* evictions_enabled: Boolean field used to either report the current
* evictions enabled status of the cache, or to set the cache's
* evictions enabled status.
*/
- public boolean evictions_enabled;
+ public boolean evictions_enabled;
/**
* set_initial_size: Boolean flag indicating whether the size of the
* initial size of the cache is to be set to the value given in
* the initial_size field. If set_initial_size is FALSE, the
* initial_size field is ignored.
*/
- public boolean set_initial_size;
+ public boolean set_initial_size;
/**
* initial_size: If enabled, this field contain the size the cache is
* to be set to upon receipt of this structure. Needless to say,
* initial_size must lie in the closed interval [min_size, max_size].
*/
- public long initial_size;
+ public long initial_size;
/**
* min_clean_fraction: double in the range 0 to 1 indicating the fraction
* of the cache that is to be kept clean. This field is only used
* in parallel mode. Typical values are 0.1 to 0.5.
*/
- public double min_clean_fraction;
+ public double min_clean_fraction;
/**
* max_size: Maximum size to which the cache can be adjusted. The
* supplied value must fall in the closed interval
* [MIN_MAX_CACHE_SIZE, MAX_MAX_CACHE_SIZE]. Also, max_size must
* be greater than or equal to min_size.
*/
- public long max_size;
+ public long max_size;
/**
* min_size: Minimum size to which the cache can be adjusted. The
* supplied value must fall in the closed interval
* [H5C__MIN_MAX_CACHE_SIZE, H5C__MAX_MAX_CACHE_SIZE]. Also, min_size
* must be less than or equal to max_size.
*/
- public long min_size;
+ public long min_size;
/**
* epoch_length: Number of accesses on the cache over which to collect
* hit rate stats before running the automatic cache resize code,
* if it is enabled.
*/
- public long epoch_length;
+ public long epoch_length;
// size increase control fields
/**
* incr_mode: Instance of the H5C_cache_incr_mode enumerated type whose
* value indicates how we determine whether the cache size should be
* increased. At present there are two possible values.
*/
- public int incr_mode;
+ public int incr_mode;
/**
* lower_hr_threshold: Lower hit rate threshold. If the increment mode
* (incr_mode) is H5C_incr__threshold and the hit rate drops below the
@@ -117,105 +117,106 @@ public class H5AC_cache_config_t implements Serializable{
* max_size, and that the increment may be further restricted by the
* max_increment field if it is enabled.
*/
- public double lower_hr_threshold;
+ public double lower_hr_threshold;
/**
* increment: Double containing the multiplier used to derive the new
* cache size from the old if a cache size increment is triggered.
* The increment must be greater than 1.0, and should not exceed 2.0.
*/
- public double increment;
+ public double increment;
/**
* apply_max_increment: Boolean flag indicating whether the max_increment
* field should be used to limit the maximum cache size increment.
*/
- public boolean apply_max_increment;
+ public boolean apply_max_increment;
/**
* max_increment: If enabled by the apply_max_increment field described
* above, this field contains the maximum number of bytes by which the
* cache size can be increased in a single re-size.
*/
- public long max_increment;
+ public long max_increment;
/**
* flash_incr_mode: Instance of the H5C_cache_flash_incr_mode enumerated
* type whose value indicates whether and by which algorithm we should
* make flash increases in the size of the cache to accommodate insertion
* of large entries and large increases in the size of a single entry.
*/
- public int flash_incr_mode;
+ public int flash_incr_mode;
/**
* flash_multiple: Double containing the multiple described above in the
* H5C_flash_incr__add_space section of the discussion of the
* flash_incr_mode section. This field is ignored unless flash_incr_mode
* is H5C_flash_incr__add_space.
*/
- public double flash_multiple;
+ public double flash_multiple;
/**
* flash_threshold: Double containing the factor by which current max cache
* size is multiplied to obtain the size threshold for the add_space flash
* increment algorithm. The field is ignored unless flash_incr_mode is
* H5C_flash_incr__add_space.
*/
- public double flash_threshold;
+ public double flash_threshold;
// size decrease control fields
/**
* decr_mode: Instance of the H5C_cache_decr_mode enumerated type whose
* value indicates how we determine whether the cache size should be
* decreased. At present there are four possibilities.
*/
- public int decr_mode;
+ public int decr_mode;
/**
* upper_hr_threshold: Upper hit rate threshold. The use of this field
* varies according to the current decr_mode.
*/
- public double upper_hr_threshold;
+ public double upper_hr_threshold;
/**
* decrement: This field is only used when the decr_mode is
* H5C_decr__threshold.
*/
- public double decrement;
+ public double decrement;
/**
* apply_max_decrement: Boolean flag used to determine whether decrements
* in cache size are to be limited by the max_decrement field.
*/
- public boolean apply_max_decrement;
+ public boolean apply_max_decrement;
/**
* max_decrement: Maximum number of bytes by which the cache size can be
* decreased in a single re-size. Note that decrements may also be
* restricted by the min_size of the cache, and (in age out modes) by
* the empty_reserve field.
*/
- public long max_decrement;
+ public long max_decrement;
/**
* epochs_before_eviction: Integer field used in H5C_decr__age_out and
* H5C_decr__age_out_with_threshold decrement modes.
*/
- public int epochs_before_eviction;
+ public int epochs_before_eviction;
/**
* apply_empty_reserve: Boolean field controlling whether the empty_reserve
* field is to be used in computing the new cache size when the
* decr_mode is H5C_decr__age_out or H5C_decr__age_out_with_threshold.
*/
- public boolean apply_empty_reserve;
+ public boolean apply_empty_reserve;
/**
* empty_reserve: To avoid a constant racheting down of cache size by small
* amounts in the H5C_decr__age_out and H5C_decr__age_out_with_threshold
* modes, this field allows one to require that any cache size
* reductions leave the specified fraction of unused space in the cache.
*/
- public double empty_reserve;
+ public double empty_reserve;
// parallel configuration fields
/**
* dirty_bytes_threshold: Threshold of dirty byte creation used to
* synchronize updates between caches.
*/
- public long dirty_bytes_threshold;
+ public long dirty_bytes_threshold;
/**
* metadata_write_strategy: Integer field containing a code indicating the
* desired metadata write strategy.
*/
- public int metadata_write_strategy;
+ public int metadata_write_strategy;
- /** H5AC_cache_config_t is a public structure intended for use in public APIs.
+ /**
+ * H5AC_cache_config_t is a public structure intended for use in public APIs.
* At least in its initial incarnation, it is basically a copy of struct
* H5C_auto_size_ctl_t, minus the report_fcn field, and plus the
* dirty_bytes_threshold field.
@@ -283,46 +284,47 @@ public class H5AC_cache_config_t implements Serializable{
* synchronize updates between caches.
* @param metadata_write_strategy: Integer field containing a code indicating the
* desired metadata write strategy.
- */
- public H5AC_cache_config_t (int version, boolean rpt_fcn_enabled, boolean open_trace_file,
- boolean close_trace_file, String trace_file_name, boolean evictions_enabled,
- boolean set_initial_size, long initial_size, double min_clean_fraction, long max_size,
- long min_size, long epoch_length, int incr_mode, double lower_hr_threshold,
- double increment, boolean apply_max_increment, long max_increment, int flash_incr_mode,
- double flash_multiple, double flash_threshold, int decr_mode, double upper_hr_threshold,
- double decrement, boolean apply_max_decrement, long max_decrement,
- int epochs_before_eviction, boolean apply_empty_reserve, double empty_reserve,
- long dirty_bytes_threshold, int metadata_write_strategy)
+ */
+ public H5AC_cache_config_t(int version, boolean rpt_fcn_enabled, boolean open_trace_file,
+ boolean close_trace_file, String trace_file_name, boolean evictions_enabled,
+ boolean set_initial_size, long initial_size, double min_clean_fraction,
+ long max_size, long min_size, long epoch_length, int incr_mode,
+ double lower_hr_threshold, double increment, boolean apply_max_increment,
+ long max_increment, int flash_incr_mode, double flash_multiple,
+ double flash_threshold, int decr_mode, double upper_hr_threshold,
+ double decrement, boolean apply_max_decrement, long max_decrement,
+ int epochs_before_eviction, boolean apply_empty_reserve, double empty_reserve,
+ long dirty_bytes_threshold, int metadata_write_strategy)
{
- this.version = version;
- this.rpt_fcn_enabled = rpt_fcn_enabled;
- this.open_trace_file = open_trace_file;
- this.close_trace_file = close_trace_file;
- this.trace_file_name = trace_file_name;
- this.evictions_enabled = evictions_enabled;
- this.set_initial_size = set_initial_size;
- this.initial_size = initial_size;
- this.min_clean_fraction = min_clean_fraction;
- this.max_size = max_size;
- this.min_size = min_size;
- this.epoch_length = epoch_length;
- this.incr_mode = incr_mode;
- this.lower_hr_threshold = lower_hr_threshold;
- this.increment = increment;
- this.apply_max_increment = apply_max_increment;
- this.max_increment = flash_incr_mode;
- this.flash_incr_mode = flash_incr_mode;
- this.flash_multiple = flash_multiple;
- this.flash_threshold = flash_threshold;
- this.decr_mode = decr_mode;
- this.upper_hr_threshold = upper_hr_threshold;
- this.decrement = decrement;
- this.apply_max_decrement = apply_max_decrement;
- this.max_decrement = max_decrement;
- this.epochs_before_eviction = epochs_before_eviction;
- this.apply_empty_reserve = apply_empty_reserve;
- this.empty_reserve = empty_reserve;
- this.dirty_bytes_threshold = dirty_bytes_threshold;
+ this.version = version;
+ this.rpt_fcn_enabled = rpt_fcn_enabled;
+ this.open_trace_file = open_trace_file;
+ this.close_trace_file = close_trace_file;
+ this.trace_file_name = trace_file_name;
+ this.evictions_enabled = evictions_enabled;
+ this.set_initial_size = set_initial_size;
+ this.initial_size = initial_size;
+ this.min_clean_fraction = min_clean_fraction;
+ this.max_size = max_size;
+ this.min_size = min_size;
+ this.epoch_length = epoch_length;
+ this.incr_mode = incr_mode;
+ this.lower_hr_threshold = lower_hr_threshold;
+ this.increment = increment;
+ this.apply_max_increment = apply_max_increment;
+ this.max_increment = flash_incr_mode;
+ this.flash_incr_mode = flash_incr_mode;
+ this.flash_multiple = flash_multiple;
+ this.flash_threshold = flash_threshold;
+ this.decr_mode = decr_mode;
+ this.upper_hr_threshold = upper_hr_threshold;
+ this.decrement = decrement;
+ this.apply_max_decrement = apply_max_decrement;
+ this.max_decrement = max_decrement;
+ this.epochs_before_eviction = epochs_before_eviction;
+ this.apply_empty_reserve = apply_empty_reserve;
+ this.empty_reserve = empty_reserve;
+ this.dirty_bytes_threshold = dirty_bytes_threshold;
this.metadata_write_strategy = metadata_write_strategy;
}
}
diff --git a/java/src/hdf/hdf5lib/structs/H5A_info_t.java b/java/src/hdf/hdf5lib/structs/H5A_info_t.java
index f2c10f0..364e480 100644
--- a/java/src/hdf/hdf5lib/structs/H5A_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5A_info_t.java
@@ -18,7 +18,7 @@ import java.io.Serializable;
* Information struct for Attribute (For H5Aget_info/H5Aget_info_by_idx/H5Aget_info_by_name)
*
*/
-public class H5A_info_t implements Serializable{
+public class H5A_info_t implements Serializable {
private static final long serialVersionUID = 2791443594041667613L;
/** Indicate if creation order is valid */
public boolean corder_valid;
@@ -29,10 +29,11 @@ public class H5A_info_t implements Serializable{
/** Size of raw data */
public long data_size;
- H5A_info_t(boolean corder_valid, long corder, int cset, long data_size) {
+ H5A_info_t(boolean corder_valid, long corder, int cset, long data_size)
+ {
this.corder_valid = corder_valid;
- this.corder = corder;
- this.cset = cset;
- this.data_size = data_size;
+ this.corder = corder;
+ this.cset = cset;
+ this.data_size = data_size;
}
}
diff --git a/java/src/hdf/hdf5lib/structs/H5E_error2_t.java b/java/src/hdf/hdf5lib/structs/H5E_error2_t.java
index 5981fc7..1be836f 100644
--- a/java/src/hdf/hdf5lib/structs/H5E_error2_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5E_error2_t.java
@@ -18,16 +18,16 @@ import java.io.Serializable;
* Information struct for Attribute (For H5Ewalk)
*
*/
-public class H5E_error2_t implements Serializable{
+public class H5E_error2_t implements Serializable {
private static final long serialVersionUID = 279144359041667613L;
/** class ID */
- public long cls_id;
+ public long cls_id;
/** major error ID */
- public long maj_num;
+ public long maj_num;
/** minor error number */
- public long min_num;
+ public long min_num;
/** line in file where error occurs */
- public int line;
+ public int line;
/** function in which error occurred */
public String func_name;
/** file in which error occurred */
@@ -35,13 +35,15 @@ public class H5E_error2_t implements Serializable{
/** optional supplied description */
public String desc;
- H5E_error2_t(long cls_id, long maj_num, long min_num, int line, String func_name, String file_name, String desc) {
- this.cls_id = cls_id;
- this.maj_num = maj_num;
- this.min_num = min_num;
- this.line = line;
+ H5E_error2_t(long cls_id, long maj_num, long min_num, int line, String func_name, String file_name,
+ String desc)
+ {
+ this.cls_id = cls_id;
+ this.maj_num = maj_num;
+ this.min_num = min_num;
+ this.line = line;
this.func_name = func_name;
this.file_name = file_name;
- this.desc = desc;
+ this.desc = desc;
}
}
diff --git a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
index 95a9254..181d681 100644
--- a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
@@ -26,17 +26,17 @@ public class H5FD_hdfs_fapl_t implements Serializable {
private static final long serialVersionUID = 2072473407027648309L;
/** Version number of the H5FD_hdfs_fapl_t structure. */
- private int version;
+ private int version;
/** Name of "Name Node" to access as the HDFS server. */
private String namenode_name;
/** Port number to use to connect with Name Node. */
- private int namenode_port;
+ private int namenode_port;
/** Username to use when accessing file. */
private String user_name;
/** Path to the location of the Kerberos authentication cache. */
private String kerberos_ticket_cache;
/** Size (in bytes) of the file read stream buffer. */
- private int stream_buffer_size;
+ private int stream_buffer_size;
/**
* Create a fapl_t structure with the specified components.
@@ -51,23 +51,20 @@ public class H5FD_hdfs_fapl_t implements Serializable {
* @param stream_buffer_size
* Size (in bytes) of the file read stream buffer.
*/
- public H5FD_hdfs_fapl_t(
- String namenode_name,
- int namenode_port,
- String user_name,
- String kerberos_ticket_cache,
- int stream_buffer_size)
+ public H5FD_hdfs_fapl_t(String namenode_name, int namenode_port, String user_name,
+ String kerberos_ticket_cache, int stream_buffer_size)
{
- this.version = 1;
- this.namenode_name = namenode_name;
- this.namenode_port = namenode_port;
- this.user_name = user_name;
- this.kerberos_ticket_cache = kerberos_ticket_cache;
- this.stream_buffer_size = stream_buffer_size;
+ this.version = 1;
+ this.namenode_name = namenode_name;
+ this.namenode_port = namenode_port;
+ this.user_name = user_name;
+ this.kerberos_ticket_cache = kerberos_ticket_cache;
+ this.stream_buffer_size = stream_buffer_size;
}
@Override
- public boolean equals(Object o) {
+ public boolean equals(Object o)
+ {
if (o == null)
return false;
if (!(o instanceof H5FD_hdfs_fapl_t))
@@ -90,7 +87,8 @@ public class H5FD_hdfs_fapl_t implements Serializable {
}
@Override
- public int hashCode() {
+ public int hashCode()
+ {
/* this is a _very bad_ hash algorithm for purposes of hashing! */
/* implemented to satisfy the "contract" regarding equality */
int k = (int)this.version;
@@ -103,15 +101,11 @@ public class H5FD_hdfs_fapl_t implements Serializable {
}
@Override
- public String toString() {
- return "H5FD_hdfs_fapl_t (Version: " + this.version + ") {" +
- "\n namenode_name: '" + this.namenode_name +
- "'\n namenode_port: " + this.namenode_port +
- "\n user_name: '" + this.user_name +
- "'\n kerberos_ticket_cache: '" + this.kerberos_ticket_cache +
- "'\n stream_buffer_size: " + this.stream_buffer_size +
- "\n}\n";
+ public String toString()
+ {
+ return "H5FD_hdfs_fapl_t (Version: " + this.version + ") {"
+ + "\n namenode_name: '" + this.namenode_name + "'\n namenode_port: " + this.namenode_port +
+ "\n user_name: '" + this.user_name + "'\n kerberos_ticket_cache: '" +
+ this.kerberos_ticket_cache + "'\n stream_buffer_size: " + this.stream_buffer_size + "\n}\n";
}
}
-
-
diff --git a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
index ad02979..67c2463 100644
--- a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
@@ -46,7 +46,7 @@ public class H5FD_ros3_fapl_t implements Serializable {
private static final long serialVersionUID = 8985533001471224030L;
/** Version number of the H5FD_ros3_fapl_t structure */
- private int version;
+ private int version;
/** Flag TRUE or FALSE whether or not requests are to be authenticated with the AWS4 algorithm. */
private boolean authenticate;
/** region "aws region" for authenticating request */
@@ -59,11 +59,12 @@ public class H5FD_ros3_fapl_t implements Serializable {
/**
* Create a "default" fapl_t structure, for anonymous access.
*/
- public H5FD_ros3_fapl_t () {
+ public H5FD_ros3_fapl_t()
+ {
/* H5FD_ros3_fapl_t("", "", ""); */ /* defer */
- this.version = 1;
+ this.version = 1;
this.aws_region = "";
- this.secret_id = "";
+ this.secret_id = "";
this.secret_key = "";
}
@@ -76,16 +77,18 @@ public class H5FD_ros3_fapl_t implements Serializable {
* @param id "secret id" or "access id" for authenticating request
* @param key "secret key" or "access key" for authenticating request
*/
- public H5FD_ros3_fapl_t (String region, String id, String key) {
- this.version = 1; /* must equal H5FD_CURR_ROS3_FAPL_T_VERSION */
- /* as found in H5FDros3.h */
+ public H5FD_ros3_fapl_t(String region, String id, String key)
+ {
+ this.version = 1; /* must equal H5FD_CURR_ROS3_FAPL_T_VERSION */
+ /* as found in H5FDros3.h */
this.aws_region = region;
this.secret_id = id;
this.secret_key = key;
}
@Override
- public boolean equals(Object o) {
+ public boolean equals(Object o)
+ {
if (o == null)
return false;
if (!(o instanceof H5FD_ros3_fapl_t))
@@ -104,7 +107,8 @@ public class H5FD_ros3_fapl_t implements Serializable {
}
@Override
- public int hashCode() {
+ public int hashCode()
+ {
/* this is a _very bad_ hash algorithm for purposes of hashing! */
/* implemented to satisfy the "contract" regarding equality */
int k = (int)this.version;
@@ -115,13 +119,10 @@ public class H5FD_ros3_fapl_t implements Serializable {
}
@Override
- public String toString() {
- return "H5FD_ros3_fapl_t (Version:" + this.version + ") {" +
- "\n aws_region : " + this.aws_region +
- "\n secret_id : " + this.secret_id +
- "\n secret_key : " + this.secret_key +
- "\n}\n";
+ public String toString()
+ {
+ return "H5FD_ros3_fapl_t (Version:" + this.version + ") {"
+ + "\n aws_region : " + this.aws_region + "\n secret_id : " + this.secret_id +
+ "\n secret_key : " + this.secret_key + "\n}\n";
}
}
-
-
diff --git a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java
index 78e6d6c..1961b16 100644
--- a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java
@@ -18,26 +18,26 @@ import java.io.Serializable;
* Information struct for object (for H5Fget_info)
*
*/
-public class H5F_info2_t implements Serializable{
+public class H5F_info2_t implements Serializable {
private static final long serialVersionUID = 4691681162544054518L;
/** Superblock version number */
- public int super_version;
+ public int super_version;
/** Superblock size */
- public long super_size;
+ public long super_size;
/** Superblock extension size */
- public long super_ext_size;
+ public long super_ext_size;
/** Version number of file free space management */
- public int free_version;
+ public int free_version;
/** Free space manager metadata size */
- public long free_meta_size;
+ public long free_meta_size;
/** Amount of free space in the file */
- public long free_tot_space;
+ public long free_tot_space;
/** Version number of shared object header info */
- public int sohm_version;
+ public int sohm_version;
/** Shared object header message header size */
- public long sohm_hdr_size;
+ public long sohm_hdr_size;
/** Shared object header message index and heap size */
- public H5_ih_info_t sohm_msgs_info;
+ public H5_ih_info_t sohm_msgs_info;
/**
* Constructor for current "global" information about file
@@ -51,18 +51,18 @@ public class H5F_info2_t implements Serializable{
* @param sohm_hdr_size: Shared object header message header size
* @param sohm_msgs_info: Shared object header message index and heap size
*/
- public H5F_info2_t (int super_version, long super_size, long super_ext_size,
- int free_version, long free_meta_size, long free_tot_space,
- int sohm_version, long sohm_hdr_size, H5_ih_info_t sohm_msgs_info)
+ public H5F_info2_t(int super_version, long super_size, long super_ext_size, int free_version,
+ long free_meta_size, long free_tot_space, int sohm_version, long sohm_hdr_size,
+ H5_ih_info_t sohm_msgs_info)
{
- this.super_version = super_version;
- this.super_size = super_size;
+ this.super_version = super_version;
+ this.super_size = super_size;
this.super_ext_size = super_ext_size;
- this.free_version = free_version;
+ this.free_version = free_version;
this.free_meta_size = free_meta_size;
this.free_tot_space = free_tot_space;
- this.sohm_version = sohm_version;
- this.sohm_hdr_size = sohm_hdr_size;
+ this.sohm_version = sohm_version;
+ this.sohm_hdr_size = sohm_hdr_size;
this.sohm_msgs_info = sohm_msgs_info;
}
}
diff --git a/java/src/hdf/hdf5lib/structs/H5G_info_t.java b/java/src/hdf/hdf5lib/structs/H5G_info_t.java
index e79f859..10ae76a 100644
--- a/java/src/hdf/hdf5lib/structs/H5G_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5G_info_t.java
@@ -18,7 +18,7 @@ import java.io.Serializable;
* Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx)
*
*/
-public class H5G_info_t implements Serializable{
+public class H5G_info_t implements Serializable {
private static final long serialVersionUID = -3746463015312132912L;
/** Type of storage for links in group */
public int storage_type;
diff --git a/java/src/hdf/hdf5lib/structs/H5L_info_t.java b/java/src/hdf/hdf5lib/structs/H5L_info_t.java
index a3011c0..38b64d6 100644
--- a/java/src/hdf/hdf5lib/structs/H5L_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5L_info_t.java
@@ -23,39 +23,37 @@ import hdf.hdf5lib.HDF5Constants;
public class H5L_info_t implements Serializable {
private static final long serialVersionUID = -4754320605310155033L;
/** Type of link */
- public int type;
+ public int type;
/** Indicate if creation order is valid */
- public boolean corder_valid;
+ public boolean corder_valid;
/** Creation order */
- public long corder;
+ public long corder;
/** Character set of link name */
- public int cset;
+ public int cset;
/** Character set of link name */
public H5O_token_t token;
/** Size of a soft link or user-defined link value */
- public long val_size;
+ public long val_size;
/** Constructor for using object token portion of C union */
- H5L_info_t (int type, boolean corder_valid, long corder,
- int cset, H5O_token_t token)
+ H5L_info_t(int type, boolean corder_valid, long corder, int cset, H5O_token_t token)
{
- this.type = type;
+ this.type = type;
this.corder_valid = corder_valid;
- this.corder = corder;
- this.cset = cset;
- this.token = token;
- this.val_size = -1;
+ this.corder = corder;
+ this.cset = cset;
+ this.token = token;
+ this.val_size = -1;
}
/** Constructor for using val_size portion of C union */
- H5L_info_t (int type, boolean corder_valid, long corder,
- int cset, long val_size)
+ H5L_info_t(int type, boolean corder_valid, long corder, int cset, long val_size)
{
- this.type = type;
+ this.type = type;
this.corder_valid = corder_valid;
- this.corder = corder;
- this.cset = cset;
- this.token = HDF5Constants.H5O_TOKEN_UNDEF;
- this.val_size = val_size;
+ this.corder = corder;
+ this.cset = cset;
+ this.token = HDF5Constants.H5O_TOKEN_UNDEF;
+ this.val_size = val_size;
}
}
diff --git a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java
index 2475dd9..16a0eae 100644
--- a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java
@@ -41,31 +41,31 @@ public class H5O_hdr_info_t implements Serializable {
/** Flags to indicate message type is shared in header */
public long mesg_shared;
- H5O_hdr_info_t (int version, int nmesgs, int nchunks, int flags,
- long space_total, long space_meta, long space_mesg, long space_free,
- long mesg_present, long mesg_shared)
+ H5O_hdr_info_t(int version, int nmesgs, int nchunks, int flags, long space_total, long space_meta,
+ long space_mesg, long space_free, long mesg_present, long mesg_shared)
{
- this.version = version;
- this.nmesgs = nmesgs;
- this.nchunks = nchunks;
- this.flags = flags;
- this.space_total = space_total;
- this.space_meta = space_meta;
- this.space_mesg = space_mesg;
- this.space_free = space_free;
+ this.version = version;
+ this.nmesgs = nmesgs;
+ this.nchunks = nchunks;
+ this.flags = flags;
+ this.space_total = space_total;
+ this.space_meta = space_meta;
+ this.space_mesg = space_mesg;
+ this.space_free = space_free;
this.mesg_present = mesg_present;
- this.mesg_shared = mesg_shared;
+ this.mesg_shared = mesg_shared;
}
@Override
- public boolean equals(Object o) {
+ public boolean equals(Object o)
+ {
if (this == o)
return true;
if (!(o instanceof H5O_hdr_info_t))
return false;
- H5O_hdr_info_t info = (H5O_hdr_info_t) o;
+ H5O_hdr_info_t info = (H5O_hdr_info_t)o;
if (this.version != info.version)
return false;
diff --git a/java/src/hdf/hdf5lib/structs/H5O_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_info_t.java
index d2208d2..011a88e 100644
--- a/java/src/hdf/hdf5lib/structs/H5O_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5O_info_t.java
@@ -21,25 +21,26 @@ import java.io.Serializable;
public class H5O_info_t implements Serializable {
private static final long serialVersionUID = 4691681163544054518L;
/** File number that object is located in */
- public long fileno;
+ public long fileno;
/** Object token in file */
public H5O_token_t token;
/** Basic object type (group, dataset, etc.) */
- public int type;
+ public int type;
/** Reference count of object */
- public int rc;
+ public int rc;
/** Access time */
- public long atime;
+ public long atime;
/** Modification time */
- public long mtime;
+ public long mtime;
/** Change time */
- public long ctime;
+ public long ctime;
/** Birth time */
- public long btime;
+ public long btime;
/** Number of attributes attached to object */
- public long num_attrs;
+ public long num_attrs;
- /** Constructor for data model information struct for objects
+ /**
+ * Constructor for data model information struct for objects
*
* @param fileno: File number that object is located in
* @param token: Object token in file
@@ -51,17 +52,17 @@ public class H5O_info_t implements Serializable {
* @param btime: Birth time
* @param num_attrs: Number of attributes attached to object
*/
- public H5O_info_t (long fileno, H5O_token_t token, int type,
- int rc, long atime, long mtime, long ctime, long btime, long num_attrs)
+ public H5O_info_t(long fileno, H5O_token_t token, int type, int rc, long atime, long mtime, long ctime,
+ long btime, long num_attrs)
{
- this.fileno = fileno;
- this.token = token;
- this.type = type;
- this.rc = rc;
- this.atime = atime;
- this.mtime = mtime;
- this.ctime = ctime;
- this.btime = btime;
+ this.fileno = fileno;
+ this.token = token;
+ this.type = type;
+ this.rc = rc;
+ this.atime = atime;
+ this.mtime = mtime;
+ this.ctime = ctime;
+ this.btime = btime;
this.num_attrs = num_attrs;
}
}
diff --git a/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java
index 70e5231..ec01b40 100644
--- a/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java
@@ -15,7 +15,8 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
/**
- * Information struct for native HDF5 object info, such as object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx).
+ * Information struct for native HDF5 object info, such as object header metadata (for
+ * H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx).
*
*/
public class H5O_native_info_t implements Serializable {
@@ -29,26 +30,26 @@ public class H5O_native_info_t implements Serializable {
/** v2 B-tree and heap for attributes */
public H5_ih_info_t attr_info;
- H5O_native_info_t (H5O_hdr_info_t oheader_info, H5_ih_info_t obj_info, H5_ih_info_t attr_info)
+ H5O_native_info_t(H5O_hdr_info_t oheader_info, H5_ih_info_t obj_info, H5_ih_info_t attr_info)
{
- this.hdr_info = oheader_info;
- this.obj_info = obj_info;
+ this.hdr_info = oheader_info;
+ this.obj_info = obj_info;
this.attr_info = attr_info;
}
@Override
- public boolean equals(Object o) {
+ public boolean equals(Object o)
+ {
if (this == o)
return true;
if (!(o instanceof H5O_native_info_t))
return false;
- H5O_native_info_t info = (H5O_native_info_t) o;
+ H5O_native_info_t info = (H5O_native_info_t)o;
- if (!this.hdr_info.equals(info.hdr_info)
- || !this.obj_info.equals(info.obj_info)
- || !this.attr_info.equals(info.attr_info))
+ if (!this.hdr_info.equals(info.hdr_info) || !this.obj_info.equals(info.obj_info) ||
+ !this.attr_info.equals(info.attr_info))
return false;
return true;
diff --git a/java/src/hdf/hdf5lib/structs/H5O_token_t.java b/java/src/hdf/hdf5lib/structs/H5O_token_t.java
index f0bb978..8f2b7e2 100644
--- a/java/src/hdf/hdf5lib/structs/H5O_token_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5O_token_t.java
@@ -30,28 +30,25 @@ public class H5O_token_t implements Serializable {
*/
public byte[] data;
- H5O_token_t (byte[] data) {
- this.data = data;
- }
+ H5O_token_t(byte[] data) { this.data = data; }
/**
* Check if token data is undefined
*
* @return true if token data is undefined
*/
- public boolean isUndefined() {
- return this.equals(HDF5Constants.H5O_TOKEN_UNDEF);
- }
+ public boolean isUndefined() { return this.equals(HDF5Constants.H5O_TOKEN_UNDEF); }
@Override
- public boolean equals(Object o) {
+ public boolean equals(Object o)
+ {
if (this == o)
return true;
if (!(o instanceof H5O_token_t))
return false;
- H5O_token_t token = (H5O_token_t) o;
+ H5O_token_t token = (H5O_token_t)o;
return Arrays.equals(this.data, token.data);
}
diff --git a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java
index 0c6111b..3213695 100644
--- a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java
@@ -21,25 +21,26 @@ import java.io.Serializable;
public class H5_ih_info_t implements Serializable {
private static final long serialVersionUID = -142238015615462707L;
/** btree and/or list size of index */
- public long index_size;
+ public long index_size;
/** btree and/or list size of hp */
- public long heap_size;
+ public long heap_size;
- H5_ih_info_t (long index_size, long heap_size)
+ H5_ih_info_t(long index_size, long heap_size)
{
this.index_size = index_size;
- this.heap_size = heap_size;
+ this.heap_size = heap_size;
}
@Override
- public boolean equals(Object o) {
+ public boolean equals(Object o)
+ {
if (this == o)
return true;
if (!(o instanceof H5_ih_info_t))
return false;
- H5_ih_info_t info = (H5_ih_info_t) o;
+ H5_ih_info_t info = (H5_ih_info_t)o;
if (this.index_size != info.index_size)
return false;
diff --git a/java/src/hdf/hdf5lib/structs/package-info.java b/java/src/hdf/hdf5lib/structs/package-info.java
index 8a9d97d..a3ec6cd 100644
--- a/java/src/hdf/hdf5lib/structs/package-info.java
+++ b/java/src/hdf/hdf5lib/structs/package-info.java
@@ -11,7 +11,8 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-/** All structure definitions define java equivalents of the C structures needed
+/**
+ * All structure definitions define java equivalents of the C structures needed
* by the C API calls. See the C API for information about the structures.
*/
package hdf.hdf5lib.structs;
diff --git a/java/test/CMakeLists.txt b/java/test/CMakeLists.txt
index b1186a4..9d1ed2b 100644
--- a/java/test/CMakeLists.txt
+++ b/java/test/CMakeLists.txt
@@ -86,6 +86,13 @@ foreach (test_file ${HDF5_JAVA_TEST_SOURCES})
add_dependencies (${HDF5_JAVA_TEST_LIB_TARGET}_${test_file} ${HDF5_JAVA_HDF5_LIB_TARGET})
set_target_properties (${HDF5_JAVA_TEST_LIB_TARGET}_${test_file} PROPERTIES FOLDER test/java)
+
+ #-----------------------------------------------------------------------------
+ # Add Target to clang-format
+ #-----------------------------------------------------------------------------
+ if (HDF5_ENABLE_FORMATTERS)
+ clang_format (HDF5_JAVA_TEST_${test_file}_SRC_FORMAT ${test_file}.java)
+ endif ()
endforeach ()
foreach (h5_file ${HDF5_JAVA_TEST_SOURCES})
diff --git a/java/test/TestAll.java b/java/test/TestAll.java
index 16414e4..c22fbfe 100644
--- a/java/test/TestAll.java
+++ b/java/test/TestAll.java
@@ -16,21 +16,17 @@ import org.junit.runner.RunWith;
import org.junit.runners.Suite;
@RunWith(Suite.class)
-@Suite.SuiteClasses( { TestH5.class,
- TestH5Eparams.class, TestH5Eregister.class, TestH5Edefault.class, TestH5E.class,
- TestH5Fparams.class, TestH5Fbasic.class, TestH5F.class, TestH5Fswmr.class,
- TestH5Gbasic.class, TestH5G.class, TestH5Giterate.class,
- TestH5Sbasic.class, TestH5S.class,
- TestH5Tparams.class, TestH5Tbasic.class, TestH5T.class,
- TestH5Dparams.class, TestH5D.class, TestH5Dplist.class, TestH5Drw.class,
- TestH5Lparams.class, TestH5Lbasic.class, TestH5Lcreate.class,
- TestH5R.class, TestH5Rref.class,
- TestH5P.class, TestH5PData.class, TestH5Pfapl.class, TestH5Pvirtual.class, TestH5Plist.class,
- TestH5Pfapls3.class, TestH5Pfaplhdfs.class,
- TestH5A.class, TestH5Arw.class,
- TestH5Oparams.class, TestH5Obasic.class, TestH5Ocopy.class, TestH5Ocreate.class,
- TestH5PL.class, TestH5Z.class
-})
+@Suite.SuiteClasses({TestH5.class, TestH5Eparams.class, TestH5Eregister.class, TestH5Edefault.class,
+ TestH5E.class, TestH5Fparams.class, TestH5Fbasic.class, TestH5F.class,
+ TestH5Fswmr.class, TestH5Gbasic.class, TestH5G.class, TestH5Giterate.class,
+ TestH5Sbasic.class, TestH5S.class, TestH5Tparams.class, TestH5Tbasic.class,
+ TestH5T.class, TestH5Dparams.class, TestH5D.class, TestH5Dplist.class,
+ TestH5Drw.class, TestH5Lparams.class, TestH5Lbasic.class, TestH5Lcreate.class,
+ TestH5R.class, TestH5Rref.class, TestH5P.class, TestH5PData.class,
+ TestH5Pfapl.class, TestH5Pvirtual.class, TestH5Plist.class, TestH5Pfapls3.class,
+ TestH5Pfaplhdfs.class, TestH5A.class, TestH5Arw.class, TestH5Oparams.class,
+ TestH5Obasic.class, TestH5Ocopy.class, TestH5Ocreate.class, TestH5PL.class,
+ TestH5Z.class})
public class TestAll {
}
diff --git a/java/test/TestH5.java b/java/test/TestH5.java
index 168f28a..67a522c 100644
--- a/java/test/TestH5.java
+++ b/java/test/TestH5.java
@@ -20,9 +20,9 @@ import static org.junit.Assert.fail;
import java.io.ByteArrayOutputStream;
import java.io.File;
import java.io.FileInputStream;
+import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.FileReader;
-import java.io.FileNotFoundException;
import java.io.IOException;
import java.io.ObjectInputStream;
import java.io.ObjectOutputStream;
@@ -46,45 +46,53 @@ import org.junit.rules.TestName;
*
*/
public class TestH5 {
- @Rule public TestName testname = new TestName();
- private static final String H5_FILE = "testData.h5";
- private static final String EXPORT_FILE = "testExport.txt";
- private static final String H5_REGION_FILE = "trefer_reg.h5";
+ @Rule
+ public TestName testname = new TestName();
+ private static final String H5_FILE = "testData.h5";
+ private static final String EXPORT_FILE = "testExport.txt";
+ private static final String H5_REGION_FILE = "trefer_reg.h5";
private static final String EXPORT_REGION_FILE = "testExportReg.txt";
- private static final String H5_ATTR_FILE = "trefer_attr.h5";
- private static final String EXPORT_ATTR_FILE = "testExportAttr.txt";
- private static final String H5_DREG_FILE = "tdatareg.h5";
- private static final String EXPORT_DREG_FILE = "testExportDReg.txt";
- private static final String H5_AREG_FILE = "tattrreg.h5";
- private static final String EXPORT_AREG_FILE = "testExportAReg.txt";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
- private static final int DIM_BLKS = 36;
- private static final int DIM_PNTS = 10;
- private static final int DIM_ATTR = 12;
- private static final int RANK = 2;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
- long[] H5dims = { DIM_X, DIM_Y };
-
- private final void _deleteFile(String filename) {
+ private static final String H5_ATTR_FILE = "trefer_attr.h5";
+ private static final String EXPORT_ATTR_FILE = "testExportAttr.txt";
+ private static final String H5_DREG_FILE = "tdatareg.h5";
+ private static final String EXPORT_DREG_FILE = "testExportDReg.txt";
+ private static final String H5_AREG_FILE = "tattrreg.h5";
+ private static final String EXPORT_AREG_FILE = "testExportAReg.txt";
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
+ private static final int DIM_BLKS = 36;
+ private static final int DIM_PNTS = 10;
+ private static final int DIM_ATTR = 12;
+ private static final int RANK = 2;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+ long[] H5dims = {DIM_X, DIM_Y};
+
+ private final void _deleteFile(String filename)
+ {
File file = null;
try {
file = new File(filename);
}
- catch (Throwable err) {}
+ catch (Throwable err) {
+ }
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
- private final long _createDataset(long fid, long dsid, String name, long dapl) {
+ private final long _createDataset(long fid, long dsid, String name, long dapl)
+ {
long did = HDF5Constants.H5I_INVALID_HID;
try {
- did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32LE, dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+ did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32LE, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -95,12 +103,13 @@ public class TestH5 {
return did;
}
- private final void _createH5File() {
+ private final void _createH5File()
+ {
try {
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
- H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
+ H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -118,62 +127,77 @@ public class TestH5 {
}
}
- private final void _closeH5File() {
+ private final void _closeH5File()
+ {
if (H5did >= 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
- H5fid = HDF5Constants.H5I_INVALID_HID;
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
+ H5fid = HDF5Constants.H5I_INVALID_HID;
H5dsid = HDF5Constants.H5I_INVALID_HID;
- H5did = HDF5Constants.H5I_INVALID_HID;
+ H5did = HDF5Constants.H5I_INVALID_HID;
}
- public void _openH5File(String filename, String dsetname) {
- try {
- H5fid = H5.H5Fopen(filename,
- HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5._openH5file: " + err);
- }
- assertTrue("TestH5._openH5file: H5.H5Fopen: ", H5fid >= 0);
- try {
- H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5._openH5file: " + err);
- }
- assertTrue("TestH5._openH5file: H5.H5Dopen: ", H5did >= 0);
- try {
- H5dsid = H5.H5Dget_space(H5did);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5._openH5file: " + err);
- }
- assertTrue("TestH5._openH5file: H5.H5Screate_simple: ",H5dsid > 0);
+ public void _openH5File(String filename, String dsetname)
+ {
+ try {
+ H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5._openH5file: " + err);
+ }
+ assertTrue("TestH5._openH5file: H5.H5Fopen: ", H5fid >= 0);
+ try {
+ H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5._openH5file: " + err);
+ }
+ assertTrue("TestH5._openH5file: H5.H5Dopen: ", H5did >= 0);
+ try {
+ H5dsid = H5.H5Dget_space(H5did);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5._openH5file: " + err);
+ }
+ assertTrue("TestH5._openH5file: H5.H5Screate_simple: ", H5dsid > 0);
}
- public final void _deleteH5file() {
+ public final void _deleteH5file()
+ {
_closeH5File();
_deleteFile(H5_FILE);
}
@After
- public void closeH5File() throws HDF5LibraryException {
+ public void closeH5File() throws HDF5LibraryException
+ {
_closeH5File();
- assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.println();
}
@Before
- public void verifyCount()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
+ public void verifyCount() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@@ -184,33 +208,30 @@ public class TestH5 {
* being retained hdf java does not access the symbol.
*/
@Test
- public void testJ2C() {
- int H5F_ACC_RDONLY = 0x0000;
- int H5F_ACC_RDWR = 0x0001;
- int H5F_ACC_TRUNC = 0x0002;
- int H5F_ACC_EXCL = 0x0004;
- int H5F_ACC_CREAT = 0x0010;
- int H5F_OBJ_FILE = 0x0001;
- int H5F_OBJ_DATASET = 0x0002;
- int H5F_OBJ_GROUP = 0x0004;
+ public void testJ2C()
+ {
+ int H5F_ACC_RDONLY = 0x0000;
+ int H5F_ACC_RDWR = 0x0001;
+ int H5F_ACC_TRUNC = 0x0002;
+ int H5F_ACC_EXCL = 0x0004;
+ int H5F_ACC_CREAT = 0x0010;
+ int H5F_OBJ_FILE = 0x0001;
+ int H5F_OBJ_DATASET = 0x0002;
+ int H5F_OBJ_GROUP = 0x0004;
int H5F_OBJ_DATATYPE = 0x0008;
- int H5F_OBJ_ATTR = 0x0010;
- int H5F_OBJ_ALL = H5F_OBJ_FILE | H5F_OBJ_DATASET | H5F_OBJ_GROUP
- | H5F_OBJ_DATATYPE | H5F_OBJ_ATTR;
+ int H5F_OBJ_ATTR = 0x0010;
+ int H5F_OBJ_ALL = H5F_OBJ_FILE | H5F_OBJ_DATASET | H5F_OBJ_GROUP | H5F_OBJ_DATATYPE | H5F_OBJ_ATTR;
int H5F_OBJ_LOCAL = 0x0020;
- int definedValues[] = { H5F_ACC_RDONLY, H5F_ACC_RDWR, H5F_ACC_TRUNC,
- H5F_ACC_EXCL, H5F_ACC_CREAT, H5F_OBJ_FILE,
- H5F_OBJ_DATASET, H5F_OBJ_GROUP, H5F_OBJ_DATATYPE, H5F_OBJ_ATTR,
- H5F_OBJ_ALL, H5F_OBJ_LOCAL };
+ int definedValues[] = {H5F_ACC_RDONLY, H5F_ACC_RDWR, H5F_ACC_TRUNC, H5F_ACC_EXCL,
+ H5F_ACC_CREAT, H5F_OBJ_FILE, H5F_OBJ_DATASET, H5F_OBJ_GROUP,
+ H5F_OBJ_DATATYPE, H5F_OBJ_ATTR, H5F_OBJ_ALL, H5F_OBJ_LOCAL};
- int j2cValues[] = { HDF5Constants.H5F_ACC_RDONLY,
- HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5F_ACC_EXCL,
- HDF5Constants.H5F_ACC_CREAT, HDF5Constants.H5F_OBJ_FILE,
- HDF5Constants.H5F_OBJ_DATASET, HDF5Constants.H5F_OBJ_GROUP,
- HDF5Constants.H5F_OBJ_DATATYPE, HDF5Constants.H5F_OBJ_ATTR,
- HDF5Constants.H5F_OBJ_ALL, HDF5Constants.H5F_OBJ_LOCAL };
+ int j2cValues[] = {
+ HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5F_ACC_TRUNC,
+ HDF5Constants.H5F_ACC_EXCL, HDF5Constants.H5F_ACC_CREAT, HDF5Constants.H5F_OBJ_FILE,
+ HDF5Constants.H5F_OBJ_DATASET, HDF5Constants.H5F_OBJ_GROUP, HDF5Constants.H5F_OBJ_DATATYPE,
+ HDF5Constants.H5F_OBJ_ATTR, HDF5Constants.H5F_OBJ_ALL, HDF5Constants.H5F_OBJ_LOCAL};
for (int i = 0; i < definedValues.length; i++) {
assertEquals(definedValues[i], j2cValues[i]);
@@ -224,7 +245,8 @@ public class TestH5 {
* Test method for {@link hdf.hdf5lib.H5#H5error_off()}.
*/
@Test
- public void testH5error_off() {
+ public void testH5error_off()
+ {
try {
H5.H5error_off();
}
@@ -237,7 +259,8 @@ public class TestH5 {
* Test method for {@link hdf.hdf5lib.H5#H5open()}.
*/
@Test
- public void testH5open() {
+ public void testH5open()
+ {
try {
H5.H5open();
}
@@ -250,7 +273,8 @@ public class TestH5 {
* Test method for {@link hdf.hdf5lib.H5#H5garbage_collect()}.
*/
@Test
- public void testH5garbage_collect() {
+ public void testH5garbage_collect()
+ {
try {
H5.H5garbage_collect();
}
@@ -265,17 +289,18 @@ public class TestH5 {
* .
*/
@Test
- public void testH5set_free_list_limits() {
+ public void testH5set_free_list_limits()
+ {
int reg_global_lim = 1;
- int reg_list_lim = 1;
+ int reg_list_lim = 1;
int arr_global_lim = 1;
- int arr_list_lim = 1;
+ int arr_list_lim = 1;
int blk_global_lim = 1;
- int blk_list_lim = 1;
+ int blk_list_lim = 1;
try {
- H5.H5set_free_list_limits(reg_global_lim, reg_list_lim,
- arr_global_lim, arr_list_lim, blk_global_lim, blk_list_lim);
+ H5.H5set_free_list_limits(reg_global_lim, reg_list_lim, arr_global_lim, arr_list_lim,
+ blk_global_lim, blk_list_lim);
}
catch (Throwable err) {
fail("H5.H5set_free_list_limits failed: " + err);
@@ -286,8 +311,9 @@ public class TestH5 {
* Test method for {@link hdf.hdf5lib.H5#H5get_libversion(int[])}.
*/
@Test
- public void testH5get_libversion() {
- int libversion[] = { 1, 13, 2 };
+ public void testH5get_libversion()
+ {
+ int libversion[] = {1, 13, 2};
try {
H5.H5get_libversion(libversion);
@@ -309,7 +335,8 @@ public class TestH5 {
* fail.
*/
@Test
- public void testH5get_libversion_null_param() {
+ public void testH5get_libversion_null_param()
+ {
try {
H5.H5get_libversion(null);
}
@@ -325,7 +352,8 @@ public class TestH5 {
* {@link hdf.hdf5lib.H5#H5check_version(int, int, int)}.
*/
@Test
- public void testH5check_version() {
+ public void testH5check_version()
+ {
int majnum = 1, minnum = 13, relnum = 2;
try {
@@ -344,8 +372,9 @@ public class TestH5 {
}
@Test
- public void testIsSerializable() {
- H5 test = new H5();
+ public void testIsSerializable()
+ {
+ H5 test = new H5();
ByteArrayOutputStream out = new ByteArrayOutputStream();
ObjectOutputStream oos;
try {
@@ -358,7 +387,6 @@ public class TestH5 {
fail("ObjectOutputStream failed: " + err);
}
assertTrue(out.toByteArray().length > 0);
-
}
@SuppressWarnings("static-access")
@@ -368,7 +396,7 @@ public class TestH5 {
try {
H5 test = new H5();
- FileOutputStream fos = new FileOutputStream("temph5.ser");
+ FileOutputStream fos = new FileOutputStream("temph5.ser");
ObjectOutputStream oos = new ObjectOutputStream(fos);
oos.writeObject(test);
oos.close();
@@ -378,14 +406,14 @@ public class TestH5 {
}
try {
- FileInputStream fis = new FileInputStream("temph5.ser");
+ FileInputStream fis = new FileInputStream("temph5.ser");
ObjectInputStream ois = new ObjectInputStream(fis);
- H5 test = (hdf.hdf5lib.H5) ois.readObject();
+ H5 test = (hdf.hdf5lib.H5)ois.readObject();
ois.close();
- assertTrue("H5.LIB_VERSION[0]", test.LIB_VERSION[0]==H5.LIB_VERSION[0]);
- assertTrue("H5.LIB_VERSION[1]", test.LIB_VERSION[1]==H5.LIB_VERSION[1]);
-// assertTrue("H5.LIB_VERSION[2]", test.LIB_VERSION[2]==H5.LIB_VERSION[2]);
+ assertTrue("H5.LIB_VERSION[0]", test.LIB_VERSION[0] == H5.LIB_VERSION[0]);
+ assertTrue("H5.LIB_VERSION[1]", test.LIB_VERSION[1] == H5.LIB_VERSION[1]);
+ // assertTrue("H5.LIB_VERSION[2]", test.LIB_VERSION[2]==H5.LIB_VERSION[2]);
// Clean up the file
new File("temph5.ser").delete();
@@ -396,10 +424,11 @@ public class TestH5 {
}
@Test
- public void testH5export_dataset() {
- int[][] dset_data = new int[DIM_X][DIM_Y];
+ public void testH5export_dataset()
+ {
+ int[][] dset_data = new int[DIM_X][DIM_Y];
int[][] dset_indata = new int[DIM_X][DIM_Y];
- int FILLVAL = 99;
+ int FILLVAL = 99;
_createH5File();
@@ -410,9 +439,8 @@ public class TestH5 {
try {
if (H5did >= 0)
- H5.H5Dwrite(H5did, HDF5Constants.H5T_STD_I32LE,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(H5did, HDF5Constants.H5T_STD_I32LE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -433,12 +461,12 @@ public class TestH5 {
File file = new File(EXPORT_FILE);
try {
- Reader reader = new FileReader(EXPORT_FILE);
+ Reader reader = new FileReader(EXPORT_FILE);
StreamTokenizer streamTokenizer = new StreamTokenizer(reader);
- int indx = 0;
- int jndx = 0;
- while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){
- if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
+ int indx = 0;
+ int jndx = 0;
+ while (streamTokenizer.nextToken() != StreamTokenizer.TT_EOF) {
+ if (streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
dset_indata[indx][jndx] = (int)streamTokenizer.nval;
jndx++;
if (jndx >= DIM_Y) {
@@ -453,21 +481,23 @@ public class TestH5 {
err.printStackTrace();
fail("read file failed: " + err);
}
- for(int row = 0; row < DIM_X; row++)
- for(int col = 0; col < DIM_Y; col++) {
- assertTrue("H5export_dataset: <"+row+","+col+">"+dset_indata[row][col]+"=99", dset_indata[row][col]==99);
+ for (int row = 0; row < DIM_X; row++)
+ for (int col = 0; col < DIM_Y; col++) {
+ assertTrue("H5export_dataset: <" + row + "," + col + ">" + dset_indata[row][col] + "=99",
+ dset_indata[row][col] == 99);
}
_deleteH5file();
}
@Test
- public void testH5export_region() {
- int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108,
- 111, 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171,
- 186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231,
- 207, 66, 252, 48, 84, 96, 12, 14, 213, 99};
- int[] dset_indata = new int[DIM_BLKS+DIM_PNTS];
- String objName = "/Dataset1";
+ public void testH5export_region()
+ {
+ int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108, 111,
+ 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171,
+ 186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231,
+ 207, 66, 252, 48, 84, 96, 12, 14, 213, 99};
+ int[] dset_indata = new int[DIM_BLKS + DIM_PNTS];
+ String objName = "/Dataset1";
_openH5File(H5_REGION_FILE, objName);
@@ -482,11 +512,11 @@ public class TestH5 {
File file = new File(EXPORT_REGION_FILE);
try {
- Reader reader = new FileReader(EXPORT_REGION_FILE);
+ Reader reader = new FileReader(EXPORT_REGION_FILE);
StreamTokenizer streamTokenizer = new StreamTokenizer(reader);
- int indx = 0;
- while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){
- if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
+ int indx = 0;
+ while (streamTokenizer.nextToken() != StreamTokenizer.TT_EOF) {
+ if (streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
dset_indata[indx] = (int)streamTokenizer.nval;
indx++;
}
@@ -497,15 +527,17 @@ public class TestH5 {
err.printStackTrace();
fail("read file failed: " + err);
}
- for(int row = 0; row < DIM_X; row++)
- assertTrue("testH5export_region: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]);
+ for (int row = 0; row < DIM_X; row++)
+ assertTrue("testH5export_region: <" + row + ">" + dset_indata[row],
+ dset_indata[row] == dset_data_expect[row]);
}
@Test
- public void testH5export_attribute() {
+ public void testH5export_attribute()
+ {
int[] dset_data_expect = {0, 3, 6, 9, 1, 4, 7, 10, 2, 5, 8, 11};
- int[] dset_indata = new int[DIM_ATTR];
- String objName = "/Dataset3";
+ int[] dset_indata = new int[DIM_ATTR];
+ String objName = "/Dataset3";
_openH5File(H5_ATTR_FILE, objName);
@@ -520,12 +552,12 @@ public class TestH5 {
File file = new File(EXPORT_ATTR_FILE);
try {
- Reader reader = new FileReader(EXPORT_ATTR_FILE);
+ Reader reader = new FileReader(EXPORT_ATTR_FILE);
StreamTokenizer streamTokenizer = new StreamTokenizer(reader);
- int indx = 0;
- int jndx = 0;
- while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){
- if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
+ int indx = 0;
+ int jndx = 0;
+ while (streamTokenizer.nextToken() != StreamTokenizer.TT_EOF) {
+ if (streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
dset_indata[indx] = (int)streamTokenizer.nval;
indx++;
}
@@ -536,18 +568,20 @@ public class TestH5 {
err.printStackTrace();
fail("read file failed: " + err);
}
- for(int row = 0; row < DIM_X; row++)
- assertTrue("testH5export_attribute: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]);
+ for (int row = 0; row < DIM_X; row++)
+ assertTrue("testH5export_attribute: <" + row + ">" + dset_indata[row],
+ dset_indata[row] == dset_data_expect[row]);
}
@Test
- public void testH5export_regdataset() {
- int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108,
- 111, 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171,
- 186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231,
- 207, 66, 252, 48, 84, 96, 12, 14, 213, 99};
- int[] dset_indata = new int[DIM_BLKS+DIM_PNTS];
- String objName = "/Dataset1";
+ public void testH5export_regdataset()
+ {
+ int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108, 111,
+ 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171,
+ 186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231,
+ 207, 66, 252, 48, 84, 96, 12, 14, 213, 99};
+ int[] dset_indata = new int[DIM_BLKS + DIM_PNTS];
+ String objName = "/Dataset1";
_openH5File(H5_DREG_FILE, objName);
@@ -562,11 +596,11 @@ public class TestH5 {
File file = new File(EXPORT_DREG_FILE);
try {
- Reader reader = new FileReader(EXPORT_DREG_FILE);
+ Reader reader = new FileReader(EXPORT_DREG_FILE);
StreamTokenizer streamTokenizer = new StreamTokenizer(reader);
- int indx = 0;
- while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){
- if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
+ int indx = 0;
+ while (streamTokenizer.nextToken() != StreamTokenizer.TT_EOF) {
+ if (streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
dset_indata[indx] = (int)streamTokenizer.nval;
indx++;
}
@@ -577,19 +611,21 @@ public class TestH5 {
err.printStackTrace();
fail("read file failed: " + err);
}
- for(int row = 0; row < DIM_X; row++)
- assertTrue("testH5export_regdataset: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]);
+ for (int row = 0; row < DIM_X; row++)
+ assertTrue("testH5export_regdataset: <" + row + ">" + dset_indata[row],
+ dset_indata[row] == dset_data_expect[row]);
}
@Test
- public void testH5export_attrdataset() {
- int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108,
- 111, 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171,
- 186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231,
- 207, 66, 252, 48, 84, 96, 12, 14, 213, 99};
- int[] dset_indata = new int[DIM_BLKS+DIM_PNTS];
- String dsetName = "/Dataset1";
- String objName = "Attribute1";
+ public void testH5export_attrdataset()
+ {
+ int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108, 111,
+ 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171,
+ 186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231,
+ 207, 66, 252, 48, 84, 96, 12, 14, 213, 99};
+ int[] dset_indata = new int[DIM_BLKS + DIM_PNTS];
+ String dsetName = "/Dataset1";
+ String objName = "Attribute1";
_openH5File(H5_AREG_FILE, dsetName);
@@ -604,12 +640,12 @@ public class TestH5 {
File file = new File(EXPORT_AREG_FILE);
try {
- Reader reader = new FileReader(EXPORT_AREG_FILE);
+ Reader reader = new FileReader(EXPORT_AREG_FILE);
StreamTokenizer streamTokenizer = new StreamTokenizer(reader);
- int indx = 0;
- int jndx = 0;
- while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){
- if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
+ int indx = 0;
+ int jndx = 0;
+ while (streamTokenizer.nextToken() != StreamTokenizer.TT_EOF) {
+ if (streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
dset_indata[indx] = (int)streamTokenizer.nval;
indx++;
}
@@ -620,7 +656,8 @@ public class TestH5 {
err.printStackTrace();
fail("read file failed: " + err);
}
- for(int row = 0; row < DIM_X; row++)
- assertTrue("testH5export_attrdataset: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]);
+ for (int row = 0; row < DIM_X; row++)
+ assertTrue("testH5export_attrdataset: <" + row + ">" + dset_indata[row],
+ dset_indata[row] == dset_data_expect[row]);
}
}
diff --git a/java/test/TestH5A.java b/java/test/TestH5A.java
index f2134d2..fed13ce 100644
--- a/java/test/TestH5A.java
+++ b/java/test/TestH5A.java
@@ -18,9 +18,8 @@ import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
-import java.util.ArrayList;
-
import java.io.File;
+import java.util.ArrayList;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
@@ -38,32 +37,39 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5A {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_FILE = "testA.h5";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
- long[] H5dims = { DIM_X, DIM_Y };
- long type_id = HDF5Constants.H5I_INVALID_HID;
- long space_id = HDF5Constants.H5I_INVALID_HID;
- long lapl_id = HDF5Constants.H5I_INVALID_HID;
- long aapl_id = HDF5Constants.H5I_INVALID_HID;
-
- private final void _deleteFile(String filename) {
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+ long[] H5dims = {DIM_X, DIM_Y};
+ long type_id = HDF5Constants.H5I_INVALID_HID;
+ long space_id = HDF5Constants.H5I_INVALID_HID;
+ long lapl_id = HDF5Constants.H5I_INVALID_HID;
+ long aapl_id = HDF5Constants.H5I_INVALID_HID;
+
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
- private final long _createDataset(long fid, long dsid, String name, long dapl) {
+ private final long _createDataset(long fid, long dsid, String name, long dapl)
+ {
long did = HDF5Constants.H5I_INVALID_HID;
try {
- did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+ did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -75,18 +81,18 @@ public class TestH5A {
}
@Before
- public void createH5file() throws NullPointerException, HDF5Exception {
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
assertTrue("TestH5A.createH5file: H5.H5Fcreate: ", H5fid > 0);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
assertTrue("TestH5A.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
- H5did = _createDataset(H5fid, H5dsid, "dset",
- HDF5Constants.H5P_DEFAULT);
+ H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
assertTrue("TestH5A.createH5file: _createDataset: ", H5did > 0);
space_id = H5.H5Screate(HDF5Constants.H5S_NULL);
assertTrue(space_id > 0);
@@ -108,32 +114,63 @@ public class TestH5A {
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
_deleteFile(H5_FILE);
if (type_id > 0)
- try {H5.H5Tclose(type_id);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(type_id);
+ }
+ catch (Exception ex) {
+ }
if (space_id > 0)
- try {H5.H5Sclose(space_id);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(space_id);
+ }
+ catch (Exception ex) {
+ }
if (lapl_id > 0)
- try {H5.H5Pclose(lapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(lapl_id);
+ }
+ catch (Exception ex) {
+ }
if (aapl_id > 0)
- try {H5.H5Pclose(aapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(aapl_id);
+ }
+ catch (Exception ex) {
+ }
System.out.println();
}
@Test
- public void testH5Acreate2() {
+ public void testH5Acreate2()
+ {
long attr_id = HDF5Constants.H5I_INVALID_HID;
try {
- attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
assertTrue("testH5Acreate2", attr_id >= 0);
}
catch (Throwable err) {
@@ -142,34 +179,40 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Acreate2_invalidobject() throws Throwable {
+ public void testH5Acreate2_invalidobject() throws Throwable
+ {
H5.H5Acreate(H5dsid, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = NullPointerException.class)
- public void testH5Acreate2_nullname() throws Throwable {
+ public void testH5Acreate2_nullname() throws Throwable
+ {
H5.H5Acreate(H5did, null, type_id, space_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Aopen() {
- String attr_name = "dset";
+ public void testH5Aopen()
+ {
+ String attr_name = "dset";
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long attr_id = HDF5Constants.H5I_INVALID_HID;
+ long attr_id = HDF5Constants.H5I_INVALID_HID;
try {
- attr_id = H5.H5Acreate(H5did, attr_name, type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attr_id = H5.H5Acreate(H5did, attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
// Opening the existing attribute, attr_name(Created by H5ACreate2)
// attached to an object identifier.
- attribute_id = H5.H5Aopen(H5did, attr_name,
- HDF5Constants.H5P_DEFAULT);
+ attribute_id = H5.H5Aopen(H5did, attr_name, HDF5Constants.H5P_DEFAULT);
assertTrue("testH5Aopen: H5Aopen", attribute_id >= 0);
}
catch (Throwable err) {
@@ -178,35 +221,45 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
if (attribute_id > 0)
- try {H5.H5Aclose(attribute_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attribute_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Aopen_invalidname() throws Throwable {
+ public void testH5Aopen_invalidname() throws Throwable
+ {
H5.H5Aopen(H5did, "attr_name", HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Aopen_by_idx() {
- long loc_id = H5did;
- String obj_name = ".";
- int idx_type = HDF5Constants.H5_INDEX_CRT_ORDER;
- int order = HDF5Constants.H5_ITER_INC;
- long n = 0;
- long attr_id = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Aopen_by_idx()
+ {
+ long loc_id = H5did;
+ String obj_name = ".";
+ int idx_type = HDF5Constants.H5_INDEX_CRT_ORDER;
+ int order = HDF5Constants.H5_ITER_INC;
+ long n = 0;
+ long attr_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
- attr_id = H5.H5Acreate(H5did, "file", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attr_id = H5.H5Acreate(H5did, "file", type_id, space_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
// Opening the existing attribute, obj_name(Created by H5ACreate2)
// by index, attached to an object identifier.
- attribute_id = H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC,
- 0, aapl_id, lapl_id);
+ attribute_id = H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 0, aapl_id, lapl_id);
assertTrue("testH5Aopen_by_idx: H5Aopen_by_idx", attribute_id >= 0);
@@ -215,29 +268,29 @@ public class TestH5A {
// with n=5 and we do not have 5 attributes created.
try {
n = 5;
- H5.H5Aopen_by_idx(loc_id, obj_name, idx_type, order, n,
- aapl_id, lapl_id);
+ H5.H5Aopen_by_idx(loc_id, obj_name, idx_type, order, n, aapl_id, lapl_id);
fail("Negative Test Failed:- Error not Thrown when n is invalid.");
}
catch (AssertionError err) {
fail("H5.H5Aopen_by_idx: " + err);
}
- catch (HDF5LibraryException err) {}
+ catch (HDF5LibraryException err) {
+ }
// Negative test- Error should be thrown when H5Aopen_by_idx is
// called
// with an invalid object name(which hasn't been created).
try {
- n = 0;
+ n = 0;
obj_name = "file";
- H5.H5Aopen_by_idx(loc_id, obj_name, idx_type, order, n,
- aapl_id, lapl_id);
+ H5.H5Aopen_by_idx(loc_id, obj_name, idx_type, order, n, aapl_id, lapl_id);
fail("Negative Test Failed:- Error not Thrown when attribute name is invalid.");
}
catch (AssertionError err) {
fail("H5.H5Aopen_by_idx: " + err);
}
- catch (HDF5LibraryException err) {}
+ catch (HDF5LibraryException err) {
+ }
}
catch (Throwable err) {
err.printStackTrace();
@@ -245,32 +298,37 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
if (attribute_id > 0)
- try {H5.H5Aclose(attribute_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attribute_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Acreate_by_name() {
- String obj_name = ".";
- String attr_name = "DATASET";
+ public void testH5Acreate_by_name()
+ {
+ String obj_name = ".";
+ String attr_name = "DATASET";
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- boolean bool_val = false;
+ boolean bool_val = false;
try {
- attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name,
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- aapl_id, lapl_id);
- assertTrue("testH5Acreate_by_name: H5Acreate_by_name",
- attribute_id >= 0);
+ attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, aapl_id, lapl_id);
+ assertTrue("testH5Acreate_by_name: H5Acreate_by_name", attribute_id >= 0);
// Check if the name of attribute attached to the object specified
// by loc_id and obj_name exists.It should be true.
- bool_val = H5.H5Aexists_by_name(H5fid, obj_name, attr_name,
- lapl_id);
- assertTrue("testH5Acreate_by_name: H5Aexists_by_name",
- bool_val == true);
+ bool_val = H5.H5Aexists_by_name(H5fid, obj_name, attr_name, lapl_id);
+ assertTrue("testH5Acreate_by_name: H5Aexists_by_name", bool_val == true);
}
catch (Throwable err) {
err.printStackTrace();
@@ -278,21 +336,27 @@ public class TestH5A {
}
finally {
if (attribute_id > 0)
- try {H5.H5Aclose(attribute_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attribute_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Arename() throws Throwable, HDF5LibraryException, NullPointerException {
- long loc_id = H5fid;
+ public void testH5Arename() throws Throwable, HDF5LibraryException, NullPointerException
+ {
+ long loc_id = H5fid;
String old_attr_name = "old";
String new_attr_name = "new";
- long attr_id = HDF5Constants.H5I_INVALID_HID;
- int ret_val = -1;
- boolean bool_val = false;
+ long attr_id = HDF5Constants.H5I_INVALID_HID;
+ int ret_val = -1;
+ boolean bool_val = false;
try {
- attr_id = H5.H5Acreate(loc_id, old_attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT, aapl_id);
+ attr_id =
+ H5.H5Acreate(loc_id, old_attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT, aapl_id);
ret_val = H5.H5Arename(loc_id, old_attr_name, new_attr_name);
@@ -315,41 +379,42 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Arename_by_name() {
- long loc_id = H5fid;
- String obj_name = ".";
+ public void testH5Arename_by_name()
+ {
+ long loc_id = H5fid;
+ String obj_name = ".";
String old_attr_name = "old";
String new_attr_name = "new";
- long attr_id = HDF5Constants.H5I_INVALID_HID;
- int ret_val = -1;
- boolean bool_val = false;
+ long attr_id = HDF5Constants.H5I_INVALID_HID;
+ int ret_val = -1;
+ boolean bool_val = false;
try {
- attr_id = H5.H5Acreate_by_name(loc_id, obj_name, old_attr_name,
- type_id, space_id, HDF5Constants.H5P_DEFAULT, aapl_id, lapl_id);
+ attr_id = H5.H5Acreate_by_name(loc_id, obj_name, old_attr_name, type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, aapl_id, lapl_id);
- ret_val = H5.H5Arename_by_name(loc_id, obj_name, old_attr_name,
- new_attr_name, lapl_id);
+ ret_val = H5.H5Arename_by_name(loc_id, obj_name, old_attr_name, new_attr_name, lapl_id);
// Check the return value.It should be non negative.
assertTrue("testH5Arename_by_name: H5Arename_by_name", ret_val >= 0);
// Check if the new name of attribute attached to the object
// specified by loc_id and obj_name exists.It should be true.
- bool_val = H5.H5Aexists_by_name(loc_id, obj_name, new_attr_name,
- lapl_id);
- assertTrue("testH5Arename_by_name: H5Aexists_by_name",
- bool_val == true);
+ bool_val = H5.H5Aexists_by_name(loc_id, obj_name, new_attr_name, lapl_id);
+ assertTrue("testH5Arename_by_name: H5Aexists_by_name", bool_val == true);
// Check if the old name of attribute attached to the object
// specified by loc_id and obj_name exists. It should equal false.
- bool_val = H5.H5Aexists_by_name(loc_id, obj_name, old_attr_name,
- lapl_id);
+ bool_val = H5.H5Aexists_by_name(loc_id, obj_name, old_attr_name, lapl_id);
assertEquals(bool_val, false);
}
catch (Throwable err) {
@@ -358,21 +423,25 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Aget_name() {
- String obj_name = ".";
- String attr_name = "DATASET1";
- String ret_name = null;
+ public void testH5Aget_name()
+ {
+ String obj_name = ".";
+ String attr_name = "DATASET1";
+ String ret_name = null;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
- attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name,
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- aapl_id, lapl_id);
+ attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, aapl_id, lapl_id);
assertTrue("testH5Aget_name: H5Acreate_by_name ", attribute_id > 0);
ret_name = H5.H5Aget_name(attribute_id);
assertEquals(ret_name, attr_name);
@@ -383,40 +452,40 @@ public class TestH5A {
}
finally {
if (attribute_id > 0)
- try {H5.H5Aclose(attribute_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attribute_id);
+ }
+ catch (Exception ex) {
+ }
}
}
-
@Test
- public void testH5Aget_name_by_idx() {
- long loc_id = H5fid;
- String obj_name = ".";
+ public void testH5Aget_name_by_idx()
+ {
+ long loc_id = H5fid;
+ String obj_name = ".";
String attr_name = "DATASET1", attr2_name = "DATASET2";
String ret_name = null;
- int idx_type = HDF5Constants.H5_INDEX_NAME;
- int order = HDF5Constants.H5_ITER_INC;
- int n = 0;
- long attr1_id = HDF5Constants.H5I_INVALID_HID;
- long attr2_id = HDF5Constants.H5I_INVALID_HID;
+ int idx_type = HDF5Constants.H5_INDEX_NAME;
+ int order = HDF5Constants.H5_ITER_INC;
+ int n = 0;
+ long attr1_id = HDF5Constants.H5I_INVALID_HID;
+ long attr2_id = HDF5Constants.H5I_INVALID_HID;
try {
- attr1_id = H5.H5Acreate_by_name(loc_id, obj_name, attr_name,
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr2_id = H5.H5Acreate_by_name(loc_id, obj_name, attr2_name,
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr1_id = H5.H5Acreate_by_name(loc_id, obj_name, attr_name, type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr2_id = H5.H5Acreate_by_name(loc_id, obj_name, attr2_name, type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
// getting the 1st attribute name(n=0).
- ret_name = H5.H5Aget_name_by_idx(loc_id, obj_name, idx_type, order,
- n, lapl_id);
+ ret_name = H5.H5Aget_name_by_idx(loc_id, obj_name, idx_type, order, n, lapl_id);
assertFalse("H5Aget_name_by_idx ", ret_name == null);
assertEquals(ret_name, attr_name);
// getting the second attribute name(n=1)
- ret_name = H5.H5Aget_name_by_idx(loc_id, obj_name, idx_type, order,
- 1, lapl_id);
+ ret_name = H5.H5Aget_name_by_idx(loc_id, obj_name, idx_type, order, 1, lapl_id);
assertFalse("H5Aget_name_by_idx ", ret_name == null);
assertEquals(ret_name, attr2_name);
}
@@ -426,20 +495,29 @@ public class TestH5A {
}
finally {
if (attr1_id > 0)
- try {H5.H5Aclose(attr1_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr1_id);
+ }
+ catch (Exception ex) {
+ }
if (attr2_id > 0)
- try {H5.H5Aclose(attr2_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr2_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Aget_storage_size() {
- long attr_id = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Aget_storage_size()
+ {
+ long attr_id = HDF5Constants.H5I_INVALID_HID;
long attr_size = HDF5Constants.H5I_INVALID_HID;
try {
- attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
attr_size = H5.H5Aget_storage_size(attr_id);
assertTrue("The size of attribute is :", attr_size == 0);
@@ -450,27 +528,31 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Aget_info() {
+ public void testH5Aget_info()
+ {
H5A_info_t attr_info = null;
- long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long attr_id = HDF5Constants.H5I_INVALID_HID;
+ long attribute_id = HDF5Constants.H5I_INVALID_HID;
+ long attr_id = HDF5Constants.H5I_INVALID_HID;
try {
- attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
attribute_id = H5.H5Aopen(H5did, "dset", HDF5Constants.H5P_DEFAULT);
// Calling H5Aget_info with attribute_id returned from H5Aopen.
attr_info = H5.H5Aget_info(attribute_id);
assertFalse("H5Aget_info ", attr_info == null);
- assertTrue("Corder_Valid should be false",
- attr_info.corder_valid == false);
+ assertTrue("Corder_Valid should be false", attr_info.corder_valid == false);
assertTrue("Character set used for attribute name",
- attr_info.cset == HDF5Constants.H5T_CSET_ASCII);
+ attr_info.cset == HDF5Constants.H5T_CSET_ASCII);
assertTrue("Corder ", attr_info.corder == 0);
assertEquals(attr_info.data_size, H5.H5Aget_storage_size(attr_id));
}
@@ -480,34 +562,40 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
if (attribute_id > 0)
- try {H5.H5Aclose(attribute_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attribute_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Aget_info1() {
+ public void testH5Aget_info1()
+ {
H5A_info_t attr_info = null;
- long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long attr_id = HDF5Constants.H5I_INVALID_HID;
- int order = HDF5Constants.H5_ITER_INC;
+ long attribute_id = HDF5Constants.H5I_INVALID_HID;
+ long attr_id = HDF5Constants.H5I_INVALID_HID;
+ int order = HDF5Constants.H5_ITER_INC;
try {
- attr_id = H5.H5Acreate(H5did, ".", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- attribute_id = H5.H5Aopen_by_idx(H5did, ".",
- HDF5Constants.H5_INDEX_CRT_ORDER, order, 0,
- HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr_id = H5.H5Acreate(H5did, ".", type_id, space_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ attribute_id = H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, order, 0,
+ HDF5Constants.H5P_DEFAULT, lapl_id);
// Calling H5Aget_info with attribute_id returned from
// H5Aopen_by_idx.
attr_info = H5.H5Aget_info(attribute_id);
assertFalse("H5Aget_info ", attr_info == null);
- assertTrue("Corder_Valid should be true",
- attr_info.corder_valid == true);
- assertTrue("Character set",
- attr_info.cset == HDF5Constants.H5T_CSET_ASCII);
+ assertTrue("Corder_Valid should be true", attr_info.corder_valid == true);
+ assertTrue("Character set", attr_info.cset == HDF5Constants.H5T_CSET_ASCII);
assertTrue("Corder ", attr_info.corder == 0);
assertEquals(attr_info.data_size, H5.H5Aget_storage_size(attr_id));
}
@@ -517,55 +605,81 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
if (attribute_id > 0)
- try {H5.H5Aclose(attribute_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attribute_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Aget_info_by_idx() {
- long attr_id = HDF5Constants.H5I_INVALID_HID;
- long attr2_id = HDF5Constants.H5I_INVALID_HID;;
+ public void testH5Aget_info_by_idx()
+ {
+ long attr_id = HDF5Constants.H5I_INVALID_HID;
+ long attr2_id = HDF5Constants.H5I_INVALID_HID;
+ ;
H5A_info_t attr_info = null;
try {
- attr_id = H5.H5Acreate(H5did, "dset1", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- attr2_id = H5.H5Acreate(H5did, "dataset2", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
-
- //Verify info for 1st attribute, in increasing creation order
- attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, lapl_id);
+ attr_id = H5.H5Acreate(H5did, "dset1", type_id, space_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ attr2_id = H5.H5Acreate(H5did, "dataset2", type_id, space_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+
+ // Verify info for 1st attribute, in increasing creation order
+ attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 0, lapl_id);
assertNotNull(attr_info);
- assertTrue("Corder ", attr_info.corder == 0);//should equal 0 as this is the order of 1st attribute created.
+ assertTrue("Corder ",
+ attr_info.corder ==
+ 0); // should equal 0 as this is the order of 1st attribute created.
assertEquals(attr_info.data_size, H5.H5Aget_storage_size(attr_id));
- //Verify info for 2nd attribute, in increasing creation order
- attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 1, lapl_id);
+ // Verify info for 2nd attribute, in increasing creation order
+ attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 1, lapl_id);
assertNotNull(attr_info);
assertTrue("Corder", attr_info.corder == 1);
assertEquals(attr_info.data_size, H5.H5Aget_storage_size(attr2_id));
- //verify info for 2nd attribute, in decreasing creation order
- attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_DEC, 0, lapl_id);
+ // verify info for 2nd attribute, in decreasing creation order
+ attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_DEC, 0, lapl_id);
assertNotNull(attr_info);
- assertTrue("Corder", attr_info.corder == 1); //should equal 1 as this is the order of 2nd attribute created.
+ assertTrue("Corder",
+ attr_info.corder ==
+ 1); // should equal 1 as this is the order of 2nd attribute created.
- //verify info for 1st attribute, in decreasing creation order
- attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_DEC, 1, lapl_id);
+ // verify info for 1st attribute, in decreasing creation order
+ attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_DEC, 1, lapl_id);
assertNotNull(attr_info);
- assertTrue("Corder", attr_info.corder == 0); //should equal 0 as this is the order of 1st attribute created.
+ assertTrue("Corder",
+ attr_info.corder ==
+ 0); // should equal 0 as this is the order of 1st attribute created.
- //verify info for 1st attribute, in increasing name order
- attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 1, lapl_id);
+ // verify info for 1st attribute, in increasing name order
+ attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 1, lapl_id);
assertNotNull(attr_info);
- assertTrue("Corder", attr_info.corder == 0); //should equal 0 as this is the order of 1st attribute created.
+ assertTrue("Corder",
+ attr_info.corder ==
+ 0); // should equal 0 as this is the order of 1st attribute created.
- //verify info for 2nd attribute, in decreasing name order
- attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_DEC, 1, lapl_id);
+ // verify info for 2nd attribute, in decreasing name order
+ attr_info = H5.H5Aget_info_by_idx(H5did, ".", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_DEC, 1, lapl_id);
assertNotNull(attr_info);
- assertTrue("Corder", attr_info.corder == 1); //should equal 1 as this is the order of 2nd attribute created.
+ assertTrue("Corder",
+ attr_info.corder ==
+ 1); // should equal 1 as this is the order of 2nd attribute created.
}
catch (Throwable err) {
err.printStackTrace();
@@ -573,25 +687,32 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
if (attr2_id > 0)
- try {H5.H5Aclose(attr2_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr2_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Aget_info_by_name() {
- long attr_id = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Aget_info_by_name()
+ {
+ long attr_id = HDF5Constants.H5I_INVALID_HID;
H5A_info_t attr_info = null;
- String obj_name = ".";
- String attr_name = "DATASET";
+ String obj_name = ".";
+ String attr_name = "DATASET";
try {
- attr_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id,
- space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr_info = H5.H5Aget_info_by_name(H5fid, obj_name, attr_name,
- lapl_id);
+ attr_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr_info = H5.H5Aget_info_by_name(H5fid, obj_name, attr_name, lapl_id);
assertNotNull(attr_info);
}
catch (Throwable err) {
@@ -600,41 +721,45 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Adelete_by_name() {
- long attr_id = HDF5Constants.H5I_INVALID_HID;
- int ret_val = -1;
+ public void testH5Adelete_by_name()
+ {
+ long attr_id = HDF5Constants.H5I_INVALID_HID;
+ int ret_val = -1;
boolean bool_val = false;
- boolean exists = false;
+ boolean exists = false;
try {
- attr_id = H5.H5Acreate_by_name(H5fid, ".", "DATASET",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr_id = H5.H5Acreate_by_name(H5fid, ".", "DATASET", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
ret_val = H5.H5Adelete_by_name(H5fid, ".", "DATASET", lapl_id);
assertTrue("H5Adelete_by_name", ret_val >= 0);
// Check if the Attribute still exists.
- bool_val = H5.H5Aexists_by_name(H5fid, ".", "DATASET",
- lapl_id);
+ bool_val = H5.H5Aexists_by_name(H5fid, ".", "DATASET", lapl_id);
assertFalse("testH5Adelete_by_name: H5Aexists_by_name", bool_val);
exists = H5.H5Aexists(H5fid, "DATASET");
- assertFalse("testH5Adelete_by_name: H5Aexists ",exists);
+ assertFalse("testH5Adelete_by_name: H5Aexists ", exists);
// Negative test. Error thrown when we try to delete an attribute
// that has already been deleted.
- try{
+ try {
ret_val = H5.H5Adelete_by_name(H5fid, ".", "DATASET", lapl_id);
fail("Negative Test Failed: Error Not thrown.");
}
catch (AssertionError err) {
fail("H5.H5Adelete_by_name: " + err);
}
- catch (HDF5LibraryException err) {}
+ catch (HDF5LibraryException err) {
+ }
}
catch (Throwable err) {
err.printStackTrace();
@@ -642,14 +767,19 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Aexists() {
- boolean exists = false;
- long attr_id = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Aexists()
+ {
+ boolean exists = false;
+ long attr_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
@@ -662,14 +792,14 @@ public class TestH5A {
assertFalse("H5Aexists ", exists);
try {
- attr_id = H5.H5Acreate(H5fid, "dset", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- exists = H5.H5Aexists(H5fid, "dset");
+ attr_id = H5.H5Acreate(H5fid, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ exists = H5.H5Aexists(H5fid, "dset");
assertTrue("H5Aexists ", exists);
- attribute_id = H5.H5Acreate_by_name(H5fid, ".", "attribute",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
+ attribute_id =
+ H5.H5Acreate_by_name(H5fid, ".", "attribute", type_id, space_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, lapl_id);
exists = H5.H5Aexists(H5fid, "attribute");
assertTrue("H5Aexists ", exists);
}
@@ -679,35 +809,41 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
if (attribute_id > 0)
- try {H5.H5Aclose(attribute_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attribute_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Adelete_by_idx_order() {
+ public void testH5Adelete_by_idx_order()
+ {
boolean exists = false;
- long attr1_id = HDF5Constants.H5I_INVALID_HID;
- long attr2_id = HDF5Constants.H5I_INVALID_HID;
- long attr3_id = HDF5Constants.H5I_INVALID_HID;
- long attr4_id = HDF5Constants.H5I_INVALID_HID;
+ long attr1_id = HDF5Constants.H5I_INVALID_HID;
+ long attr2_id = HDF5Constants.H5I_INVALID_HID;
+ long attr3_id = HDF5Constants.H5I_INVALID_HID;
+ long attr4_id = HDF5Constants.H5I_INVALID_HID;
try {
- attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
-
- H5.H5Adelete_by_idx(H5fid, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 3, lapl_id);
+ attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+
+ H5.H5Adelete_by_idx(H5fid, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 3,
+ lapl_id);
exists = H5.H5Aexists(H5fid, "attribute4");
assertFalse("H5Adelete_by_idx: H5Aexists", exists);
}
@@ -717,34 +853,49 @@ public class TestH5A {
}
finally {
if (attr1_id > 0)
- try {H5.H5Aclose(attr1_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr1_id);
+ }
+ catch (Exception ex) {
+ }
if (attr2_id > 0)
- try {H5.H5Aclose(attr2_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr2_id);
+ }
+ catch (Exception ex) {
+ }
if (attr3_id > 0)
- try {H5.H5Aclose(attr3_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr3_id);
+ }
+ catch (Exception ex) {
+ }
if (attr4_id > 0)
- try {H5.H5Aclose(attr4_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr4_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Adelete_by_idx_name1() {
+ public void testH5Adelete_by_idx_name1()
+ {
boolean exists = false;
- long attr1_id = HDF5Constants.H5I_INVALID_HID;
- long attr2_id = HDF5Constants.H5I_INVALID_HID;
- long attr3_id = HDF5Constants.H5I_INVALID_HID;
+ long attr1_id = HDF5Constants.H5I_INVALID_HID;
+ long attr2_id = HDF5Constants.H5I_INVALID_HID;
+ long attr3_id = HDF5Constants.H5I_INVALID_HID;
try {
- attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- H5.H5Adelete_by_idx(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, lapl_id);
+ attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ H5.H5Adelete_by_idx(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2,
+ lapl_id);
exists = H5.H5Aexists(H5fid, "attribute3");
assertFalse("H5Adelete_by_idx: H5Aexists", exists);
}
@@ -754,37 +905,47 @@ public class TestH5A {
}
finally {
if (attr1_id > 0)
- try {H5.H5Aclose(attr1_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr1_id);
+ }
+ catch (Exception ex) {
+ }
if (attr2_id > 0)
- try {H5.H5Aclose(attr2_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr2_id);
+ }
+ catch (Exception ex) {
+ }
if (attr3_id > 0)
- try {H5.H5Aclose(attr3_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr3_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Adelete_by_idx_name2() {
+ public void testH5Adelete_by_idx_name2()
+ {
boolean exists = false;
- long attr1_id = HDF5Constants.H5I_INVALID_HID;
- long attr2_id = HDF5Constants.H5I_INVALID_HID;
- long attr3_id = HDF5Constants.H5I_INVALID_HID;
- long attr4_id = HDF5Constants.H5I_INVALID_HID;
+ long attr1_id = HDF5Constants.H5I_INVALID_HID;
+ long attr2_id = HDF5Constants.H5I_INVALID_HID;
+ long attr3_id = HDF5Constants.H5I_INVALID_HID;
+ long attr4_id = HDF5Constants.H5I_INVALID_HID;
try {
- attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
-
- H5.H5Adelete_by_idx(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_DEC, 3, lapl_id);
+ attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+
+ H5.H5Adelete_by_idx(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_DEC, 3,
+ lapl_id);
exists = H5.H5Aexists(H5fid, "attribute1");
assertFalse("H5Adelete_by_idx: H5Aexists", exists);
}
@@ -794,47 +955,66 @@ public class TestH5A {
}
finally {
if (attr1_id > 0)
- try {H5.H5Aclose(attr1_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr1_id);
+ }
+ catch (Exception ex) {
+ }
if (attr2_id > 0)
- try {H5.H5Aclose(attr2_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr2_id);
+ }
+ catch (Exception ex) {
+ }
if (attr3_id > 0)
- try {H5.H5Aclose(attr3_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr3_id);
+ }
+ catch (Exception ex) {
+ }
if (attr4_id > 0)
- try {H5.H5Aclose(attr4_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr4_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test(expected = NullPointerException.class)
- public void testH5Adelete_by_idx_null() throws Throwable {
- H5.H5Adelete_by_idx(H5fid, null, HDF5Constants.H5_INDEX_CRT_ORDER,
- HDF5Constants.H5_ITER_INC, 0, lapl_id);
+ public void testH5Adelete_by_idx_null() throws Throwable
+ {
+ H5.H5Adelete_by_idx(H5fid, null, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0,
+ lapl_id);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Adelete_by_idx_invalidobject() throws Throwable {
- H5.H5Adelete_by_idx(H5fid, "invalid", HDF5Constants.H5_INDEX_CRT_ORDER,
- HDF5Constants.H5_ITER_INC, 0, lapl_id);
+ public void testH5Adelete_by_idx_invalidobject() throws Throwable
+ {
+ H5.H5Adelete_by_idx(H5fid, "invalid", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0,
+ lapl_id);
}
@Test
- public void testH5Aopen_by_name() {
- String obj_name = ".";
- String attr_name = "DATASET";
+ public void testH5Aopen_by_name()
+ {
+ String obj_name = ".";
+ String attr_name = "DATASET";
long attribute_id = HDF5Constants.H5I_INVALID_HID;
- long aid = HDF5Constants.H5I_INVALID_HID;
+ long aid = HDF5Constants.H5I_INVALID_HID;
try {
- attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name,
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
+ attribute_id =
+ H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, lapl_id);
- //open Attribute by name
- if(attribute_id >= 0) {
+ // open Attribute by name
+ if (attribute_id >= 0) {
try {
aid = H5.H5Aopen_by_name(H5fid, obj_name, attr_name, HDF5Constants.H5P_DEFAULT, lapl_id);
- assertTrue("testH5Aopen_by_name: ", aid>=0);
+ assertTrue("testH5Aopen_by_name: ", aid >= 0);
}
- catch(Throwable err) {
+ catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Aopen_by_name " + err);
}
@@ -846,21 +1026,30 @@ public class TestH5A {
}
finally {
if (aid > 0)
- try {H5.H5Aclose(aid);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(aid);
+ }
+ catch (Exception ex) {
+ }
if (attribute_id > 0)
- try {H5.H5Aclose(attribute_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attribute_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Awrite_readVL() {
- String attr_name = "VLdata";
- long attr_id = HDF5Constants.H5I_INVALID_HID;
- long atype_id = HDF5Constants.H5I_INVALID_HID;
- long aspace_id = HDF5Constants.H5I_INVALID_HID;
- String[] str_data = { "Parting", "is such", "sweet", "sorrow." };
- long[] dims = { str_data.length };
- long lsize = 1;
+ public void testH5Awrite_readVL()
+ {
+ String attr_name = "VLdata";
+ long attr_id = HDF5Constants.H5I_INVALID_HID;
+ long atype_id = HDF5Constants.H5I_INVALID_HID;
+ long aspace_id = HDF5Constants.H5I_INVALID_HID;
+ String[] str_data = {"Parting", "is such", "sweet", "sorrow."};
+ long[] dims = {str_data.length};
+ long lsize = 1;
try {
atype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
@@ -870,7 +1059,11 @@ public class TestH5A {
}
catch (Exception err) {
if (atype_id > 0)
- try {H5.H5Tclose(atype_id);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(atype_id);
+ }
+ catch (Exception ex) {
+ }
err.printStackTrace();
fail("H5.testH5Awrite_readVL: " + err);
}
@@ -878,8 +1071,8 @@ public class TestH5A {
try {
aspace_id = H5.H5Screate_simple(1, dims, null);
assertTrue(aspace_id > 0);
- attr_id = H5.H5Acreate(H5did, attr_name, atype_id, aspace_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attr_id = H5.H5Acreate(H5did, attr_name, atype_id, aspace_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
assertTrue("testH5Awrite_readVL: ", attr_id >= 0);
H5.H5AwriteVL(attr_id, atype_id, str_data);
@@ -889,7 +1082,7 @@ public class TestH5A {
for (int j = 0; j < dims.length; j++) {
lsize *= dims[j];
}
- String[] strs = new String[(int) lsize];
+ String[] strs = new String[(int)lsize];
for (int j = 0; j < lsize; j++) {
strs[j] = "";
}
@@ -910,19 +1103,32 @@ public class TestH5A {
}
finally {
if (attr_id > 0)
- try {H5.H5Aclose(attr_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr_id);
+ }
+ catch (Exception ex) {
+ }
if (aspace_id > 0)
- try {H5.H5Sclose(aspace_id);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(aspace_id);
+ }
+ catch (Exception ex) {
+ }
if (atype_id > 0)
- try {H5.H5Tclose(atype_id);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(atype_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Aget_create_plist() {
- String attr_name = "DATASET1";
+ public void testH5Aget_create_plist()
+ {
+ String attr_name = "DATASET1";
int char_encoding = 0;
- long plist_id = HDF5Constants.H5I_INVALID_HID;
+ long plist_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
@@ -942,11 +1148,13 @@ public class TestH5A {
err.printStackTrace();
fail("H5Pget_char_encoding: " + err);
}
- assertTrue("testH5Aget_create_plist: get_char_encoding", char_encoding == HDF5Constants.H5T_CSET_ASCII);
+ assertTrue("testH5Aget_create_plist: get_char_encoding",
+ char_encoding == HDF5Constants.H5T_CSET_ASCII);
// Create an attribute for the dataset using the property list
try {
- attribute_id = H5.H5Acreate(H5fid, attr_name, type_id, space_id, plist_id, HDF5Constants.H5P_DEFAULT);
+ attribute_id =
+ H5.H5Acreate(H5fid, attr_name, type_id, space_id, plist_id, HDF5Constants.H5P_DEFAULT);
assertTrue("testH5Aget_create_plist: H5Acreate", attribute_id >= 0);
}
catch (Throwable err) {
@@ -967,7 +1175,8 @@ public class TestH5A {
err.printStackTrace();
fail("H5Pget_char_encoding: " + err);
}
- assertTrue("testH5Aget_create_plist: get_char_encoding", char_encoding == HDF5Constants.H5T_CSET_ASCII);
+ assertTrue("testH5Aget_create_plist: get_char_encoding",
+ char_encoding == HDF5Constants.H5T_CSET_ASCII);
}
catch (Throwable err) {
err.printStackTrace();
@@ -975,14 +1184,23 @@ public class TestH5A {
}
finally {
if (plist_id > 0)
- try {H5.H5Pclose(plist_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(plist_id);
+ }
+ catch (Exception ex) {
+ }
if (attribute_id > 0)
- try {H5.H5Aclose(attribute_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attribute_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Aiterate() {
+ public void testH5Aiterate()
+ {
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
long attr3_id = HDF5Constants.H5I_INVALID_HID;
@@ -990,48 +1208,56 @@ public class TestH5A {
class idata {
public String attr_name = null;
- idata(String name) {
- this.attr_name = name;
- }
+ idata(String name) { this.attr_name = name; }
}
class H5A_iter_data implements H5A_iterate_t {
public ArrayList<idata> iterdata = new ArrayList<idata>();
}
H5A_iterate_t iter_data = new H5A_iter_data();
class H5A_iter_callback implements H5A_iterate_cb {
- public int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data) {
+ public int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data)
+ {
idata id = new idata(name);
((H5A_iter_data)op_data).iterdata.add(id);
return 0;
}
}
try {
- attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
H5A_iterate_cb iter_cb = new H5A_iter_callback();
try {
- H5.H5Aiterate(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0L, iter_cb, iter_data);
+ H5.H5Aiterate(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0L, iter_cb,
+ iter_data);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Aiterate: " + err);
}
- assertFalse("H5Aiterate ",((H5A_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Aiterate "+((H5A_iter_data)iter_data).iterdata.size(),((H5A_iter_data)iter_data).iterdata.size()==4);
- assertTrue("H5Aiterate "+(((H5A_iter_data)iter_data).iterdata.get(0)).attr_name,(((H5A_iter_data)iter_data).iterdata.get(0)).attr_name.compareToIgnoreCase("attribute1")==0);
- assertTrue("H5Aiterate "+(((H5A_iter_data)iter_data).iterdata.get(1)).attr_name,(((H5A_iter_data)iter_data).iterdata.get(1)).attr_name.compareToIgnoreCase("attribute2")==0);
- assertTrue("H5Aiterate "+((idata)((H5A_iter_data)iter_data).iterdata.get(2)).attr_name,(((H5A_iter_data)iter_data).iterdata.get(2)).attr_name.compareToIgnoreCase("attribute3")==0);
- assertTrue("H5Aiterate "+((idata)((H5A_iter_data)iter_data).iterdata.get(3)).attr_name,((idata)((H5A_iter_data)iter_data).iterdata.get(3)).attr_name.compareToIgnoreCase("attribute4")==0);
+ assertFalse("H5Aiterate ", ((H5A_iter_data)iter_data).iterdata.isEmpty());
+ assertTrue("H5Aiterate " + ((H5A_iter_data)iter_data).iterdata.size(),
+ ((H5A_iter_data)iter_data).iterdata.size() == 4);
+ assertTrue(
+ "H5Aiterate " + (((H5A_iter_data)iter_data).iterdata.get(0)).attr_name,
+ (((H5A_iter_data)iter_data).iterdata.get(0)).attr_name.compareToIgnoreCase("attribute1") ==
+ 0);
+ assertTrue(
+ "H5Aiterate " + (((H5A_iter_data)iter_data).iterdata.get(1)).attr_name,
+ (((H5A_iter_data)iter_data).iterdata.get(1)).attr_name.compareToIgnoreCase("attribute2") ==
+ 0);
+ assertTrue(
+ "H5Aiterate " + ((idata)((H5A_iter_data)iter_data).iterdata.get(2)).attr_name,
+ (((H5A_iter_data)iter_data).iterdata.get(2)).attr_name.compareToIgnoreCase("attribute3") ==
+ 0);
+ assertTrue("H5Aiterate " + ((idata)((H5A_iter_data)iter_data).iterdata.get(3)).attr_name,
+ ((idata)((H5A_iter_data)iter_data).iterdata.get(3))
+ .attr_name.compareToIgnoreCase("attribute4") == 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1039,18 +1265,35 @@ public class TestH5A {
}
finally {
if (attr1_id > 0)
- try {H5.H5Aclose(attr1_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr1_id);
+ }
+ catch (Exception ex) {
+ }
if (attr2_id > 0)
- try {H5.H5Aclose(attr2_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr2_id);
+ }
+ catch (Exception ex) {
+ }
if (attr3_id > 0)
- try {H5.H5Aclose(attr3_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr3_id);
+ }
+ catch (Exception ex) {
+ }
if (attr4_id > 0)
- try {H5.H5Aclose(attr4_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr4_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Aiterate_by_name() {
+ public void testH5Aiterate_by_name()
+ {
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
long attr3_id = HDF5Constants.H5I_INVALID_HID;
@@ -1058,45 +1301,44 @@ public class TestH5A {
class idata {
public String attr_name = null;
- idata(String name) {
- this.attr_name = name;
- }
+ idata(String name) { this.attr_name = name; }
}
class H5A_iter_data implements H5A_iterate_t {
public ArrayList<idata> iterdata = new ArrayList<idata>();
}
H5A_iterate_t iter_data = new H5A_iter_data();
class H5A_iter_callback implements H5A_iterate_cb {
- public int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data) {
+ public int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data)
+ {
idata id = new idata(name);
((H5A_iter_data)op_data).iterdata.add(id);
return 0;
}
}
try {
- attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
- attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1",
- type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
H5A_iterate_cb iter_cb = new H5A_iter_callback();
try {
- H5.H5Aiterate_by_name(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT);
+ H5.H5Aiterate_by_name(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L,
+ iter_cb, iter_data, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Aiterate_by_name: " + err);
}
- assertFalse("H5Aiterate_by_name ",((H5A_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Aiterate_by_name "+((H5A_iter_data)iter_data).iterdata.size(),((H5A_iter_data)iter_data).iterdata.size()==4);
- assertTrue("H5Aiterate_by_name "+((idata)((H5A_iter_data)iter_data).iterdata.get(1)).attr_name,((idata)((H5A_iter_data)iter_data).iterdata.get(1)).attr_name.compareToIgnoreCase("attribute2")==0);
+ assertFalse("H5Aiterate_by_name ", ((H5A_iter_data)iter_data).iterdata.isEmpty());
+ assertTrue("H5Aiterate_by_name " + ((H5A_iter_data)iter_data).iterdata.size(),
+ ((H5A_iter_data)iter_data).iterdata.size() == 4);
+ assertTrue("H5Aiterate_by_name " + ((idata)((H5A_iter_data)iter_data).iterdata.get(1)).attr_name,
+ ((idata)((H5A_iter_data)iter_data).iterdata.get(1))
+ .attr_name.compareToIgnoreCase("attribute2") == 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1104,17 +1346,29 @@ public class TestH5A {
}
finally {
if (attr1_id > 0)
- try {H5.H5Aclose(attr1_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr1_id);
+ }
+ catch (Exception ex) {
+ }
if (attr2_id > 0)
- try {H5.H5Aclose(attr2_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr2_id);
+ }
+ catch (Exception ex) {
+ }
if (attr3_id > 0)
- try {H5.H5Aclose(attr3_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr3_id);
+ }
+ catch (Exception ex) {
+ }
if (attr4_id > 0)
- try {H5.H5Aclose(attr4_id);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(attr4_id);
+ }
+ catch (Exception ex) {
+ }
}
}
-
}
-
-
-
diff --git a/java/test/TestH5Arw.java b/java/test/TestH5Arw.java
index 8ce2fee..56ac7f4 100644
--- a/java/test/TestH5Arw.java
+++ b/java/test/TestH5Arw.java
@@ -33,76 +33,103 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Arw {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_INTS_FILE = "tintsattrs.h5";
private static final String H5_FLTS_FILE = "tfloatsattrs.h5";
- private static final int DIM_X = 8;
- private static final int DIM8_Y = 8;
- private static final int DIM16_Y = 16;
- private static final int DIM32_Y = 32;
- private static final int DIM64_Y = 64;
- private static final int DIM128_Y = 128;
- private static final String DATASETU08 = "DU08BITS";
- private static final String DATASETS08 = "DS08BITS";
- private static final String DATASETU16 = "DU16BITS";
- private static final String DATASETS16 = "DS16BITS";
- private static final String DATASETU32 = "DU32BITS";
- private static final String DATASETS32 = "DS32BITS";
- private static final String DATASETU64 = "DU64BITS";
- private static final String DATASETS64 = "DS64BITS";
- private static final String DATASETF32 = "DS32BITS";
- private static final String DATASETF64 = "DS64BITS";
- private static final String DATASETF128 = "DS128BITS";
- private static final int RANK = 2;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5aid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
-
- private final void _closeH5file() throws HDF5LibraryException {
+ private static final int DIM_X = 8;
+ private static final int DIM8_Y = 8;
+ private static final int DIM16_Y = 16;
+ private static final int DIM32_Y = 32;
+ private static final int DIM64_Y = 64;
+ private static final int DIM128_Y = 128;
+ private static final String DATASETU08 = "DU08BITS";
+ private static final String DATASETS08 = "DS08BITS";
+ private static final String DATASETU16 = "DU16BITS";
+ private static final String DATASETS16 = "DS16BITS";
+ private static final String DATASETU32 = "DU32BITS";
+ private static final String DATASETS32 = "DS32BITS";
+ private static final String DATASETU64 = "DU64BITS";
+ private static final String DATASETS64 = "DS64BITS";
+ private static final String DATASETF32 = "DS32BITS";
+ private static final String DATASETF64 = "DS64BITS";
+ private static final String DATASETF128 = "DS128BITS";
+ private static final int RANK = 2;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5aid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+
+ private final void _closeH5file() throws HDF5LibraryException
+ {
if (H5aid >= 0)
- try {H5.H5Aclose(H5aid);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(H5aid);
+ }
+ catch (Exception ex) {
+ }
if (H5did >= 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
- public void openH5file(String filename, String dsetname) {
- try {
- H5fid = H5.H5Fopen(filename,
- HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5Arw._openH5file: " + err);
- }
- assertTrue("TestH5Arw._openH5file: H5.H5Fopen: ", H5fid >= 0);
- try {
- H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5Arw._openH5file: " + err);
- }
- assertTrue("TestH5Arw._openH5file: H5.H5Dopen: ", H5did >= 0);
- try {
- H5aid = H5.H5Aopen(H5did, dsetname, HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5Arw._openH5file: " + err);
- }
- assertTrue("TestH5Arw._openH5file: H5.H5Aopen: ", H5aid >= 0);
+ public void openH5file(String filename, String dsetname)
+ {
+ try {
+ H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5Arw._openH5file: " + err);
+ }
+ assertTrue("TestH5Arw._openH5file: H5.H5Fopen: ", H5fid >= 0);
+ try {
+ H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5Arw._openH5file: " + err);
+ }
+ assertTrue("TestH5Arw._openH5file: H5.H5Dopen: ", H5did >= 0);
+ try {
+ H5aid = H5.H5Aopen(H5did, dsetname, HDF5Constants.H5P_DEFAULT);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5Arw._openH5file: " + err);
+ }
+ assertTrue("TestH5Arw._openH5file: H5.H5Aopen: ", H5aid >= 0);
}
@After
- public void closeH5file() throws HDF5LibraryException {
+ public void closeH5file() throws HDF5LibraryException
+ {
if (H5aid >= 0)
- try {H5.H5Aclose(H5aid);} catch (Exception ex) {}
+ try {
+ H5.H5Aclose(H5aid);
+ }
+ catch (Exception ex) {
+ }
if (H5did >= 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
H5fid = HDF5Constants.H5I_INVALID_HID;
H5did = HDF5Constants.H5I_INVALID_HID;
H5aid = HDF5Constants.H5I_INVALID_HID;
@@ -110,14 +137,15 @@ public class TestH5Arw {
}
@Before
- public void verifyCount()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
+ public void verifyCount() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@Test
- public void testH5Aread_8bit_ints() {
+ public void testH5Aread_8bit_ints()
+ {
byte[][] attr_data = new byte[DIM_X][DIM8_Y];
try {
@@ -182,7 +210,8 @@ public class TestH5Arw {
}
@Test
- public void testH5Aread_16bit_ints() {
+ public void testH5Aread_16bit_ints()
+ {
short[][] attr_data = new short[DIM_X][DIM16_Y];
try {
@@ -247,7 +276,8 @@ public class TestH5Arw {
}
@Test
- public void testH5Aread_32bit_ints() {
+ public void testH5Aread_32bit_ints()
+ {
int[][] attr_data = new int[DIM_X][DIM16_Y];
try {
@@ -312,7 +342,8 @@ public class TestH5Arw {
}
@Test
- public void testH5Aread_64bit_ints() {
+ public void testH5Aread_64bit_ints()
+ {
long[][] attr_data = new long[DIM_X][DIM64_Y];
try {
@@ -377,7 +408,8 @@ public class TestH5Arw {
}
@Test
- public void testH5Aread_32bit_floats() {
+ public void testH5Aread_32bit_floats()
+ {
float[][] attr_data = new float[DIM_X][DIM32_Y];
try {
@@ -401,7 +433,8 @@ public class TestH5Arw {
}
@Test
- public void testH5Aread_64bit_floats() {
+ public void testH5Aread_64bit_floats()
+ {
double[][] attr_data = new double[DIM_X][DIM64_Y];
try {
@@ -425,7 +458,8 @@ public class TestH5Arw {
}
@Test
- public void testH5Aread_128bit_floats() {
+ public void testH5Aread_128bit_floats()
+ {
byte[][][] attr_data = new byte[DIM_X][DIM128_Y][8];
try {
@@ -445,5 +479,4 @@ public class TestH5Arw {
fail("testH5Aread_128bit_floats: H5Aread: " + err);
}
}
-
}
diff --git a/java/test/TestH5D.java b/java/test/TestH5D.java
index dac3a9c..4bab1a9 100644
--- a/java/test/TestH5D.java
+++ b/java/test/TestH5D.java
@@ -33,46 +33,50 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5D {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_FILE = "testD.h5";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
- private static final int RANK = 2;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5faplid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5dtid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
- long H5did0 = HDF5Constants.H5I_INVALID_HID;
- long H5dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] H5dims = { DIM_X, DIM_Y };
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
+ private static final int RANK = 2;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5faplid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5dtid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+ long H5did0 = HDF5Constants.H5I_INVALID_HID;
+ long H5dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] H5dims = {DIM_X, DIM_Y};
// Values for the status of space allocation
enum H5D_space_status {
- H5D_SPACE_STATUS_ERROR(-1), H5D_SPACE_STATUS_NOT_ALLOCATED(0), H5D_SPACE_STATUS_PART_ALLOCATED(
- 1), H5D_SPACE_STATUS_ALLOCATED(2);
+ H5D_SPACE_STATUS_ERROR(-1),
+ H5D_SPACE_STATUS_NOT_ALLOCATED(0),
+ H5D_SPACE_STATUS_PART_ALLOCATED(1),
+ H5D_SPACE_STATUS_ALLOCATED(2);
private int code;
- H5D_space_status(int space_status) {
- this.code = space_status;
- }
+ H5D_space_status(int space_status) { this.code = space_status; }
- public int getCode() {
- return this.code;
- }
+ public int getCode() { return this.code; }
}
- private final void _deleteFile(String filename) {
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
- try {file.delete();}
- catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
- private final void _createPDataset(long fid, long dsid, String name, long dcpl_val) {
+ private final void _createPDataset(long fid, long dsid, String name, long dcpl_val)
+ {
try {
H5dcpl_id = H5.H5Pcreate(dcpl_val);
@@ -94,9 +98,8 @@ public class TestH5D {
}
try {
- H5did0 = H5.H5Dcreate(fid, name,
- HDF5Constants.H5T_STD_I32BE, dsid,
- HDF5Constants.H5P_DEFAULT, H5dcpl_id, HDF5Constants.H5P_DEFAULT);
+ H5did0 = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+ H5dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -105,7 +108,8 @@ public class TestH5D {
assertTrue("TestH5D._createPDataset.H5Dcreate: ", H5did0 >= 0);
}
- private final void _createChunkDataset(long fid, long dsid, String name, long dapl) {
+ private final void _createChunkDataset(long fid, long dsid, String name, long dapl)
+ {
try {
H5dcpl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE);
@@ -127,9 +131,8 @@ public class TestH5D {
}
try {
- H5did = H5.H5Dcreate(fid, name,
- HDF5Constants.H5T_STD_I32BE, dsid,
- HDF5Constants.H5P_DEFAULT, H5dcpl_id, dapl);
+ H5did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+ H5dcpl_id, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -138,11 +141,11 @@ public class TestH5D {
assertTrue("TestH5D._createChunkDataset.H5Dcreate: ", H5did >= 0);
}
- private final void _createDataset(long fid, long dsid, String name, long dapl) {
+ private final void _createDataset(long fid, long dsid, String name, long dapl)
+ {
try {
- H5did = H5.H5Dcreate(fid, name,
- HDF5Constants.H5T_STD_I32BE, dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+ H5did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -151,7 +154,8 @@ public class TestH5D {
assertTrue("TestH5D._createDataset.H5Dcreate: ", H5did >= 0);
}
- private final void _createVLDataset(long fid, long dsid, String name, long dapl) {
+ private final void _createVLDataset(long fid, long dsid, String name, long dapl)
+ {
try {
H5dtid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
}
@@ -169,8 +173,8 @@ public class TestH5D {
fail("H5.H5Tset_size: " + err);
}
try {
- H5did = H5.H5Dcreate(fid, name, H5dtid, dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+ H5did = H5.H5Dcreate(fid, name, H5dtid, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -179,99 +183,153 @@ public class TestH5D {
assertTrue("TestH5D._createVLDataset.H5Dcreate: ", H5did >= 0);
}
- private final void _closeH5file() throws HDF5LibraryException {
+ private final void _closeH5file() throws HDF5LibraryException
+ {
if (H5dcpl_id >= 0)
- try {H5.H5Pclose(H5dcpl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(H5dcpl_id);
+ }
+ catch (Exception ex) {
+ }
if (H5did0 >= 0)
- try {H5.H5Dclose(H5did0);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did0);
+ }
+ catch (Exception ex) {
+ }
if (H5did >= 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5dtid > 0)
- try {H5.H5Tclose(H5dtid);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(H5dtid);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
- private final void _openH5file(String filename, String dsetname, long dapl) {
- try {
- H5fid = H5.H5Fopen(filename,
- HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5D._openH5file: " + err);
- }
- assertTrue("TestH5D._openH5file: H5.H5Fopen: ",H5fid >= 0);
- try {
- H5did = H5.H5Dopen(H5fid, dsetname, dapl);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5D._openH5file: " + err);
- }
- assertTrue("TestH5D._openH5file: H5.H5Dopen: ",H5did >= 0);
- try {
- H5dsid = H5.H5Dget_space(H5did);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5D._openH5file: " + err);
- }
- assertTrue("TestH5D._openH5file: H5.H5Screate_simple: ",H5dsid > 0);
+ private final void _openH5file(String filename, String dsetname, long dapl)
+ {
+ try {
+ H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5D._openH5file: " + err);
+ }
+ assertTrue("TestH5D._openH5file: H5.H5Fopen: ", H5fid >= 0);
+ try {
+ H5did = H5.H5Dopen(H5fid, dsetname, dapl);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5D._openH5file: " + err);
+ }
+ assertTrue("TestH5D._openH5file: H5.H5Dopen: ", H5did >= 0);
+ try {
+ H5dsid = H5.H5Dget_space(H5did);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5D._openH5file: " + err);
+ }
+ assertTrue("TestH5D._openH5file: H5.H5Screate_simple: ", H5dsid > 0);
}
@Before
- public void createH5file()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
- System.out.print(testname.getMethodName());
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
+ System.out.print(testname.getMethodName());
try {
H5faplid = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS);
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, H5faplid);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, H5faplid);
H5dsid = H5.H5Screate_simple(RANK, H5dims, null);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5D.createH5file: " + err);
}
- assertTrue("TestH5D.createH5file: H5.H5Fcreate: ",H5fid >= 0);
- assertTrue("TestH5D.createH5file: H5.H5Screate_simple: ",H5dsid >= 0);
+ assertTrue("TestH5D.createH5file: H5.H5Fcreate: ", H5fid >= 0);
+ assertTrue("TestH5D.createH5file: H5.H5Screate_simple: ", H5dsid >= 0);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5dcpl_id >= 0)
- try {H5.H5Pclose(H5dcpl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(H5dcpl_id);
+ }
+ catch (Exception ex) {
+ }
if (H5did0 >= 0)
- try {H5.H5Dclose(H5did0);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did0);
+ }
+ catch (Exception ex) {
+ }
if (H5did >= 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5dtid > 0)
- try {H5.H5Tclose(H5dtid);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(H5dtid);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5faplid >= 0)
- try {H5.H5Pclose(H5faplid);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(H5faplid);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
_deleteFile(H5_FILE);
System.out.println();
}
@Test
- public void testH5Dcreate() {
+ public void testH5Dcreate()
+ {
long dataset_id = HDF5Constants.H5I_INVALID_HID;
try {
- dataset_id = H5.H5Dcreate(H5fid, "dset",
- HDF5Constants.H5T_STD_I32BE, H5dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id =
+ H5.H5Dcreate(H5fid, "dset", HDF5Constants.H5T_STD_I32BE, H5dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
@@ -290,11 +348,12 @@ public class TestH5D {
}
@Test
- public void testH5Dcreate_anon() {
+ public void testH5Dcreate_anon()
+ {
long dataset_id = HDF5Constants.H5I_INVALID_HID;
try {
- dataset_id = H5.H5Dcreate_anon(H5fid, HDF5Constants.H5T_STD_I32BE,
- H5dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id = H5.H5Dcreate_anon(H5fid, HDF5Constants.H5T_STD_I32BE, H5dsid,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
err.printStackTrace();
@@ -313,13 +372,14 @@ public class TestH5D {
}
@Test
- public void testH5Dopen() {
+ public void testH5Dopen()
+ {
long dataset_id = HDF5Constants.H5I_INVALID_HID;
_createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
try {
H5.H5Dclose(H5did);
- H5did = HDF5Constants.H5I_INVALID_HID;
+ H5did = HDF5Constants.H5I_INVALID_HID;
dataset_id = H5.H5Dopen(H5fid, "dset", HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
@@ -339,7 +399,8 @@ public class TestH5D {
}
@Test
- public void testH5Dget_storage_size_empty() {
+ public void testH5Dget_storage_size_empty()
+ {
long storage_size = 0;
_createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
@@ -354,10 +415,11 @@ public class TestH5D {
}
@Test
- public void testH5Dget_storage_size() {
+ public void testH5Dget_storage_size()
+ {
long storage_size = 0;
int[][] dset_data = new int[DIM_X][DIM_Y];
- int FILLVAL = 99;
+ int FILLVAL = 99;
_createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
// Initialize the dataset.
@@ -367,9 +429,8 @@ public class TestH5D {
try {
if (H5did >= 0)
- H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data[0]);
+ H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, dset_data[0]);
}
catch (Exception e) {
e.printStackTrace();
@@ -382,21 +443,22 @@ public class TestH5D {
err.printStackTrace();
fail("testH5Dget_storage_size: " + err);
}
- assertTrue("testH5Dget_storage_size: "+storage_size, storage_size == DIM_X*DIM_Y*4);
+ assertTrue("testH5Dget_storage_size: " + storage_size, storage_size == DIM_X * DIM_Y * 4);
}
@Test
- public void testH5Dget_access_plist() {
- long dapl_id = HDF5Constants.H5I_INVALID_HID;
- long test_dapl_id = HDF5Constants.H5I_INVALID_HID;
- int[] mdc_nelmts1 = {0};
- int[] mdc_nelmts2 = {0};
+ public void testH5Dget_access_plist()
+ {
+ long dapl_id = HDF5Constants.H5I_INVALID_HID;
+ long test_dapl_id = HDF5Constants.H5I_INVALID_HID;
+ int[] mdc_nelmts1 = {0};
+ int[] mdc_nelmts2 = {0};
long[] rdcc_nelmts1 = {0};
long[] rdcc_nelmts2 = {0};
long[] rdcc_nbytes1 = {0};
long[] rdcc_nbytes2 = {0};
- double[] rdcc_w01 = {0};
- double[] rdcc_w02 = {0};
+ double[] rdcc_w01 = {0};
+ double[] rdcc_w02 = {0};
try {
test_dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
@@ -442,14 +504,15 @@ public class TestH5D {
catch (Exception err) {
err.printStackTrace();
}
- assertTrue("testH5Dget_access_plist: ", rdcc_nelmts2==rdcc_nelmts2 && rdcc_nbytes2==rdcc_nbytes2);
+ assertTrue("testH5Dget_access_plist: ", rdcc_nelmts2 == rdcc_nelmts2 && rdcc_nbytes2 == rdcc_nbytes2);
}
@Test
- public void testH5Dget_space_status() {
+ public void testH5Dget_space_status()
+ {
int[][] write_dset_data = new int[DIM_X][DIM_Y];
- int space_status = -1;
- int space_status0 = -1;
+ int space_status = -1;
+ int space_status0 = -1;
// Initialize the dataset.
for (int indx = 0; indx < DIM_X; indx++)
@@ -466,7 +529,8 @@ public class TestH5D {
catch (Exception e) {
e.printStackTrace();
}
- assertTrue("testH5Dget_space_status0 - H5.H5Dget_space_status: ", space_status0 == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode());
+ assertTrue("testH5Dget_space_status0 - H5.H5Dget_space_status: ",
+ space_status0 == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode());
// Retrieve and print space status and storage size for dset.
try {
@@ -475,12 +539,12 @@ public class TestH5D {
catch (Exception e) {
e.printStackTrace();
}
- assertFalse("testH5Dget_space_status - H5.H5Dget_space_status: ", space_status == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode());
+ assertFalse("testH5Dget_space_status - H5.H5Dget_space_status: ",
+ space_status == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode());
// Write the data to the dataset.
try {
- H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, write_dset_data);
}
catch (Exception e) {
@@ -494,16 +558,18 @@ public class TestH5D {
catch (Exception e) {
e.printStackTrace();
}
- assertTrue("testH5Dget_space_status - H5.H5Dget_space_status: ", space_status == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode());
+ assertTrue("testH5Dget_space_status - H5.H5Dget_space_status: ",
+ space_status == H5D_space_status.H5D_SPACE_STATUS_ALLOCATED.getCode());
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dget_space_closed() throws Throwable {
+ public void testH5Dget_space_closed() throws Throwable
+ {
long dataset_id = HDF5Constants.H5I_INVALID_HID;
try {
- dataset_id = H5.H5Dcreate(H5fid, "dset",
- HDF5Constants.H5T_STD_I32BE, H5dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id =
+ H5.H5Dcreate(H5fid, "dset", HDF5Constants.H5T_STD_I32BE, H5dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -516,7 +582,8 @@ public class TestH5D {
}
@Test
- public void testH5Dget_space() {
+ public void testH5Dget_space()
+ {
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
_createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
@@ -540,12 +607,13 @@ public class TestH5D {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dget_type_closed() throws Throwable {
+ public void testH5Dget_type_closed() throws Throwable
+ {
long dataset_id = HDF5Constants.H5I_INVALID_HID;
try {
- dataset_id = H5.H5Dcreate(H5fid, "dset",
- HDF5Constants.H5T_STD_I32BE, H5dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id =
+ H5.H5Dcreate(H5fid, "dset", HDF5Constants.H5T_STD_I32BE, H5dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -558,7 +626,8 @@ public class TestH5D {
}
@Test
- public void testH5Dget_type() {
+ public void testH5Dget_type()
+ {
long datatype_id = HDF5Constants.H5I_INVALID_HID;
_createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
@@ -582,9 +651,10 @@ public class TestH5D {
}
@Test
- public void testH5Dget_offset() {
+ public void testH5Dget_offset()
+ {
int[][] write_dset_data = new int[DIM_X][DIM_Y];
- long dset_address = 0;
+ long dset_address = 0;
_createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
try {
@@ -600,8 +670,7 @@ public class TestH5D {
}
// Write the data to the dataset.
try {
- H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, write_dset_data);
}
catch (Exception e) {
@@ -621,15 +690,16 @@ public class TestH5D {
}
@Test
- public void testH5Dfill_null() {
- int[] buf_data = new int[DIM_X*DIM_Y];
+ public void testH5Dfill_null()
+ {
+ int[] buf_data = new int[DIM_X * DIM_Y];
// Initialize memory buffer
for (int indx = 0; indx < DIM_X; indx++)
for (int jndx = 0; jndx < DIM_Y; jndx++) {
buf_data[(indx * DIM_Y) + jndx] = indx * jndx - jndx;
}
- byte[] buf_array = HDFNativeData.intToByte(0, DIM_X*DIM_Y, buf_data);
+ byte[] buf_array = HDFNativeData.intToByte(0, DIM_X * DIM_Y, buf_data);
// Fill selection in memory
try {
@@ -644,12 +714,13 @@ public class TestH5D {
// Verify memory buffer the hard way
for (int indx = 0; indx < DIM_X; indx++)
for (int jndx = 0; jndx < DIM_Y; jndx++)
- assertTrue("H5.H5Dfill: [" + indx+","+jndx + "] ", buf_data[(indx * DIM_Y) + jndx] == 0);
+ assertTrue("H5.H5Dfill: [" + indx + "," + jndx + "] ", buf_data[(indx * DIM_Y) + jndx] == 0);
}
@Test
- public void testH5Dfill() {
- int[] buf_data = new int[DIM_X*DIM_Y];
+ public void testH5Dfill()
+ {
+ int[] buf_data = new int[DIM_X * DIM_Y];
byte[] fill_value = HDFNativeData.intToByte(254);
// Initialize memory buffer
@@ -657,11 +728,12 @@ public class TestH5D {
for (int jndx = 0; jndx < DIM_Y; jndx++) {
buf_data[(indx * DIM_Y) + jndx] = indx * jndx - jndx;
}
- byte[] buf_array = HDFNativeData.intToByte(0, DIM_X*DIM_Y, buf_data);
+ byte[] buf_array = HDFNativeData.intToByte(0, DIM_X * DIM_Y, buf_data);
// Fill selection in memory
try {
- H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid);
+ H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT,
+ H5dsid);
}
catch (Exception err) {
err.printStackTrace();
@@ -672,46 +744,51 @@ public class TestH5D {
// Verify memory buffer the hard way
for (int indx = 0; indx < DIM_X; indx++)
for (int jndx = 0; jndx < DIM_Y; jndx++)
- assertTrue("H5.H5Dfill: [" + indx+","+jndx + "] ", buf_data[(indx * DIM_Y) + jndx] == 254);
+ assertTrue("H5.H5Dfill: [" + indx + "," + jndx + "] ",
+ buf_data[(indx * DIM_Y) + jndx] == 254);
}
@Test
- public void testH5Diterate() {
+ public void testH5Diterate()
+ {
final int SPACE_RANK = 2;
final int SPACE_FILL = 254;
class H5D_iter_data implements H5D_iterate_t {
- public int fill_value; /* The fill value to check */
- public long fill_curr_coord; /* Current coordinate to examine */
- public long[] fill_coords; /* Pointer to selection's coordinates */
+ public int fill_value; /* The fill value to check */
+ public long fill_curr_coord; /* Current coordinate to examine */
+ public long[] fill_coords; /* Pointer to selection's coordinates */
}
H5D_iterate_t iter_data = new H5D_iter_data();
class H5D_iter_callback implements H5D_iterate_cb {
- public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_iterate_t op_data) {
- //Check value in current buffer location
+ public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_iterate_t op_data)
+ {
+ // Check value in current buffer location
int element = HDFNativeData.byteToInt(elem_buf, 0);
- if(element != ((H5D_iter_data)op_data).fill_value)
+ if (element != ((H5D_iter_data)op_data).fill_value)
return -1;
- //Check number of dimensions
- if(ndim != SPACE_RANK)
- return(-1);
- //Check Coordinates
+ // Check number of dimensions
+ if (ndim != SPACE_RANK)
+ return (-1);
+ // Check Coordinates
long[] fill_coords = new long[2];
- fill_coords[0] = ((H5D_iter_data)op_data).fill_coords[(int) (2 * ((H5D_iter_data)op_data).fill_curr_coord)];
- fill_coords[1] = ((H5D_iter_data)op_data).fill_coords[(int) (2 * ((H5D_iter_data)op_data).fill_curr_coord) + 1];
+ fill_coords[0] =
+ ((H5D_iter_data)op_data).fill_coords[(int)(2 * ((H5D_iter_data)op_data).fill_curr_coord)];
+ fill_coords[1] = ((H5D_iter_data)op_data)
+ .fill_coords[(int)(2 * ((H5D_iter_data)op_data).fill_curr_coord) + 1];
((H5D_iter_data)op_data).fill_curr_coord++;
- if(fill_coords[0] != point[0])
- return(-1);
- if(fill_coords[1] != point[1])
- return(-1);
+ if (fill_coords[0] != point[0])
+ return (-1);
+ if (fill_coords[1] != point[1])
+ return (-1);
- return(0);
+ return (0);
}
}
- int[] buf_data = new int[DIM_X*DIM_Y];
+ int[] buf_data = new int[DIM_X * DIM_Y];
byte[] fill_value = HDFNativeData.intToByte(SPACE_FILL);
// Initialize memory buffer
@@ -719,11 +796,12 @@ public class TestH5D {
for (int jndx = 0; jndx < DIM_Y; jndx++) {
buf_data[(indx * DIM_Y) + jndx] = indx * jndx - jndx;
}
- byte[] buf_array = HDFNativeData.intToByte(0, DIM_X*DIM_Y, buf_data);
+ byte[] buf_array = HDFNativeData.intToByte(0, DIM_X * DIM_Y, buf_data);
// Fill selection in memory
try {
- H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid);
+ H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT,
+ H5dsid);
}
catch (Exception err) {
err.printStackTrace();
@@ -731,19 +809,20 @@ public class TestH5D {
}
// Initialize the iterator structure
- ((H5D_iter_data)iter_data).fill_value = SPACE_FILL;
+ ((H5D_iter_data)iter_data).fill_value = SPACE_FILL;
((H5D_iter_data)iter_data).fill_curr_coord = 0;
// Set the coordinates of the selection
- ((H5D_iter_data)iter_data).fill_coords = new long[DIM_X*DIM_Y*SPACE_RANK]; /* Coordinates of selection */
+ ((H5D_iter_data)iter_data).fill_coords =
+ new long[DIM_X * DIM_Y * SPACE_RANK]; /* Coordinates of selection */
for (int indx = 0; indx < DIM_X; indx++)
for (int jndx = 0; jndx < DIM_Y; jndx++) {
- ((H5D_iter_data)iter_data).fill_coords[2*(indx * DIM_Y + jndx)] = indx;
- ((H5D_iter_data)iter_data).fill_coords[2*(indx * DIM_Y + jndx) + 1] = jndx;
+ ((H5D_iter_data)iter_data).fill_coords[2 * (indx * DIM_Y + jndx)] = indx;
+ ((H5D_iter_data)iter_data).fill_coords[2 * (indx * DIM_Y + jndx) + 1] = jndx;
} /* end for */
// Iterate through selection, verifying correct data
H5D_iterate_cb iter_cb = new H5D_iter_callback();
- int op_status = -1;
+ int op_status = -1;
try {
op_status = H5.H5Diterate(buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid, iter_cb, iter_data);
}
@@ -755,47 +834,51 @@ public class TestH5D {
}
@Test
- public void testH5Diterate_write() {
+ public void testH5Diterate_write()
+ {
final int SPACE_RANK = 2;
final int SPACE_FILL = 254;
class H5D_iter_data implements H5D_iterate_t {
- public int fill_value; /* The fill value to check */
- public long fill_curr_coord; /* Current coordinate to examine */
- public long[] fill_coords; /* Pointer to selection's coordinates */
+ public int fill_value; /* The fill value to check */
+ public long fill_curr_coord; /* Current coordinate to examine */
+ public long[] fill_coords; /* Pointer to selection's coordinates */
}
H5D_iterate_t iter_data = new H5D_iter_data();
class H5D_iter_callback implements H5D_iterate_cb {
- public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_iterate_t op_data) {
- //Check value in current buffer location
+ public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_iterate_t op_data)
+ {
+ // Check value in current buffer location
int element = HDFNativeData.byteToInt(elem_buf, 0);
- if(element != ((H5D_iter_data)op_data).fill_value)
+ if (element != ((H5D_iter_data)op_data).fill_value)
return -1;
- //Check number of dimensions
- if(ndim != SPACE_RANK)
- return(-1);
- //Check Coordinates
+ // Check number of dimensions
+ if (ndim != SPACE_RANK)
+ return (-1);
+ // Check Coordinates
long[] fill_coords = new long[2];
- fill_coords[0] = ((H5D_iter_data)op_data).fill_coords[(int) (2 * ((H5D_iter_data)op_data).fill_curr_coord)];
- fill_coords[1] = ((H5D_iter_data)op_data).fill_coords[(int) (2 * ((H5D_iter_data)op_data).fill_curr_coord) + 1];
+ fill_coords[0] =
+ ((H5D_iter_data)op_data).fill_coords[(int)(2 * ((H5D_iter_data)op_data).fill_curr_coord)];
+ fill_coords[1] = ((H5D_iter_data)op_data)
+ .fill_coords[(int)(2 * ((H5D_iter_data)op_data).fill_curr_coord) + 1];
((H5D_iter_data)op_data).fill_curr_coord++;
- if(fill_coords[0] != point[0])
- return(-1);
- if(fill_coords[1] != point[1])
- return(-1);
+ if (fill_coords[0] != point[0])
+ return (-1);
+ if (fill_coords[1] != point[1])
+ return (-1);
element -= 128;
byte[] new_elembuf = HDFNativeData.intToByte(element);
- elem_buf[0] = new_elembuf[0];
- elem_buf[1] = new_elembuf[1];
- elem_buf[2] = new_elembuf[2];
- elem_buf[3] = new_elembuf[3];
- return(0);
+ elem_buf[0] = new_elembuf[0];
+ elem_buf[1] = new_elembuf[1];
+ elem_buf[2] = new_elembuf[2];
+ elem_buf[3] = new_elembuf[3];
+ return (0);
}
}
- int[] buf_data = new int[DIM_X*DIM_Y];
+ int[] buf_data = new int[DIM_X * DIM_Y];
byte[] fill_value = HDFNativeData.intToByte(SPACE_FILL);
// Initialize memory buffer
@@ -803,11 +886,12 @@ public class TestH5D {
for (int jndx = 0; jndx < DIM_Y; jndx++) {
buf_data[(indx * DIM_Y) + jndx] = indx * jndx - jndx;
}
- byte[] buf_array = HDFNativeData.intToByte(0, DIM_X*DIM_Y, buf_data);
+ byte[] buf_array = HDFNativeData.intToByte(0, DIM_X * DIM_Y, buf_data);
// Fill selection in memory
try {
- H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid);
+ H5.H5Dfill(fill_value, HDF5Constants.H5T_NATIVE_UINT, buf_array, HDF5Constants.H5T_NATIVE_UINT,
+ H5dsid);
}
catch (Exception err) {
err.printStackTrace();
@@ -815,19 +899,20 @@ public class TestH5D {
}
// Initialize the iterator structure
- ((H5D_iter_data)iter_data).fill_value = SPACE_FILL;
+ ((H5D_iter_data)iter_data).fill_value = SPACE_FILL;
((H5D_iter_data)iter_data).fill_curr_coord = 0;
// Set the coordinates of the selection
- ((H5D_iter_data)iter_data).fill_coords = new long[DIM_X*DIM_Y*SPACE_RANK]; /* Coordinates of selection */
+ ((H5D_iter_data)iter_data).fill_coords =
+ new long[DIM_X * DIM_Y * SPACE_RANK]; /* Coordinates of selection */
for (int indx = 0; indx < DIM_X; indx++)
for (int jndx = 0; jndx < DIM_Y; jndx++) {
- ((H5D_iter_data)iter_data).fill_coords[2*(indx * DIM_Y + jndx)] = indx;
- ((H5D_iter_data)iter_data).fill_coords[2*(indx * DIM_Y + jndx) + 1] = jndx;
+ ((H5D_iter_data)iter_data).fill_coords[2 * (indx * DIM_Y + jndx)] = indx;
+ ((H5D_iter_data)iter_data).fill_coords[2 * (indx * DIM_Y + jndx) + 1] = jndx;
} /* end for */
// Iterate through selection, verifying correct data
H5D_iterate_cb iter_cb = new H5D_iter_callback();
- int op_status = -1;
+ int op_status = -1;
try {
op_status = H5.H5Diterate(buf_array, HDF5Constants.H5T_NATIVE_UINT, H5dsid, iter_cb, iter_data);
}
@@ -842,29 +927,27 @@ public class TestH5D {
// Verify memory buffer the hard way
for (int indx = 0; indx < DIM_X; indx++)
for (int jndx = 0; jndx < DIM_Y; jndx++)
- assertTrue("H5.H5Diterate: [" + indx+","+jndx + "] "+buf_data[(indx * DIM_Y) + jndx], buf_data[(indx * DIM_Y) + jndx] == 126);
+ assertTrue("H5.H5Diterate: [" + indx + "," + jndx + "] " + buf_data[(indx * DIM_Y) + jndx],
+ buf_data[(indx * DIM_Y) + jndx] == 126);
}
@Test
- public void testH5Dvlen_get_buf_size() {
- String[] str_data = { "Parting", "is such", "sweet", "sorrow.",
- "Testing", "one", "two", "three.",
- "Dog,", "man's", "best", "friend.",
- "Diamonds", "are", "a", "girls!",
- "S A", "T U R", "D A Y", "night",
- "That's", "all", "folks", "!!!" };
- long vl_size = -1; /* Number of bytes used */
+ public void testH5Dvlen_get_buf_size()
+ {
+ String[] str_data = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.",
+ "Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!",
+ "S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"};
+ long vl_size = -1; /* Number of bytes used */
long str_data_bytes = 0;
for (int idx = 0; idx < str_data.length; idx++)
- str_data_bytes += str_data[idx].length() + 1; //Account for terminating null
+ str_data_bytes += str_data[idx].length() + 1; // Account for terminating null
_createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
try {
if ((H5did >= 0) && (H5dtid >= 0))
- H5.H5Dwrite_VLStrings(H5did, H5dtid,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, str_data);
+ H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, str_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -879,63 +962,55 @@ public class TestH5D {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Dvlen_read_invalid_buffer() throws Throwable {
- String[] str_data = { "Parting", "is such", "sweet", "sorrow.",
- "Testing", "one", "two", "three.",
- "Dog,", "man's", "best", "friend.",
- "Diamonds", "are", "a", "girls!",
- "S A", "T U R", "D A Y", "night",
- "That's", "all", "folks", "!!!" };
- byte[] read_data = new byte[512];
+ public void testH5Dvlen_read_invalid_buffer() throws Throwable
+ {
+ String[] str_data = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.",
+ "Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!",
+ "S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"};
+ byte[] read_data = new byte[512];
_createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
try {
- H5.H5Dwrite_VLStrings(H5did, H5dtid,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, str_data);
+ H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, str_data);
}
catch (Exception e) {
e.printStackTrace();
}
- H5.H5Dread(H5did, H5dtid,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, read_data);
+ H5.H5Dread(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT,
+ read_data);
}
@Test
- public void testH5Dvlen_write_read() {
- String[] str_wdata = { "Parting", "is such", "sweet", "sorrow.",
- "Testing", "one", "two", "three.",
- "Dog,", "man's", "best", "friend.",
- "Diamonds", "are", "a", "girls!",
- "S A", "T U R", "D A Y", "night",
- "That's", "all", "folks", "!!!" };
+ public void testH5Dvlen_write_read()
+ {
+ String[] str_wdata = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.",
+ "Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!",
+ "S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"};
String[] str_rdata = new String[DIM_X * DIM_Y];
_createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
try {
if ((H5did >= 0) && (H5dtid >= 0))
- H5.H5Dwrite_VLStrings(H5did, H5dtid,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, str_wdata);
+ H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, str_wdata);
}
catch (Exception e) {
e.printStackTrace();
}
try {
if ((H5did >= 0) && (H5dtid >= 0))
- H5.H5Dread_VLStrings(H5did, H5dtid,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, str_rdata);
+ H5.H5Dread_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, str_rdata);
}
catch (Exception e) {
e.printStackTrace();
}
for (int v = 0; v < DIM_X * DIM_Y; v++)
- assertTrue("testH5Dvlen_write_read " + str_wdata[v] + " == " + str_rdata[v], str_wdata[v] == str_wdata[v]);
+ assertTrue("testH5Dvlen_write_read " + str_wdata[v] + " == " + str_rdata[v],
+ str_wdata[v] == str_wdata[v]);
}
-
}
diff --git a/java/test/TestH5Dparams.java b/java/test/TestH5Dparams.java
index 3661139..e42e10b 100644
--- a/java/test/TestH5Dparams.java
+++ b/java/test/TestH5Dparams.java
@@ -13,6 +13,7 @@
package test;
import static org.junit.Assert.assertTrue;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
@@ -23,108 +24,128 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Dparams {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
@Before
- public void checkOpenIDs() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void checkOpenIDs()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@After
- public void nextTestName() {
+ public void nextTestName()
+ {
System.out.println();
}
- @Test//(expected = HDF5LibraryException.class)
- public void testH5Dclose_invalid() throws Throwable {
+ @Test //(expected = HDF5LibraryException.class)
+ public void testH5Dclose_invalid() throws Throwable
+ {
long did = H5.H5Dclose(-1);
assertTrue(did == 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Dcreate_null() throws Throwable {
+ public void testH5Dcreate_null() throws Throwable
+ {
H5.H5Dcreate(-1, null, 0, 0, 0, 0, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dcreate_invalid() throws Throwable {
+ public void testH5Dcreate_invalid() throws Throwable
+ {
H5.H5Dcreate(-1, "Bogus", -1, -1, -1, -1, -1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dcreate_anon_invalid() throws Throwable {
+ public void testH5Dcreate_anon_invalid() throws Throwable
+ {
H5.H5Dcreate_anon(-1, -1, -1, -1, -1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dget_access_plist_invalid() throws Throwable {
+ public void testH5Dget_access_plist_invalid() throws Throwable
+ {
H5.H5Dget_access_plist(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dget_create_plist_invalid() throws Throwable {
+ public void testH5Dget_create_plist_invalid() throws Throwable
+ {
H5.H5Dget_create_plist(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dget_offset_invalid() throws Throwable {
+ public void testH5Dget_offset_invalid() throws Throwable
+ {
H5.H5Dget_offset(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dget_space_invalid() throws Throwable {
+ public void testH5Dget_space_invalid() throws Throwable
+ {
H5.H5Dget_space(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dget_type_invalid() throws Throwable {
+ public void testH5Dget_type_invalid() throws Throwable
+ {
H5.H5Dget_type(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dget_space_status_invalid() throws Throwable {
+ public void testH5Dget_space_status_invalid() throws Throwable
+ {
int status = H5.H5Dget_space_status(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dset_extent_status_invalid() throws Throwable {
+ public void testH5Dset_extent_status_invalid() throws Throwable
+ {
long[] size = new long[2];
H5.H5Dset_extent(-1, size);
}
@Test(expected = NullPointerException.class)
- public void testH5Dset_extent_status_null() throws Throwable {
+ public void testH5Dset_extent_status_null() throws Throwable
+ {
H5.H5Dset_extent(-1, null);
}
@Test(expected = NullPointerException.class)
- public void testH5Dopen_null() throws Throwable {
+ public void testH5Dopen_null() throws Throwable
+ {
H5.H5Dopen(-1, null, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dopen_invalid() throws Throwable {
+ public void testH5Dopen_invalid() throws Throwable
+ {
H5.H5Dopen(-1, "Bogus", 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dvlen_get_buf_size_invalid() throws Throwable {
+ public void testH5Dvlen_get_buf_size_invalid() throws Throwable
+ {
H5.H5Dvlen_get_buf_size(-1, -1, -1);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Dget_storage_size_invalid() throws Throwable {
+ public void testH5Dget_storage_size_invalid() throws Throwable
+ {
H5.H5Dget_storage_size(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Dflush_invalid() throws Throwable {
+ public void testH5Dflush_invalid() throws Throwable
+ {
H5.H5Dflush(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Drefresh_invalid() throws Throwable {
+ public void testH5Drefresh_invalid() throws Throwable
+ {
H5.H5Drefresh(-1);
}
-
}
diff --git a/java/test/TestH5Dplist.java b/java/test/TestH5Dplist.java
index 774b9dd..b9e97f4 100644
--- a/java/test/TestH5Dplist.java
+++ b/java/test/TestH5Dplist.java
@@ -30,35 +30,42 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Dplist {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_FILE = "testDp.h5";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 7;
- private static final int EDIM_X = 6;
- private static final int EDIM_Y = 10;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 4;
- private static final int NDIMS = 2;
- private static final int FILLVAL = 99;
- private static final int RANK = 2;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
- long H5dcpl_id = HDF5Constants.H5I_INVALID_HID;
- long[] H5dims = { DIM_X, DIM_Y };
- long[] H5extdims = { EDIM_X, EDIM_Y };
- long[] H5chunk_dims = { CHUNK_X, CHUNK_Y };
- long[] H5maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
-
- private final void _deleteFile(String filename) {
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 7;
+ private static final int EDIM_X = 6;
+ private static final int EDIM_Y = 10;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 4;
+ private static final int NDIMS = 2;
+ private static final int FILLVAL = 99;
+ private static final int RANK = 2;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+ long H5dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long[] H5dims = {DIM_X, DIM_Y};
+ long[] H5extdims = {EDIM_X, EDIM_Y};
+ long[] H5chunk_dims = {CHUNK_X, CHUNK_Y};
+ long[] H5maxdims = {HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED};
+
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
- private final void _createPDataset(long fid, long dsid, String name, long dcpl_val) {
+ private final void _createPDataset(long fid, long dsid, String name, long dcpl_val)
+ {
try {
H5dcpl_id = H5.H5Pcreate(dcpl_val);
}
@@ -78,7 +85,7 @@ public class TestH5Dplist {
// Set the fill value for the dataset
try {
- int[] fill_value = { FILLVAL };
+ int[] fill_value = {FILLVAL};
H5.H5Pset_fill_value(H5dcpl_id, HDF5Constants.H5T_NATIVE_INT, fill_value);
}
catch (Exception e) {
@@ -98,136 +105,151 @@ public class TestH5Dplist {
_createDataset(H5fid, H5dsid, "dset", H5dcpl_id, HDF5Constants.H5P_DEFAULT);
}
- private final void _createDataset(long fid, long dsid, String name, long dcpl, long dapl) {
+ private final void _createDataset(long fid, long dsid, String name, long dcpl, long dapl)
+ {
try {
- H5did = H5.H5Dcreate(fid, name,
- HDF5Constants.H5T_STD_I32BE, dsid,
- HDF5Constants.H5P_DEFAULT, dcpl, dapl);
+ H5did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+ dcpl, dapl);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Dcreate: " + err);
}
- assertTrue("TestH5Dplist._createDataset: ",H5did > 0);
+ assertTrue("TestH5Dplist._createDataset: ", H5did > 0);
}
@Before
- public void createH5file() throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5dsid = H5.H5Screate_simple(RANK, H5dims, H5maxdims);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Dplist.createH5file: " + err);
}
- assertTrue("TestH5Dplist.createH5file: H5.H5Fcreate: ",H5fid > 0);
- assertTrue("TestH5Dplist.createH5file: H5.H5Screate_simple: ",H5dsid > 0);
+ assertTrue("TestH5Dplist.createH5file: H5.H5Fcreate: ", H5fid > 0);
+ assertTrue("TestH5Dplist.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5dcpl_id >= 0)
- try {H5.H5Pclose(H5dcpl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(H5dcpl_id);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
_deleteFile(H5_FILE);
System.out.println();
}
- @Test
- public void testH5Dset_extent() {
- int[][] write_dset_data = new int[DIM_X][DIM_Y];
- int[][] read_dset_data = new int[DIM_X][DIM_Y];
- int[][] extend_dset_data = new int[EDIM_X][EDIM_Y];
-
- // Initialize the dataset.
- for (int indx = 0; indx < DIM_X; indx++)
- for (int jndx = 0; jndx < DIM_Y; jndx++)
- write_dset_data[indx][jndx] = indx * jndx - jndx;
-
- _createPDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DATASET_CREATE);
-
- // Read values from the dataset, which has not been written to yet.
- try {
- H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, read_dset_data);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- assertTrue("testH5Dset_extent - H5.H5Dread: ", read_dset_data[0][0] == 99);
-
- // Write the data to the dataset.
- try {
- H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, write_dset_data);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Read the data back.
- try {
- H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, read_dset_data);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- assertTrue("testH5Dset_extent - H5.H5Dread: ", read_dset_data[3][6] == 12);
-
- // Extend the dataset.
- try {
- H5.H5Dset_extent(H5did, H5extdims);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Read from the extended dataset.
- try {
- H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, extend_dset_data);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- assertTrue("testH5Dset_extent - H5.H5Dread: ", extend_dset_data[3][6] == 12);
- assertTrue("testH5Dset_extent - H5.H5Dread: ", extend_dset_data[4][8] == 99);
- }
-
- @Test
- public void testH5P_dset_no_attrs_hint() {
- boolean ret_val_id = true;
-
- _createPDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DATASET_CREATE);
-
- try {
- ret_val_id = H5.H5Pget_dset_no_attrs_hint(H5dcpl_id);
- assertFalse("H5P_dset_no_attrs_hint", ret_val_id);
- H5.H5Pset_dset_no_attrs_hint(H5dcpl_id, true);
- ret_val_id = H5.H5Pget_dset_no_attrs_hint(H5dcpl_id);
- assertTrue("H5P_dset_no_attrs_hint", ret_val_id);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("H5P_dset_no_attrs_hint: " + err);
- }
- }
+ @Test
+ public void testH5Dset_extent()
+ {
+ int[][] write_dset_data = new int[DIM_X][DIM_Y];
+ int[][] read_dset_data = new int[DIM_X][DIM_Y];
+ int[][] extend_dset_data = new int[EDIM_X][EDIM_Y];
+ // Initialize the dataset.
+ for (int indx = 0; indx < DIM_X; indx++)
+ for (int jndx = 0; jndx < DIM_Y; jndx++)
+ write_dset_data[indx][jndx] = indx * jndx - jndx;
+
+ _createPDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DATASET_CREATE);
+
+ // Read values from the dataset, which has not been written to yet.
+ try {
+ H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, read_dset_data);
+ }
+ catch (Exception e) {
+ e.printStackTrace();
+ }
+ assertTrue("testH5Dset_extent - H5.H5Dread: ", read_dset_data[0][0] == 99);
+
+ // Write the data to the dataset.
+ try {
+ H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, write_dset_data);
+ }
+ catch (Exception e) {
+ e.printStackTrace();
+ }
+
+ // Read the data back.
+ try {
+ H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, read_dset_data);
+ }
+ catch (Exception e) {
+ e.printStackTrace();
+ }
+ assertTrue("testH5Dset_extent - H5.H5Dread: ", read_dset_data[3][6] == 12);
+
+ // Extend the dataset.
+ try {
+ H5.H5Dset_extent(H5did, H5extdims);
+ }
+ catch (Exception e) {
+ e.printStackTrace();
+ }
+
+ // Read from the extended dataset.
+ try {
+ H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, extend_dset_data);
+ }
+ catch (Exception e) {
+ e.printStackTrace();
+ }
+ assertTrue("testH5Dset_extent - H5.H5Dread: ", extend_dset_data[3][6] == 12);
+ assertTrue("testH5Dset_extent - H5.H5Dread: ", extend_dset_data[4][8] == 99);
+ }
+
+ @Test
+ public void testH5P_dset_no_attrs_hint()
+ {
+ boolean ret_val_id = true;
+
+ _createPDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DATASET_CREATE);
+
+ try {
+ ret_val_id = H5.H5Pget_dset_no_attrs_hint(H5dcpl_id);
+ assertFalse("H5P_dset_no_attrs_hint", ret_val_id);
+ H5.H5Pset_dset_no_attrs_hint(H5dcpl_id, true);
+ ret_val_id = H5.H5Pget_dset_no_attrs_hint(H5dcpl_id);
+ assertTrue("H5P_dset_no_attrs_hint", ret_val_id);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("H5P_dset_no_attrs_hint: " + err);
+ }
+ }
}
diff --git a/java/test/TestH5Drw.java b/java/test/TestH5Drw.java
index 69fb9d7..b18bed7 100644
--- a/java/test/TestH5Drw.java
+++ b/java/test/TestH5Drw.java
@@ -33,77 +33,97 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Drw {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_INTS_FILE = "tintsattrs.h5";
private static final String H5_FLTS_FILE = "tfloatsattrs.h5";
- private static final int DIM_X = 8;
- private static final int DIM8_Y = 8;
- private static final int DIM16_Y = 16;
- private static final int DIM32_Y = 32;
- private static final int DIM64_Y = 64;
- private static final int DIM128_Y = 128;
- private static final String DATASETU08 = "DU08BITS";
- private static final String DATASETS08 = "DS08BITS";
- private static final String DATASETU16 = "DU16BITS";
- private static final String DATASETS16 = "DS16BITS";
- private static final String DATASETU32 = "DU32BITS";
- private static final String DATASETS32 = "DS32BITS";
- private static final String DATASETU64 = "DU64BITS";
- private static final String DATASETS64 = "DS64BITS";
- private static final String DATASETF32 = "DS32BITS";
- private static final String DATASETF64 = "DS64BITS";
- private static final String DATASETF128 = "DS128BITS";
- private static final int RANK = 2;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
-
- private final void _closeH5file() throws HDF5LibraryException {
+ private static final int DIM_X = 8;
+ private static final int DIM8_Y = 8;
+ private static final int DIM16_Y = 16;
+ private static final int DIM32_Y = 32;
+ private static final int DIM64_Y = 64;
+ private static final int DIM128_Y = 128;
+ private static final String DATASETU08 = "DU08BITS";
+ private static final String DATASETS08 = "DS08BITS";
+ private static final String DATASETU16 = "DU16BITS";
+ private static final String DATASETS16 = "DS16BITS";
+ private static final String DATASETU32 = "DU32BITS";
+ private static final String DATASETS32 = "DS32BITS";
+ private static final String DATASETU64 = "DU64BITS";
+ private static final String DATASETS64 = "DS64BITS";
+ private static final String DATASETF32 = "DS32BITS";
+ private static final String DATASETF64 = "DS64BITS";
+ private static final String DATASETF128 = "DS128BITS";
+ private static final int RANK = 2;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+
+ private final void _closeH5file() throws HDF5LibraryException
+ {
if (H5did >= 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
- public void openH5file(String filename, String dsetname) {
- try {
- H5fid = H5.H5Fopen(filename,
- HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5Drw._openH5file: " + err);
- }
- assertTrue("TestH5Drw._openH5file: H5.H5Fopen: ", H5fid >= 0);
- try {
- H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5Drw._openH5file: " + err);
- }
- assertTrue("TestH5Drw._openH5file: H5.H5Dopen: ", H5did >= 0);
+ public void openH5file(String filename, String dsetname)
+ {
+ try {
+ H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5Drw._openH5file: " + err);
+ }
+ assertTrue("TestH5Drw._openH5file: H5.H5Fopen: ", H5fid >= 0);
+ try {
+ H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5Drw._openH5file: " + err);
+ }
+ assertTrue("TestH5Drw._openH5file: H5.H5Dopen: ", H5did >= 0);
}
@After
- public void closeH5file() throws HDF5LibraryException {
+ public void closeH5file() throws HDF5LibraryException
+ {
if (H5did >= 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
H5fid = HDF5Constants.H5I_INVALID_HID;
H5did = HDF5Constants.H5I_INVALID_HID;
System.out.println();
}
@Before
- public void verifyCount()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
+ public void verifyCount() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@Test
- public void testH5Dread_8bit_ints() {
+ public void testH5Dread_8bit_ints()
+ {
byte[][] dset_data = new byte[DIM_X][DIM8_Y];
try {
@@ -117,7 +137,7 @@ public class TestH5Drw {
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_UINT8, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
@@ -144,7 +164,7 @@ public class TestH5Drw {
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT8, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
@@ -153,7 +173,8 @@ public class TestH5Drw {
}
@Test
- public void testH5Dread_16bit_ints() {
+ public void testH5Dread_16bit_ints()
+ {
short[][] dset_data = new short[DIM_X][DIM16_Y];
try {
@@ -167,7 +188,7 @@ public class TestH5Drw {
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_UINT16, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
@@ -194,7 +215,7 @@ public class TestH5Drw {
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT16, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
@@ -203,7 +224,8 @@ public class TestH5Drw {
}
@Test
- public void testH5Dread_32bit_ints() {
+ public void testH5Dread_32bit_ints()
+ {
int[][] dset_data = new int[DIM_X][DIM16_Y];
try {
@@ -217,7 +239,7 @@ public class TestH5Drw {
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_UINT32, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
@@ -244,7 +266,7 @@ public class TestH5Drw {
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT32, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
@@ -253,7 +275,8 @@ public class TestH5Drw {
}
@Test
- public void testH5Dread_64bit_ints() {
+ public void testH5Dread_64bit_ints()
+ {
long[][] dset_data = new long[DIM_X][DIM64_Y];
try {
@@ -267,7 +290,7 @@ public class TestH5Drw {
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_UINT64, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
@@ -294,7 +317,7 @@ public class TestH5Drw {
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_INT64, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
@@ -303,7 +326,8 @@ public class TestH5Drw {
}
@Test
- public void testH5Dread_32bit_floats() {
+ public void testH5Dread_32bit_floats()
+ {
float[][] dset_data = new float[DIM_X][DIM32_Y];
try {
@@ -317,7 +341,7 @@ public class TestH5Drw {
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_FLOAT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
@@ -328,7 +352,8 @@ public class TestH5Drw {
}
@Test
- public void testH5Dread_64bit_floats() {
+ public void testH5Dread_64bit_floats()
+ {
double[][] dset_data = new double[DIM_X][DIM64_Y];
try {
@@ -342,7 +367,7 @@ public class TestH5Drw {
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
@@ -353,7 +378,8 @@ public class TestH5Drw {
}
@Test
- public void testH5Dread_128bit_floats() {
+ public void testH5Dread_128bit_floats()
+ {
byte[][][] dset_data = new byte[DIM_X][DIM128_Y][8];
try {
@@ -367,12 +393,11 @@ public class TestH5Drw {
// Read data.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_LDOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Dread_128bit_floats: H5Dread: " + err);
}
}
-
}
diff --git a/java/test/TestH5E.java b/java/test/TestH5E.java
index cad0a06..bdd6802 100644
--- a/java/test/TestH5E.java
+++ b/java/test/TestH5E.java
@@ -22,9 +22,9 @@ import java.util.ArrayList;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.callbacks.H5E_walk_cb;
import hdf.hdf5lib.callbacks.H5E_walk_t;
+import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.structs.H5E_error2_t;
import org.junit.After;
@@ -35,20 +35,22 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5E {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
long hdf_java_classid = -1;
- long current_stackid = -1;
+ long current_stackid = -1;
@Before
- public void H5Eget_stack_class() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void H5Eget_stack_class()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
hdf_java_classid = -1;
try {
hdf_java_classid = H5.H5Eregister_class("HDF-Java-Error", "hdf-java", "2.5");
- current_stackid = H5.H5Eget_current_stack();
+ current_stackid = H5.H5Eget_current_stack();
}
catch (Throwable err) {
err.printStackTrace();
@@ -57,7 +59,8 @@ public class TestH5E {
}
@After
- public void H5Erestore_stack_class() {
+ public void H5Erestore_stack_class()
+ {
try {
H5.H5Eunregister_class(hdf_java_classid);
hdf_java_classid = -1;
@@ -72,14 +75,15 @@ public class TestH5E {
}
@Test
- public void testH5Eget_msg_major() {
+ public void testH5Eget_msg_major()
+ {
try {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (HDF5LibraryException hdferr) {
- long errnum = hdferr.getMajorErrorNumber();
- int[] error_msg_type = { HDF5Constants.H5E_MAJOR };
- String msg = null;
+ long errnum = hdferr.getMajorErrorNumber();
+ int[] error_msg_type = {HDF5Constants.H5E_MAJOR};
+ String msg = null;
try {
msg = H5.H5Eget_msg(errnum, error_msg_type);
@@ -92,11 +96,11 @@ public class TestH5E {
assertEquals("H5.H5Eget_msg: ", HDF5Constants.H5E_MAJOR, error_msg_type[0]);
/*
- * If HDF5_VOL_CONNECTOR is set, this might not be the
- * native connector and the error string might be different.
- * Only check for the specific error message if the native
- * connector is being used.
- */
+ * If HDF5_VOL_CONNECTOR is set, this might not be the
+ * native connector and the error string might be different.
+ * Only check for the specific error message if the native
+ * connector is being used.
+ */
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null)
assertTrue("H5.H5Eget_msg: ", msg.contains("File accessibility"));
@@ -108,14 +112,15 @@ public class TestH5E {
}
@Test
- public void testH5Eget_msg_minor() {
+ public void testH5Eget_msg_minor()
+ {
try {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (HDF5LibraryException hdferr) {
- long errnum = hdferr.getMinorErrorNumber();
- int[] error_msg_type = { HDF5Constants.H5E_MINOR };
- String msg = null;
+ long errnum = hdferr.getMinorErrorNumber();
+ int[] error_msg_type = {HDF5Constants.H5E_MINOR};
+ String msg = null;
try {
msg = H5.H5Eget_msg(errnum, error_msg_type);
@@ -128,11 +133,11 @@ public class TestH5E {
assertEquals("H5.H5Eget_msg: ", HDF5Constants.H5E_MINOR, error_msg_type[0]);
/*
- * If HDF5_VOL_CONNECTOR is set, this might not be the
- * native connector and the error string might be different.
- * Only check for the specific error message if the native
- * connector is being used.
- */
+ * If HDF5_VOL_CONNECTOR is set, this might not be the
+ * native connector and the error string might be different.
+ * Only check for the specific error message if the native
+ * connector is being used.
+ */
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null)
assertTrue("H5.H5Eget_msg: ", msg.contains("Unable to open file"));
@@ -144,9 +149,10 @@ public class TestH5E {
}
@Test
- public void testH5Epop() {
+ public void testH5Epop()
+ {
- long num_msg = -1;
+ long num_msg = -1;
long saved_num_msg = -1;
try {
@@ -213,13 +219,14 @@ public class TestH5E {
}
@Test
- public void testH5Epush() {
- String err_func = "testH5Epush";
- String err_msg = "Error message";
- long estack_id = -1;
- long maj_err_id = -1;
- long min_err_id = -1;
- long num_msg = -1;
+ public void testH5Epush()
+ {
+ String err_func = "testH5Epush";
+ String err_msg = "Error message";
+ long estack_id = -1;
+ long maj_err_id = -1;
+ long min_err_id = -1;
+ long num_msg = -1;
try {
try {
@@ -231,7 +238,8 @@ public class TestH5E {
fail("testH5Epush: H5.H5Ecreate_msg_major: " + err);
}
try {
- min_err_id = H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MINOR, "Error in Test Function");
+ min_err_id =
+ H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MINOR, "Error in Test Function");
assertFalse("H5.H5Ecreate_msg_minor: " + min_err_id, min_err_id < 0);
}
catch (Throwable err) {
@@ -257,7 +265,8 @@ public class TestH5E {
fail("testH5Epush: H5.H5Eget_num: " + err);
}
- H5.H5Epush(estack_id, "TestH5E.java", err_func, 354, hdf_java_classid, maj_err_id, min_err_id, err_msg);
+ H5.H5Epush(estack_id, "TestH5E.java", err_func, 354, hdf_java_classid, maj_err_id, min_err_id,
+ err_msg);
try {
num_msg = H5.H5Eget_num(estack_id);
@@ -274,24 +283,38 @@ public class TestH5E {
}
finally {
if (estack_id >= 0)
- try {H5.H5Eclose_stack(estack_id);} catch (Exception ex) {}
+ try {
+ H5.H5Eclose_stack(estack_id);
+ }
+ catch (Exception ex) {
+ }
if (maj_err_id >= 0)
- try {H5.H5Eclose_msg(maj_err_id);} catch (Exception ex) {}
+ try {
+ H5.H5Eclose_msg(maj_err_id);
+ }
+ catch (Exception ex) {
+ }
if (min_err_id >= 0)
- try {H5.H5Eclose_msg(min_err_id);} catch (Exception ex) {}
+ try {
+ H5.H5Eclose_msg(min_err_id);
+ }
+ catch (Exception ex) {
+ }
}
} /* end test_create() */
@Test
- public void testH5Ewalk() {
+ public void testH5Ewalk()
+ {
class wdata {
- public String err_desc = null;
+ public String err_desc = null;
public String func_name = null;
- public int line = -1;
- wdata(String desc, String func, int lineno) {
- this.err_desc = new String(desc);
+ public int line = -1;
+ wdata(String desc, String func, int lineno)
+ {
+ this.err_desc = new String(desc);
this.func_name = new String(func);
- this.line = lineno;
+ this.line = lineno;
}
}
class H5E_walk_data implements H5E_walk_t {
@@ -299,14 +322,15 @@ public class TestH5E {
}
H5E_walk_t walk_data = new H5E_walk_data();
class H5E_walk_callback implements H5E_walk_cb {
- public int callback(int nidx, H5E_error2_t info, H5E_walk_t op_data) {
+ public int callback(int nidx, H5E_error2_t info, H5E_walk_t op_data)
+ {
wdata wd = new wdata(info.desc, info.func_name, info.line);
((H5E_walk_data)op_data).walkdata.add(wd);
return 0;
}
}
H5E_walk_cb walk_cb = new H5E_walk_callback();
- long num_msg = -1;
+ long num_msg = -1;
try {
H5.H5Eset_current_stack(current_stackid);
@@ -346,9 +370,8 @@ public class TestH5E {
err.printStackTrace();
fail("testH5Ewalk:H5Ewalk2 " + err);
}
- assertFalse("testH5Ewalk:H5Ewalk2 ",((H5E_walk_data)walk_data).walkdata.isEmpty());
- assertTrue("testH5Ewalk:H5Ewalk2 "+((H5E_walk_data)walk_data).walkdata.size(),((H5E_walk_data)walk_data).walkdata.size() > 0);
+ assertFalse("testH5Ewalk:H5Ewalk2 ", ((H5E_walk_data)walk_data).walkdata.isEmpty());
+ assertTrue("testH5Ewalk:H5Ewalk2 " + ((H5E_walk_data)walk_data).walkdata.size(),
+ ((H5E_walk_data)walk_data).walkdata.size() > 0);
}
-
}
-
diff --git a/java/test/TestH5Edefault.java b/java/test/TestH5Edefault.java
index 9e93cea..c412cf2 100644
--- a/java/test/TestH5Edefault.java
+++ b/java/test/TestH5Edefault.java
@@ -15,25 +15,28 @@ package test;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
import org.junit.Before;
+import org.junit.Ignore;
import org.junit.Rule;
import org.junit.Test;
-import org.junit.Ignore;
import org.junit.rules.TestName;
public class TestH5Edefault {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
public static final int ERRSTACK_CNT = 6;
@Before
- public void H5Eset_default_stack() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void H5Eset_default_stack()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
@@ -46,23 +49,26 @@ public class TestH5Edefault {
}
}
@After
- public void nextTestName() {
+ public void nextTestName()
+ {
System.out.println();
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Eprint2_invalid_classid() throws Throwable {
+ public void testH5Eprint2_invalid_classid() throws Throwable
+ {
H5.H5Eprint2(-1, null);
}
@Ignore
- public void testH5Eprint() {
+ public void testH5Eprint()
+ {
/*
- * If HDF5_VOL_CONNECTOR is set, this might not be the
- * native connector and the error stack might be different.
- * Only check for the specific error stack if the native
- * connector is being used.
- */
+ * If HDF5_VOL_CONNECTOR is set, this might not be the
+ * native connector and the error stack might be different.
+ * Only check for the specific error stack if the native
+ * connector is being used.
+ */
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null) {
try {
@@ -81,19 +87,20 @@ public class TestH5Edefault {
}
@Test
- public void testH5Eget_current_stack() {
- long num_msg = -1;
- long num_msg_default = -1;
- long saved_num_msg = -1;
- long stack_id = -1;
+ public void testH5Eget_current_stack()
+ {
+ long num_msg = -1;
+ long num_msg_default = -1;
+ long saved_num_msg = -1;
+ long stack_id = -1;
long stack_id_default = HDF5Constants.H5E_DEFAULT;
try {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
- //default stack id will be different after exception
+ // default stack id will be different after exception
stack_id_default = HDF5Constants.H5E_DEFAULT;
- //err.printStackTrace(); //This will clear the error stack
+ // err.printStackTrace(); //This will clear the error stack
}
// Verify we have messages on the error stack
try {
@@ -147,16 +154,17 @@ public class TestH5Edefault {
}
@Test
- public void testH5Eget_current_stack_pop() {
- long num_msg = -1;
+ public void testH5Eget_current_stack_pop()
+ {
+ long num_msg = -1;
long num_msg_default = -1;
- long saved_num_msg = -1;
- long stack_id = -1;
+ long saved_num_msg = -1;
+ long stack_id = -1;
try {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
- //err.printStackTrace(); //This will clear the error stack
+ // err.printStackTrace(); //This will clear the error stack
}
// Verify there are error messages on the stack and save it
@@ -179,7 +187,8 @@ public class TestH5Edefault {
fail("H5.H5Eget_current_stack: " + err);
}
assertFalse("H5.H5Eget_current_stack: get_current_stack - " + stack_id, stack_id < 0);
- assertFalse("H5.H5Eget_current_stack: get_current_stack - " + stack_id, stack_id == HDF5Constants.H5E_DEFAULT);
+ assertFalse("H5.H5Eget_current_stack: get_current_stack - " + stack_id,
+ stack_id == HDF5Constants.H5E_DEFAULT);
// Verify the stack is empty
try {
@@ -206,7 +215,7 @@ public class TestH5Edefault {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
- //err.printStackTrace(); //This will clear the error stack
+ // err.printStackTrace(); //This will clear the error stack
}
// Verify we have a nonzero number of messages and save it
@@ -243,37 +252,44 @@ public class TestH5Edefault {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Eclose_stack_invalid_stackid() throws Throwable {
+ public void testH5Eclose_stack_invalid_stackid() throws Throwable
+ {
H5.H5Eclose_stack(-1);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Eget_class_name_invalid_classid() throws Throwable {
+ public void testH5Eget_class_name_invalid_classid() throws Throwable
+ {
H5.H5Eget_class_name(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Eget_class_name_invalid_classname() throws Throwable {
+ public void testH5Eget_class_name_invalid_classname() throws Throwable
+ {
H5.H5Eget_class_name(HDF5Constants.H5E_DEFAULT);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Eclose_msg_invalid_errid() throws Throwable {
+ public void testH5Eclose_msg_invalid_errid() throws Throwable
+ {
H5.H5Eclose_msg(-1);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Ecreate_msg_invalid_errid() throws Throwable {
+ public void testH5Ecreate_msg_invalid_errid() throws Throwable
+ {
H5.H5Ecreate_msg(-1, HDF5Constants.H5E_MAJOR, "null");
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Eget_msg_invalid_msgid() throws Throwable {
+ public void testH5Eget_msg_invalid_msgid() throws Throwable
+ {
H5.H5Eget_msg(-1, null);
}
@Test
- public void testH5Ecreate_stack() {
+ public void testH5Ecreate_stack()
+ {
try {
long stack_id = H5.H5Ecreate_stack();
assertTrue("H5.H5Ecreate_stack", stack_id > 0);
@@ -286,14 +302,16 @@ public class TestH5Edefault {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Eset_current_stack_invalid_stkid() throws Throwable {
+ public void testH5Eset_current_stack_invalid_stkid() throws Throwable
+ {
H5.H5Eset_current_stack(-1);
}
@Test
- public void testH5Eset_current_stack() {
- long num_msg = -1;
- long stack_id = -1;
+ public void testH5Eset_current_stack()
+ {
+ long num_msg = -1;
+ long stack_id = -1;
long saved_num_msg = -1;
// Generate errors on the default stack
@@ -301,7 +319,7 @@ public class TestH5Edefault {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
- //err.printStackTrace(); //This will clear the error stack
+ // err.printStackTrace(); //This will clear the error stack
}
// Verify we have a nonzero number of messages and save it
@@ -324,7 +342,8 @@ public class TestH5Edefault {
fail("H5.H5Eset_current_stack: " + err);
}
assertFalse("H5.H5Eset_current_stack: get_current_stack - " + stack_id, stack_id < 0);
- assertFalse("H5.H5Eset_current_stack: get_current_stack - " + stack_id, stack_id == HDF5Constants.H5E_DEFAULT);
+ assertFalse("H5.H5Eset_current_stack: get_current_stack - " + stack_id,
+ stack_id == HDF5Constants.H5E_DEFAULT);
// Verify the copy has the same number of messages as the original stack
try {
@@ -341,7 +360,7 @@ public class TestH5Edefault {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
- //err.printStackTrace(); //This will clear the error stack
+ // err.printStackTrace(); //This will clear the error stack
}
// Verify we have the same number of messages as before
@@ -388,13 +407,15 @@ public class TestH5Edefault {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Epop_invalid_stkid() throws Throwable {
+ public void testH5Epop_invalid_stkid() throws Throwable
+ {
H5.H5Epop(-1, 0);
}
@Test
- public void testH5Epop() throws Throwable {
- long num_msg = -1;
+ public void testH5Epop() throws Throwable
+ {
+ long num_msg = -1;
long saved_num_msg = -1;
try {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
@@ -422,28 +443,33 @@ public class TestH5Edefault {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Epush_invalid_stkid() throws Throwable {
+ public void testH5Epush_invalid_stkid() throws Throwable
+ {
H5.H5Epush(-1, "Invalid", "Invalid", 0, -1, -1, -1, "Invalid message");
}
@Test(expected = NullPointerException.class)
- public void testH5Epush_null_name() throws Throwable {
- H5.H5Epush(HDF5Constants.H5E_DEFAULT, null, "Invalid", 0, HDF5Constants.H5E_DEFAULT, HDF5Constants.H5E_DEFAULT, HDF5Constants.H5E_DEFAULT, "Invalid message");
+ public void testH5Epush_null_name() throws Throwable
+ {
+ H5.H5Epush(HDF5Constants.H5E_DEFAULT, null, "Invalid", 0, HDF5Constants.H5E_DEFAULT,
+ HDF5Constants.H5E_DEFAULT, HDF5Constants.H5E_DEFAULT, "Invalid message");
}
@Test(expected = IllegalArgumentException.class)
- public void testH5EprintInt_invalid_classid() throws Throwable {
+ public void testH5EprintInt_invalid_classid() throws Throwable
+ {
H5.H5Eprint2(-1, null);
}
@Ignore
- public void testH5EprintInt() {
+ public void testH5EprintInt()
+ {
/*
- * If HDF5_VOL_CONNECTOR is set, this might not be the
- * native connector and the error stack might be different.
- * Only check for the specific error stack if the native
- * connector is being used.
- */
+ * If HDF5_VOL_CONNECTOR is set, this might not be the
+ * native connector and the error stack might be different.
+ * Only check for the specific error stack if the native
+ * connector is being used.
+ */
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null) {
try {
@@ -462,7 +488,8 @@ public class TestH5Edefault {
}
@Test
- public void testH5EclearInt() {
+ public void testH5EclearInt()
+ {
try {
H5.H5Eclear(HDF5Constants.H5E_DEFAULT);
}
@@ -473,12 +500,14 @@ public class TestH5Edefault {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Eclear2_invalid_stkid() throws Throwable {
+ public void testH5Eclear2_invalid_stkid() throws Throwable
+ {
H5.H5Eclear2(-1);
}
@Test
- public void testH5Eclear() {
+ public void testH5Eclear()
+ {
try {
H5.H5Eclear2(HDF5Constants.H5E_DEFAULT);
}
@@ -489,7 +518,8 @@ public class TestH5Edefault {
}
@Test
- public void testH5Eclear2_with_msg() {
+ public void testH5Eclear2_with_msg()
+ {
long num_msg = -1;
try {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
@@ -516,12 +546,14 @@ public class TestH5Edefault {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Eauto_is_v2_invalid_stkid() throws Throwable {
+ public void testH5Eauto_is_v2_invalid_stkid() throws Throwable
+ {
H5.H5Eauto_is_v2(-1);
}
@Test
- public void testH5Eauto_is_v2() {
+ public void testH5Eauto_is_v2()
+ {
boolean is_v2 = false;
try {
is_v2 = H5.H5Eauto_is_v2(HDF5Constants.H5E_DEFAULT);
@@ -534,12 +566,14 @@ public class TestH5Edefault {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Eget_num_invalid_stkid() throws Throwable {
+ public void testH5Eget_num_invalid_stkid() throws Throwable
+ {
H5.H5Eget_num(-1);
}
@Test
- public void testH5Eget_num() {
+ public void testH5Eget_num()
+ {
long num_msg = -1;
try {
num_msg = H5.H5Eget_num(HDF5Constants.H5E_DEFAULT);
@@ -552,7 +586,8 @@ public class TestH5Edefault {
}
@Test
- public void testH5Eget_num_with_msg() {
+ public void testH5Eget_num_with_msg()
+ {
long num_msg = -1;
try {
H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
@@ -568,6 +603,4 @@ public class TestH5Edefault {
}
assertTrue("H5.H5Eget_num_with_msg #:" + num_msg, num_msg > 0);
}
-
}
-
diff --git a/java/test/TestH5Eparams.java b/java/test/TestH5Eparams.java
index e55f1fc..4300ae6 100644
--- a/java/test/TestH5Eparams.java
+++ b/java/test/TestH5Eparams.java
@@ -22,9 +22,9 @@ import java.util.ArrayList;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.callbacks.H5E_walk_cb;
import hdf.hdf5lib.callbacks.H5E_walk_t;
+import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.structs.H5E_error2_t;
import org.junit.After;
@@ -35,19 +35,21 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Eparams {
- @Rule public TestName testname = new TestName();
- long hdf_java_classid = -1;
- long current_stackid = -1;
+ @Rule
+ public TestName testname = new TestName();
+ long hdf_java_classid = -1;
+ long current_stackid = -1;
@Before
- public void H5Eget_stack_class() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void H5Eget_stack_class()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
hdf_java_classid = -1;
try {
hdf_java_classid = H5.H5Eregister_class("HDF-Java-Error", "hdf-java", "2.5");
- current_stackid = H5.H5Eget_current_stack();
+ current_stackid = H5.H5Eget_current_stack();
}
catch (Throwable err) {
err.printStackTrace();
@@ -56,7 +58,8 @@ public class TestH5Eparams {
}
@After
- public void H5Erestore_stack_class() {
+ public void H5Erestore_stack_class()
+ {
try {
H5.H5Eunregister_class(hdf_java_classid);
hdf_java_classid = -1;
@@ -71,7 +74,8 @@ public class TestH5Eparams {
}
@Test
- public void testH5Eget_class_name() {
+ public void testH5Eget_class_name()
+ {
try {
String class_name = H5.H5Eget_class_name(hdf_java_classid);
assertNotNull("H5.H5Eget_class_name: " + class_name, class_name);
@@ -84,7 +88,8 @@ public class TestH5Eparams {
}
@Test
- public void testH5Eprint2() {
+ public void testH5Eprint2()
+ {
try {
assertFalse(current_stackid < 0);
H5.H5Eprint2(current_stackid, null);
@@ -96,17 +101,20 @@ public class TestH5Eparams {
}
@Ignore("Tested with create_msg_major[minor]")
- public void testH5Eclose_msg() {
+ public void testH5Eclose_msg()
+ {
fail("Not yet implemented");
}
@Test(expected = NullPointerException.class)
- public void testH5Ecreate_msg_name_null() throws Throwable {
+ public void testH5Ecreate_msg_name_null() throws Throwable
+ {
H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MAJOR, null);
}
@Test
- public void testH5Ecreate_msg_major() {
+ public void testH5Ecreate_msg_major()
+ {
try {
long err_id = H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MAJOR, "Error in Test");
assertFalse("H5.H5Ecreate_msg_major: " + err_id, err_id < 0);
@@ -119,9 +127,11 @@ public class TestH5Eparams {
}
@Test
- public void testH5Ecreate_msg_minor() {
+ public void testH5Ecreate_msg_minor()
+ {
try {
- long err_id = H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MINOR, "Error in Test Function");
+ long err_id =
+ H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MINOR, "Error in Test Function");
assertFalse("H5.H5Ecreate_msg_minor: " + err_id, err_id < 0);
H5.H5Eclose_msg(err_id);
}
@@ -132,10 +142,11 @@ public class TestH5Eparams {
}
@Test
- public void testH5Eget_msg() {
- int[] error_msg_type = { HDF5Constants.H5E_MINOR };
- long err_id = -1;
- String msg = null;
+ public void testH5Eget_msg()
+ {
+ int[] error_msg_type = {HDF5Constants.H5E_MINOR};
+ long err_id = -1;
+ String msg = null;
try {
err_id = H5.H5Ecreate_msg(hdf_java_classid, HDF5Constants.H5E_MAJOR, "Error in Test");
}
@@ -164,7 +175,8 @@ public class TestH5Eparams {
}
@Test
- public void testH5Ecreate_stack() {
+ public void testH5Ecreate_stack()
+ {
long stk_id = -1;
try {
stk_id = H5.H5Ecreate_stack();
@@ -184,7 +196,8 @@ public class TestH5Eparams {
}
@Test
- public void testH5EprintInt() {
+ public void testH5EprintInt()
+ {
assertFalse(current_stackid < 0);
try {
H5.H5Eprint2(current_stackid, null);
@@ -196,7 +209,8 @@ public class TestH5Eparams {
}
@Test
- public void testH5EclearInt() {
+ public void testH5EclearInt()
+ {
try {
H5.H5Eclear(current_stackid);
}
@@ -207,7 +221,8 @@ public class TestH5Eparams {
}
@Test
- public void testH5Eclear2() {
+ public void testH5Eclear2()
+ {
try {
H5.H5Eclear2(current_stackid);
}
@@ -218,7 +233,8 @@ public class TestH5Eparams {
}
@Test
- public void testH5Eauto_is_v2() {
+ public void testH5Eauto_is_v2()
+ {
boolean is_v2 = false;
try {
is_v2 = H5.H5Eauto_is_v2(current_stackid);
@@ -231,7 +247,8 @@ public class TestH5Eparams {
}
@Test
- public void testH5Eget_num() {
+ public void testH5Eget_num()
+ {
long num_msg = -1;
try {
num_msg = H5.H5Eget_num(current_stackid);
@@ -244,7 +261,8 @@ public class TestH5Eparams {
}
@Test
- public void testH5Eget_num_with_msg() {
+ public void testH5Eget_num_with_msg()
+ {
try {
H5.H5Eset_current_stack(current_stackid);
}
@@ -277,5 +295,4 @@ public class TestH5Eparams {
}
assertTrue("H5.H5Eget_num_with_msg #:" + num_msg, num_msg > 0);
}
-
}
diff --git a/java/test/TestH5Eregister.java b/java/test/TestH5Eregister.java
index 99e8e5f..b4c63e0 100644
--- a/java/test/TestH5Eregister.java
+++ b/java/test/TestH5Eregister.java
@@ -14,6 +14,7 @@ package test;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
+
import hdf.hdf5lib.H5;
import org.junit.After;
@@ -23,40 +24,48 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Eregister {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
@Before
- public void checkOpenIDs() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void checkOpenIDs()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@After
- public void nextTestName() {
+ public void nextTestName()
+ {
System.out.println();
}
@Test(expected = NullPointerException.class)
- public void testH5Eregister_class_cls_name_null() throws Throwable {
+ public void testH5Eregister_class_cls_name_null() throws Throwable
+ {
H5.H5Eregister_class(null, "libname", "version");
}
@Test(expected = NullPointerException.class)
- public void testH5Eregister_class_lib_name_null() throws Throwable {
+ public void testH5Eregister_class_lib_name_null() throws Throwable
+ {
H5.H5Eregister_class("clsname", null, "version");
}
@Test(expected = NullPointerException.class)
- public void testH5Eregister_class_version_null() throws Throwable {
+ public void testH5Eregister_class_version_null() throws Throwable
+ {
H5.H5Eregister_class("clsname", "libname", null);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Eunregister_class_invalid_classid() throws Throwable {
+ public void testH5Eunregister_class_invalid_classid() throws Throwable
+ {
H5.H5Eunregister_class(-1);
}
@Test
- public void testH5Eregister_class() {
+ public void testH5Eregister_class()
+ {
long hdf_java_classid = -1;
try {
hdf_java_classid = H5.H5Eregister_class("HDF-Java-Error", "hdf-java", "2.5");
diff --git a/java/test/TestH5F.java b/java/test/TestH5F.java
index 16786b9..fde2739 100644
--- a/java/test/TestH5F.java
+++ b/java/test/TestH5F.java
@@ -30,49 +30,58 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5F {
- @Rule public TestName testname = new TestName();
- private static final String H5_FILE = "testF.h5";
+ @Rule
+ public TestName testname = new TestName();
+ private static final String H5_FILE = "testF.h5";
private static final String H5_FILE2 = "testF2.h5";
- private static final int COUNT_OBJ_FILE = 1;
- private static final int COUNT_OBJ_DATASET = 0;
- private static final int COUNT_OBJ_GROUP = 0;
+ private static final int COUNT_OBJ_FILE = 1;
+ private static final int COUNT_OBJ_DATASET = 0;
+ private static final int COUNT_OBJ_GROUP = 0;
private static final int COUNT_OBJ_DATATYPE = 0;
- private static final int COUNT_OBJ_ATTR = 0;
- private static final int COUNT_OBJ_ALL = (COUNT_OBJ_FILE
- + COUNT_OBJ_DATASET + COUNT_OBJ_GROUP + COUNT_OBJ_DATATYPE + COUNT_OBJ_ATTR);
- private static final int[] OBJ_COUNTS = { COUNT_OBJ_FILE,
- COUNT_OBJ_DATASET, COUNT_OBJ_GROUP, COUNT_OBJ_DATATYPE,
- COUNT_OBJ_ATTR, COUNT_OBJ_ALL };
- private static final int[] OBJ_TYPES = { HDF5Constants.H5F_OBJ_FILE,
- HDF5Constants.H5F_OBJ_DATASET, HDF5Constants.H5F_OBJ_GROUP,
- HDF5Constants.H5F_OBJ_DATATYPE, HDF5Constants.H5F_OBJ_ATTR,
- HDF5Constants.H5F_OBJ_ALL };
- long H5fid = HDF5Constants.H5I_INVALID_HID;
-
- private final void _deleteFile(String filename) {
+ private static final int COUNT_OBJ_ATTR = 0;
+ private static final int COUNT_OBJ_ALL =
+ (COUNT_OBJ_FILE + COUNT_OBJ_DATASET + COUNT_OBJ_GROUP + COUNT_OBJ_DATATYPE + COUNT_OBJ_ATTR);
+ private static final int[] OBJ_COUNTS = {COUNT_OBJ_FILE, COUNT_OBJ_DATASET, COUNT_OBJ_GROUP,
+ COUNT_OBJ_DATATYPE, COUNT_OBJ_ATTR, COUNT_OBJ_ALL};
+ private static final int[] OBJ_TYPES = {HDF5Constants.H5F_OBJ_FILE, HDF5Constants.H5F_OBJ_DATASET,
+ HDF5Constants.H5F_OBJ_GROUP, HDF5Constants.H5F_OBJ_DATATYPE,
+ HDF5Constants.H5F_OBJ_ATTR, HDF5Constants.H5F_OBJ_ALL};
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
@Before
- public void createH5file()
- throws HDF5LibraryException, NullPointerException {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws HDF5LibraryException, NullPointerException
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
H5fid = HDF5Constants.H5I_INVALID_HID;
}
_deleteFile(H5_FILE);
@@ -80,7 +89,8 @@ public class TestH5F {
}
@Test
- public void testH5Fget_create_plist() {
+ public void testH5Fget_create_plist()
+ {
long plist = HDF5Constants.H5I_INVALID_HID;
try {
@@ -90,13 +100,23 @@ public class TestH5F {
fail("H5.H5Fget_create_plist: " + err);
}
assertTrue(plist > 0);
- try {H5.H5Pclose(plist);} catch (HDF5LibraryException e) {e.printStackTrace();}
+ try {
+ H5.H5Pclose(plist);
+ }
+ catch (HDF5LibraryException e) {
+ e.printStackTrace();
+ }
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Fget_create_plist_closed() throws Throwable {
+ public void testH5Fget_create_plist_closed() throws Throwable
+ {
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
// it should fail because the file was closed.
@@ -104,7 +124,8 @@ public class TestH5F {
}
@Test
- public void testH5Fget_access_plist() {
+ public void testH5Fget_access_plist()
+ {
long plist = HDF5Constants.H5I_INVALID_HID;
try {
@@ -114,13 +135,23 @@ public class TestH5F {
fail("H5.H5Fget_access_plist: " + err);
}
assertTrue(plist > 0);
- try {H5.H5Pclose(plist);} catch (HDF5LibraryException e) {e.printStackTrace();}
+ try {
+ H5.H5Pclose(plist);
+ }
+ catch (HDF5LibraryException e) {
+ e.printStackTrace();
+ }
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Fget_access_plist_closed() throws Throwable {
+ public void testH5Fget_access_plist_closed() throws Throwable
+ {
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
// it should fail because the file was closed.
@@ -128,17 +159,21 @@ public class TestH5F {
}
@Test
- public void testH5Fget_intent_rdwr() {
+ public void testH5Fget_intent_rdwr()
+ {
int intent = 0;
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
H5fid = HDF5Constants.H5I_INVALID_HID;
}
try {
- H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
- HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
@@ -153,17 +188,21 @@ public class TestH5F {
}
@Test
- public void testH5Fget_intent_rdonly() {
+ public void testH5Fget_intent_rdonly()
+ {
int intent = 0;
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
H5fid = HDF5Constants.H5I_INVALID_HID;
}
try {
- H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY,
- HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
@@ -178,26 +217,26 @@ public class TestH5F {
}
@Test
- public void testH5Fget_fileno_same() {
+ public void testH5Fget_fileno_same()
+ {
long fileno1 = 0;
long fileno2 = 0;
- long fid1 = HDF5Constants.H5I_INVALID_HID;
- long fid2 = HDF5Constants.H5I_INVALID_HID;
+ long fid1 = HDF5Constants.H5I_INVALID_HID;
+ long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
- fid1 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ fid1 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(fid1, HDF5Constants.H5F_SCOPE_LOCAL);
assertTrue("H5Fcreate failed", fid1 > 0);
- fid2 = H5.H5Fopen(H5_FILE2, HDF5Constants.H5F_ACC_RDWR,
- HDF5Constants.H5P_DEFAULT);
+ fid2 = H5.H5Fopen(H5_FILE2, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
assertTrue("H5Fopen failed", fid2 > 0);
fileno1 = H5.H5Fget_fileno(fid1);
- assertTrue("H5Fget_fileno1="+fileno1, fileno1 > 0);
+ assertTrue("H5Fget_fileno1=" + fileno1, fileno1 > 0);
fileno2 = H5.H5Fget_fileno(fid2);
- assertTrue("H5Fget_fileno2="+fileno2, fileno2 > 0);
+ assertTrue("H5Fget_fileno2=" + fileno2, fileno2 > 0);
- assertEquals("fileno1["+fileno1+"]!=fileno2["+fileno2+"]", fileno1, fileno2);
+ assertEquals("fileno1[" + fileno1 + "]!=fileno2[" + fileno2 + "]", fileno1, fileno2);
}
catch (Throwable err) {
fail("testH5Fget_fileno_same: " + err);
@@ -209,23 +248,24 @@ public class TestH5F {
}
@Test
- public void testH5Fget_fileno_diff() {
+ public void testH5Fget_fileno_diff()
+ {
long fileno1 = 0;
long fileno2 = 0;
- long fid2 = HDF5Constants.H5I_INVALID_HID;
+ long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
- fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(fid2, HDF5Constants.H5F_SCOPE_LOCAL);
assertTrue("H5Fcreate failed", fid2 > 0);
fileno1 = H5.H5Fget_fileno(H5fid);
- assertTrue("H5Fget_fileno1="+fileno1, fileno1 > 0);
+ assertTrue("H5Fget_fileno1=" + fileno1, fileno1 > 0);
fileno2 = H5.H5Fget_fileno(fid2);
- assertTrue("H5Fget_fileno2="+fileno2, fileno2 > 0);
+ assertTrue("H5Fget_fileno2=" + fileno2, fileno2 > 0);
- assertNotEquals("fileno1["+fileno1+"]==fileno2["+fileno2+"]", fileno1, fileno2);
+ assertNotEquals("fileno1[" + fileno1 + "]==fileno2[" + fileno2 + "]", fileno1, fileno2);
}
catch (Throwable err) {
fail("testH5Fget_fileno_diff: " + err);
@@ -236,7 +276,8 @@ public class TestH5F {
}
@Test
- public void testH5Fget_obj_count() {
+ public void testH5Fget_obj_count()
+ {
long count = -1;
for (int i = 0; i < OBJ_TYPES.length; i++) {
@@ -252,10 +293,11 @@ public class TestH5F {
}
@Test
- public void testH5Fget_obj_ids() {
- long count = 0;
- long max_objs = 100;
- long[] obj_id_list = new long[(int)max_objs];
+ public void testH5Fget_obj_ids()
+ {
+ long count = 0;
+ long max_objs = 100;
+ long[] obj_id_list = new long[(int)max_objs];
int[] open_obj_counts = new int[OBJ_TYPES.length];
for (int i = 0; i < OBJ_TYPES.length; i++)
@@ -267,8 +309,7 @@ public class TestH5F {
for (int i = 0; i < OBJ_TYPES.length; i++) {
try {
- count = H5.H5Fget_obj_ids(H5fid, OBJ_TYPES[i], max_objs,
- obj_id_list);
+ count = H5.H5Fget_obj_ids(H5fid, OBJ_TYPES[i], max_objs, obj_id_list);
}
catch (Throwable err) {
fail("H5.H5Fget_obj_ids: " + err);
diff --git a/java/test/TestH5Fbasic.java b/java/test/TestH5Fbasic.java
index 4f3d928..37be943 100644
--- a/java/test/TestH5Fbasic.java
+++ b/java/test/TestH5Fbasic.java
@@ -31,45 +31,59 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Fbasic {
- @Rule public TestName testname = new TestName();
- private static final String H5_FILE = "testFb.h5";
+ @Rule
+ public TestName testname = new TestName();
+ private static final String H5_FILE = "testFb.h5";
private static final String TXT_FILE = "testFb.txt";
- long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
- private final void _deleteFile(String filename) {
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
@Before
- public void createH5file() throws HDF5LibraryException, NullPointerException {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws HDF5LibraryException, NullPointerException
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
_deleteFile(H5_FILE);
System.out.println();
}
@Test
- public void testH5Fcreate() {
+ public void testH5Fcreate()
+ {
assertTrue(H5fid > 0);
}
@Test
- public void testH5Fis_accessible() {
+ public void testH5Fis_accessible()
+ {
boolean isH5 = false;
try {
@@ -82,18 +96,19 @@ public class TestH5Fbasic {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Fcreate_EXCL() throws Throwable {
- H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_EXCL,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ public void testH5Fcreate_EXCL() throws Throwable
+ {
+ H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_EXCL, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Fopen_read_only() throws Throwable {
+ public void testH5Fopen_read_only() throws Throwable
+ {
long fid = HDF5Constants.H5I_INVALID_HID;
try {
- fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
- HDF5Constants.H5P_DEFAULT);
+ fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
@@ -108,8 +123,7 @@ public class TestH5Fbasic {
File file = new File(H5_FILE);
if (file.setWritable(false)) {
// this should fail.
- fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
- HDF5Constants.H5P_DEFAULT);
+ fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
try {
H5.H5Fclose(fid);
@@ -123,13 +137,13 @@ public class TestH5Fbasic {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Freopen_closed() throws Throwable {
- long fid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Freopen_closed() throws Throwable
+ {
+ long fid = HDF5Constants.H5I_INVALID_HID;
long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
- fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
- HDF5Constants.H5P_DEFAULT);
+ fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
@@ -146,13 +160,13 @@ public class TestH5Fbasic {
}
@Test
- public void testH5Freopen() {
- long fid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Freopen()
+ {
+ long fid = HDF5Constants.H5I_INVALID_HID;
long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
- fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
- HDF5Constants.H5P_DEFAULT);
+ fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
@@ -180,12 +194,12 @@ public class TestH5Fbasic {
}
@Test
- public void testH5Fclose() {
+ public void testH5Fclose()
+ {
long fid = HDF5Constants.H5I_INVALID_HID;
try {
- fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
- HDF5Constants.H5P_DEFAULT);
+ fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
@@ -200,12 +214,12 @@ public class TestH5Fbasic {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Fclose_twice() throws Throwable {
+ public void testH5Fclose_twice() throws Throwable
+ {
long fid = HDF5Constants.H5I_INVALID_HID;
try {
- fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
- HDF5Constants.H5P_DEFAULT);
+ fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
@@ -223,7 +237,8 @@ public class TestH5Fbasic {
}
@Test
- public void testH5Fget_freespace() {
+ public void testH5Fget_freespace()
+ {
long freeSpace = 0;
try {
@@ -238,7 +253,8 @@ public class TestH5Fbasic {
// TODO add/and delete objects and test freespace
@Test
- public void testH5Fget_filesize() {
+ public void testH5Fget_filesize()
+ {
long fileSize = 0;
try {
@@ -253,7 +269,8 @@ public class TestH5Fbasic {
// TODO add/and delete objects and test freespace
@Test
- public void testH5Fget_mdc_hit_rate() {
+ public void testH5Fget_mdc_hit_rate()
+ {
double rate;
try {
@@ -265,8 +282,9 @@ public class TestH5Fbasic {
}
@Test
- public void testH5Fget_mdc_size() {
- int nentries = -1;
+ public void testH5Fget_mdc_size()
+ {
+ int nentries = -1;
long cache_sizes[] = new long[3];
try {
@@ -281,7 +299,8 @@ public class TestH5Fbasic {
// TODO: test more cases of different cache sizes.
@Test
- public void testH5Freset_mdc_hit_rate_stats() {
+ public void testH5Freset_mdc_hit_rate_stats()
+ {
try {
H5.H5Freset_mdc_hit_rate_stats(H5fid);
@@ -292,7 +311,8 @@ public class TestH5Fbasic {
}
@Test
- public void testH5Fget_name() {
+ public void testH5Fget_name()
+ {
String fname = null;
try {
@@ -306,7 +326,8 @@ public class TestH5Fbasic {
}
@Test
- public void testH5Fclear_elink_file_cache() {
+ public void testH5Fclear_elink_file_cache()
+ {
try {
H5.H5Fclear_elink_file_cache(H5fid);
@@ -317,7 +338,8 @@ public class TestH5Fbasic {
}
@Test
- public void testH5F_dset_no_attrs_hint() {
+ public void testH5F_dset_no_attrs_hint()
+ {
boolean ret_val_id = true;
try {
ret_val_id = H5.H5Fget_dset_no_attrs_hint(H5fid);
diff --git a/java/test/TestH5Fparams.java b/java/test/TestH5Fparams.java
index 0376485..6accc3b 100644
--- a/java/test/TestH5Fparams.java
+++ b/java/test/TestH5Fparams.java
@@ -32,46 +32,54 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Fparams {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
@Before
- public void checkOpenIDs() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void checkOpenIDs()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@After
- public void nextTestName() {
+ public void nextTestName()
+ {
System.out.println();
}
@Test(expected = NullPointerException.class)
- public void testH5Fcreate_null() throws Throwable {
- H5.H5Fcreate(null, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ public void testH5Fcreate_null() throws Throwable
+ {
+ H5.H5Fcreate(null, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = NullPointerException.class)
- public void testH5Fopen_null() throws Throwable {
+ public void testH5Fopen_null() throws Throwable
+ {
H5.H5Fopen(null, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = NullPointerException.class)
- public void testH5Fis_accessible_null() throws Throwable {
+ public void testH5Fis_accessible_null() throws Throwable
+ {
H5.H5Fis_accessible(null, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Fmount_null() throws Throwable {
+ public void testH5Fmount_null() throws Throwable
+ {
H5.H5Fmount(-1, null, -1, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = NullPointerException.class)
- public void testH5Funmount_null() throws Throwable {
+ public void testH5Funmount_null() throws Throwable
+ {
H5.H5Funmount(-1, null);
}
@Ignore
- public void testH5Fis_hdf5_text() {
+ public void testH5Fis_hdf5_text()
+ {
File txtFile = null;
boolean isH5 = false;
@@ -91,25 +99,27 @@ public class TestH5Fparams {
txtFile.delete();
}
catch (SecurityException e) {
- ;// e.printStackTrace();
+ ; // e.printStackTrace();
}
}
- @Test//(expected = HDF5LibraryException.class)
- public void testH5Fclose_negative() throws Throwable {
+ @Test //(expected = HDF5LibraryException.class)
+ public void testH5Fclose_negative() throws Throwable
+ {
// cannot close a file with negative id.
int fid = H5.H5Fclose(-1);
assertTrue(fid == 0);
}
@Test
- public void testH5Fcreate() {
- long fid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Fcreate()
+ {
+ long fid = HDF5Constants.H5I_INVALID_HID;
File file = null;
try {
- fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
if (fid > 0) {
H5.H5Fclose(fid);
}
@@ -124,18 +134,19 @@ public class TestH5Fparams {
file.delete();
}
catch (SecurityException e) {
- ;// e.printStackTrace();
+ ; // e.printStackTrace();
}
}
}
@Test
- public void testH5Fflush_global() {
+ public void testH5Fflush_global()
+ {
long fid = HDF5Constants.H5I_INVALID_HID;
try {
- fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
@@ -156,12 +167,13 @@ public class TestH5Fparams {
}
@Test
- public void testH5Fflush_local() {
+ public void testH5Fflush_local()
+ {
long fid = HDF5Constants.H5I_INVALID_HID;
try {
- fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
@@ -182,13 +194,14 @@ public class TestH5Fparams {
}
@Test
- public void testH5Fget_info() {
+ public void testH5Fget_info()
+ {
long fid = HDF5Constants.H5I_INVALID_HID;
try {
try {
- fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fcreate: " + err);
@@ -205,21 +218,26 @@ public class TestH5Fparams {
}
}
catch (Exception e) {
- e.printStackTrace();
+ e.printStackTrace();
}
finally {
- try {H5.H5Fclose(fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(fid);
+ }
+ catch (Exception ex) {
+ }
}
}
- @Ignore//(expected = HDF5FunctionArgumentException.class)
- public void testH5Fset_libver_bounds_invalidlow() throws Throwable {
+ @Ignore //(expected = HDF5FunctionArgumentException.class)
+ public void testH5Fset_libver_bounds_invalidlow() throws Throwable
+ {
long fid = HDF5Constants.H5I_INVALID_HID;
try {
try {
- fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fcreate: " + err);
@@ -227,26 +245,36 @@ public class TestH5Fparams {
H5.H5Fset_libver_bounds(fid, 5, HDF5Constants.H5F_LIBVER_LATEST);
}
finally {
- try {H5.H5Fclose(fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(fid);
+ }
+ catch (Exception ex) {
+ }
}
}
- @Ignore//(expected = HDF5FunctionArgumentException.class)
- public void testH5Fset_libver_bounds_invalidhigh() throws Throwable {
+ @Ignore //(expected = HDF5FunctionArgumentException.class)
+ public void testH5Fset_libver_bounds_invalidhigh() throws Throwable
+ {
long fid = HDF5Constants.H5I_INVALID_HID;
try {
try {
- fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fcreate: " + err);
}
- H5.H5Fset_libver_bounds(fid, HDF5Constants.H5F_LIBVER_LATEST, HDF5Constants.H5F_LIBVER_LATEST+1);
+ H5.H5Fset_libver_bounds(fid, HDF5Constants.H5F_LIBVER_LATEST,
+ HDF5Constants.H5F_LIBVER_LATEST + 1);
}
finally {
- try {H5.H5Fclose(fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(fid);
+ }
+ catch (Exception ex) {
+ }
}
}
}
diff --git a/java/test/TestH5Fswmr.java b/java/test/TestH5Fswmr.java
index 1ec78fe..823640d 100644
--- a/java/test/TestH5Fswmr.java
+++ b/java/test/TestH5Fswmr.java
@@ -29,25 +29,31 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Fswmr {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_FILE = "testswmr.h5";
- long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5fapl = HDF5Constants.H5I_INVALID_HID;
long H5fcpl = HDF5Constants.H5I_INVALID_HID;
- private final void _deleteFile(String filename) {
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
@Before
- public void createH5file()
- throws HDF5LibraryException, NullPointerException {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws HDF5LibraryException, NullPointerException
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
H5fapl = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS);
@@ -59,17 +65,30 @@ public class TestH5Fswmr {
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5fapl > 0) {
- try {H5.H5Pclose(H5fapl);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(H5fapl);
+ }
+ catch (Exception ex) {
+ }
H5fapl = HDF5Constants.H5I_INVALID_HID;
}
if (H5fcpl > 0) {
- try {H5.H5Pclose(H5fcpl);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(H5fcpl);
+ }
+ catch (Exception ex) {
+ }
H5fcpl = HDF5Constants.H5I_INVALID_HID;
}
- if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ if (H5fid > 0) {
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
H5fid = HDF5Constants.H5I_INVALID_HID;
}
_deleteFile(H5_FILE);
@@ -77,7 +96,8 @@ public class TestH5Fswmr {
}
@Test
- public void testH5Fstart_swmr_write() {
+ public void testH5Fstart_swmr_write()
+ {
try {
H5.H5Fstart_swmr_write(H5fid);
}
@@ -87,7 +107,8 @@ public class TestH5Fswmr {
}
@Test
- public void testH5Fswmr_read_attempts() {
+ public void testH5Fswmr_read_attempts()
+ {
long read_attempts = 0;
try {
diff --git a/java/test/TestH5G.java b/java/test/TestH5G.java
index edf2cbe..1f6da31 100644
--- a/java/test/TestH5G.java
+++ b/java/test/TestH5G.java
@@ -32,20 +32,22 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5G {
- @Rule public TestName testname = new TestName();
- private static final String H5_FILE = "testG.h5";
- private static final String H5_FILE2 = "testG2.h5";
- private static final String[] GROUPS = { "/G1", "/G1/G11", "/G1/G12",
- "/G1/G11/G111", "/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114" };
- private static final String[] GROUPS2 = { "/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"};
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5fid2 = HDF5Constants.H5I_INVALID_HID;
-
- private final long _createGroup(long fid, String name) {
+ @Rule
+ public TestName testname = new TestName();
+ private static final String H5_FILE = "testG.h5";
+ private static final String H5_FILE2 = "testG2.h5";
+ private static final String[] GROUPS = {"/G1", "/G1/G11", "/G1/G12", "/G1/G11/G111",
+ "/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114"};
+ private static final String[] GROUPS2 = {"/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"};
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5fid2 = HDF5Constants.H5I_INVALID_HID;
+
+ private final long _createGroup(long fid, String name)
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
try {
- gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -56,41 +58,51 @@ public class TestH5G {
return gid;
}
- private final long _createGroup2(long fid, String name) {
- long gid = HDF5Constants.H5I_INVALID_HID;
+ private final long _createGroup2(long fid, String name)
+ {
+ long gid = HDF5Constants.H5I_INVALID_HID;
long gcpl = HDF5Constants.H5I_INVALID_HID;
try {
- gcpl = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); //create gcpl
+ gcpl = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); // create gcpl
}
catch (final Exception ex) {
fail("H5.H5Pcreate(): " + ex);
}
assertTrue("TestH5G._createGroup2: ", gcpl >= 0);
try {
- H5.H5Pset_link_creation_order(gcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED
- + HDF5Constants.H5P_CRT_ORDER_INDEXED); // Set link creation order
+ H5.H5Pset_link_creation_order(gcpl,
+ HDF5Constants.H5P_CRT_ORDER_TRACKED +
+ HDF5Constants.H5P_CRT_ORDER_INDEXED); // Set link creation order
}
catch (final Exception ex) {
- try {H5.H5Pclose(gcpl);} catch (final Exception exx) {}
+ try {
+ H5.H5Pclose(gcpl);
+ }
+ catch (final Exception exx) {
+ }
fail("H5.H5Pset_link_creation_order: " + ex);
}
try {
- gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
- gcpl, HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, gcpl, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Gcreate: " + err);
}
finally {
- try {H5.H5Pclose(gcpl);} catch (final Exception ex) {}
+ try {
+ H5.H5Pclose(gcpl);
+ }
+ catch (final Exception ex) {
+ }
}
assertTrue("TestH5G._createGroup2: ", gid > 0);
return gid;
}
- private final long _openGroup(long fid, String name) {
+ private final long _openGroup(long fid, String name)
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT);
@@ -105,26 +117,31 @@ public class TestH5G {
return gid;
}
- private final void _deleteFile(String filename) {
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
@Before
- public void createH5file()
- throws HDF5LibraryException, NullPointerException {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws HDF5LibraryException, NullPointerException
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
H5fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -137,12 +154,20 @@ public class TestH5G {
for (int i = 0; i < GROUPS.length; i++) {
gid = _createGroup(H5fid, GROUPS[i]);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
for (int i = 0; i < GROUPS2.length; i++) {
gid = _createGroup2(H5fid2, GROUPS2[i]);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
@@ -150,20 +175,30 @@ public class TestH5G {
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
if (H5fid2 > 0) {
- try {H5.H5Fclose(H5fid2);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid2);
+ }
+ catch (Exception ex) {
+ }
}
- _deleteFile(H5_FILE);
- _deleteFile(H5_FILE2);
- System.out.println();
+ _deleteFile(H5_FILE);
+ _deleteFile(H5_FILE2);
+ System.out.println();
}
@Test
- public void testH5Gopen() {
+ public void testH5Gopen()
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
for (int i = 0; i < GROUPS.length; i++) {
try {
@@ -183,7 +218,8 @@ public class TestH5G {
}
@Test
- public void testH5Gget_create_plist() {
+ public void testH5Gget_create_plist()
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
long pid = HDF5Constants.H5I_INVALID_HID;
@@ -215,7 +251,8 @@ public class TestH5G {
}
@Test
- public void testH5Gget_info() {
+ public void testH5Gget_info()
+ {
H5G_info_t info = null;
for (int i = 0; i < GROUPS.length; i++) {
@@ -232,13 +269,13 @@ public class TestH5G {
}
@Test
- public void testH5Gget_info_by_name() {
+ public void testH5Gget_info_by_name()
+ {
H5G_info_t info = null;
for (int i = 0; i < GROUPS.length; i++) {
try {
- info = H5.H5Gget_info_by_name(H5fid, GROUPS[i],
- HDF5Constants.H5P_DEFAULT);
+ info = H5.H5Gget_info_by_name(H5fid, GROUPS[i], HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -249,13 +286,13 @@ public class TestH5G {
}
@Test
- public void testH5Gget_info_by_idx() {
+ public void testH5Gget_info_by_idx()
+ {
H5G_info_t info = null;
for (int i = 0; i < 2; i++) {
try {
- info = H5.H5Gget_info_by_idx(H5fid, "/G1",
- HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC,
- i, HDF5Constants.H5P_DEFAULT);
+ info = H5.H5Gget_info_by_idx(H5fid, "/G1", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, i, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -266,7 +303,8 @@ public class TestH5G {
}
@Test
- public void testH5Gget_obj_info_all() {
+ public void testH5Gget_obj_info_all()
+ {
H5G_info_t info = null;
long gid = _openGroup(H5fid, GROUPS[0]);
@@ -279,27 +317,31 @@ public class TestH5G {
fail("TestH5G.testH5Gget_obj_info_all: H5.H5Gget_info: " + err);
}
finally {
- try {H5.H5Gclose(gid);} catch (Exception ex) { }
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
assertNotNull("TestH5G.testH5Gget_obj_info_all: ", info);
assertTrue("TestH5G.testH5Gget_obj_info_all: number of links is empty", info.nlinks > 0);
- String objNames[] = new String[(int) info.nlinks];
- int objTypes[] = new int[(int) info.nlinks];
- int lnkTypes[] = new int[(int) info.nlinks];
- H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks];
+ String objNames[] = new String[(int)info.nlinks];
+ int objTypes[] = new int[(int)info.nlinks];
+ int lnkTypes[] = new int[(int)info.nlinks];
+ H5O_token_t objTokens[] = new H5O_token_t[(int)info.nlinks];
int names_found = 0;
try {
- names_found = H5.H5Gget_obj_info_all(H5fid, GROUPS[0], objNames,
- objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME);
+ names_found = H5.H5Gget_obj_info_all(H5fid, GROUPS[0], objNames, objTypes, lnkTypes, objTokens,
+ HDF5Constants.H5_INDEX_NAME);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_all: H5.H5Gget_obj_info_all: " + err);
}
- assertTrue("number found[" + names_found + "] different than expected["
- + objNames.length + "]", names_found == objNames.length);
+ assertTrue("number found[" + names_found + "] different than expected[" + objNames.length + "]",
+ names_found == objNames.length);
for (int i = 0; i < objNames.length; i++) {
assertNotNull("name #" + i + " does not exist", objNames[i]);
assertTrue("TestH5G.testH5Gget_obj_info_all: ", objNames[i].length() > 0);
@@ -307,7 +349,8 @@ public class TestH5G {
}
@Test
- public void testH5Gget_obj_info_all_gid() {
+ public void testH5Gget_obj_info_all_gid()
+ {
H5G_info_t info = null;
long gid = _openGroup(H5fid, GROUPS[0]);
@@ -316,25 +359,27 @@ public class TestH5G {
info = H5.H5Gget_info(gid);
assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: ", info);
assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number of links is empty", info.nlinks > 0);
- String objNames[] = new String[(int) info.nlinks];
- H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks];
- int lnkTypes[] = new int[(int) info.nlinks];
- int objTypes[] = new int[(int) info.nlinks];
+ String objNames[] = new String[(int)info.nlinks];
+ H5O_token_t objTokens[] = new H5O_token_t[(int)info.nlinks];
+ int lnkTypes[] = new int[(int)info.nlinks];
+ int objTypes[] = new int[(int)info.nlinks];
int names_found = 0;
try {
- names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes,
- objTokens, HDF5Constants.H5_INDEX_NAME);
+ names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes, objTokens,
+ HDF5Constants.H5_INDEX_NAME);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_all_gid: H5.H5Gget_obj_info_all: " + err);
}
- assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number found[" + names_found + "] different than expected["
- + objNames.length + "]", names_found == objNames.length);
+ assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number found[" + names_found +
+ "] different than expected[" + objNames.length + "]",
+ names_found == objNames.length);
for (int i = 0; i < objNames.length; i++) {
- assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: name #" + i + " does not exist", objNames[i]);
+ assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: name #" + i + " does not exist",
+ objNames[i]);
assertTrue("TestH5G.testH5Gget_obj_info_all_gid: ", objNames[i].length() > 0);
}
}
@@ -343,12 +388,17 @@ public class TestH5G {
fail("TestH5G.testH5Gget_obj_info_all_gid: H5.H5Gget_info: " + err);
}
finally {
- try {H5.H5Gclose(gid);} catch (Exception ex) { }
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Gget_obj_info_all_gid2() {
+ public void testH5Gget_obj_info_all_gid2()
+ {
H5G_info_t info = null;
long gid = _openGroup(H5fid, GROUPS[1]);
@@ -357,25 +407,27 @@ public class TestH5G {
info = H5.H5Gget_info(gid);
assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: ", info);
assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number of links is empty", info.nlinks > 0);
- String objNames[] = new String[(int) info.nlinks];
- H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks];
- int lnkTypes[] = new int[(int) info.nlinks];
- int objTypes[] = new int[(int) info.nlinks];
+ String objNames[] = new String[(int)info.nlinks];
+ H5O_token_t objTokens[] = new H5O_token_t[(int)info.nlinks];
+ int lnkTypes[] = new int[(int)info.nlinks];
+ int objTypes[] = new int[(int)info.nlinks];
int names_found = 0;
try {
- names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes,
- objTokens, HDF5Constants.H5_INDEX_NAME);
+ names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes, objTokens,
+ HDF5Constants.H5_INDEX_NAME);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_all_gid2: H5.H5Gget_obj_info_all: " + err);
}
- assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number found[" + names_found + "] different than expected["
- + objNames.length + "]", names_found == objNames.length);
+ assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number found[" + names_found +
+ "] different than expected[" + objNames.length + "]",
+ names_found == objNames.length);
for (int i = 0; i < objNames.length; i++) {
- assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: name #" + i + " does not exist", objNames[i]);
+ assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: name #" + i + " does not exist",
+ objNames[i]);
assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: ", objNames[i].length() > 0);
}
}
@@ -384,73 +436,91 @@ public class TestH5G {
fail("TestH5G.testH5Gget_obj_info_all_gid2: H5.H5Gget_info: " + err);
}
finally {
- try {H5.H5Gclose(gid);} catch (Exception ex) { }
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Gget_obj_info_max() {
- long gid = _openGroup(H5fid, GROUPS[0]);
- long groups_max_size = GROUPS.length + 1;
- String objNames[] = new String[(int)groups_max_size];
- int objTypes[] = new int[(int)groups_max_size];
- int lnkTypes[] = new int[(int)groups_max_size];
+ public void testH5Gget_obj_info_max()
+ {
+ long gid = _openGroup(H5fid, GROUPS[0]);
+ long groups_max_size = GROUPS.length + 1;
+ String objNames[] = new String[(int)groups_max_size];
+ int objTypes[] = new int[(int)groups_max_size];
+ int lnkTypes[] = new int[(int)groups_max_size];
H5O_token_t objTokens[] = new H5O_token_t[(int)groups_max_size];
int names_found = 0;
try {
- names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes,
- objTokens, groups_max_size);
+ names_found =
+ H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes, objTokens, groups_max_size);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_max: H5.H5Gget_obj_info_max: " + err);
}
finally {
- try {H5.H5Gclose(gid);} catch (Exception ex) { }
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
// expected number does not include root group
- assertTrue("TestH5G.testH5Gget_obj_info_max: number found[" + names_found + "] different than expected["
- + (GROUPS.length - 1) + "]", names_found == (GROUPS.length - 1));
- for (int i = 0; i < GROUPS.length-1; i++) {
- assertNotNull("TestH5G.testH5Gget_obj_info_max: name #"+i+" does not exist",objNames[i]);
- assertTrue("TestH5G.testH5Gget_obj_info_max: ", objNames[i].length()>0);
+ assertTrue("TestH5G.testH5Gget_obj_info_max: number found[" + names_found +
+ "] different than expected[" + (GROUPS.length - 1) + "]",
+ names_found == (GROUPS.length - 1));
+ for (int i = 0; i < GROUPS.length - 1; i++) {
+ assertNotNull("TestH5G.testH5Gget_obj_info_max: name #" + i + " does not exist", objNames[i]);
+ assertTrue("TestH5G.testH5Gget_obj_info_max: ", objNames[i].length() > 0);
}
}
@Test
- public void testH5Gget_obj_info_max_limit() {
- long gid = _openGroup(H5fid, GROUPS[0]);
- long groups_max_size = GROUPS.length - 3;
- String objNames[] = new String[(int)groups_max_size];
- int objTypes[] = new int[(int)groups_max_size];
- int lnkTypes[] = new int[(int)groups_max_size];
+ public void testH5Gget_obj_info_max_limit()
+ {
+ long gid = _openGroup(H5fid, GROUPS[0]);
+ long groups_max_size = GROUPS.length - 3;
+ String objNames[] = new String[(int)groups_max_size];
+ int objTypes[] = new int[(int)groups_max_size];
+ int lnkTypes[] = new int[(int)groups_max_size];
H5O_token_t objTokens[] = new H5O_token_t[(int)groups_max_size];
int names_found = 0;
try {
- names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes,
- objTokens, groups_max_size);
+ names_found =
+ H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes, objTokens, groups_max_size);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_max_limit: H5.H5Gget_obj_info_max: " + err);
}
finally {
- try {H5.H5Gclose(gid);} catch (Exception ex) { }
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
- assertTrue("TestH5G.testH5Gget_obj_info_max_limit: number found[" + names_found + "] different than expected["
- + groups_max_size + "]", names_found == groups_max_size);
+ assertTrue("TestH5G.testH5Gget_obj_info_max_limit: number found[" + names_found +
+ "] different than expected[" + groups_max_size + "]",
+ names_found == groups_max_size);
for (int i = 0; i < objNames.length; i++) {
- assertNotNull("TestH5G.testH5Gget_obj_info_max_limit: name #" + i + " does not exist", objNames[i]);
+ assertNotNull("TestH5G.testH5Gget_obj_info_max_limit: name #" + i + " does not exist",
+ objNames[i]);
assertTrue("TestH5G.testH5Gget_obj_info_max_limit: ", objNames[i].length() > 0);
}
}
@Test
- public void testH5Gget_obj_info_all_byIndexType() {
+ public void testH5Gget_obj_info_all_byIndexType()
+ {
H5G_info_t info = null;
long gid = _openGroup(H5fid2, GROUPS2[0]);
@@ -463,41 +533,44 @@ public class TestH5G {
fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_info: " + err);
}
finally {
- try {H5.H5Gclose(gid);} catch (Exception ex) { }
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
assertNotNull("TestH5G.testH5Gget_obj_info_all_byIndexType: ", info);
assertTrue("TestH5G.testH5Gget_obj_info_all_byIndexType: number of links is empty", info.nlinks > 0);
- String objNames[] = new String[(int) info.nlinks];
- int objTypes[] = new int[(int) info.nlinks];
- int lnkTypes[] = new int[(int) info.nlinks];
- H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks];
+ String objNames[] = new String[(int)info.nlinks];
+ int objTypes[] = new int[(int)info.nlinks];
+ int lnkTypes[] = new int[(int)info.nlinks];
+ H5O_token_t objTokens[] = new H5O_token_t[(int)info.nlinks];
try {
- H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames,
- objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_CRT_ORDER);
+ H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames, objTypes, lnkTypes, objTokens,
+ HDF5Constants.H5_INDEX_CRT_ORDER);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_obj_info_all: " + err);
}
- assertEquals("G12",objNames[1]);
- assertEquals("G13", objNames[2] );
- assertEquals("G11", objNames[3] );
+ assertEquals("G12", objNames[1]);
+ assertEquals("G13", objNames[2]);
+ assertEquals("G11", objNames[3]);
try {
- H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames,
- objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME);
+ H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames, objTypes, lnkTypes, objTokens,
+ HDF5Constants.H5_INDEX_NAME);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_obj_info_all: " + err);
}
- assertEquals("G12",objNames[1]);
- assertEquals("G13", objNames[2] );
- assertEquals("G14", objNames[3] );
+ assertEquals("G12", objNames[1]);
+ assertEquals("G13", objNames[2]);
+ assertEquals("G14", objNames[3]);
}
-
}
diff --git a/java/test/TestH5Gbasic.java b/java/test/TestH5Gbasic.java
index 6e2e450..8ec04dd 100644
--- a/java/test/TestH5Gbasic.java
+++ b/java/test/TestH5Gbasic.java
@@ -30,15 +30,17 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Gbasic {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_FILE = "testGb.h5";
- long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
- private final long _createGroup(long fid, String name) {
+ private final long _createGroup(long fid, String name)
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
try {
- gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -48,64 +50,81 @@ public class TestH5Gbasic {
return gid;
}
- private final void _deleteFile(String filename) {
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
@Before
- public void createH5file()
- throws HDF5LibraryException, NullPointerException {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws HDF5LibraryException, NullPointerException
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
_deleteFile(H5_FILE);
System.out.println();
}
- @Test//(expected = HDF5LibraryException.class)
- public void testH5Gclose_invalid() throws Throwable {
+ @Test //(expected = HDF5LibraryException.class)
+ public void testH5Gclose_invalid() throws Throwable
+ {
long gid = H5.H5Gclose(-1);
assertTrue(gid == 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Gcreate_null() throws Throwable {
+ public void testH5Gcreate_null() throws Throwable
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
// it should fail because the group name is null
- gid = H5.H5Gcreate(H5fid, null, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gcreate(H5fid, null, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Gcreate_invalid() throws Throwable {
- H5.H5Gcreate(-1, "Invalid ID", HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ public void testH5Gcreate_invalid() throws Throwable
+ {
+ H5.H5Gcreate(-1, "Invalid ID", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Gcreate() {
+ public void testH5Gcreate()
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
try {
- gid = H5.H5Gcreate(H5fid, "/testH5Gcreate",
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gcreate(H5fid, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -113,11 +132,16 @@ public class TestH5Gbasic {
}
assertTrue(gid > 0);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
@Test
- public void testH5Gclose() {
+ public void testH5Gclose()
+ {
long gid = _createGroup(H5fid, "/testH5Gcreate");
assertTrue(gid > 0);
@@ -130,24 +154,28 @@ public class TestH5Gbasic {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Gcreate_exists() throws Throwable {
+ public void testH5Gcreate_exists() throws Throwable
+ {
long gid = _createGroup(H5fid, "/testH5Gcreate");
assertTrue(gid > 0);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
// it should failed now because the group already exists in file
- gid = H5.H5Gcreate(H5fid, "/testH5Gcreate",
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gcreate(H5fid, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Gcreate_anon() {
+ public void testH5Gcreate_anon()
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
try {
- gid = H5.H5Gcreate_anon(H5fid, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gcreate_anon(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -155,42 +183,61 @@ public class TestH5Gbasic {
}
assertTrue(gid > 0);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
@Test(expected = NullPointerException.class)
- public void testH5Gopen_null() throws Throwable {
+ public void testH5Gopen_null() throws Throwable
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
gid = H5.H5Gopen(H5fid, null, HDF5Constants.H5P_DEFAULT);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Gopen_invalid() throws Throwable {
+ public void testH5Gopen_invalid() throws Throwable
+ {
H5.H5Gopen(-1, "Invalid ID", HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Gopen_not_exists() throws Throwable {
+ public void testH5Gopen_not_exists() throws Throwable
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
- gid = H5.H5Gopen(H5fid, "Never_created", HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gopen(H5fid, "Never_created", HDF5Constants.H5P_DEFAULT);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
@Test
- public void testH5Gopen() {
+ public void testH5Gopen()
+ {
long gid = _createGroup(H5fid, "/testH5Gcreate");
assertTrue(gid > 0);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
try {
- gid = H5.H5Gopen(H5fid, "/testH5Gcreate",
- HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gopen(H5fid, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -198,16 +245,22 @@ public class TestH5Gbasic {
}
assertTrue(gid > 0);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Gget_create_plist_invalid() throws Throwable {
+ public void testH5Gget_create_plist_invalid() throws Throwable
+ {
H5.H5Gget_create_plist(-1);
}
@Test
- public void testH5Gget_create_plist() {
+ public void testH5Gget_create_plist()
+ {
long pid = HDF5Constants.H5I_INVALID_HID;
long gid = _createGroup(H5fid, "/testH5Gcreate");
assertTrue(gid > 0);
@@ -216,126 +269,173 @@ public class TestH5Gbasic {
pid = H5.H5Gget_create_plist(gid);
}
catch (Throwable err) {
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
err.printStackTrace();
fail("H5.H5Gget_create_plist: " + err);
}
assertTrue(pid > 0);
- try {H5.H5Pclose(pid);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(pid);
+ }
+ catch (Exception ex) {
+ }
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Gget_info_invalid() throws Throwable {
+ public void testH5Gget_info_invalid() throws Throwable
+ {
H5.H5Gget_info(-1);
}
@Test
- public void testH5Gget_info() {
+ public void testH5Gget_info()
+ {
H5G_info_t info = null;
- long gid = _createGroup(H5fid, "/testH5Gcreate");
+ long gid = _createGroup(H5fid, "/testH5Gcreate");
assertTrue(gid > 0);
try {
info = H5.H5Gget_info(gid);
}
catch (Throwable err) {
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
err.printStackTrace();
fail("H5.H5Gget_info: " + err);
}
assertNotNull(info);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
@Test(expected = NullPointerException.class)
- public void testH5Gget_info_by_name_null() throws Throwable {
+ public void testH5Gget_info_by_name_null() throws Throwable
+ {
H5.H5Gget_info_by_name(-1, null, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Gget_info_by_name_invalid() throws Throwable {
+ public void testH5Gget_info_by_name_invalid() throws Throwable
+ {
H5.H5Gget_info_by_name(-1, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Gget_info_by_name_not_exists() throws Throwable {
- H5.H5Gget_info_by_name(H5fid, "/testH5Gcreate",
- HDF5Constants.H5P_DEFAULT);
+ public void testH5Gget_info_by_name_not_exists() throws Throwable
+ {
+ H5.H5Gget_info_by_name(H5fid, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Gget_info_by_name() {
+ public void testH5Gget_info_by_name()
+ {
H5G_info_t info = null;
- long gid = _createGroup(H5fid, "/testH5Gcreate");
+ long gid = _createGroup(H5fid, "/testH5Gcreate");
assertTrue(gid > 0);
try {
- info = H5.H5Gget_info_by_name(gid, "/testH5Gcreate",
- HDF5Constants.H5P_DEFAULT);
+ info = H5.H5Gget_info_by_name(gid, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
err.printStackTrace();
fail("H5.H5Gget_info_by_name: " + err);
}
assertNotNull(info);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
@Test
- public void testH5Gget_info_by_name_fileid() {
+ public void testH5Gget_info_by_name_fileid()
+ {
H5G_info_t info = null;
- long gid = _createGroup(H5fid, "/testH5Gcreate");
+ long gid = _createGroup(H5fid, "/testH5Gcreate");
assertTrue(gid > 0);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
try {
- info = H5.H5Gget_info_by_name(H5fid, "/testH5Gcreate",
- HDF5Constants.H5P_DEFAULT);
+ info = H5.H5Gget_info_by_name(H5fid, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
err.printStackTrace();
fail("H5.H5Gget_info_by_name: " + err);
}
assertNotNull(info);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
@Test(expected = NullPointerException.class)
- public void testH5Gget_info_by_idx_null() throws Throwable {
- H5.H5Gget_info_by_idx(-1, null, HDF5Constants.H5_INDEX_NAME,
- HDF5Constants.H5_ITER_INC, 1L, HDF5Constants.H5P_DEFAULT);
+ public void testH5Gget_info_by_idx_null() throws Throwable
+ {
+ H5.H5Gget_info_by_idx(-1, null, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 1L,
+ HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Gget_info_by_idx_invalid() throws Throwable {
- H5.H5Gget_info_by_idx(-1, "/testH5Gcreate", HDF5Constants.H5_INDEX_NAME,
- HDF5Constants.H5_ITER_INC, 1L, HDF5Constants.H5P_DEFAULT);
+ public void testH5Gget_info_by_idx_invalid() throws Throwable
+ {
+ H5.H5Gget_info_by_idx(-1, "/testH5Gcreate", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC,
+ 1L, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Gget_info_by_idx_not_exists() throws Throwable {
- H5.H5Gget_info_by_idx(H5fid, "/testH5Gcreate",
- HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 1L,
- HDF5Constants.H5P_DEFAULT);
+ public void testH5Gget_info_by_idx_not_exists() throws Throwable
+ {
+ H5.H5Gget_info_by_idx(H5fid, "/testH5Gcreate", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC,
+ 1L, HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Gget_info_by_idx() {
+ public void testH5Gget_info_by_idx()
+ {
H5G_info_t info = null;
- long gid = _createGroup(H5fid, "/testH5Gcreate");
+ long gid = _createGroup(H5fid, "/testH5Gcreate");
assertTrue(gid > 0);
try {
- info = H5.H5Gget_info_by_idx(gid, "/", HDF5Constants.H5_INDEX_NAME,
- HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ info = H5.H5Gget_info_by_idx(gid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -343,20 +443,28 @@ public class TestH5Gbasic {
}
assertNotNull(info);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
}
@Test
- public void testH5Gget_info_by_idx_fileid() {
+ public void testH5Gget_info_by_idx_fileid()
+ {
H5G_info_t info = null;
- long gid = _createGroup(H5fid, "/testH5Gcreate");
+ long gid = _createGroup(H5fid, "/testH5Gcreate");
assertTrue(gid > 0);
- try {H5.H5Gclose(gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(gid);
+ }
+ catch (Exception ex) {
+ }
try {
- info = H5.H5Gget_info_by_idx(H5fid, "/",
- HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0,
- HDF5Constants.H5P_DEFAULT);
+ info = H5.H5Gget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC,
+ 0, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -366,13 +474,14 @@ public class TestH5Gbasic {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Gflush_invalid() throws Throwable {
+ public void testH5Gflush_invalid() throws Throwable
+ {
H5.H5Gflush(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Grefresh_invalid() throws Throwable {
+ public void testH5Grefresh_invalid() throws Throwable
+ {
H5.H5Grefresh(-1);
}
-
}
diff --git a/java/test/TestH5Giterate.java b/java/test/TestH5Giterate.java
index 388d2ac..eb4b5bf 100644
--- a/java/test/TestH5Giterate.java
+++ b/java/test/TestH5Giterate.java
@@ -15,6 +15,7 @@ package test;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
@@ -28,11 +29,13 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Giterate {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_FILE = "h5ex_g_iterate.hdf";
- long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
- private final long _openGroup(long fid, String name) {
+ private final long _openGroup(long fid, String name)
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT);
@@ -47,14 +50,13 @@ public class TestH5Giterate {
}
@Before
- public void openH5file()
- throws HDF5LibraryException, NullPointerException {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void openH5file() throws HDF5LibraryException, NullPointerException
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
- H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY,
- HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -63,15 +65,21 @@ public class TestH5Giterate {
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
System.out.println();
}
@Test
- public void testH5Gget_obj_info_all() {
+ public void testH5Gget_obj_info_all()
+ {
H5G_info_t info = null;
long gid = _openGroup(H5fid, "/");
@@ -90,45 +98,46 @@ public class TestH5Giterate {
}
assertNotNull(info);
assertTrue("number of links is empty", info.nlinks > 0);
- String objNames[] = new String[(int) info.nlinks];
- int objTypes[] = new int[(int) info.nlinks];
- int lnkTypes[] = new int[(int) info.nlinks];
- H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks];
+ String objNames[] = new String[(int)info.nlinks];
+ int objTypes[] = new int[(int)info.nlinks];
+ int lnkTypes[] = new int[(int)info.nlinks];
+ H5O_token_t objTokens[] = new H5O_token_t[(int)info.nlinks];
int names_found = 0;
try {
- names_found = H5.H5Gget_obj_info_all(H5fid, "/", objNames,
- objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME);
+ names_found = H5.H5Gget_obj_info_all(H5fid, "/", objNames, objTypes, lnkTypes, objTokens,
+ HDF5Constants.H5_INDEX_NAME);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Gget_obj_info_all: " + err);
}
- assertTrue("number found[" + names_found + "] different than expected["
- + objNames.length + "]", names_found == objNames.length);
+ assertTrue("number found[" + names_found + "] different than expected[" + objNames.length + "]",
+ names_found == objNames.length);
for (int i = 0; i < objNames.length; i++) {
assertNotNull("name #" + i + " does not exist", objNames[i]);
assertTrue(objNames[i].length() > 0);
- if (objTypes[i]==HDF5Constants.H5O_TYPE_GROUP) {
- assertTrue("Group is index: "+i + " ",i==2);
- assertTrue("Group is : "+objNames[i] + " ",objNames[i].compareToIgnoreCase("G1")==0);
+ if (objTypes[i] == HDF5Constants.H5O_TYPE_GROUP) {
+ assertTrue("Group is index: " + i + " ", i == 2);
+ assertTrue("Group is : " + objNames[i] + " ", objNames[i].compareToIgnoreCase("G1") == 0);
}
- else if (objTypes[i]==HDF5Constants.H5O_TYPE_DATASET) {
- assertTrue("Dataset is index: "+i + " ",(i==0)||(i==3));
- if(i==0)
- assertTrue("Dataset is : "+objNames[i] + " ",objNames[i].compareToIgnoreCase("DS1")==0);
+ else if (objTypes[i] == HDF5Constants.H5O_TYPE_DATASET) {
+ assertTrue("Dataset is index: " + i + " ", (i == 0) || (i == 3));
+ if (i == 0)
+ assertTrue("Dataset is : " + objNames[i] + " ",
+ objNames[i].compareToIgnoreCase("DS1") == 0);
else
- assertTrue("Dataset is : "+objNames[i] + " ",objNames[i].compareToIgnoreCase("L1")==0);
+ assertTrue("Dataset is : " + objNames[i] + " ",
+ objNames[i].compareToIgnoreCase("L1") == 0);
}
- else if (objTypes[i]==HDF5Constants.H5O_TYPE_NAMED_DATATYPE) {
- assertTrue("Datatype is index: "+i + " ",i==1);
- assertTrue("Datatype is : "+objNames[i] + " ",objNames[i].compareToIgnoreCase("DT1")==0);
+ else if (objTypes[i] == HDF5Constants.H5O_TYPE_NAMED_DATATYPE) {
+ assertTrue("Datatype is index: " + i + " ", i == 1);
+ assertTrue("Datatype is : " + objNames[i] + " ", objNames[i].compareToIgnoreCase("DT1") == 0);
}
else {
fail(" Unknown at index: " + i + " " + objNames[i]);
}
}
}
-
}
diff --git a/java/test/TestH5Lbasic.java b/java/test/TestH5Lbasic.java
index a28fc3d..c81545b 100644
--- a/java/test/TestH5Lbasic.java
+++ b/java/test/TestH5Lbasic.java
@@ -20,8 +20,8 @@ import java.util.ArrayList;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.callbacks.H5L_iterate_t;
import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t;
+import hdf.hdf5lib.callbacks.H5L_iterate_t;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.structs.H5L_info_t;
@@ -32,19 +32,19 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Lbasic {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_FILE = "h5ex_g_iterateL1.hdf";
- long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
@Before
- public void openH5file()
- throws HDF5LibraryException, NullPointerException {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void openH5file() throws HDF5LibraryException, NullPointerException
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
- H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY,
- HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -53,15 +53,21 @@ public class TestH5Lbasic {
}
@After
- public void closeH5file() throws HDF5LibraryException {
+ public void closeH5file() throws HDF5LibraryException
+ {
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
System.out.println();
}
@Test
- public void testH5Lexists() {
+ public void testH5Lexists()
+ {
boolean link_exists = false;
try {
link_exists = H5.H5Lexists(H5fid, "None", HDF5Constants.H5P_DEFAULT);
@@ -70,7 +76,7 @@ public class TestH5Lbasic {
err.printStackTrace();
fail("H5.H5Lexists: " + err);
}
- assertFalse("H5Lexists ",link_exists);
+ assertFalse("H5Lexists ", link_exists);
try {
link_exists = H5.H5Lexists(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
}
@@ -78,7 +84,7 @@ public class TestH5Lbasic {
err.printStackTrace();
fail("H5.H5Lexists: " + err);
}
- assertTrue("H5Lexists ",link_exists);
+ assertTrue("H5Lexists ", link_exists);
try {
link_exists = H5.H5Lexists(H5fid, "G1/DS2", HDF5Constants.H5P_DEFAULT);
}
@@ -86,16 +92,18 @@ public class TestH5Lbasic {
err.printStackTrace();
fail("H5.H5Lexists: " + err);
}
- assertTrue("H5Lexists ",link_exists);
+ assertTrue("H5Lexists ", link_exists);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_info_not_exist() throws Throwable {
+ public void testH5Lget_info_not_exist() throws Throwable
+ {
H5.H5Lget_info(H5fid, "None", HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Lget_info_dataset() {
+ public void testH5Lget_info_dataset()
+ {
H5L_info_t link_info = null;
try {
link_info = H5.H5Lget_info(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
@@ -104,12 +112,13 @@ public class TestH5Lbasic {
err.printStackTrace();
fail("H5.H5Lget_info: " + err);
}
- assertFalse("H5Lget_info ",link_info==null);
- assertTrue("H5Lget_info link type",link_info.type==HDF5Constants.H5L_TYPE_HARD);
+ assertFalse("H5Lget_info ", link_info == null);
+ assertTrue("H5Lget_info link type", link_info.type == HDF5Constants.H5L_TYPE_HARD);
}
@Test
- public void testH5Lget_info_hardlink() {
+ public void testH5Lget_info_hardlink()
+ {
H5L_info_t link_info = null;
try {
link_info = H5.H5Lget_info(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
@@ -118,43 +127,53 @@ public class TestH5Lbasic {
err.printStackTrace();
fail("H5.H5Lget_info: " + err);
}
- assertFalse("H5Lget_info",link_info==null);
- assertTrue("H5Lget_info link type",link_info.type==HDF5Constants.H5L_TYPE_HARD);
+ assertFalse("H5Lget_info", link_info == null);
+ assertTrue("H5Lget_info link type", link_info.type == HDF5Constants.H5L_TYPE_HARD);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_info_by_idx_name_not_exist_name() throws Throwable {
- H5.H5Lget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ public void testH5Lget_info_by_idx_name_not_exist_name() throws Throwable
+ {
+ H5.H5Lget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0,
+ HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_info_by_idx_name_not_exist_create() throws Throwable {
- H5.H5Lget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ public void testH5Lget_info_by_idx_name_not_exist_create() throws Throwable
+ {
+ H5.H5Lget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0,
+ HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_info_by_idx_not_exist_name() throws Throwable {
- H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT);
+ public void testH5Lget_info_by_idx_not_exist_name() throws Throwable
+ {
+ H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5,
+ HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_info_by_idx_not_exist_create() throws Throwable {
- H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT);
+ public void testH5Lget_info_by_idx_not_exist_create() throws Throwable
+ {
+ H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5,
+ HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Lget_info_by_idx_n0() {
- H5L_info_t link_info = null;
+ public void testH5Lget_info_by_idx_n0()
+ {
+ H5L_info_t link_info = null;
H5L_info_t link_info2 = null;
try {
- link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_info_by_idx: " + err);
}
- assertFalse("H5Lget_info_by_idx",link_info==null);
- assertTrue("H5Lget_info_by_idx link type",link_info.type==HDF5Constants.H5L_TYPE_HARD);
+ assertFalse("H5Lget_info_by_idx", link_info == null);
+ assertTrue("H5Lget_info_by_idx link type", link_info.type == HDF5Constants.H5L_TYPE_HARD);
try {
link_info2 = H5.H5Lget_info(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
}
@@ -166,18 +185,20 @@ public class TestH5Lbasic {
}
@Test
- public void testH5Lget_info_by_idx_n3() {
- H5L_info_t link_info = null;
+ public void testH5Lget_info_by_idx_n3()
+ {
+ H5L_info_t link_info = null;
H5L_info_t link_info2 = null;
try {
- link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT);
+ link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_info_by_idx: " + err);
}
- assertFalse("H5Lget_info_by_idx",link_info==null);
- assertTrue("H5Lget_info_by_idx link type",link_info.type==HDF5Constants.H5L_TYPE_HARD);
+ assertFalse("H5Lget_info_by_idx", link_info == null);
+ assertTrue("H5Lget_info_by_idx link type", link_info.type == HDF5Constants.H5L_TYPE_HARD);
try {
link_info2 = H5.H5Lget_info(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
}
@@ -189,44 +210,52 @@ public class TestH5Lbasic {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_name_by_idx_not_exist() throws Throwable {
- H5.H5Lget_name_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ public void testH5Lget_name_by_idx_not_exist() throws Throwable
+ {
+ H5.H5Lget_name_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0,
+ HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Lget_name_by_idx_n0() {
+ public void testH5Lget_name_by_idx_n0()
+ {
String link_name = null;
try {
- link_name = H5.H5Lget_name_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ link_name = H5.H5Lget_name_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_name_by_idx: " + err);
}
- assertFalse("H5Lget_name_by_idx ",link_name==null);
- assertTrue("Link Name ",link_name.compareTo("DS1")==0);
+ assertFalse("H5Lget_name_by_idx ", link_name == null);
+ assertTrue("Link Name ", link_name.compareTo("DS1") == 0);
}
@Test
- public void testH5Lget_name_by_idx_n3() {
+ public void testH5Lget_name_by_idx_n3()
+ {
String link_name = null;
try {
- link_name = H5.H5Lget_name_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT);
+ link_name = H5.H5Lget_name_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_name_by_idx: " + err);
}
- assertFalse("H5Lget_name_by_idx ",link_name==null);
- assertTrue("Link Name ",link_name.compareTo("L1")==0);
+ assertFalse("H5Lget_name_by_idx ", link_name == null);
+ assertTrue("Link Name ", link_name.compareTo("L1") == 0);
}
@Test
- public void testH5Lvisit() {
+ public void testH5Lvisit()
+ {
class idata {
public String link_name = null;
- public int link_type = -1;
- idata(String name, int type) {
+ public int link_type = -1;
+ idata(String name, int type)
+ {
this.link_name = name;
this.link_type = type;
}
@@ -236,7 +265,8 @@ public class TestH5Lbasic {
}
H5L_iterate_opdata_t iter_data = new H5L_iter_data();
class H5L_iter_callback implements H5L_iterate_t {
- public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data)
+ {
idata id = new idata(name, info.type);
((H5L_iter_data)op_data).iterdata.add(id);
return 0;
@@ -250,21 +280,29 @@ public class TestH5Lbasic {
err.printStackTrace();
fail("H5.H5Lvisit: " + err);
}
- assertFalse("H5Lvisit ",((H5L_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Lvisit "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==5);
- assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(0)).link_name,(((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1")==0);
- assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(1)).link_name,(((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DT1")==0);
- assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(2)).link_name,(((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1")==0);
- assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(3)).link_name,(((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1/DS2")==0);
- assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(4)).link_name,(((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("L1")==0);
+ assertFalse("H5Lvisit ", ((H5L_iter_data)iter_data).iterdata.isEmpty());
+ assertTrue("H5Lvisit " + ((H5L_iter_data)iter_data).iterdata.size(),
+ ((H5L_iter_data)iter_data).iterdata.size() == 5);
+ assertTrue("H5Lvisit " + (((H5L_iter_data)iter_data).iterdata.get(0)).link_name,
+ (((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1") == 0);
+ assertTrue("H5Lvisit " + (((H5L_iter_data)iter_data).iterdata.get(1)).link_name,
+ (((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DT1") == 0);
+ assertTrue("H5Lvisit " + (((H5L_iter_data)iter_data).iterdata.get(2)).link_name,
+ (((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1") == 0);
+ assertTrue("H5Lvisit " + (((H5L_iter_data)iter_data).iterdata.get(3)).link_name,
+ (((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1/DS2") == 0);
+ assertTrue("H5Lvisit " + (((H5L_iter_data)iter_data).iterdata.get(4)).link_name,
+ (((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("L1") == 0);
}
@Test
- public void testH5Lvisit_by_name() {
+ public void testH5Lvisit_by_name()
+ {
class idata {
public String link_name = null;
- public int link_type = -1;
- idata(String name, int type) {
+ public int link_type = -1;
+ idata(String name, int type)
+ {
this.link_name = name;
this.link_type = type;
}
@@ -274,7 +312,8 @@ public class TestH5Lbasic {
}
H5L_iterate_opdata_t iter_data = new H5L_iter_data();
class H5L_iter_callback implements H5L_iterate_t {
- public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data)
+ {
idata id = new idata(name, info.type);
((H5L_iter_data)op_data).iterdata.add(id);
return 0;
@@ -282,23 +321,28 @@ public class TestH5Lbasic {
}
H5L_iterate_t iter_cb = new H5L_iter_callback();
try {
- H5.H5Lvisit_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT);
+ H5.H5Lvisit_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb,
+ iter_data, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lvisit_by_name: " + err);
}
- assertFalse("H5Lvisit_by_name ",((H5L_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Lvisit_by_name "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==1);
- assertTrue("H5Lvisit_by_name "+(((H5L_iter_data)iter_data).iterdata.get(0)).link_name,(((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS2")==0);
+ assertFalse("H5Lvisit_by_name ", ((H5L_iter_data)iter_data).iterdata.isEmpty());
+ assertTrue("H5Lvisit_by_name " + ((H5L_iter_data)iter_data).iterdata.size(),
+ ((H5L_iter_data)iter_data).iterdata.size() == 1);
+ assertTrue("H5Lvisit_by_name " + (((H5L_iter_data)iter_data).iterdata.get(0)).link_name,
+ (((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS2") == 0);
}
@Test
- public void testH5Literate() {
+ public void testH5Literate()
+ {
class idata {
public String link_name = null;
- public int link_type = -1;
- idata(String name, int type) {
+ public int link_type = -1;
+ idata(String name, int type)
+ {
this.link_name = name;
this.link_type = type;
}
@@ -308,7 +352,8 @@ public class TestH5Lbasic {
}
H5L_iterate_opdata_t iter_data = new H5L_iter_data();
class H5L_iter_callback implements H5L_iterate_t {
- public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data)
+ {
idata id = new idata(name, info.type);
((H5L_iter_data)op_data).iterdata.add(id);
return 0;
@@ -316,26 +361,35 @@ public class TestH5Lbasic {
}
H5L_iterate_t iter_cb = new H5L_iter_callback();
try {
- H5.H5Literate(H5fid, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, iter_cb, iter_data);
+ H5.H5Literate(H5fid, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, iter_cb,
+ iter_data);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Literate: " + err);
}
- assertFalse("H5Literate ",((H5L_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Literate "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==4);
- assertTrue("H5Literate "+(((H5L_iter_data)iter_data).iterdata.get(0)).link_name,(((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1")==0);
- assertTrue("H5Literate "+(((H5L_iter_data)iter_data).iterdata.get(1)).link_name,(((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DT1")==0);
- assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name,(((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1")==0);
- assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("L1")==0);
+ assertFalse("H5Literate ", ((H5L_iter_data)iter_data).iterdata.isEmpty());
+ assertTrue("H5Literate " + ((H5L_iter_data)iter_data).iterdata.size(),
+ ((H5L_iter_data)iter_data).iterdata.size() == 4);
+ assertTrue("H5Literate " + (((H5L_iter_data)iter_data).iterdata.get(0)).link_name,
+ (((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1") == 0);
+ assertTrue("H5Literate " + (((H5L_iter_data)iter_data).iterdata.get(1)).link_name,
+ (((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DT1") == 0);
+ assertTrue("H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name,
+ (((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1") == 0);
+ assertTrue("H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("L1") ==
+ 0);
}
@Test
- public void testH5Literate_by_name() {
+ public void testH5Literate_by_name()
+ {
class idata {
public String link_name = null;
- public int link_type = -1;
- idata(String name, int type) {
+ public int link_type = -1;
+ idata(String name, int type)
+ {
this.link_name = name;
this.link_type = type;
}
@@ -345,7 +399,8 @@ public class TestH5Lbasic {
}
H5L_iterate_opdata_t iter_data = new H5L_iter_data();
class H5L_iter_callback implements H5L_iterate_t {
- public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data)
+ {
idata id = new idata(name, info.type);
((H5L_iter_data)op_data).iterdata.add(id);
return 0;
@@ -353,15 +408,18 @@ public class TestH5Lbasic {
}
H5L_iterate_t iter_cb = new H5L_iter_callback();
try {
- H5.H5Literate_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT);
+ H5.H5Literate_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L,
+ iter_cb, iter_data, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Literate_by_name: " + err);
}
- assertFalse("H5Literate_by_name ",((H5L_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Literate_by_name "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==1);
- assertTrue("H5Literate_by_name "+((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS2")==0);
+ assertFalse("H5Literate_by_name ", ((H5L_iter_data)iter_data).iterdata.isEmpty());
+ assertTrue("H5Literate_by_name " + ((H5L_iter_data)iter_data).iterdata.size(),
+ ((H5L_iter_data)iter_data).iterdata.size() == 1);
+ assertTrue("H5Literate_by_name " + ((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS2") ==
+ 0);
}
-
}
diff --git a/java/test/TestH5Lcreate.java b/java/test/TestH5Lcreate.java
index 44af2e5..822323e 100644
--- a/java/test/TestH5Lcreate.java
+++ b/java/test/TestH5Lcreate.java
@@ -21,8 +21,8 @@ import java.util.ArrayList;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.callbacks.H5L_iterate_t;
import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t;
+import hdf.hdf5lib.callbacks.H5L_iterate_t;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.structs.H5L_info_t;
@@ -35,21 +35,23 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Lcreate {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_EXTFILE = "h5ex_g_iterateL2.hdf";
- private static final String H5_FILE = "testL.h5";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
- long H5fcpl = HDF5Constants.H5I_INVALID_HID;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did1 = HDF5Constants.H5I_INVALID_HID;
- long H5did2 = HDF5Constants.H5I_INVALID_HID;
- long H5gcpl = HDF5Constants.H5I_INVALID_HID;
- long H5gid = HDF5Constants.H5I_INVALID_HID;
- long[] H5dims = { DIM_X, DIM_Y };
-
- private final void _deleteFile(String filename) {
+ private static final String H5_FILE = "testL.h5";
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
+ long H5fcpl = HDF5Constants.H5I_INVALID_HID;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did1 = HDF5Constants.H5I_INVALID_HID;
+ long H5did2 = HDF5Constants.H5I_INVALID_HID;
+ long H5gcpl = HDF5Constants.H5I_INVALID_HID;
+ long H5gid = HDF5Constants.H5I_INVALID_HID;
+ long[] H5dims = {DIM_X, DIM_Y};
+
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
@@ -62,39 +64,41 @@ public class TestH5Lcreate {
}
}
- private final long _createDataset(long fid, long dsid, String name, long dapl) {
+ private final long _createDataset(long fid, long dsid, String name, long dapl)
+ {
long did = HDF5Constants.H5I_INVALID_HID;
try {
- did = H5.H5Dcreate(fid, name,
- HDF5Constants.H5T_STD_I32BE, dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+ did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Dcreate: " + err);
}
- assertTrue("TestH5L._createDataset: ",did > 0);
+ assertTrue("TestH5L._createDataset: ", did > 0);
return did;
}
- private final long _createGroup(long fid, String name) {
+ private final long _createGroup(long fid, String name)
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
try {
H5gcpl = HDF5Constants.H5P_DEFAULT;
- gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
- H5gcpl, HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, H5gcpl, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Gcreate: " + err);
}
- assertTrue("TestH5L._createGroup: ",gid > 0);
+ assertTrue("TestH5L._createGroup: ", gid > 0);
return gid;
}
- private final void _createHardLink(long fid, long cid, String curname, long did, String dstname, long lcpl, long lapl) {
+ private final void _createHardLink(long fid, long cid, String curname, long did, String dstname,
+ long lcpl, long lapl)
+ {
boolean link_exists = false;
try {
H5.H5Lcreate_hard(cid, curname, did, dstname, lcpl, lapl);
@@ -108,7 +112,9 @@ public class TestH5Lcreate {
assertTrue("TestH5L._createHardLink ", link_exists);
}
- private final void _createSoftLink(long fid, String curname, long did, String dstname, long lcpl, long lapl) {
+ private final void _createSoftLink(long fid, String curname, long did, String dstname, long lcpl,
+ long lapl)
+ {
boolean link_exists = false;
try {
H5.H5Lcreate_soft(curname, did, dstname, lcpl, lapl);
@@ -122,7 +128,9 @@ public class TestH5Lcreate {
assertTrue("TestH5L._createSoftLink ", link_exists);
}
- private final void _createExternalLink(long fid, String ext_filename, String curname, long did, String dstname, long lcpl, long lapl) {
+ private final void _createExternalLink(long fid, String ext_filename, String curname, long did,
+ String dstname, long lcpl, long lapl)
+ {
boolean link_exists = false;
try {
H5.H5Lcreate_external(ext_filename, curname, did, dstname, lcpl, lapl);
@@ -137,111 +145,149 @@ public class TestH5Lcreate {
}
@Before
- public void createH5file()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
H5fcpl = H5.H5Pcreate(HDF5Constants.H5P_FILE_CREATE);
- H5.H5Pset_link_creation_order(H5fcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED);
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- H5fcpl, HDF5Constants.H5P_DEFAULT);
+ H5.H5Pset_link_creation_order(H5fcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED +
+ HDF5Constants.H5P_CRT_ORDER_INDEXED);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, H5fcpl, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5L.createH5file: " + err);
}
- assertTrue("TestH5L.createH5file: H5.H5Fcreate: ",H5fid > 0);
+ assertTrue("TestH5L.createH5file: H5.H5Fcreate: ", H5fid > 0);
try {
H5dsid = H5.H5Screate_simple(2, H5dims, null);
H5did1 = _createDataset(H5fid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT);
- H5gid = _createGroup(H5fid, "/G1");
+ H5gid = _createGroup(H5fid, "/G1");
H5did2 = _createDataset(H5gid, H5dsid, "DS2", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5L.createH5objs: " + err);
}
- assertTrue("TestH5L.createH5file: H5.H5Screate_simple: ",H5dsid > 0);
- assertTrue("TestH5L.createH5file: H5.H5Gcreate: ",H5gid > 0);
+ assertTrue("TestH5L.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
+ assertTrue("TestH5L.createH5file: H5.H5Gcreate: ", H5gid > 0);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5gid > 0)
- try {H5.H5Gclose(H5gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(H5gid);
+ }
+ catch (Exception ex) {
+ }
if (H5gcpl > 0)
- try {H5.H5Pclose(H5gcpl);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(H5gcpl);
+ }
+ catch (Exception ex) {
+ }
if (H5did2 > 0)
- try {H5.H5Dclose(H5did2);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did2);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5did1 > 0)
- try {H5.H5Dclose(H5did1);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did1);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
if (H5fcpl > 0)
- try {H5.H5Pclose(H5fcpl);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(H5fcpl);
+ }
+ catch (Exception ex) {
+ }
_deleteFile(H5_FILE);
System.out.println();
}
@Test
- public void testH5Lget_info_by_idx_n0_create() {
+ public void testH5Lget_info_by_idx_n0_create()
+ {
H5L_info_t link_info = null;
try {
int order = H5.H5Pget_link_creation_order(H5fcpl);
- assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED);
+ assertTrue("creation order :" + order,
+ order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_info_by_idx_n0_create:H5Pget_link_creation_order " + err);
}
try {
- link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_info_by_idx: " + err);
}
- assertFalse("H5Lget_info_by_idx ", link_info==null);
- assertTrue("H5Lget_info_by_idx link type", link_info.type==HDF5Constants.H5L_TYPE_HARD);
+ assertFalse("H5Lget_info_by_idx ", link_info == null);
+ assertTrue("H5Lget_info_by_idx link type", link_info.type == HDF5Constants.H5L_TYPE_HARD);
}
@Test
- public void testH5Lget_info_by_idx_n1_create() {
+ public void testH5Lget_info_by_idx_n1_create()
+ {
H5L_info_t link_info = null;
try {
int order = H5.H5Pget_link_creation_order(H5fcpl);
- assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED);
+ assertTrue("creation order :" + order,
+ order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_info_by_idx_n1_create:H5Pget_link_creation_order " + err);
}
try {
- link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 1, HDF5Constants.H5P_DEFAULT);
+ link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 1, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_info_by_idx: " + err);
}
- assertFalse("H5Lget_info_by_idx ", link_info==null);
- assertTrue("H5Lget_info_by_idx link type", link_info.type==HDF5Constants.H5L_TYPE_HARD);
+ assertFalse("H5Lget_info_by_idx ", link_info == null);
+ assertTrue("H5Lget_info_by_idx link type", link_info.type == HDF5Constants.H5L_TYPE_HARD);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lcreate_hard_cur_not_exists() throws Throwable {
+ public void testH5Lcreate_hard_cur_not_exists() throws Throwable
+ {
H5.H5Lcreate_hard(H5fid, "None", H5fid, "DS1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Lcreate_hard() {
+ public void testH5Lcreate_hard()
+ {
try {
- H5.H5Lcreate_hard(H5fid, "DS1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5.H5Lcreate_hard(H5fid, "DS1", H5fid, "L1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
boolean link_exists = H5.H5Lexists(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
assertTrue("testH5Lcreate_hard:H5Lexists ", link_exists);
@@ -253,14 +299,19 @@ public class TestH5Lcreate {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lcreate_hard_dst_link_exists() throws Throwable {
- _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- H5.H5Lcreate_hard(H5fid, "L1", H5fid, "/G1/DS2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ public void testH5Lcreate_hard_dst_link_exists() throws Throwable
+ {
+ _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ H5.H5Lcreate_hard(H5fid, "L1", H5fid, "/G1/DS2", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Ldelete_hard_link() {
- _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ public void testH5Ldelete_hard_link()
+ {
+ _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
try {
H5.H5Ldelete(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
@@ -274,7 +325,8 @@ public class TestH5Lcreate {
}
@Test
- public void testH5Lcreate_soft() {
+ public void testH5Lcreate_soft()
+ {
try {
H5.H5Lcreate_soft("DS1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
@@ -288,13 +340,15 @@ public class TestH5Lcreate {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lcreate_soft_dst_link_exists() throws Throwable {
+ public void testH5Lcreate_soft_dst_link_exists() throws Throwable
+ {
_createSoftLink(H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Lcreate_soft("L1", H5fid, "/G1/DS2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Ldelete_soft_link() {
+ public void testH5Ldelete_soft_link()
+ {
_createSoftLink(H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
try {
H5.H5Ldelete(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
@@ -309,7 +363,8 @@ public class TestH5Lcreate {
}
@Test
- public void testH5Lget_info_softlink() {
+ public void testH5Lget_info_softlink()
+ {
H5L_info_t link_info = null;
_createSoftLink(H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
try {
@@ -319,15 +374,16 @@ public class TestH5Lcreate {
err.printStackTrace();
fail("H5.H5Lget_info: " + err);
}
- assertFalse("H5Lget_info", link_info==null);
- assertTrue("H5Lget_info link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT);
+ assertFalse("H5Lget_info", link_info == null);
+ assertTrue("H5Lget_info link type", link_info.type == HDF5Constants.H5L_TYPE_SOFT);
assertTrue("Link Value Size", link_info.val_size > 0);
}
@Test
- public void testH5Lget_value_soft() {
+ public void testH5Lget_value_soft()
+ {
String[] link_value = {null, null};
- int link_type = -1;
+ int link_type = -1;
_createSoftLink(H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
try {
@@ -338,12 +394,13 @@ public class TestH5Lcreate {
fail("H5.H5Lget_value: " + err);
}
assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_SOFT);
- assertFalse("H5Lget_value ", link_value[0]==null);
- assertTrue("Link Value ", link_value[0].compareTo("/G1/DS2")==0);
+ assertFalse("H5Lget_value ", link_value[0] == null);
+ assertTrue("Link Value ", link_value[0].compareTo("/G1/DS2") == 0);
}
@Test
- public void testH5Lcreate_soft_dangle() {
+ public void testH5Lcreate_soft_dangle()
+ {
try {
H5.H5Lcreate_soft("DS3", H5fid, "L2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
@@ -357,7 +414,8 @@ public class TestH5Lcreate {
}
@Test
- public void testH5Ldelete_soft_link_dangle() {
+ public void testH5Ldelete_soft_link_dangle()
+ {
_createSoftLink(H5fid, "DS3", H5fid, "L2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
try {
H5.H5Ldelete(H5fid, "L2", HDF5Constants.H5P_DEFAULT);
@@ -372,7 +430,8 @@ public class TestH5Lcreate {
}
@Test
- public void testH5Lget_info_softlink_dangle() {
+ public void testH5Lget_info_softlink_dangle()
+ {
H5L_info_t link_info = null;
_createSoftLink(H5fid, "DS3", H5fid, "L2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
try {
@@ -382,15 +441,16 @@ public class TestH5Lcreate {
err.printStackTrace();
fail("H5.H5Lget_info: " + err);
}
- assertFalse("H5Lget_info", link_info==null);
- assertTrue("H5Lget_info link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT);
+ assertFalse("H5Lget_info", link_info == null);
+ assertTrue("H5Lget_info link type", link_info.type == HDF5Constants.H5L_TYPE_SOFT);
assertTrue("Link Value Size", link_info.val_size > 0);
}
@Test
- public void testH5Lget_value_dangle() {
- String[] link_value = {null,null};
- int link_type = -1;
+ public void testH5Lget_value_dangle()
+ {
+ String[] link_value = {null, null};
+ int link_type = -1;
_createSoftLink(H5fid, "DS3", H5fid, "L2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
try {
@@ -401,14 +461,16 @@ public class TestH5Lcreate {
fail("H5.H5Lget_value: " + err);
}
assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_SOFT);
- assertFalse("H5Lget_value ", link_value[0]==null);
- assertTrue("Link Value ", link_value[0].compareTo("DS3")==0);
+ assertFalse("H5Lget_value ", link_value[0] == null);
+ assertTrue("Link Value ", link_value[0].compareTo("DS3") == 0);
}
@Test
- public void testH5Lcreate_external() {
+ public void testH5Lcreate_external()
+ {
try {
- H5.H5Lcreate_external(H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5.H5Lcreate_external(H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
boolean link_exists = H5.H5Lexists(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
assertTrue("testH5Lcreate_external:H5Lexists ", link_exists);
@@ -420,9 +482,11 @@ public class TestH5Lcreate {
}
@Test
- public void testH5Lget_info_externallink() {
+ public void testH5Lget_info_externallink()
+ {
H5L_info_t link_info = null;
- _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
try {
link_info = H5.H5Lget_info(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
}
@@ -430,17 +494,19 @@ public class TestH5Lcreate {
err.printStackTrace();
fail("H5.H5Lget_info: " + err);
}
- assertFalse("H5Lget_info", link_info==null);
- assertTrue("H5Lget_info link type", link_info.type==HDF5Constants.H5L_TYPE_EXTERNAL);
+ assertFalse("H5Lget_info", link_info == null);
+ assertTrue("H5Lget_info link type", link_info.type == HDF5Constants.H5L_TYPE_EXTERNAL);
assertTrue("Link Value Size", link_info.val_size > 0);
}
@Test
- public void testH5Lget_value_external(){
- String[] link_value = {null,null};
- int link_type = -1;
+ public void testH5Lget_value_external()
+ {
+ String[] link_value = {null, null};
+ int link_type = -1;
- _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
try {
link_type = H5.H5Lget_value(H5fid, "L1", link_value, HDF5Constants.H5P_DEFAULT);
}
@@ -449,18 +515,20 @@ public class TestH5Lcreate {
fail("H5.H5Lget_value: " + err);
}
assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_EXTERNAL);
- assertFalse("H5Lget_value ", link_value[0]==null);
- assertFalse("H5Lget_value ", link_value[1]==null);
- assertTrue("Link Value ", link_value[0].compareTo("DT1")==0);
+ assertFalse("H5Lget_value ", link_value[0] == null);
+ assertFalse("H5Lget_value ", link_value[1] == null);
+ assertTrue("Link Value ", link_value[0].compareTo("DT1") == 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lcopy_cur_not_exists() throws Throwable {
+ public void testH5Lcopy_cur_not_exists() throws Throwable
+ {
H5.H5Lcopy(H5fid, "None", H5fid, "DS1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Lcopy() {
+ public void testH5Lcopy()
+ {
try {
H5.H5Lcopy(H5fid, "DS1", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
@@ -474,18 +542,22 @@ public class TestH5Lcreate {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lcopy_dst_link_exists() throws Throwable {
- _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ public void testH5Lcopy_dst_link_exists() throws Throwable
+ {
+ _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Lcopy(H5fid, "CPY1", H5fid, "/G1/DS2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lmove_cur_not_exists() throws Throwable {
+ public void testH5Lmove_cur_not_exists() throws Throwable
+ {
H5.H5Lmove(H5fid, "None", H5fid, "DS1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Lmove() {
+ public void testH5Lmove()
+ {
try {
H5.H5Lmove(H5fid, "DS1", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
@@ -501,60 +573,72 @@ public class TestH5Lcreate {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lmove_dst_link_exists() throws Throwable {
- _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ public void testH5Lmove_dst_link_exists() throws Throwable
+ {
+ _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Lmove(H5fid, "CPY1", H5fid, "/G1/DS2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_value_by_idx_not_exist_name() throws Throwable {
- String[] link_value = {null,null};
- H5.H5Lget_value_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, link_value, HDF5Constants.H5P_DEFAULT);
+ public void testH5Lget_value_by_idx_not_exist_name() throws Throwable
+ {
+ String[] link_value = {null, null};
+ H5.H5Lget_value_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0,
+ link_value, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_value_by_idx_not_exist_create() throws Throwable {
- String[] link_value = {null,null};
- H5.H5Lget_value_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, link_value, HDF5Constants.H5P_DEFAULT);
+ public void testH5Lget_value_by_idx_not_exist_create() throws Throwable
+ {
+ String[] link_value = {null, null};
+ H5.H5Lget_value_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0,
+ link_value, HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Lget_value_by_idx_n2_name() {
+ public void testH5Lget_value_by_idx_n2_name()
+ {
H5L_info_t link_info = null;
- String[] link_value = {null,null};
- int link_type = -1;
+ String[] link_value = {null, null};
+ int link_type = -1;
_createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
try {
- link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
+ link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_info_by_idx: " + err);
}
- assertFalse("testH5Lget_value_by_idx_n2 ",link_info==null);
- assertTrue("testH5Lget_value_by_idx_n2 link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT);
+ assertFalse("testH5Lget_value_by_idx_n2 ", link_info == null);
+ assertTrue("testH5Lget_value_by_idx_n2 link type", link_info.type == HDF5Constants.H5L_TYPE_SOFT);
try {
- link_type = H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, link_value, HDF5Constants.H5P_DEFAULT);
+ link_type =
+ H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2,
+ link_value, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_value_by_idx: " + err);
}
assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_SOFT);
- assertFalse("testH5Lget_value_by_idx_n2 ", link_value[0]==null);
- assertTrue("testH5Lget_value_by_idx_n2 Link Value ", link_value[0].compareTo("/G1/DS2")==0);
+ assertFalse("testH5Lget_value_by_idx_n2 ", link_value[0] == null);
+ assertTrue("testH5Lget_value_by_idx_n2 Link Value ", link_value[0].compareTo("/G1/DS2") == 0);
}
@Test
- public void testH5Lget_value_by_idx_n2_create() {
+ public void testH5Lget_value_by_idx_n2_create()
+ {
H5L_info_t link_info = null;
- String[] link_value = {null,null};
- int link_type = -1;
+ String[] link_value = {null, null};
+ int link_type = -1;
try {
int order = H5.H5Pget_link_creation_order(H5fcpl);
- assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED);
+ assertTrue("creation order :" + order,
+ order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED);
}
catch (Throwable err) {
err.printStackTrace();
@@ -562,116 +646,139 @@ public class TestH5Lcreate {
}
_createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
try {
- link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
+ link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_info_by_idx: " + err);
}
- assertFalse("testH5Lget_value_by_idx_n2 ", link_info==null);
- assertTrue("testH5Lget_value_by_idx_n2 link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT);
+ assertFalse("testH5Lget_value_by_idx_n2 ", link_info == null);
+ assertTrue("testH5Lget_value_by_idx_n2 link type", link_info.type == HDF5Constants.H5L_TYPE_SOFT);
try {
- link_type = H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, link_value, HDF5Constants.H5P_DEFAULT);
+ link_type =
+ H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 2, link_value, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_value_by_idx: " + err);
}
assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_SOFT);
- assertFalse("testH5Lget_value_by_idx_n2 ", link_value[0]==null);
- assertTrue("testH5Lget_value_by_idx_n2 Link Value ", link_value[0].compareTo("/G1/DS2")==0);
+ assertFalse("testH5Lget_value_by_idx_n2 ", link_value[0] == null);
+ assertTrue("testH5Lget_value_by_idx_n2 Link Value ", link_value[0].compareTo("/G1/DS2") == 0);
}
@Test
- public void testH5Lget_value_by_idx_external_name() {
+ public void testH5Lget_value_by_idx_external_name()
+ {
H5L_info_t link_info = null;
- String[] link_value = {null,null};
- int link_type = -1;
+ String[] link_value = {null, null};
+ int link_type = -1;
- _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
try {
- link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
+ link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_info_by_idx: " + err);
}
- assertFalse("testH5Lget_value_by_idx_ext ", link_info==null);
- assertTrue("testH5Lget_value_by_idx_ext link type "+link_info.type, link_info.type==HDF5Constants.H5L_TYPE_EXTERNAL);
+ assertFalse("testH5Lget_value_by_idx_ext ", link_info == null);
+ assertTrue("testH5Lget_value_by_idx_ext link type " + link_info.type,
+ link_info.type == HDF5Constants.H5L_TYPE_EXTERNAL);
try {
- link_type = H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, link_value, HDF5Constants.H5P_DEFAULT);
+ link_type =
+ H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2,
+ link_value, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_value_by_idx: " + err);
}
assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_EXTERNAL);
- assertFalse("testH5Lget_value_by_idx_ext ", link_value[0]==null);
- assertFalse("testH5Lget_value_by_idx_ext ", link_value[1]==null);
- assertTrue("testH5Lget_value_by_idx_ext Link Value ", link_value[0].compareTo("DT1")==0);
+ assertFalse("testH5Lget_value_by_idx_ext ", link_value[0] == null);
+ assertFalse("testH5Lget_value_by_idx_ext ", link_value[1] == null);
+ assertTrue("testH5Lget_value_by_idx_ext Link Value ", link_value[0].compareTo("DT1") == 0);
}
@Test
- public void testH5Lget_value_by_idx_external_create() {
+ public void testH5Lget_value_by_idx_external_create()
+ {
H5L_info_t link_info = null;
- String[] link_value = {null,null};
- int link_type = -1;
+ String[] link_value = {null, null};
+ int link_type = -1;
- _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
try {
- link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
+ link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_info_by_idx: " + err);
}
- assertFalse("testH5Lget_value_by_idx_ext ", link_info==null);
- assertTrue("testH5Lget_value_by_idx_ext link type "+link_info.type, link_info.type==HDF5Constants.H5L_TYPE_EXTERNAL);
+ assertFalse("testH5Lget_value_by_idx_ext ", link_info == null);
+ assertTrue("testH5Lget_value_by_idx_ext link type " + link_info.type,
+ link_info.type == HDF5Constants.H5L_TYPE_EXTERNAL);
try {
- link_type = H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, link_value, HDF5Constants.H5P_DEFAULT);
+ link_type =
+ H5.H5Lget_value_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 2, link_value, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_value_by_idx: " + err);
}
assertTrue("Link Type", link_type == HDF5Constants.H5L_TYPE_EXTERNAL);
- assertFalse("testH5Lget_value_by_idx_ext ", link_value[0]==null);
- assertFalse("testH5Lget_value_by_idx_ext ", link_value[1]==null);
- assertTrue("testH5Lget_value_by_idx_ext Link Value ", link_value[0].compareTo("DT1")==0);
+ assertFalse("testH5Lget_value_by_idx_ext ", link_value[0] == null);
+ assertFalse("testH5Lget_value_by_idx_ext ", link_value[1] == null);
+ assertTrue("testH5Lget_value_by_idx_ext Link Value ", link_value[0].compareTo("DT1") == 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Ldelete_by_idx_not_exist_name() throws Throwable {
- H5.H5Ldelete_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ public void testH5Ldelete_by_idx_not_exist_name() throws Throwable
+ {
+ H5.H5Ldelete_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0,
+ HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Ldelete_by_idx_not_exist_create() throws Throwable {
- H5.H5Ldelete_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ public void testH5Ldelete_by_idx_not_exist_create() throws Throwable
+ {
+ H5.H5Ldelete_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0,
+ HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Ldelete_by_idx_n2_name() {
+ public void testH5Ldelete_by_idx_n2_name()
+ {
H5L_info_t link_info = null;
_createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
try {
- link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
+ link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_info_by_idx: " + err);
}
- assertFalse("testH5Ldelete_by_idx_n2 ", link_info==null);
- assertTrue("testH5Ldelete_by_idx_n2 link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT);
+ assertFalse("testH5Ldelete_by_idx_n2 ", link_info == null);
+ assertTrue("testH5Ldelete_by_idx_n2 link type", link_info.type == HDF5Constants.H5L_TYPE_SOFT);
try {
- H5.H5Ldelete_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
+ H5.H5Ldelete_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Ldelete_by_idx: " + err);
}
try {
- link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
+ link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
}
catch (HDF5LibraryException err) {
link_info = null;
@@ -680,31 +787,35 @@ public class TestH5Lcreate {
err.printStackTrace();
fail("H5.H5Ldelete_by_idx: " + err);
}
- assertTrue("testH5Ldelete_by_idx_n2 ",link_info==null);
+ assertTrue("testH5Ldelete_by_idx_n2 ", link_info == null);
}
@Test
- public void testH5Ldelete_by_idx_n2_create() {
+ public void testH5Ldelete_by_idx_n2_create()
+ {
H5L_info_t link_info = null;
_createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
try {
- link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
+ link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lget_info_by_idx: " + err);
}
- assertFalse("testH5Ldelete_by_idx_n2 ", link_info==null);
- assertTrue("testH5Ldelete_by_idx_n2 link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT);
+ assertFalse("testH5Ldelete_by_idx_n2 ", link_info == null);
+ assertTrue("testH5Ldelete_by_idx_n2 link type", link_info.type == HDF5Constants.H5L_TYPE_SOFT);
try {
- H5.H5Ldelete_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
+ H5.H5Ldelete_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Ldelete_by_idx: " + err);
}
try {
- link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
+ link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 2, HDF5Constants.H5P_DEFAULT);
}
catch (HDF5LibraryException err) {
link_info = null;
@@ -713,28 +824,33 @@ public class TestH5Lcreate {
err.printStackTrace();
fail("H5.H5Ldelete_by_idx: " + err);
}
- assertTrue("testH5Ldelete_by_idx_n2 ",link_info==null);
+ assertTrue("testH5Ldelete_by_idx_n2 ", link_info == null);
}
@Test
- public void testH5Lvisit_create() {
+ public void testH5Lvisit_create()
+ {
try {
int order = H5.H5Pget_link_creation_order(H5fcpl);
- assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED);
+ assertTrue("creation order :" + order,
+ order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lvisit_create: H5Pget_link_creation_order " + err);
}
- _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
_createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
class idata {
public String link_name = null;
- public int link_type = -1;
- idata(String name, int type) {
+ public int link_type = -1;
+ idata(String name, int type)
+ {
this.link_name = name;
this.link_type = type;
}
@@ -744,7 +860,8 @@ public class TestH5Lcreate {
}
H5L_iterate_opdata_t iter_data = new H5L_iter_data();
class H5L_iter_callback implements H5L_iterate_t {
- public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data)
+ {
idata id = new idata(name, info.type);
((H5L_iter_data)op_data).iterdata.add(id);
return 0;
@@ -752,41 +869,60 @@ public class TestH5Lcreate {
}
H5L_iterate_t iter_cb = new H5L_iter_callback();
try {
- H5.H5Lvisit(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, iter_cb, iter_data);
+ H5.H5Lvisit(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, iter_cb,
+ iter_data);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Lvisit: " + err);
}
- assertFalse("H5Lvisit ",((H5L_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Lvisit "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==6);
- assertTrue("H5Lvisit "+((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1")==0);
- assertTrue("H5Lvisit "+((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("G1")==0);
- assertTrue("H5Lvisit "+((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1/DS2")==0);
- assertTrue("H5Lvisit "+((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("CPY1")==0);
- assertTrue("H5Lvisit "+((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("LE")==0);
- assertTrue("H5Lvisit "+((idata)((H5L_iter_data)iter_data).iterdata.get(5)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(5)).link_name.compareToIgnoreCase("LS")==0);
+ assertFalse("H5Lvisit ", ((H5L_iter_data)iter_data).iterdata.isEmpty());
+ assertTrue("H5Lvisit " + ((H5L_iter_data)iter_data).iterdata.size(),
+ ((H5L_iter_data)iter_data).iterdata.size() == 6);
+ assertTrue("H5Lvisit " + ((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1") ==
+ 0);
+ assertTrue("H5Lvisit " + ((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("G1") ==
+ 0);
+ assertTrue(
+ "H5Lvisit " + ((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1/DS2") == 0);
+ assertTrue(
+ "H5Lvisit " + ((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("CPY1") == 0);
+ assertTrue("H5Lvisit " + ((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("LE") ==
+ 0);
+ assertTrue("H5Lvisit " + ((idata)((H5L_iter_data)iter_data).iterdata.get(5)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(5)).link_name.compareToIgnoreCase("LS") ==
+ 0);
}
@Test
- public void testH5Literate_create() {
+ public void testH5Literate_create()
+ {
try {
int order = H5.H5Pget_link_creation_order(H5fcpl);
- assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED);
+ assertTrue("creation order :" + order,
+ order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Literate_create: H5Pget_link_creation_order " + err);
}
- _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
_createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
class idata {
public String link_name = null;
- public int link_type = -1;
- idata(String name, int type) {
+ public int link_type = -1;
+ idata(String name, int type)
+ {
this.link_name = name;
this.link_type = type;
}
@@ -796,7 +932,8 @@ public class TestH5Lcreate {
}
H5L_iterate_opdata_t iter_data = new H5L_iter_data();
class H5L_iter_callback implements H5L_iterate_t {
- public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data)
+ {
idata id = new idata(name, info.type);
((H5L_iter_data)op_data).iterdata.add(id);
return 0;
@@ -804,19 +941,30 @@ public class TestH5Lcreate {
}
H5L_iterate_t iter_cb = new H5L_iter_callback();
try {
- H5.H5Literate(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, iter_cb, iter_data);
+ H5.H5Literate(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, iter_cb,
+ iter_data);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Literate: " + err);
}
- assertFalse("H5Literate ",((H5L_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Literate "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==5);
- assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1")==0);
- assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("G1")==0);
- assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("CPY1")==0);
- assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("LE")==0);
- assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("LS")==0);
+ assertFalse("H5Literate ", ((H5L_iter_data)iter_data).iterdata.isEmpty());
+ assertTrue("H5Literate " + ((H5L_iter_data)iter_data).iterdata.size(),
+ ((H5L_iter_data)iter_data).iterdata.size() == 5);
+ assertTrue("H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1") ==
+ 0);
+ assertTrue("H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("G1") ==
+ 0);
+ assertTrue(
+ "H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("CPY1") == 0);
+ assertTrue("H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("LE") ==
+ 0);
+ assertTrue("H5Literate " + ((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name,
+ ((idata)((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("LS") ==
+ 0);
}
-
}
diff --git a/java/test/TestH5Lparams.java b/java/test/TestH5Lparams.java
index 30ee242..78de663 100644
--- a/java/test/TestH5Lparams.java
+++ b/java/test/TestH5Lparams.java
@@ -13,6 +13,7 @@
package test;
import static org.junit.Assert.assertTrue;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
@@ -23,206 +24,246 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Lparams {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
@Before
- public void checkOpenIDs() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void checkOpenIDs()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@After
- public void nextTestName() {
+ public void nextTestName()
+ {
System.out.println();
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_value_invalid() throws Throwable {
+ public void testH5Lget_value_invalid() throws Throwable
+ {
H5.H5Lget_value(-1, "Bogus", null, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Lget_value_null() throws Throwable {
+ public void testH5Lget_value_null() throws Throwable
+ {
H5.H5Lget_value(-1, null, null, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lexists_invalid() throws Throwable {
+ public void testH5Lexists_invalid() throws Throwable
+ {
H5.H5Lexists(-1, "Bogus", -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Lexists_null() throws Throwable {
+ public void testH5Lexists_null() throws Throwable
+ {
H5.H5Lexists(-1, null, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_info_invalid() throws Throwable {
+ public void testH5Lget_info_invalid() throws Throwable
+ {
H5.H5Lget_info(-1, "Bogus", -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Lget_info_null() throws Throwable {
+ public void testH5Lget_info_null() throws Throwable
+ {
H5.H5Lget_info(-1, null, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_info_by_idx_invalid() throws Throwable {
+ public void testH5Lget_info_by_idx_invalid() throws Throwable
+ {
H5.H5Lget_info_by_idx(-1, "Bogus", -1, -1, -1L, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Lget_info_by_idx_null() throws Throwable {
+ public void testH5Lget_info_by_idx_null() throws Throwable
+ {
H5.H5Lget_info_by_idx(-1, null, 0, 0, 0L, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_name_by_idx_invalid() throws Throwable {
+ public void testH5Lget_name_by_idx_invalid() throws Throwable
+ {
H5.H5Lget_name_by_idx(-1, "Bogus", -1, -1, -1L, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Lget_name_by_idx_null() throws Throwable {
+ public void testH5Lget_name_by_idx_null() throws Throwable
+ {
H5.H5Lget_name_by_idx(-1, null, 0, 0, 0L, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lcreate_hard_invalid() throws Throwable {
+ public void testH5Lcreate_hard_invalid() throws Throwable
+ {
H5.H5Lcreate_hard(-1, "Bogus", -1, "Bogus", -1, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Lcreate_hard_null_current() throws Throwable {
+ public void testH5Lcreate_hard_null_current() throws Throwable
+ {
H5.H5Lcreate_hard(-1, null, 0, "Bogus", 0, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Lcreate_hard_null_dest() throws Throwable {
+ public void testH5Lcreate_hard_null_dest() throws Throwable
+ {
H5.H5Lcreate_hard(-1, "Bogus", 0, null, 0, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Ldelete_invalid() throws Throwable {
+ public void testH5Ldelete_invalid() throws Throwable
+ {
H5.H5Ldelete(-1, "Bogus", -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Ldelete_null() throws Throwable {
+ public void testH5Ldelete_null() throws Throwable
+ {
H5.H5Ldelete(-1, null, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lcreate_soft_invalid() throws Throwable {
- H5.H5Lcreate_soft( "Bogus", -1, "Bogus", -1, -1);
+ public void testH5Lcreate_soft_invalid() throws Throwable
+ {
+ H5.H5Lcreate_soft("Bogus", -1, "Bogus", -1, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Lcreate_soft_null_current() throws Throwable {
+ public void testH5Lcreate_soft_null_current() throws Throwable
+ {
H5.H5Lcreate_soft(null, 0, "Bogus", 0, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Lcreate_soft_null_dest() throws Throwable {
+ public void testH5Lcreate_soft_null_dest() throws Throwable
+ {
H5.H5Lcreate_soft("Bogus", 0, null, 0, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lcreate_external_invalid() throws Throwable {
+ public void testH5Lcreate_external_invalid() throws Throwable
+ {
H5.H5Lcreate_external("PathToFile", "Bogus", -1, "Bogus", -1, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Lcreate_external_null_file() throws Throwable {
+ public void testH5Lcreate_external_null_file() throws Throwable
+ {
H5.H5Lcreate_external(null, "Bogus", 0, "Bogus", 0, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Lcreate_external_null_current() throws Throwable {
+ public void testH5Lcreate_external_null_current() throws Throwable
+ {
H5.H5Lcreate_external("PathToFile", null, 0, "Bogus", 0, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Lcreate_external_null_dest() throws Throwable {
+ public void testH5Lcreate_external_null_dest() throws Throwable
+ {
H5.H5Lcreate_external("PathToFile", "Bogus", 0, null, 0, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lcopy_invalid() throws Throwable {
+ public void testH5Lcopy_invalid() throws Throwable
+ {
H5.H5Lcopy(-1, "Bogus", -1, "Bogus", -1, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Lcopy_null_current() throws Throwable {
+ public void testH5Lcopy_null_current() throws Throwable
+ {
H5.H5Lcopy(-1, null, 0, "Bogus", 0, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Lcopy_null_dest() throws Throwable {
+ public void testH5Lcopy_null_dest() throws Throwable
+ {
H5.H5Lcopy(-1, "Bogus", 0, null, 0, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lmove_invalid() throws Throwable {
+ public void testH5Lmove_invalid() throws Throwable
+ {
H5.H5Lmove(-1, "Bogus", -1, "Bogus", -1, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Lmove_null_current() throws Throwable {
+ public void testH5Lmove_null_current() throws Throwable
+ {
H5.H5Lmove(-1, null, 0, "Bogus", 0, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Lmove_null_dest() throws Throwable {
+ public void testH5Lmove_null_dest() throws Throwable
+ {
H5.H5Lmove(-1, "Bogus", 0, null, 0, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Lget_value_by_idx_invalid() throws Throwable {
+ public void testH5Lget_value_by_idx_invalid() throws Throwable
+ {
H5.H5Lget_value_by_idx(-1, "Bogus", -1, -1, -1L, null, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Lget_value_by_idx_null() throws Throwable {
+ public void testH5Lget_value_by_idx_null() throws Throwable
+ {
H5.H5Lget_value_by_idx(-1, null, 0, 0, 0L, null, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Ldelete_by_idx_invalid() throws Throwable {
+ public void testH5Ldelete_by_idx_invalid() throws Throwable
+ {
H5.H5Ldelete_by_idx(-1, "Bogus", -1, -1, -1L, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Ldelete_by_idx_null() throws Throwable {
+ public void testH5Ldelete_by_idx_null() throws Throwable
+ {
H5.H5Ldelete_by_idx(-1, null, 0, 0, 0L, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Lvisit_null() throws Throwable {
+ public void testH5Lvisit_null() throws Throwable
+ {
H5.H5Lvisit(-1, -1, -1, null, null);
}
@Test(expected = NullPointerException.class)
- public void testH5Lvisit_by_name_nullname() throws Throwable {
+ public void testH5Lvisit_by_name_nullname() throws Throwable
+ {
H5.H5Lvisit_by_name(-1, null, -1, -1, null, null, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Lvisit_by_name_null() throws Throwable {
+ public void testH5Lvisit_by_name_null() throws Throwable
+ {
H5.H5Lvisit_by_name(-1, "Bogus", -1, -1, null, null, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Literate_null() throws Throwable {
+ public void testH5Literate_null() throws Throwable
+ {
H5.H5Literate(-1, -1, -1, -1, null, null);
}
@Test(expected = NullPointerException.class)
- public void testH5Literate_by_name_nullname() throws Throwable {
+ public void testH5Literate_by_name_nullname() throws Throwable
+ {
H5.H5Literate_by_name(-1, null, -1, -1, -1, null, null, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Literate_by_name_null() throws Throwable {
+ public void testH5Literate_by_name_null() throws Throwable
+ {
H5.H5Literate_by_name(-1, "Bogus", -1, -1, -1, null, null, -1);
}
-
}
diff --git a/java/test/TestH5Obasic.java b/java/test/TestH5Obasic.java
index 350b7aa..cac2e6a 100644
--- a/java/test/TestH5Obasic.java
+++ b/java/test/TestH5Obasic.java
@@ -20,13 +20,13 @@ import java.util.ArrayList;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.callbacks.H5O_iterate_t;
import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t;
+import hdf.hdf5lib.callbacks.H5O_iterate_t;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
+import hdf.hdf5lib.structs.H5O_hdr_info_t;
import hdf.hdf5lib.structs.H5O_info_t;
import hdf.hdf5lib.structs.H5O_native_info_t;
import hdf.hdf5lib.structs.H5O_token_t;
-import hdf.hdf5lib.structs.H5O_hdr_info_t;
import hdf.hdf5lib.structs.H5_ih_info_t;
import org.junit.After;
@@ -36,21 +36,21 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Obasic {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_FILE = "h5ex_g_iterateO1.hdf";
private static H5O_token_t H5la_ds1 = null;
- private static H5O_token_t H5la_l1 = null;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
+ private static H5O_token_t H5la_l1 = null;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
@Before
- public void openH5file()
- throws HDF5LibraryException, NullPointerException {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void openH5file() throws HDF5LibraryException, NullPointerException
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
- H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY,
- HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -59,103 +59,136 @@ public class TestH5Obasic {
}
@After
- public void closeH5file() throws HDF5LibraryException {
+ public void closeH5file() throws HDF5LibraryException
+ {
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
System.out.println();
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oopen_not_exists() throws Throwable {
+ public void testH5Oopen_not_exists() throws Throwable
+ {
long oid = HDF5Constants.H5I_INVALID_HID;
oid = H5.H5Oopen(H5fid, "Never_created", HDF5Constants.H5P_DEFAULT);
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
@Test
- public void testH5Oget_info_dataset() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oget_info_dataset()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
- oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
obj_info = H5.H5Oget_info(oid);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Oget_info: " + err);
}
- assertFalse("H5Oget_info ",obj_info==null);
- assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ assertFalse("H5Oget_info ", obj_info == null);
+ assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
@Test
- public void testH5Oget_info_hardlink() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oget_info_hardlink()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
- oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
obj_info = H5.H5Oget_info(oid);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Oget_info: " + err);
}
- assertFalse("H5Oget_info ",obj_info==null);
- assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ assertFalse("H5Oget_info ", obj_info == null);
+ assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
@Test
- public void testH5Oget_info_group() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oget_info_group()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
- oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
obj_info = H5.H5Oget_info(oid);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Oget_info: " + err);
}
- assertFalse("H5Oget_info ",obj_info==null);
- assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_GROUP);
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ assertFalse("H5Oget_info ", obj_info == null);
+ assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_GROUP);
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
@Test
- public void testH5Oget_info_datatype() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oget_info_datatype()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
- oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT);
obj_info = H5.H5Oget_info(oid);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Oget_info: " + err);
}
- assertFalse("H5Oget_info ",obj_info==null);
- assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_NAMED_DATATYPE);
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ assertFalse("H5Oget_info ", obj_info == null);
+ assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_NAMED_DATATYPE);
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_info_by_name_not_exist_name() throws Throwable {
+ public void testH5Oget_info_by_name_not_exist_name() throws Throwable
+ {
H5.H5Oget_info_by_name(H5fid, "None", HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_info_by_name_not_exists() throws Throwable {
+ public void testH5Oget_info_by_name_not_exists() throws Throwable
+ {
H5.H5Oget_info_by_name(H5fid, "Bogus", HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Oget_info_by_name_dataset() {
+ public void testH5Oget_info_by_name_dataset()
+ {
H5O_info_t obj_info = null;
try {
@@ -165,12 +198,13 @@ public class TestH5Obasic {
err.printStackTrace();
fail("H5.H5Oget_info: " + err);
}
- assertFalse("H5Oget_info ",obj_info==null);
- assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
+ assertFalse("H5Oget_info ", obj_info == null);
+ assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
}
@Test
- public void testH5Oget_info_by_name_hardlink() {
+ public void testH5Oget_info_by_name_hardlink()
+ {
H5O_info_t obj_info = null;
try {
obj_info = H5.H5Oget_info_by_name(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
@@ -179,12 +213,13 @@ public class TestH5Obasic {
err.printStackTrace();
fail("H5.H5Oget_info: " + err);
}
- assertFalse("H5Oget_info ",obj_info==null);
- assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
+ assertFalse("H5Oget_info ", obj_info == null);
+ assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
}
@Test
- public void testH5Oget_info_by_name_group() {
+ public void testH5Oget_info_by_name_group()
+ {
H5O_info_t obj_info = null;
try {
obj_info = H5.H5Oget_info_by_name(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
@@ -193,12 +228,13 @@ public class TestH5Obasic {
err.printStackTrace();
fail("H5.H5Oget_info: " + err);
}
- assertFalse("H5Oget_info ",obj_info==null);
- assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_GROUP);
+ assertFalse("H5Oget_info ", obj_info == null);
+ assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_GROUP);
}
@Test
- public void testH5Oget_info_by_name_datatype() {
+ public void testH5Oget_info_by_name_datatype()
+ {
H5O_info_t obj_info = null;
try {
obj_info = H5.H5Oget_info_by_name(H5fid, "DT1", HDF5Constants.H5P_DEFAULT);
@@ -207,36 +243,45 @@ public class TestH5Obasic {
err.printStackTrace();
fail("H5.H5Oget_info: " + err);
}
- assertFalse("H5Oget_info ",obj_info==null);
- assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_NAMED_DATATYPE);
+ assertFalse("H5Oget_info ", obj_info == null);
+ assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_NAMED_DATATYPE);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_info_by_idx_name_not_exist_name() throws Throwable {
- H5.H5Oget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ public void testH5Oget_info_by_idx_name_not_exist_name() throws Throwable
+ {
+ H5.H5Oget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0,
+ HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_info_by_idx_name_not_exist_create() throws Throwable {
- H5.H5Oget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ public void testH5Oget_info_by_idx_name_not_exist_create() throws Throwable
+ {
+ H5.H5Oget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0,
+ HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_info_by_idx_not_exist_name() throws Throwable {
- H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT);
+ public void testH5Oget_info_by_idx_not_exist_name() throws Throwable
+ {
+ H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5,
+ HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_info_by_idx_not_exist_create() throws Throwable {
- H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT);
+ public void testH5Oget_info_by_idx_not_exist_create() throws Throwable
+ {
+ H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5,
+ HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Oget_info_by_idx_n0() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oget_info_by_idx_n0()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
- oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
obj_info = H5.H5Oget_info(oid);
}
catch (Throwable err) {
@@ -244,25 +289,32 @@ public class TestH5Obasic {
fail("testH5Oget_info_by_idx_n0:H5.H5Oget_info: " + err);
}
H5la_ds1 = obj_info.token;
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
try {
- obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Oget_info_by_idx_n0:H5.H5Oget_info_by_idx: " + err);
}
- assertFalse("testH5Oget_info_by_idx_n0:H5Oget_info_by_idx ",obj_info==null);
- assertTrue("testH5Oget_info_by_idx_n0:H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
+ assertFalse("testH5Oget_info_by_idx_n0:H5Oget_info_by_idx ", obj_info == null);
+ assertTrue("testH5Oget_info_by_idx_n0:H5Oget_info_by_idx link type",
+ obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
assertTrue("testH5Oget_info_by_idx_n0:Link Object token", obj_info.token.equals(H5la_ds1));
}
@Test
- public void testH5Oget_info_by_idx_n3() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oget_info_by_idx_n3()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
- oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
obj_info = H5.H5Oget_info(oid);
}
catch (Throwable err) {
@@ -270,26 +322,33 @@ public class TestH5Obasic {
fail("testH5Oget_info_by_idx_n3:H5.H5Oget_info: " + err);
}
H5la_l1 = obj_info.token;
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
try {
- obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT);
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Oget_info_by_idx_n3:H5.H5Oget_info_by_idx: " + err);
}
- assertFalse("testH5Oget_info_by_idx_n3:H5Oget_info_by_idx ",obj_info==null);
- assertTrue("testH5Oget_info_by_idx_n3:H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
+ assertFalse("testH5Oget_info_by_idx_n3:H5Oget_info_by_idx ", obj_info == null);
+ assertTrue("testH5Oget_info_by_idx_n3:H5Oget_info_by_idx link type",
+ obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
assertTrue("testH5Oget_info_by_idx_n3:Link Object Token", obj_info.token.equals(H5la_l1));
}
@Test
- public void testH5Oget_native_info_dataset() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oget_native_info_dataset()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
- oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
native_info = H5.H5Oget_native_info(oid);
}
catch (Throwable err) {
@@ -300,16 +359,21 @@ public class TestH5Obasic {
assertFalse("H5Oget_native_info ", native_info.hdr_info == null);
assertFalse("H5Oget_native_info ", native_info.obj_info == null);
assertFalse("H5Oget_native_info ", native_info.attr_info == null);
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
@Test
- public void testH5Oget_native_info_hardlink() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oget_native_info_hardlink()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
- oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
native_info = H5.H5Oget_native_info(oid);
}
catch (Throwable err) {
@@ -320,16 +384,21 @@ public class TestH5Obasic {
assertFalse("H5Oget_native_info ", native_info.hdr_info == null);
assertFalse("H5Oget_native_info ", native_info.obj_info == null);
assertFalse("H5Oget_native_info ", native_info.attr_info == null);
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
@Test
- public void testH5Oget_native_info_group() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oget_native_info_group()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
- oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
native_info = H5.H5Oget_native_info(oid);
}
catch (Throwable err) {
@@ -340,16 +409,21 @@ public class TestH5Obasic {
assertFalse("H5Oget_native_info ", native_info.hdr_info == null);
assertFalse("H5Oget_native_info ", native_info.obj_info == null);
assertFalse("H5Oget_native_info ", native_info.attr_info == null);
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
@Test
- public void testH5Oget_native_info_datatype() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oget_native_info_datatype()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
- oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT);
native_info = H5.H5Oget_native_info(oid);
}
catch (Throwable err) {
@@ -360,21 +434,28 @@ public class TestH5Obasic {
assertFalse("H5Oget_native_info ", native_info.hdr_info == null);
assertFalse("H5Oget_native_info ", native_info.obj_info == null);
assertFalse("H5Oget_native_info ", native_info.attr_info == null);
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_native_info_by_name_not_exist_name() throws Throwable {
+ public void testH5Oget_native_info_by_name_not_exist_name() throws Throwable
+ {
H5.H5Oget_native_info_by_name(H5fid, "None", HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_native_info_by_name_not_exists() throws Throwable {
+ public void testH5Oget_native_info_by_name_not_exists() throws Throwable
+ {
H5.H5Oget_native_info_by_name(H5fid, "Bogus", HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Oget_native_info_by_name_dataset() {
+ public void testH5Oget_native_info_by_name_dataset()
+ {
H5O_native_info_t native_info = null;
try {
@@ -391,7 +472,8 @@ public class TestH5Obasic {
}
@Test
- public void testH5Oget_native_info_by_name_hardlink() {
+ public void testH5Oget_native_info_by_name_hardlink()
+ {
H5O_native_info_t native_info = null;
try {
@@ -408,7 +490,8 @@ public class TestH5Obasic {
}
@Test
- public void testH5Oget_native_info_by_name_group() {
+ public void testH5Oget_native_info_by_name_group()
+ {
H5O_native_info_t native_info = null;
try {
@@ -425,7 +508,8 @@ public class TestH5Obasic {
}
@Test
- public void testH5Oget_native_info_by_name_datatype() {
+ public void testH5Oget_native_info_by_name_datatype()
+ {
H5O_native_info_t native_info = null;
try {
@@ -442,35 +526,44 @@ public class TestH5Obasic {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_native_info_by_idx_name_not_exist_name() throws Throwable {
- H5.H5Oget_native_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ public void testH5Oget_native_info_by_idx_name_not_exist_name() throws Throwable
+ {
+ H5.H5Oget_native_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0,
+ HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_native_info_by_idx_name_not_exist_create() throws Throwable {
- H5.H5Oget_native_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ public void testH5Oget_native_info_by_idx_name_not_exist_create() throws Throwable
+ {
+ H5.H5Oget_native_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_native_info_by_idx_not_exist_name() throws Throwable {
- H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT);
+ public void testH5Oget_native_info_by_idx_not_exist_name() throws Throwable
+ {
+ H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5,
+ HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_native_info_by_idx_not_exist_create() throws Throwable {
- H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT);
+ public void testH5Oget_native_info_by_idx_not_exist_create() throws Throwable
+ {
+ H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC,
+ 5, HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Oget_native_info_by_idx_n0() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oget_native_info_by_idx_n0()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
H5O_hdr_info_t ohdr;
H5_ih_info_t oinfo;
H5_ih_info_t ainfo;
try {
- oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
native_info = H5.H5Oget_native_info(oid);
}
catch (Throwable err) {
@@ -478,14 +571,20 @@ public class TestH5Obasic {
fail("testH5Oget_native_info_by_idx_n0:H5.H5Oget_native_info: " + err);
}
- ohdr = native_info.hdr_info;
+ ohdr = native_info.hdr_info;
oinfo = native_info.obj_info;
ainfo = native_info.attr_info;
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
try {
- native_info = H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ native_info =
+ H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -501,15 +600,16 @@ public class TestH5Obasic {
}
@Test
- public void testH5Oget_native_info_by_idx_n3() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oget_native_info_by_idx_n3()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
H5O_hdr_info_t ohdr;
H5_ih_info_t oinfo;
H5_ih_info_t ainfo;
try {
- oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
native_info = H5.H5Oget_native_info(oid);
}
catch (Throwable err) {
@@ -517,14 +617,20 @@ public class TestH5Obasic {
fail("testH5Oget_native_info_by_idx_n3:H5.H5Oget_native_info: " + err);
}
- ohdr = native_info.hdr_info;
+ ohdr = native_info.hdr_info;
oinfo = native_info.obj_info;
ainfo = native_info.attr_info;
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
try {
- native_info = H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT);
+ native_info =
+ H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME,
+ HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -540,11 +646,13 @@ public class TestH5Obasic {
}
@Test
- public void testH5Ovisit() {
+ public void testH5Ovisit()
+ {
class idata {
public String link_name = null;
- public int link_type = -1;
- idata(String name, int type) {
+ public int link_type = -1;
+ idata(String name, int type)
+ {
this.link_name = name;
this.link_type = type;
}
@@ -554,7 +662,8 @@ public class TestH5Obasic {
}
H5O_iterate_opdata_t iter_data = new H5O_iter_data();
class H5O_iter_callback implements H5O_iterate_t {
- public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data)
+ {
idata id = new idata(name, info.type);
((H5O_iter_data)op_data).iterdata.add(id);
return 0;
@@ -568,22 +677,31 @@ public class TestH5Obasic {
err.printStackTrace();
fail("H5.H5Ovisit: " + err);
}
- assertFalse("H5Ovisit ",((H5O_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Ovisit "+((H5O_iter_data)iter_data).iterdata.size(),((H5O_iter_data)iter_data).iterdata.size()==5);
- assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(0)).link_name,(((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".")==0);
- assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(1)).link_name,(((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS1")==0);
- assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(2)).link_name,(((H5O_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("DT1")==0);
- assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(3)).link_name,(((H5O_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1")==0);
- assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(4)).link_name,(((H5O_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("G1/DS2")==0);
-// assertTrue("H5Ovisit "+((idata)((H5O_iter_data)iter_data).iterdata.get(5)).link_name,((idata)((H5O_iter_data)iter_data).iterdata.get(5)).link_name.compareToIgnoreCase("L1")==0);
+ assertFalse("H5Ovisit ", ((H5O_iter_data)iter_data).iterdata.isEmpty());
+ assertTrue("H5Ovisit " + ((H5O_iter_data)iter_data).iterdata.size(),
+ ((H5O_iter_data)iter_data).iterdata.size() == 5);
+ assertTrue("H5Ovisit " + (((H5O_iter_data)iter_data).iterdata.get(0)).link_name,
+ (((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".") == 0);
+ assertTrue("H5Ovisit " + (((H5O_iter_data)iter_data).iterdata.get(1)).link_name,
+ (((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS1") == 0);
+ assertTrue("H5Ovisit " + (((H5O_iter_data)iter_data).iterdata.get(2)).link_name,
+ (((H5O_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("DT1") == 0);
+ assertTrue("H5Ovisit " + (((H5O_iter_data)iter_data).iterdata.get(3)).link_name,
+ (((H5O_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1") == 0);
+ assertTrue("H5Ovisit " + (((H5O_iter_data)iter_data).iterdata.get(4)).link_name,
+ (((H5O_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("G1/DS2") == 0);
+ // assertTrue("H5Ovisit
+ // "+((idata)((H5O_iter_data)iter_data).iterdata.get(5)).link_name,((idata)((H5O_iter_data)iter_data).iterdata.get(5)).link_name.compareToIgnoreCase("L1")==0);
}
@Test
- public void testH5Ovisit_by_name() {
+ public void testH5Ovisit_by_name()
+ {
class idata {
public String link_name = null;
- public int link_type = -1;
- idata(String name, int type) {
+ public int link_type = -1;
+ idata(String name, int type)
+ {
this.link_name = name;
this.link_type = type;
}
@@ -593,7 +711,8 @@ public class TestH5Obasic {
}
H5O_iterate_opdata_t iter_data = new H5O_iter_data();
class H5O_iter_callback implements H5O_iterate_t {
- public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data)
+ {
idata id = new idata(name, info.type);
((H5O_iter_data)op_data).iterdata.add(id);
return 0;
@@ -601,20 +720,25 @@ public class TestH5Obasic {
}
H5O_iterate_t iter_cb = new H5O_iter_callback();
try {
- H5.H5Ovisit_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT);
+ H5.H5Ovisit_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb,
+ iter_data, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Ovisit_by_name: " + err);
}
- assertFalse("H5Ovisit_by_name ",((H5O_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Ovisit_by_name "+((H5O_iter_data)iter_data).iterdata.size(),((H5O_iter_data)iter_data).iterdata.size()==2);
- assertTrue("H5Ovisit_by_name "+(((H5O_iter_data)iter_data).iterdata.get(0)).link_name,(((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".")==0);
- assertTrue("H5Ovisit_by_name "+(((H5O_iter_data)iter_data).iterdata.get(1)).link_name,(((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS2")==0);
+ assertFalse("H5Ovisit_by_name ", ((H5O_iter_data)iter_data).iterdata.isEmpty());
+ assertTrue("H5Ovisit_by_name " + ((H5O_iter_data)iter_data).iterdata.size(),
+ ((H5O_iter_data)iter_data).iterdata.size() == 2);
+ assertTrue("H5Ovisit_by_name " + (((H5O_iter_data)iter_data).iterdata.get(0)).link_name,
+ (((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".") == 0);
+ assertTrue("H5Ovisit_by_name " + (((H5O_iter_data)iter_data).iterdata.get(1)).link_name,
+ (((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS2") == 0);
}
@Test
- public void testH5Oexists_by_name() {
+ public void testH5Oexists_by_name()
+ {
boolean name_exists = false;
try {
name_exists = H5.H5Oexists_by_name(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
@@ -624,16 +748,17 @@ public class TestH5Obasic {
fail("H5.H5Oexists_by_name: " + err);
}
assertTrue("H5Oexists_by_name ", name_exists);
- //TODO get dangling link result
+ // TODO get dangling link result
}
@Test
- public void testH5Oopen_by_token() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oopen_by_token()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {
- oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
obj_info = H5.H5Oget_info(oid);
}
catch (Throwable err) {
@@ -641,7 +766,11 @@ public class TestH5Obasic {
fail("testH5Oopen_by_token: H5.H5Oget_info: " + err);
}
H5la_ds1 = obj_info.token;
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
try {
oid = H5.H5Oopen_by_token(H5fid, H5la_ds1);
}
@@ -656,22 +785,28 @@ public class TestH5Obasic {
err.printStackTrace();
fail("testH5Oopen_by_token: H5.H5Oget_info: " + err);
}
- assertFalse("testH5Oopen_by_token: H5Oget_info ",obj_info==null);
- assertTrue("testH5Oopen_by_token: H5Oget_info link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
+ assertFalse("testH5Oopen_by_token: H5Oget_info ", obj_info == null);
+ assertTrue("testH5Oopen_by_token: H5Oget_info link type",
+ obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
assertTrue("testH5Oopen_by_token: Link Object Token", obj_info.token.equals(H5la_ds1));
}
finally {
- try{H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Oopen_by_idx_n0() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oopen_by_idx_n0()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {
- oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
obj_info = H5.H5Oget_info(oid);
}
catch (Throwable err) {
@@ -679,9 +814,14 @@ public class TestH5Obasic {
fail("testH5Oopen_by_idx_n0: H5.H5Oget_info: " + err);
}
H5la_ds1 = obj_info.token;
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
try {
- oid = H5.H5Oopen_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ oid = H5.H5Oopen_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -694,22 +834,28 @@ public class TestH5Obasic {
err.printStackTrace();
fail("testH5Oopen_by_idx_n0: H5.H5Oget_info_by_idx: " + err);
}
- assertFalse("testH5Oopen_by_idx_n0: H5Oget_info_by_idx ",obj_info==null);
- assertTrue("testH5Oopen_by_idx_n0: H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
+ assertFalse("testH5Oopen_by_idx_n0: H5Oget_info_by_idx ", obj_info == null);
+ assertTrue("testH5Oopen_by_idx_n0: H5Oget_info_by_idx link type",
+ obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
assertTrue("testH5Oopen_by_idx_n0: Link Object Token", obj_info.token.equals(H5la_ds1));
}
finally {
- try{H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Oopen_by_idx_n3() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oopen_by_idx_n3()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {
- oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
obj_info = H5.H5Oget_info(oid);
}
catch (Throwable err) {
@@ -717,9 +863,14 @@ public class TestH5Obasic {
fail("testH5Oopen_by_idx_n3:H5.H5Oget_info: " + err);
}
H5la_l1 = obj_info.token;
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
try {
- oid = H5.H5Oopen_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT);
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ oid = H5.H5Oopen_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -732,12 +883,17 @@ public class TestH5Obasic {
err.printStackTrace();
fail("testH5Oopen_by_idx_n3:H5.H5Oget_info_by_idx: " + err);
}
- assertFalse("testH5Oopen_by_idx_n3:H5Oget_info_by_idx ",obj_info==null);
- assertTrue("testH5Oopen_by_idx_n3:H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
+ assertFalse("testH5Oopen_by_idx_n3:H5Oget_info_by_idx ", obj_info == null);
+ assertTrue("testH5Oopen_by_idx_n3:H5Oget_info_by_idx link type",
+ obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
assertTrue("testH5Oopen_by_idx_n3:Link Object Token", obj_info.token.equals(H5la_l1));
}
finally {
- try{H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
}
}
diff --git a/java/test/TestH5Ocopy.java b/java/test/TestH5Ocopy.java
index 821cad3..e429fef 100644
--- a/java/test/TestH5Ocopy.java
+++ b/java/test/TestH5Ocopy.java
@@ -31,20 +31,22 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Ocopy {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String FILENAME = "testRefsattribute.h5";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did1 = HDF5Constants.H5I_INVALID_HID;
- long H5did2 = HDF5Constants.H5I_INVALID_HID;
- long H5gcpl = HDF5Constants.H5I_INVALID_HID;
- long H5gid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid2 = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { 2 };
-
- private final void _deleteFile(String filename) {
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did1 = HDF5Constants.H5I_INVALID_HID;
+ long H5did2 = HDF5Constants.H5I_INVALID_HID;
+ long H5gcpl = HDF5Constants.H5I_INVALID_HID;
+ long H5gid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid2 = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {2};
+
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
@@ -57,87 +59,113 @@ public class TestH5Ocopy {
}
}
- private final long _createDataset(long fid, long dsid, String name, long dapl) {
+ private final long _createDataset(long fid, long dsid, String name, long dapl)
+ {
long did = HDF5Constants.H5I_INVALID_HID;
try {
- did = H5.H5Dcreate(fid, name,
- HDF5Constants.H5T_STD_I32BE, dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+ did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Dcreate: " + err);
}
- assertTrue("TestH5O._createDataset: ",did >= 0);
+ assertTrue("TestH5O._createDataset: ", did >= 0);
return did;
}
- private final long _createGroup(long fid, String name) {
+ private final long _createGroup(long fid, String name)
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
try {
H5gcpl = HDF5Constants.H5P_DEFAULT;
- gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
- H5gcpl, HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, H5gcpl, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Gcreate: " + err);
}
- assertTrue("TestH5O._createGroup: ",gid >= 0);
+ assertTrue("TestH5O._createGroup: ", gid >= 0);
return gid;
}
@Before
- public void createH5file()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
- H5fid = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- H5dsid2 = H5.H5Screate(HDF5Constants.H5S_SCALAR);
- H5did1 = _createDataset(H5fid, H5dsid2, "DS2", HDF5Constants.H5P_DEFAULT);
- H5dsid = H5.H5Screate_simple(1, dims, null);
- H5gid = _createGroup(H5fid, "/G1");
- H5did2 = _createDataset(H5gid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ H5dsid2 = H5.H5Screate(HDF5Constants.H5S_SCALAR);
+ H5did1 = _createDataset(H5fid, H5dsid2, "DS2", HDF5Constants.H5P_DEFAULT);
+ H5dsid = H5.H5Screate_simple(1, dims, null);
+ H5gid = _createGroup(H5fid, "/G1");
+ H5did2 = _createDataset(H5gid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5O.createH5file: " + err);
}
- assertTrue("TestH5O.createH5file: H5.H5Fcreate: ",H5fid >= 0);
- assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ",H5dsid >= 0);
- assertTrue("TestH5O.createH5file: H5.H5Gcreate: ",H5gid >= 0);
+ assertTrue("TestH5O.createH5file: H5.H5Fcreate: ", H5fid >= 0);
+ assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ", H5dsid >= 0);
+ assertTrue("TestH5O.createH5file: H5.H5Gcreate: ", H5gid >= 0);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5gid > 0)
- try {H5.H5Gclose(H5gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(H5gid);
+ }
+ catch (Exception ex) {
+ }
if (H5did2 > 0)
- try {H5.H5Dclose(H5did2);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did2);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid2 > 0)
- try {H5.H5Sclose(H5dsid2);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid2);
+ }
+ catch (Exception ex) {
+ }
if (H5did1 > 0)
- try {H5.H5Dclose(H5did1);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did1);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
_deleteFile(FILENAME);
System.out.println();
}
@Test
- public void testH5OcopyRefsAttr() {
- long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
+ public void testH5OcopyRefsAttr()
+ {
+ long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
byte[][] dset_data = new byte[2][HDF5Constants.H5R_REF_BUF_SIZE];
- long attribute_id = HDF5Constants.H5I_INVALID_HID;
+ long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
try {
@@ -147,7 +175,7 @@ public class TestH5Ocopy {
err.printStackTrace();
fail("testH5OcopyRefsAttr: H5Rcreate_object " + err);
}
-
+
try {
dset_data[1] = H5.H5Rcreate_object(H5fid, "DS2", HDF5Constants.H5P_DEFAULT);
}
@@ -155,27 +183,40 @@ public class TestH5Ocopy {
err.printStackTrace();
fail("testH5OcopyRefsAttr: H5Rcreate_object " + err);
}
-
+
try {
- attribute_id = H5.H5Acreate(H5did2, "A1", HDF5Constants.H5T_STD_REF, H5dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attribute_id = H5.H5Acreate(H5did2, "A1", HDF5Constants.H5T_STD_REF, H5dsid,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue("testH5OcopyRefsAttr.H5Acreate: ", attribute_id >= 0);
H5.H5Awrite(attribute_id, HDF5Constants.H5T_STD_REF, dset_data);
-
+
H5.H5Aclose(attribute_id);
}
catch (Exception ex) {
fail("testH5OcopyRefsAttr: H5Awrite failed");
}
finally {
- try {H5.H5Aclose(attribute_id);} catch (Exception exx) {}
+ try {
+ H5.H5Aclose(attribute_id);
+ }
+ catch (Exception exx) {
+ }
}
}
catch (Exception ex) {
ex.printStackTrace();
}
finally {
- try {H5.H5Rdestroy(dset_data[1]);} catch (Exception ex) {}
- try {H5.H5Rdestroy(dset_data[0]);} catch (Exception ex) {}
+ try {
+ H5.H5Rdestroy(dset_data[1]);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ H5.H5Rdestroy(dset_data[0]);
+ }
+ catch (Exception ex) {
+ }
}
try {
@@ -185,19 +226,24 @@ public class TestH5Ocopy {
H5.H5Ocopy(H5fid, ".", H5fid, "CPYREF", ocp_plist_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception ex) {
- fail("testH5OcopyRefsAttr: H5Ocopy failed");
+ fail("testH5OcopyRefsAttr: H5Ocopy failed");
}
finally {
- try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(ocp_plist_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5OcopyRefsDatasettodiffFile() {
+ public void testH5OcopyRefsDatasettodiffFile()
+ {
byte[][] dset_data = new byte[2][HDF5Constants.H5R_REF_BUF_SIZE];
- long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long H5fid2 = HDF5Constants.H5I_INVALID_HID;
+ long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long H5fid2 = HDF5Constants.H5I_INVALID_HID;
try {
try {
@@ -214,72 +260,96 @@ public class TestH5Ocopy {
err.printStackTrace();
fail("testH5OcopyRefsDatasettodiffFile: H5Rcreate_object " + err);
}
-
+
try {
- dataset_id = H5.H5Dcreate(H5fid, "DSREF",
- HDF5Constants.H5T_STD_REF, H5dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id =
+ H5.H5Dcreate(H5fid, "DSREF", HDF5Constants.H5T_STD_REF, H5dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue("testH5OcopyRefsDatasettodiffFile.H5Dcreate: ", dataset_id >= 0);
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
H5.H5Dclose(dataset_id);
}
catch (Exception ex) {
fail("testH5OcopyRefsDatasettodiffFile: create dataset failed");
}
finally {
- try {H5.H5Dclose(dataset_id);} catch (Exception exx) {}
+ try {
+ H5.H5Dclose(dataset_id);
+ }
+ catch (Exception exx) {
+ }
}
}
catch (Exception ex) {
ex.printStackTrace();
}
finally {
- try {H5.H5Rdestroy(dset_data[0]);} catch (Exception ex) {}
- try {H5.H5Rdestroy(dset_data[1]);} catch (Exception ex) {}
+ try {
+ H5.H5Rdestroy(dset_data[0]);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ H5.H5Rdestroy(dset_data[1]);
+ }
+ catch (Exception ex) {
+ }
}
try {
- //create new file
- H5fid2 = H5.H5Fcreate("copy.h5", HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ // create new file
+ H5fid2 = H5.H5Fcreate("copy.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
assertTrue("testH5OcopyRefsDatasettodiffFile.H5Fcreate: ", H5fid2 >= 0);
H5.H5Fflush(H5fid2, HDF5Constants.H5F_SCOPE_LOCAL);
}
catch (Exception ex) {
- try {H5.H5Fclose(H5fid2);} catch (Exception exx) {}
+ try {
+ H5.H5Fclose(H5fid2);
+ }
+ catch (Exception exx) {
+ }
fail("testH5OcopyRefsDatasettodiffFile: H5Fcreate failed");
}
try {
- //create object copy property list id and set the flags.
+ // create object copy property list id and set the flags.
ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
assertTrue("testH5OcopyRefsDatasettodiffFile.H5Pcreate: ", ocp_plist_id >= 0);
H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
- //Perform copy function.
+ // Perform copy function.
H5.H5Ocopy(H5fid, ".", H5fid2, "CPYREFD", ocp_plist_id, HDF5Constants.H5P_DEFAULT);
}
- catch (Exception ex){
+ catch (Exception ex) {
ex.printStackTrace();
fail("testH5OcopyRefsDatasettodiffFile: H5Ocopy failed");
}
finally {
- try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {}
- try {H5.H5Fclose(H5fid2);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(ocp_plist_id);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ H5.H5Fclose(H5fid2);
+ }
+ catch (Exception ex) {
+ }
}
_deleteFile("copy.h5");
}
@Test
- public void testH5OcopyRefsDatasettosameFile() {
+ public void testH5OcopyRefsDatasettosameFile()
+ {
byte[][] dset_data = new byte[2][HDF5Constants.H5R_REF_BUF_SIZE];
byte[][] read_data = new byte[2][HDF5Constants.H5R_REF_BUF_SIZE];
- long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long did = HDF5Constants.H5I_INVALID_HID;
- int obj_type = -1;
+ long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long did = HDF5Constants.H5I_INVALID_HID;
+ int obj_type = -1;
try {
try {
@@ -289,7 +359,7 @@ public class TestH5Ocopy {
err.printStackTrace();
fail("testH5OcopyRefsDatasettosameFile: H5Rcreate_object " + err);
}
-
+
try {
dset_data[1] = H5.H5Rcreate_object(H5fid, "DS2", HDF5Constants.H5P_DEFAULT);
}
@@ -297,43 +367,54 @@ public class TestH5Ocopy {
err.printStackTrace();
fail("testH5OcopyRefsDatasettosameFile: H5Rcreate_object " + err);
}
-
+
try {
- //Create a dataset and write object references to it.
- dataset_id = H5.H5Dcreate(H5fid, "DSREF",
- HDF5Constants.H5T_STD_REF, H5dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ // Create a dataset and write object references to it.
+ dataset_id =
+ H5.H5Dcreate(H5fid, "DSREF", HDF5Constants.H5T_STD_REF, H5dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue("testH5OcopyRefsDatasettosameFile.H5Dcreate: ", dataset_id >= 0);
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
- //Close the dataset.
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
+ // Close the dataset.
H5.H5Dclose(dataset_id);
}
catch (Exception ex) {
fail("testH5OcopyRefsDatasettosameFile: create dataset failed");
}
finally {
- try {H5.H5Dclose(dataset_id);} catch (Exception exx) {}
+ try {
+ H5.H5Dclose(dataset_id);
+ }
+ catch (Exception exx) {
+ }
}
}
catch (Exception ex) {
ex.printStackTrace();
}
finally {
- try {H5.H5Rdestroy(dset_data[1]);} catch (Exception ex) {}
- try {H5.H5Rdestroy(dset_data[0]);} catch (Exception ex) {}
+ try {
+ H5.H5Rdestroy(dset_data[1]);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ H5.H5Rdestroy(dset_data[0]);
+ }
+ catch (Exception ex) {
+ }
}
try {
ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
assertTrue("testH5OcopyRefsDatasettosameFile.H5Pcreate: ", ocp_plist_id >= 0);
H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
- //Perform copy function.
+ // Perform copy function.
try {
H5.H5Ocopy(H5fid, "DSREF", H5fid, "CPYREFD", ocp_plist_id, HDF5Constants.H5P_DEFAULT);
}
- catch(Exception ex) {
+ catch (Exception ex) {
fail("testH5OcopyRefsDatasettosameFile: H5Ocopy failed");
}
}
@@ -341,11 +422,15 @@ public class TestH5Ocopy {
fail("testH5OcopyRefsDatasettosameFile: H5Pset_copy_object failed");
}
finally {
- try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {}
+ try {
+ H5.H5Pclose(ocp_plist_id);
+ }
+ catch (Exception exx) {
+ }
}
try {
- //Open the dataset that has been copied
+ // Open the dataset that has been copied
try {
did = H5.H5Dopen(H5fid, "DSREF", HDF5Constants.H5P_DEFAULT);
assertTrue("testH5OcopyRefsDatasettosameFile.H5Dopen: ", did >= 0);
@@ -355,9 +440,10 @@ public class TestH5Ocopy {
fail("testH5OcopyRefsDatasettosameFile: H5Dopen failed");
}
- //Read the dataset object references in the read_data buffer.
+ // Read the dataset object references in the read_data buffer.
try {
- H5.H5Dread(did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL,HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, read_data);
+ H5.H5Dread(did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, read_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -369,14 +455,18 @@ public class TestH5Ocopy {
fail("testH5OcopyRefsDatasettosameFile: open and read dataset failed");
}
finally {
- try {H5.H5Dclose(did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(did);
+ }
+ catch (Exception ex) {
+ }
}
try {
- //Get the type of object the reference points to.
+ // Get the type of object the reference points to.
obj_type = H5.H5Rget_obj_type3(read_data[1], HDF5Constants.H5R_OBJECT);
assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET);
-
+
obj_type = H5.H5Rget_obj_type3(read_data[0], HDF5Constants.H5R_OBJECT);
assertEquals(obj_type, HDF5Constants.H5O_TYPE_GROUP);
}
@@ -384,22 +474,32 @@ public class TestH5Ocopy {
ex.printStackTrace();
}
finally {
- try {H5.H5Rdestroy(read_data[1]);} catch (Exception ex) {}
- try {H5.H5Rdestroy(read_data[0]);} catch (Exception ex) {}
+ try {
+ H5.H5Rdestroy(read_data[1]);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ H5.H5Rdestroy(read_data[0]);
+ }
+ catch (Exception ex) {
+ }
}
}
-
+
@Test
- public void testH5OcopyNullRef() throws Throwable {
+ public void testH5OcopyNullRef() throws Throwable
+ {
final long _pid_ = HDF5Constants.H5P_DEFAULT;
- long sid = HDF5Constants.H5I_INVALID_HID;
- long did = HDF5Constants.H5I_INVALID_HID;
- long aid = HDF5Constants.H5I_INVALID_HID;
+ long sid = HDF5Constants.H5I_INVALID_HID;
+ long did = HDF5Constants.H5I_INVALID_HID;
+ long aid = HDF5Constants.H5I_INVALID_HID;
try {
sid = H5.H5Screate_simple(1, new long[] {1}, null);
assertTrue("testH5OcopyNullRef.H5Screate_simple: ", sid >= 0);
- did = H5.H5Dcreate(H5fid, "Dataset_with_null_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_, _pid_, _pid_);
+ did = H5.H5Dcreate(H5fid, "Dataset_with_null_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_,
+ _pid_, _pid_);
assertTrue("testH5OcopyNullRef.H5Dcreate: ", did > 0);
aid = H5.H5Acreate(did, "Null_Ref", HDF5Constants.H5T_STD_REF, sid, _pid_, _pid_);
assertTrue("testH5OcopyNullRef.H5Acreate: ", aid > 0);
@@ -408,20 +508,36 @@ public class TestH5Ocopy {
ex.printStackTrace();
}
finally {
- try {H5.H5Dclose(did);} catch (Exception exx) {}
- try {H5.H5Aclose(aid);} catch (Exception exx) {}
- try {H5.H5Sclose(sid);} catch (Exception exx) {}
+ try {
+ H5.H5Dclose(did);
+ }
+ catch (Exception exx) {
+ }
+ try {
+ H5.H5Aclose(aid);
+ }
+ catch (Exception exx) {
+ }
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception exx) {
+ }
}
long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
assertTrue("testH5OcopyNullRef.H5Pcreate: ", ocp_plist_id >= 0);
H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
try {
- H5.H5Ocopy(H5fid, "/Dataset_with_null_Ref", H5fid, "/Dataset_with_null_Ref_cp", ocp_plist_id, _pid_);
+ H5.H5Ocopy(H5fid, "/Dataset_with_null_Ref", H5fid, "/Dataset_with_null_Ref_cp", ocp_plist_id,
+ _pid_);
}
finally {
- try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {}
+ try {
+ H5.H5Pclose(ocp_plist_id);
+ }
+ catch (Exception exx) {
+ }
}
}
-
}
diff --git a/java/test/TestH5OcopyOld.java b/java/test/TestH5OcopyOld.java
index e547051..2cfccc7 100644
--- a/java/test/TestH5OcopyOld.java
+++ b/java/test/TestH5OcopyOld.java
@@ -31,20 +31,22 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5OcopyOld {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String FILENAME = "testRefsattributeO.h5";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did1 = HDF5Constants.H5I_INVALID_HID;
- long H5did2 = HDF5Constants.H5I_INVALID_HID;
- long H5gcpl = HDF5Constants.H5I_INVALID_HID;
- long H5gid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid2 = HDF5Constants.H5I_INVALID_HID;
- long[] dims = { 2 };
-
- private final void _deleteFile(String filename) {
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did1 = HDF5Constants.H5I_INVALID_HID;
+ long H5did2 = HDF5Constants.H5I_INVALID_HID;
+ long H5gcpl = HDF5Constants.H5I_INVALID_HID;
+ long H5gid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid2 = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {2};
+
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
@@ -57,93 +59,119 @@ public class TestH5OcopyOld {
}
}
- private final long _createDataset(long fid, long dsid, String name, long dapl) {
+ private final long _createDataset(long fid, long dsid, String name, long dapl)
+ {
long did = HDF5Constants.H5I_INVALID_HID;
try {
- did = H5.H5Dcreate(fid, name,
- HDF5Constants.H5T_STD_I32BE, dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+ did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Dcreate: " + err);
}
- assertTrue("TestH5O._createDataset: ",did >= 0);
+ assertTrue("TestH5O._createDataset: ", did >= 0);
return did;
}
- private final long _createGroup(long fid, String name) {
+ private final long _createGroup(long fid, String name)
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
try {
H5gcpl = HDF5Constants.H5P_DEFAULT;
- gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
- H5gcpl, HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, H5gcpl, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Gcreate: " + err);
}
- assertTrue("TestH5O._createGroup: ",gid >= 0);
+ assertTrue("TestH5O._createGroup: ", gid >= 0);
return gid;
}
@Before
- public void createH5file()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
- H5fid = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- H5dsid2 = H5.H5Screate(HDF5Constants.H5S_SCALAR);
- H5did1 = _createDataset(H5fid, H5dsid2, "DS2", HDF5Constants.H5P_DEFAULT);
- H5dsid = H5.H5Screate_simple(1, dims, null);
- H5gid = _createGroup(H5fid, "/G1");
- H5did2 = _createDataset(H5gid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ H5dsid2 = H5.H5Screate(HDF5Constants.H5S_SCALAR);
+ H5did1 = _createDataset(H5fid, H5dsid2, "DS2", HDF5Constants.H5P_DEFAULT);
+ H5dsid = H5.H5Screate_simple(1, dims, null);
+ H5gid = _createGroup(H5fid, "/G1");
+ H5did2 = _createDataset(H5gid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5O.createH5file: " + err);
}
- assertTrue("TestH5O.createH5file: H5.H5Fcreate: ",H5fid >= 0);
- assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ",H5dsid >= 0);
- assertTrue("TestH5O.createH5file: H5.H5Gcreate: ",H5gid >= 0);
+ assertTrue("TestH5O.createH5file: H5.H5Fcreate: ", H5fid >= 0);
+ assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ", H5dsid >= 0);
+ assertTrue("TestH5O.createH5file: H5.H5Gcreate: ", H5gid >= 0);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5gid > 0)
- try {H5.H5Gclose(H5gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(H5gid);
+ }
+ catch (Exception ex) {
+ }
if (H5did2 > 0)
- try {H5.H5Dclose(H5did2);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did2);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid2 > 0)
- try {H5.H5Sclose(H5dsid2);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid2);
+ }
+ catch (Exception ex) {
+ }
if (H5did1 > 0)
- try {H5.H5Dclose(H5did1);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did1);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
_deleteFile(FILENAME);
System.out.println();
}
@Test
- public void testH5OcopyRefsAttr() {
+ public void testH5OcopyRefsAttr()
+ {
long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
- byte rbuf0[]=null , rbuf1[] = null;
- byte[] dset_data = new byte[16];
+ byte rbuf0[] = null, rbuf1[] = null;
+ byte[] dset_data = new byte[16];
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
rbuf0 = H5.H5Rcreate(H5fid, "/G1", HDF5Constants.H5R_OBJECT, -1);
rbuf1 = H5.H5Rcreate(H5fid, "DS2", HDF5Constants.H5R_OBJECT, -1);
- //System.arraycopy(rbuf0, 0, dset_data, 0, 8);
+ // System.arraycopy(rbuf0, 0, dset_data, 0, 8);
System.arraycopy(rbuf1, 0, dset_data, 8, 8);
}
catch (Exception ex) {
@@ -151,7 +179,8 @@ public class TestH5OcopyOld {
}
try {
- attribute_id = H5.H5Acreate(H5did2, "A1", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ attribute_id = H5.H5Acreate(H5did2, "A1", HDF5Constants.H5T_STD_REF_OBJ, H5dsid,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue("testH5OcopyRefsAttr.H5Acreate: ", attribute_id >= 0);
H5.H5Awrite(attribute_id, HDF5Constants.H5T_STD_REF_OBJ, dset_data);
@@ -161,7 +190,11 @@ public class TestH5OcopyOld {
fail("testH5OcopyRefsAttr: H5Awrite failed");
}
finally {
- try {H5.H5Aclose(attribute_id);} catch (Exception exx) {}
+ try {
+ H5.H5Aclose(attribute_id);
+ }
+ catch (Exception exx) {
+ }
}
try {
@@ -171,82 +204,103 @@ public class TestH5OcopyOld {
H5.H5Ocopy(H5fid, ".", H5fid, "CPYREF", ocp_plist_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception ex) {
- fail("testH5OcopyRefsAttr: H5Ocopy failed");
+ fail("testH5OcopyRefsAttr: H5Ocopy failed");
}
finally {
- try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(ocp_plist_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5OcopyRefsDatasettodiffFile() {
- byte rbuf1[] = null;
- byte[] dset_data = new byte[16];
+ public void testH5OcopyRefsDatasettodiffFile()
+ {
+ byte rbuf1[] = null;
+ byte[] dset_data = new byte[16];
long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long H5fid2 = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long H5fid2 = HDF5Constants.H5I_INVALID_HID;
try {
rbuf1 = H5.H5Rcreate(H5fid, "DS2", HDF5Constants.H5R_OBJECT, -1);
System.arraycopy(rbuf1, 0, dset_data, 8, 8);
- dataset_id = H5.H5Dcreate(H5fid, "DSREF",
- HDF5Constants.H5T_STD_REF_OBJ, H5dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ dataset_id =
+ H5.H5Dcreate(H5fid, "DSREF", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue("testH5OcopyRefsDatasettodiffFile.H5Dcreate: ", dataset_id >= 0);
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
H5.H5Dclose(dataset_id);
}
catch (Exception ex) {
fail("testH5OcopyRefsDatasettodiffFile: create dataset failed");
}
finally {
- try {H5.H5Dclose(dataset_id);} catch (Exception exx) {}
+ try {
+ H5.H5Dclose(dataset_id);
+ }
+ catch (Exception exx) {
+ }
}
try {
- //create new file
- H5fid2 = H5.H5Fcreate("copy.h5", HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ // create new file
+ H5fid2 = H5.H5Fcreate("copy.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
assertTrue("testH5OcopyRefsDatasettodiffFile.H5Fcreate: ", H5fid2 >= 0);
H5.H5Fflush(H5fid2, HDF5Constants.H5F_SCOPE_LOCAL);
}
catch (Exception ex) {
- try {H5.H5Fclose(H5fid2);} catch (Exception exx) {}
+ try {
+ H5.H5Fclose(H5fid2);
+ }
+ catch (Exception exx) {
+ }
fail("testH5OcopyRefsDatasettodiffFile: H5Fcreate failed");
}
try {
- //create object copy property list id and set the flags.
+ // create object copy property list id and set the flags.
ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
assertTrue("testH5OcopyRefsDatasettodiffFile.H5Pcreate: ", ocp_plist_id >= 0);
H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
- //Perform copy function.
+ // Perform copy function.
H5.H5Ocopy(H5fid, ".", H5fid2, "CPYREFD", ocp_plist_id, HDF5Constants.H5P_DEFAULT);
}
- catch (Exception ex){
+ catch (Exception ex) {
ex.printStackTrace();
fail("testH5OcopyRefsDatasettodiffFile: H5Ocopy failed");
}
finally {
- try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {}
- try {H5.H5Fclose(H5fid2);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(ocp_plist_id);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ H5.H5Fclose(H5fid2);
+ }
+ catch (Exception ex) {
+ }
}
_deleteFile("copy.h5");
}
@Test
- public void testH5OcopyRefsDatasettosameFile() {
- byte rbuf0[]=null , rbuf1[] = null;
- byte[] dset_data = new byte[16];
+ public void testH5OcopyRefsDatasettosameFile()
+ {
+ byte rbuf0[] = null, rbuf1[] = null;
+ byte[] dset_data = new byte[16];
long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long did = HDF5Constants.H5I_INVALID_HID;
- int obj_type = -1;
- byte[] read_data = new byte[16];
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long did = HDF5Constants.H5I_INVALID_HID;
+ int obj_type = -1;
+ byte[] read_data = new byte[16];
try {
rbuf0 = H5.H5Rcreate(H5fid, "/G1", HDF5Constants.H5R_OBJECT, -1);
@@ -254,19 +308,22 @@ public class TestH5OcopyOld {
System.arraycopy(rbuf0, 0, dset_data, 0, 8);
System.arraycopy(rbuf1, 0, dset_data, 8, 8);
- //Create a dataset and write object references to it.
- dataset_id = H5.H5Dcreate(H5fid, "DSREF",
- HDF5Constants.H5T_STD_REF_OBJ, H5dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ // Create a dataset and write object references to it.
+ dataset_id =
+ H5.H5Dcreate(H5fid, "DSREF", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue("testH5OcopyRefsDatasettosameFile.H5Dcreate: ", dataset_id >= 0);
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data);
- //Close the dataset.
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
+ // Close the dataset.
H5.H5Dclose(dataset_id);
}
catch (Exception ex) {
- try {H5.H5Dclose(dataset_id);} catch (Exception exx) {}
+ try {
+ H5.H5Dclose(dataset_id);
+ }
+ catch (Exception exx) {
+ }
fail("testH5OcopyRefsDatasettosameFile: create dataset failed");
}
@@ -276,37 +333,50 @@ public class TestH5OcopyOld {
H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
}
catch (Exception ex) {
- try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {}
+ try {
+ H5.H5Pclose(ocp_plist_id);
+ }
+ catch (Exception exx) {
+ }
fail("testH5OcopyRefsDatasettosameFile: H5Pset_copy_object failed");
}
- //Perform copy function.
+ // Perform copy function.
try {
H5.H5Ocopy(H5fid, "DSREF", H5fid, "CPYREFD", ocp_plist_id, HDF5Constants.H5P_DEFAULT);
}
- catch(Exception ex) {
- try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {}
+ catch (Exception ex) {
+ try {
+ H5.H5Pclose(ocp_plist_id);
+ }
+ catch (Exception exx) {
+ }
fail("testH5OcopyRefsDatasettosameFile: H5Ocopy failed");
}
- //Open the dataset that has been copied
+ // Open the dataset that has been copied
try {
did = H5.H5Dopen(H5fid, "DSREF", HDF5Constants.H5P_DEFAULT);
assertTrue("testH5OcopyRefsDatasettosameFile.H5Dopen: ", did >= 0);
}
catch (Exception e) {
- try {H5.H5Dclose(did);} catch (Exception exx) {}
+ try {
+ H5.H5Dclose(did);
+ }
+ catch (Exception exx) {
+ }
e.printStackTrace();
fail("testH5OcopyRefsDatasettosameFile: H5Dopen failed");
}
try {
- //Read the dataset object references in the read_data buffer.
- H5.H5Dread(did, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL,HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, read_data);
+ // Read the dataset object references in the read_data buffer.
+ H5.H5Dread(did, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, read_data);
System.arraycopy(read_data, 0, rbuf0, 0, 8);
System.arraycopy(read_data, 8, rbuf1, 0, 8);
- //Get the type of object the reference points to.
+ // Get the type of object the reference points to.
obj_type = H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_OBJECT, rbuf1);
assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET);
@@ -317,22 +387,32 @@ public class TestH5OcopyOld {
ex.printStackTrace();
}
finally {
- try {H5.H5Dclose(did);} catch (Exception ex) {}
- try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(did);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ H5.H5Pclose(ocp_plist_id);
+ }
+ catch (Exception ex) {
+ }
}
- }
-
+ }
+
@Test
- public void testH5OcopyNullRef() throws Throwable {
+ public void testH5OcopyNullRef() throws Throwable
+ {
final long _pid_ = HDF5Constants.H5P_DEFAULT;
- long sid = HDF5Constants.H5I_INVALID_HID;
- long did = HDF5Constants.H5I_INVALID_HID;
- long aid = HDF5Constants.H5I_INVALID_HID;
+ long sid = HDF5Constants.H5I_INVALID_HID;
+ long did = HDF5Constants.H5I_INVALID_HID;
+ long aid = HDF5Constants.H5I_INVALID_HID;
try {
sid = H5.H5Screate_simple(1, new long[] {1}, null);
assertTrue("testH5OcopyNullRef.H5Screate_simple: ", sid >= 0);
- did = H5.H5Dcreate(H5fid, "Dataset_with_null_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_, _pid_, _pid_);
+ did = H5.H5Dcreate(H5fid, "Dataset_with_null_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_,
+ _pid_, _pid_);
assertTrue("testH5OcopyNullRef.H5Dcreate: ", did > 0);
aid = H5.H5Acreate(did, "Null_Ref", HDF5Constants.H5T_STD_REF_OBJ, sid, _pid_, _pid_);
assertTrue("testH5OcopyNullRef.H5Acreate: ", aid > 0);
@@ -341,57 +421,74 @@ public class TestH5OcopyOld {
ex.printStackTrace();
}
finally {
- try {H5.H5Dclose(did);} catch (Exception exx) {}
- try {H5.H5Aclose(aid);} catch (Exception exx) {}
- try {H5.H5Sclose(sid);} catch (Exception exx) {}
+ try {
+ H5.H5Dclose(did);
+ }
+ catch (Exception exx) {
+ }
+ try {
+ H5.H5Aclose(aid);
+ }
+ catch (Exception exx) {
+ }
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception exx) {
+ }
}
long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
assertTrue("testH5OcopyNullRef.H5Pcreate: ", ocp_plist_id >= 0);
H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
try {
- H5.H5Ocopy(H5fid, "/Dataset_with_null_Ref", H5fid, "/Dataset_with_null_Ref_cp", ocp_plist_id, _pid_);
+ H5.H5Ocopy(H5fid, "/Dataset_with_null_Ref", H5fid, "/Dataset_with_null_Ref_cp", ocp_plist_id,
+ _pid_);
}
finally {
- try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {}
+ try {
+ H5.H5Pclose(ocp_plist_id);
+ }
+ catch (Exception exx) {
+ }
}
}
-// @Ignore because of JIRA HDF5-9547
-// @Test(expected = HDF5LibraryException.class)
-// public void testH5OcopyInvalidRef() throws Throwable {
-// final long _pid_ = HDF5Constants.H5P_DEFAULT;
-// long sid = HDF5Constants.H5I_INVALID_HID;
-// long did = HDF5Constants.H5I_INVALID_HID;
-// long aid = HDF5Constants.H5I_INVALID_HID;
-//
-// try {
-// sid = H5.H5Screate_simple(1, new long[] {1}, null);
-// assertTrue("testH5OcopyInvalidRef.H5Screate_simple: ", sid >= 0);
-// did = H5.H5Dcreate(H5fid, "Dataset_with_invalid_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_, _pid_, _pid_);
-// assertTrue("testH5OcopyInvalidRef.H5Dcreate: ", did > 0);
-// aid = H5.H5Acreate(did, "Invalid_Ref", HDF5Constants.H5T_STD_REF_OBJ, sid, _pid_, _pid_);
-// assertTrue("testH5OcopyInvalidRef.H5Acreate: ", aid > 0);
-// H5.H5Awrite(aid, HDF5Constants.H5T_STD_REF_OBJ, new long[]{-1});
-// }
-// catch (Exception ex) {
-// ex.printStackTrace();
-// }
-// finally {
-// try {H5.H5Dclose(did);} catch (Exception exx) {}
-// try {H5.H5Aclose(aid);} catch (Exception exx) {}
-// try {H5.H5Sclose(sid);} catch (Exception exx) {}
-// }
-//
-// long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
-// assertTrue("testH5OcopyInvalidRef.H5Pcreate: ", ocp_plist_id >= 0);
-// H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
-// try {
-// H5.H5Ocopy(H5fid, "/Dataset_with_invalid_Ref", H5fid, "/Dataset_with_invalid_Ref_cp", ocp_plist_id, _pid_);
-// }
-// finally {
-// try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {}
-// }
-// }
-
+ // @Ignore because of JIRA HDF5-9547
+ // @Test(expected = HDF5LibraryException.class)
+ // public void testH5OcopyInvalidRef() throws Throwable {
+ // final long _pid_ = HDF5Constants.H5P_DEFAULT;
+ // long sid = HDF5Constants.H5I_INVALID_HID;
+ // long did = HDF5Constants.H5I_INVALID_HID;
+ // long aid = HDF5Constants.H5I_INVALID_HID;
+ //
+ // try {
+ // sid = H5.H5Screate_simple(1, new long[] {1}, null);
+ // assertTrue("testH5OcopyInvalidRef.H5Screate_simple: ", sid >= 0);
+ // did = H5.H5Dcreate(H5fid, "Dataset_with_invalid_Ref", HDF5Constants.H5T_NATIVE_INT, sid,
+ // _pid_, _pid_, _pid_); assertTrue("testH5OcopyInvalidRef.H5Dcreate: ", did > 0); aid =
+ // H5.H5Acreate(did, "Invalid_Ref", HDF5Constants.H5T_STD_REF_OBJ, sid, _pid_, _pid_);
+ // assertTrue("testH5OcopyInvalidRef.H5Acreate: ", aid > 0);
+ // H5.H5Awrite(aid, HDF5Constants.H5T_STD_REF_OBJ, new long[]{-1});
+ // }
+ // catch (Exception ex) {
+ // ex.printStackTrace();
+ // }
+ // finally {
+ // try {H5.H5Dclose(did);} catch (Exception exx) {}
+ // try {H5.H5Aclose(aid);} catch (Exception exx) {}
+ // try {H5.H5Sclose(sid);} catch (Exception exx) {}
+ // }
+ //
+ // long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
+ // assertTrue("testH5OcopyInvalidRef.H5Pcreate: ", ocp_plist_id >= 0);
+ // H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG);
+ // try {
+ // H5.H5Ocopy(H5fid, "/Dataset_with_invalid_Ref", H5fid, "/Dataset_with_invalid_Ref_cp",
+ // ocp_plist_id, _pid_);
+ // }
+ // finally {
+ // try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {}
+ // }
+ // }
}
diff --git a/java/test/TestH5Ocreate.java b/java/test/TestH5Ocreate.java
index 78ea744..096abcd 100644
--- a/java/test/TestH5Ocreate.java
+++ b/java/test/TestH5Ocreate.java
@@ -21,8 +21,8 @@ import java.util.ArrayList;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.callbacks.H5O_iterate_t;
import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t;
+import hdf.hdf5lib.callbacks.H5O_iterate_t;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.structs.H5O_info_t;
@@ -35,21 +35,23 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Ocreate {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_EXTFILE = "h5ex_g_iterateO2.hdf";
- private static final String H5_FILE = "testO.h5";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
- long H5fcpl = HDF5Constants.H5I_INVALID_HID;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did1 = HDF5Constants.H5I_INVALID_HID;
- long H5did2 = HDF5Constants.H5I_INVALID_HID;
- long H5gcpl = HDF5Constants.H5I_INVALID_HID;
- long H5gid = HDF5Constants.H5I_INVALID_HID;
- long[] H5dims = { DIM_X, DIM_Y };
-
- private final void _deleteFile(String filename) {
+ private static final String H5_FILE = "testO.h5";
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
+ long H5fcpl = HDF5Constants.H5I_INVALID_HID;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did1 = HDF5Constants.H5I_INVALID_HID;
+ long H5did2 = HDF5Constants.H5I_INVALID_HID;
+ long H5gcpl = HDF5Constants.H5I_INVALID_HID;
+ long H5gid = HDF5Constants.H5I_INVALID_HID;
+ long[] H5dims = {DIM_X, DIM_Y};
+
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
@@ -62,39 +64,41 @@ public class TestH5Ocreate {
}
}
- private final long _createDataset(long fid, long dsid, String name, long dapl) {
+ private final long _createDataset(long fid, long dsid, String name, long dapl)
+ {
long did = HDF5Constants.H5I_INVALID_HID;
try {
- did = H5.H5Dcreate(fid, name,
- HDF5Constants.H5T_STD_I32BE, dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+ did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Dcreate: " + err);
}
- assertTrue("TestH5O._createDataset: ",did > 0);
+ assertTrue("TestH5O._createDataset: ", did > 0);
return did;
}
- private final long _createGroup(long fid, String name) {
+ private final long _createGroup(long fid, String name)
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
try {
H5gcpl = HDF5Constants.H5P_DEFAULT;
- gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
- H5gcpl, HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, H5gcpl, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Gcreate: " + err);
}
- assertTrue("TestH5O._createGroup: ",gid > 0);
+ assertTrue("TestH5O._createGroup: ", gid > 0);
return gid;
}
- private final void _createHardLink(long fid, long cid, String curname, long did, String dstname, long lcpl, long lapl) {
+ private final void _createHardLink(long fid, long cid, String curname, long did, String dstname,
+ long lcpl, long lapl)
+ {
boolean link_exists = false;
try {
H5.H5Lcreate_hard(cid, curname, did, dstname, lcpl, lapl);
@@ -108,7 +112,9 @@ public class TestH5Ocreate {
assertTrue("TestH5O._createHardLink ", link_exists);
}
- private final void _createSoftLink(long fid, String curname, long did, String dstname, long lcpl, long lapl) {
+ private final void _createSoftLink(long fid, String curname, long did, String dstname, long lcpl,
+ long lapl)
+ {
boolean link_exists = false;
try {
H5.H5Lcreate_soft(curname, did, dstname, lcpl, lapl);
@@ -122,7 +128,9 @@ public class TestH5Ocreate {
assertTrue("TestH5O._createSoftLink ", link_exists);
}
- private final void _createExternalLink(long fid, String ext_filename, String curname, long did, String dstname, long lcpl, long lapl) {
+ private final void _createExternalLink(long fid, String ext_filename, String curname, long did,
+ String dstname, long lcpl, long lapl)
+ {
boolean link_exists = false;
try {
H5.H5Lcreate_external(ext_filename, curname, did, dstname, lcpl, lapl);
@@ -137,64 +145,95 @@ public class TestH5Ocreate {
}
@Before
- public void createH5file()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
H5fcpl = H5.H5Pcreate(HDF5Constants.H5P_FILE_CREATE);
- H5.H5Pset_link_creation_order(H5fcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED);
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- H5fcpl, HDF5Constants.H5P_DEFAULT);
+ H5.H5Pset_link_creation_order(H5fcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED +
+ HDF5Constants.H5P_CRT_ORDER_INDEXED);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, H5fcpl, HDF5Constants.H5P_DEFAULT);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
H5did1 = _createDataset(H5fid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT);
- H5gid = _createGroup(H5fid, "/G1");
+ H5gid = _createGroup(H5fid, "/G1");
H5did2 = _createDataset(H5gid, H5dsid, "DS2", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5O.createH5file: " + err);
}
- assertTrue("TestH5O.createH5file: H5.H5Fcreate: ",H5fid > 0);
- assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ",H5dsid > 0);
- assertTrue("TestH5O.createH5file: H5.H5Gcreate: ",H5gid > 0);
+ assertTrue("TestH5O.createH5file: H5.H5Fcreate: ", H5fid > 0);
+ assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
+ assertTrue("TestH5O.createH5file: H5.H5Gcreate: ", H5gid > 0);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5gid > 0)
- try {H5.H5Gclose(H5gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(H5gid);
+ }
+ catch (Exception ex) {
+ }
if (H5gcpl > 0)
- try {H5.H5Pclose(H5gcpl);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(H5gcpl);
+ }
+ catch (Exception ex) {
+ }
if (H5did2 > 0)
- try {H5.H5Dclose(H5did2);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did2);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5did1 > 0)
- try {H5.H5Dclose(H5did1);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did1);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
if (H5fcpl > 0)
- try {H5.H5Pclose(H5fcpl);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(H5fcpl);
+ }
+ catch (Exception ex) {
+ }
_deleteFile(H5_FILE);
System.out.println();
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Ocopy_cur_not_exists() throws Throwable {
+ public void testH5Ocopy_cur_not_exists() throws Throwable
+ {
H5.H5Ocopy(H5fid, "None", H5fid, "DS1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Ocopy() {
+ public void testH5Ocopy()
+ {
try {
H5.H5Ocopy(H5fid, "DS1", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
boolean link_exists = H5.H5Lexists(H5fid, "CPY1", HDF5Constants.H5P_DEFAULT);
- assertTrue("testH5Ocopy:H5Lexists ",link_exists);
+ assertTrue("testH5Ocopy:H5Lexists ", link_exists);
}
catch (Throwable err) {
err.printStackTrace();
@@ -203,57 +242,66 @@ public class TestH5Ocreate {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Ocopy_dst_link_exists() throws Throwable {
- _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ public void testH5Ocopy_dst_link_exists() throws Throwable
+ {
+ _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Ocopy(H5fid, "CPY1", H5fid, "/G1/DS2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Oget_info_by_idx_n0_create() {
+ public void testH5Oget_info_by_idx_n0_create()
+ {
H5O_info_t obj_info = null;
try {
int order = H5.H5Pget_link_creation_order(H5fcpl);
- assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED);
+ assertTrue("creation order :" + order,
+ order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Oget_info_by_idx_n0:H5Pget_link_creation_order " + err);
}
try {
- obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
+ obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Oget_info_by_idx: " + err);
}
- assertFalse("H5Oget_info_by_idx ", obj_info==null);
- assertTrue("H5Oget_info_by_idx link type", obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
+ assertFalse("H5Oget_info_by_idx ", obj_info == null);
+ assertTrue("H5Oget_info_by_idx link type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
}
@Test
- public void testH5Oget_info_by_idx_n1_create() {
+ public void testH5Oget_info_by_idx_n1_create()
+ {
H5O_info_t obj_info = null;
try {
int order = H5.H5Pget_link_creation_order(H5fcpl);
- assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED);
+ assertTrue("creation order :" + order,
+ order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Oget_info_by_idx_n1:H5Pget_link_creation_order " + err);
}
try {
- obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 1, HDF5Constants.H5P_DEFAULT);
+ obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 1, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Oget_info_by_idx: " + err);
}
- assertFalse("H5Oget_info_by_idx ", obj_info==null);
- assertTrue("H5Oget_info_by_idx link type", obj_info.type==HDF5Constants.H5O_TYPE_GROUP);
+ assertFalse("H5Oget_info_by_idx ", obj_info == null);
+ assertTrue("H5Oget_info_by_idx link type", obj_info.type == HDF5Constants.H5O_TYPE_GROUP);
}
@Test
- public void testH5Oget_info_softlink() {
+ public void testH5Oget_info_softlink()
+ {
H5O_info_t obj_info = null;
_createSoftLink(H5fid, "/G1/DS2", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
try {
@@ -263,21 +311,24 @@ public class TestH5Ocreate {
err.printStackTrace();
fail("H5.H5Oget_info: " + err);
}
- assertFalse("H5Oget_info", obj_info==null);
- assertTrue("H5Oget_info link type", obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
+ assertFalse("H5Oget_info", obj_info == null);
+ assertTrue("H5Oget_info link type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
assertTrue("Link Object Token", obj_info.token != null);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_info_softlink_dangle() throws Throwable {
+ public void testH5Oget_info_softlink_dangle() throws Throwable
+ {
_createSoftLink(H5fid, "DS3", H5fid, "L2", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Oget_info_by_name(H5fid, "L2", HDF5Constants.H5P_DEFAULT);
}
@Test
- public void testH5Oget_info_externallink() {
+ public void testH5Oget_info_externallink()
+ {
H5O_info_t obj_info = null;
- _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "L1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
try {
obj_info = H5.H5Oget_info_by_name(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
}
@@ -285,18 +336,19 @@ public class TestH5Ocreate {
err.printStackTrace();
fail("H5.H5Oget_info: " + err);
}
- assertFalse("H5Oget_info", obj_info==null);
- assertTrue("H5Oget_info link type", obj_info.type==HDF5Constants.H5O_TYPE_NAMED_DATATYPE);
+ assertFalse("H5Oget_info", obj_info == null);
+ assertTrue("H5Oget_info link type", obj_info.type == HDF5Constants.H5O_TYPE_NAMED_DATATYPE);
assertTrue("Link Object Token", obj_info.token != null);
}
@Test
- public void testH5Olink() {
- long oid = HDF5Constants.H5I_INVALID_HID;
- H5O_info_t obj_info = null;
+ public void testH5Olink()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
+ H5O_info_t obj_info = null;
H5O_info_t dst_obj_info = null;
try {
- oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
obj_info = H5.H5Oget_info(oid);
}
catch (Throwable err) {
@@ -311,10 +363,14 @@ public class TestH5Ocreate {
err.printStackTrace();
fail("H5.H5Olink: " + err);
}
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
- assertFalse("H5Oget_info ", obj_info==null);
- assertTrue("H5Oget_info object type", obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
+ assertFalse("H5Oget_info ", obj_info == null);
+ assertTrue("H5Oget_info object type", obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
try {
dst_obj_info = H5.H5Oget_info_by_name(H5fid, "CPY1", HDF5Constants.H5P_DEFAULT);
@@ -323,29 +379,34 @@ public class TestH5Ocreate {
err.printStackTrace();
fail("H5.H5Oget_info_by_name: " + err);
}
- assertFalse("H5Oget_info ", dst_obj_info==null);
- assertTrue("H5Oget_info object type", dst_obj_info.type==HDF5Constants.H5O_TYPE_DATASET);
+ assertFalse("H5Oget_info ", dst_obj_info == null);
+ assertTrue("H5Oget_info object type", dst_obj_info.type == HDF5Constants.H5O_TYPE_DATASET);
}
@Test
- public void testH5Ovisit_create() {
+ public void testH5Ovisit_create()
+ {
try {
int order = H5.H5Pget_link_creation_order(H5fcpl);
- assertTrue("creation order :"+order, order == HDF5Constants.H5P_CRT_ORDER_TRACKED+HDF5Constants.H5P_CRT_ORDER_INDEXED);
+ assertTrue("creation order :" + order,
+ order == HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Ovisit_create:H5Pget_link_creation_order " + err);
}
- _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ _createHardLink(H5fid, H5fid, "/G1/DS2", H5fid, "CPY1", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ _createExternalLink(H5fid, H5_EXTFILE, "DT1", H5fid, "LE", HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
_createSoftLink(H5fid, "/G1/DS2", H5fid, "LS", HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
class idata {
public String link_name = null;
- public int link_type = -1;
- idata(String name, int type) {
+ public int link_type = -1;
+ idata(String name, int type)
+ {
this.link_name = name;
this.link_type = type;
}
@@ -355,7 +416,8 @@ public class TestH5Ocreate {
}
H5O_iterate_opdata_t iter_data = new H5O_iter_data();
class H5O_iter_callback implements H5O_iterate_t {
- public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) {
+ public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data)
+ {
idata id = new idata(name, info.type);
((H5O_iter_data)op_data).iterdata.add(id);
return 0;
@@ -363,23 +425,34 @@ public class TestH5Ocreate {
}
H5O_iterate_t iter_cb = new H5O_iter_callback();
try {
- H5.H5Ovisit(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, iter_cb, iter_data);
+ H5.H5Ovisit(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, iter_cb,
+ iter_data);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Ovisit: " + err);
}
assertFalse("H5Ovisit ", ((H5O_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Ovisit "+((H5O_iter_data)iter_data).iterdata.size(), ((H5O_iter_data)iter_data).iterdata.size()==4);
- assertTrue("H5Ovisit "+((idata)((H5O_iter_data)iter_data).iterdata.get(0)).link_name, ((idata)((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".")==0);
- assertTrue("H5Ovisit "+((idata)((H5O_iter_data)iter_data).iterdata.get(1)).link_name, ((idata)((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS1")==0);
- assertTrue("H5Ovisit "+((idata)((H5O_iter_data)iter_data).iterdata.get(2)).link_name, ((idata)((H5O_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1")==0);
- assertTrue("H5Ovisit "+((idata)((H5O_iter_data)iter_data).iterdata.get(3)).link_name, ((idata)((H5O_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1/DS2")==0);
+ assertTrue("H5Ovisit " + ((H5O_iter_data)iter_data).iterdata.size(),
+ ((H5O_iter_data)iter_data).iterdata.size() == 4);
+ assertTrue("H5Ovisit " + ((idata)((H5O_iter_data)iter_data).iterdata.get(0)).link_name,
+ ((idata)((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".") ==
+ 0);
+ assertTrue("H5Ovisit " + ((idata)((H5O_iter_data)iter_data).iterdata.get(1)).link_name,
+ ((idata)((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS1") ==
+ 0);
+ assertTrue("H5Ovisit " + ((idata)((H5O_iter_data)iter_data).iterdata.get(2)).link_name,
+ ((idata)((H5O_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1") ==
+ 0);
+ assertTrue(
+ "H5Ovisit " + ((idata)((H5O_iter_data)iter_data).iterdata.get(3)).link_name,
+ ((idata)((H5O_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1/DS2") == 0);
}
@Test
- public void testH5Ocomment() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Ocomment()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
String obj_comment = null;
try {
oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
@@ -397,14 +470,19 @@ public class TestH5Ocreate {
err.printStackTrace();
fail("H5.H5Oget_comment: " + err);
}
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
- assertFalse("H5Oget_comment: ", obj_comment==null);
- assertTrue("H5Oget_comment: ", obj_comment.compareTo("Test Comment")==0);
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
+ assertFalse("H5Oget_comment: ", obj_comment == null);
+ assertTrue("H5Oget_comment: ", obj_comment.compareTo("Test Comment") == 0);
}
@Test
- public void testH5Ocomment_clear() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Ocomment_clear()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
String obj_comment = null;
try {
oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
@@ -422,8 +500,8 @@ public class TestH5Ocreate {
err.printStackTrace();
fail("H5.H5Oget_comment: " + err);
}
- assertFalse("H5Oget_comment: ", obj_comment==null);
- assertTrue("H5Oget_comment: ", obj_comment.compareTo("Test Comment")==0);
+ assertFalse("H5Oget_comment: ", obj_comment == null);
+ assertTrue("H5Oget_comment: ", obj_comment.compareTo("Test Comment") == 0);
try {
H5.H5Oset_comment(oid, null);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
@@ -439,12 +517,17 @@ public class TestH5Ocreate {
err.printStackTrace();
fail("H5.H5Oget_comment: " + err);
}
- try {H5.H5Oclose(oid);} catch (Exception ex) {}
- assertTrue("H5Oget_comment: ", obj_comment==null);
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
+ assertTrue("H5Oget_comment: ", obj_comment == null);
}
@Test
- public void testH5Ocomment_by_name() {
+ public void testH5Ocomment_by_name()
+ {
String obj_comment = null;
try {
H5.H5Oset_comment_by_name(H5fid, "DS1", "Test Comment", HDF5Constants.H5P_DEFAULT);
@@ -461,12 +544,13 @@ public class TestH5Ocreate {
err.printStackTrace();
fail("H5.H5Oget_comment_by_name: " + err);
}
- assertFalse("H5Oget_comment_by_name: ", obj_comment==null);
- assertTrue("H5Oget_comment_by_name: ", obj_comment.compareTo("Test Comment")==0);
+ assertFalse("H5Oget_comment_by_name: ", obj_comment == null);
+ assertTrue("H5Oget_comment_by_name: ", obj_comment.compareTo("Test Comment") == 0);
}
@Test
- public void testH5Ocomment_by_name_clear() {
+ public void testH5Ocomment_by_name_clear()
+ {
String obj_comment = null;
try {
H5.H5Oset_comment_by_name(H5fid, "DS1", "Test Comment", HDF5Constants.H5P_DEFAULT);
@@ -483,8 +567,8 @@ public class TestH5Ocreate {
err.printStackTrace();
fail("H5.H5Oget_comment_by_name: " + err);
}
- assertFalse("H5Oget_comment_by_name: ", obj_comment==null);
- assertTrue("H5Oget_comment_by_name: ", obj_comment.compareTo("Test Comment")==0);
+ assertFalse("H5Oget_comment_by_name: ", obj_comment == null);
+ assertTrue("H5Oget_comment_by_name: ", obj_comment.compareTo("Test Comment") == 0);
try {
H5.H5Oset_comment_by_name(H5fid, "DS1", null, HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
@@ -500,19 +584,20 @@ public class TestH5Ocreate {
err.printStackTrace();
fail("H5.H5Oget_comment_by_name: " + err);
}
- assertTrue("H5Oget_comment_by_name: ", obj_comment==null);
+ assertTrue("H5Oget_comment_by_name: ", obj_comment == null);
}
@Test
- public void testH5Oinc_dec_count() {
- long oid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Oinc_dec_count()
+ {
+ long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {
- oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
+ oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
obj_info = H5.H5Oget_info(oid);
- assertFalse("testH5Oinc_dec_count: H5Oget_info ",obj_info==null);
- assertTrue("testH5Oinc_dec_count: H5Oget_info reference count",obj_info.rc==1);
+ assertFalse("testH5Oinc_dec_count: H5Oget_info ", obj_info == null);
+ assertTrue("testH5Oinc_dec_count: H5Oget_info reference count", obj_info.rc == 1);
}
catch (Throwable err) {
err.printStackTrace();
@@ -527,8 +612,8 @@ public class TestH5Ocreate {
}
try {
obj_info = H5.H5Oget_info(oid);
- assertFalse("testH5Oinc_dec_count: H5Oget_info ",obj_info==null);
- assertTrue("testH5Oinc_dec_count: H5Oget_info reference count",obj_info.rc==2);
+ assertFalse("testH5Oinc_dec_count: H5Oget_info ", obj_info == null);
+ assertTrue("testH5Oinc_dec_count: H5Oget_info reference count", obj_info.rc == 2);
}
catch (Throwable err) {
err.printStackTrace();
@@ -543,8 +628,8 @@ public class TestH5Ocreate {
}
try {
obj_info = H5.H5Oget_info(oid);
- assertFalse("testH5Oinc_dec_count: H5Oget_info ",obj_info==null);
- assertTrue("testH5Oinc_dec_count: H5Oget_info reference count",obj_info.rc==1);
+ assertFalse("testH5Oinc_dec_count: H5Oget_info ", obj_info == null);
+ assertTrue("testH5Oinc_dec_count: H5Oget_info reference count", obj_info.rc == 1);
}
catch (Throwable err) {
err.printStackTrace();
@@ -552,12 +637,17 @@ public class TestH5Ocreate {
}
}
finally {
- try{H5.H5Oclose(oid);} catch (Exception ex) {}
+ try {
+ H5.H5Oclose(oid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Ocork() {
+ public void testH5Ocork()
+ {
boolean corked = false;
// Check cork status of the group: not corked
@@ -608,5 +698,4 @@ public class TestH5Ocreate {
}
assertFalse("H5Oare_mdc_flushes_disabled: ", corked);
}
-
}
diff --git a/java/test/TestH5Oparams.java b/java/test/TestH5Oparams.java
index 5cbabe1..280e9fd 100644
--- a/java/test/TestH5Oparams.java
+++ b/java/test/TestH5Oparams.java
@@ -13,6 +13,7 @@
package test;
import static org.junit.Assert.assertTrue;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
@@ -25,177 +26,211 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Oparams {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
@Before
- public void checkOpenIDs() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void checkOpenIDs()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@After
- public void nextTestName() {
+ public void nextTestName()
+ {
System.out.println();
}
- @Test//(expected = HDF5LibraryException.class)
- public void testH5Oclose_invalid() throws Throwable {
+ @Test //(expected = HDF5LibraryException.class)
+ public void testH5Oclose_invalid() throws Throwable
+ {
long oid = H5.H5Oclose(-1);
assertTrue(oid == 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Oopen_null() throws Throwable {
+ public void testH5Oopen_null() throws Throwable
+ {
H5.H5Oopen(-1, null, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oopen_invalid() throws Throwable {
+ public void testH5Oopen_invalid() throws Throwable
+ {
H5.H5Oopen(-1, "Bogus", 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Ocopy_invalid() throws Throwable {
+ public void testH5Ocopy_invalid() throws Throwable
+ {
H5.H5Ocopy(-1, "Bogus", -1, "Bogus", -1, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Ocopy_null_current() throws Throwable {
+ public void testH5Ocopy_null_current() throws Throwable
+ {
H5.H5Ocopy(-1, null, 0, "Bogus", 0, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Ocopy_null_dest() throws Throwable {
+ public void testH5Ocopy_null_dest() throws Throwable
+ {
H5.H5Ocopy(-1, "Bogus", 0, null, 0, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_info_invalid() throws Throwable {
+ public void testH5Oget_info_invalid() throws Throwable
+ {
H5.H5Oget_info(-1, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Oget_info_by_name_null() throws Throwable {
+ public void testH5Oget_info_by_name_null() throws Throwable
+ {
H5.H5Oget_info_by_name(-1, null, 0, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_info_by_name_invalid() throws Throwable {
+ public void testH5Oget_info_by_name_invalid() throws Throwable
+ {
H5.H5Oget_info_by_name(-1, "/testH5Gcreate", 0, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_info_by_idx_invalid() throws Throwable {
+ public void testH5Oget_info_by_idx_invalid() throws Throwable
+ {
H5.H5Oget_info_by_idx(-1, "Bogus", -1, -1, -1L, 0, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Oget_info_by_idx_null() throws Throwable {
+ public void testH5Oget_info_by_idx_null() throws Throwable
+ {
H5.H5Oget_info_by_idx(-1, null, 0, 0, 0L, 0, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_native_info_invalid() throws Throwable {
+ public void testH5Oget_native_info_invalid() throws Throwable
+ {
H5.H5Oget_native_info(-1, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Oget_native_info_by_name_null() throws Throwable {
+ public void testH5Oget_native_info_by_name_null() throws Throwable
+ {
H5.H5Oget_native_info_by_name(-1, null, 0, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_native_info_by_name_invalid() throws Throwable {
+ public void testH5Oget_native_info_by_name_invalid() throws Throwable
+ {
H5.H5Oget_native_info_by_name(-1, "/testH5Gcreate", 0, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_native_info_by_idx_invalid() throws Throwable {
+ public void testH5Oget_native_info_by_idx_invalid() throws Throwable
+ {
H5.H5Oget_native_info_by_idx(-1, "Bogus", -1, -1, -1L, 0, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Oget_native_info_by_idx_null() throws Throwable {
+ public void testH5Oget_native_info_by_idx_null() throws Throwable
+ {
H5.H5Oget_native_info_by_idx(-1, null, 0, 0, 0L, 0, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Olink_invalid() throws Throwable {
+ public void testH5Olink_invalid() throws Throwable
+ {
H5.H5Olink(-1, -1, "Bogus", -1, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Olink_null_dest() throws Throwable {
+ public void testH5Olink_null_dest() throws Throwable
+ {
H5.H5Olink(-1, 0, null, 0, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Ovisit_null() throws Throwable {
+ public void testH5Ovisit_null() throws Throwable
+ {
H5.H5Ovisit(-1, -1, -1, null, null, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Ovisit_by_name_nullname() throws Throwable {
+ public void testH5Ovisit_by_name_nullname() throws Throwable
+ {
H5.H5Ovisit_by_name(-1, null, -1, -1, null, null, 0, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Ovisit_by_name_null() throws Throwable {
+ public void testH5Ovisit_by_name_null() throws Throwable
+ {
H5.H5Ovisit_by_name(-1, "Bogus", -1, -1, null, null, 0, -1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oset_comment_invalid() throws Throwable {
+ public void testH5Oset_comment_invalid() throws Throwable
+ {
H5.H5Oset_comment(-1, "Bogus");
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_comment_invalid() throws Throwable {
+ public void testH5Oget_comment_invalid() throws Throwable
+ {
H5.H5Oget_comment(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oset_comment_by_name_invalid() throws Throwable {
+ public void testH5Oset_comment_by_name_invalid() throws Throwable
+ {
H5.H5Oset_comment_by_name(-1, "Bogus", null, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Oset_comment_by_name_null() throws Throwable {
+ public void testH5Oset_comment_by_name_null() throws Throwable
+ {
H5.H5Oset_comment_by_name(-1, null, null, -1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oget_comment_by_name_invalid() throws Throwable {
+ public void testH5Oget_comment_by_name_invalid() throws Throwable
+ {
H5.H5Oget_comment_by_name(-1, "Bogus", -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Oget_comment_by_name_null() throws Throwable {
+ public void testH5Oget_comment_by_name_null() throws Throwable
+ {
H5.H5Oget_comment_by_name(-1, null, -1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oflush_invalid() throws Throwable {
+ public void testH5Oflush_invalid() throws Throwable
+ {
H5.H5Oflush(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Orefresh_invalid() throws Throwable {
+ public void testH5Orefresh_invalid() throws Throwable
+ {
H5.H5Orefresh(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Odisable_mdc_flushes() throws Throwable {
+ public void testH5Odisable_mdc_flushes() throws Throwable
+ {
H5.H5Odisable_mdc_flushes(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oenable_mdc_flushes() throws Throwable {
+ public void testH5Oenable_mdc_flushes() throws Throwable
+ {
H5.H5Oenable_mdc_flushes(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Oare_mdc_flushes_disabled() throws Throwable {
+ public void testH5Oare_mdc_flushes_disabled() throws Throwable
+ {
H5.H5Oare_mdc_flushes_disabled(-1);
}
-
}
diff --git a/java/test/TestH5P.java b/java/test/TestH5P.java
index 6ae93d9..0571e3f 100644
--- a/java/test/TestH5P.java
+++ b/java/test/TestH5P.java
@@ -34,40 +34,47 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5P {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_FILE = "testP.h5";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
- long[] H5dims = { DIM_X, DIM_Y };
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
- long lapl_id = HDF5Constants.H5I_INVALID_HID;
- long fapl_id = HDF5Constants.H5I_INVALID_HID;
- long fcpl_id = HDF5Constants.H5I_INVALID_HID;
- long ocpl_id = HDF5Constants.H5I_INVALID_HID;
- long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
- long lcpl_id = HDF5Constants.H5I_INVALID_HID;
- long plapl_id = HDF5Constants.H5I_INVALID_HID;
- long plist_id = HDF5Constants.H5I_INVALID_HID;
- long gapl_id = HDF5Constants.H5I_INVALID_HID;
- long gcpl_id = HDF5Constants.H5I_INVALID_HID;
- long acpl_id = HDF5Constants.H5I_INVALID_HID;
-
- private final void _deleteFile(String filename) {
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
+ long[] H5dims = {DIM_X, DIM_Y};
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+ long lapl_id = HDF5Constants.H5I_INVALID_HID;
+ long fapl_id = HDF5Constants.H5I_INVALID_HID;
+ long fcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long ocpl_id = HDF5Constants.H5I_INVALID_HID;
+ long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
+ long lcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long plapl_id = HDF5Constants.H5I_INVALID_HID;
+ long plist_id = HDF5Constants.H5I_INVALID_HID;
+ long gapl_id = HDF5Constants.H5I_INVALID_HID;
+ long gcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long acpl_id = HDF5Constants.H5I_INVALID_HID;
+
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
- private final long _createDataset(long fid, long dsid, String name, long dapl) {
+ private final long _createDataset(long fid, long dsid, String name, long dapl)
+ {
long did = HDF5Constants.H5I_INVALID_HID;
try {
- did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+ did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -78,12 +85,12 @@ public class TestH5P {
return did;
}
- private final void _createH5File(long fcpl, long fapl) {
+ private final void _createH5File(long fcpl, long fapl)
+ {
try {
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- fcpl, fapl);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, fcpl, fapl);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
- H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
+ H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -101,28 +108,26 @@ public class TestH5P {
}
}
- public void deleteH5file() throws HDF5LibraryException {
- _deleteFile(H5_FILE);
- }
+ public void deleteH5file() throws HDF5LibraryException { _deleteFile(H5_FILE); }
@Before
- public void createH5fileProperties()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5fileProperties() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
- lapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
- fapl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS);
- fcpl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_CREATE);
- ocpl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE);
+ lapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
+ fapl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS);
+ fcpl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_CREATE);
+ ocpl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE);
ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY);
- lcpl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_CREATE);
- plapl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_ACCESS);
- plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
- gapl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_ACCESS);
- gcpl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE);
- acpl_id = H5.H5Pcreate(HDF5Constants.H5P_ATTRIBUTE_CREATE);
+ lcpl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_CREATE);
+ plapl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_ACCESS);
+ plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
+ gapl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_ACCESS);
+ gcpl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE);
+ acpl_id = H5.H5Pcreate(HDF5Constants.H5P_ATTRIBUTE_CREATE);
}
catch (Throwable err) {
err.printStackTrace();
@@ -134,51 +139,109 @@ public class TestH5P {
assertTrue(ocpl_id > 0);
assertTrue(ocp_plist_id > 0);
assertTrue(lcpl_id > 0);
- assertTrue(plapl_id>0);
+ assertTrue(plapl_id > 0);
assertTrue(plist_id > 0);
assertTrue(gapl_id > 0);
- assertTrue(gcpl_id >0);
- assertTrue(acpl_id >0);
+ assertTrue(gcpl_id > 0);
+ assertTrue(acpl_id > 0);
}
@After
- public void deleteH5fileProperties() throws HDF5LibraryException {
- if (lapl_id >0)
- try {H5.H5Pclose(lapl_id);} catch (Exception ex) {}
- if (fapl_id >0)
- try {H5.H5Pclose(fapl_id);} catch (Exception ex) {}
- if (fcpl_id >0)
- try {H5.H5Pclose(fcpl_id);} catch (Exception ex) {}
- if (ocpl_id >0)
- try {H5.H5Pclose(ocpl_id);} catch (Exception ex) {}
- if (ocp_plist_id >0)
- try {H5.H5Pclose(ocp_plist_id);} catch (Exception ex) {}
- if (lcpl_id >0)
- try {H5.H5Pclose(lcpl_id);} catch (Exception ex) {}
- if (plapl_id >0)
- try {H5.H5Pclose(plapl_id);} catch (Exception ex) {}
- if (plist_id >0)
- try {H5.H5Pclose(plist_id);} catch (Exception ex) {}
- if (gapl_id >0)
- try {H5.H5Pclose(gapl_id);} catch (Exception ex) {}
- if (gcpl_id >0)
- try {H5.H5Pclose(gcpl_id);} catch (Exception ex) {}
- if (acpl_id >0)
- try {H5.H5Pclose(acpl_id);} catch (Exception ex) {}
+ public void deleteH5fileProperties() throws HDF5LibraryException
+ {
+ if (lapl_id > 0)
+ try {
+ H5.H5Pclose(lapl_id);
+ }
+ catch (Exception ex) {
+ }
+ if (fapl_id > 0)
+ try {
+ H5.H5Pclose(fapl_id);
+ }
+ catch (Exception ex) {
+ }
+ if (fcpl_id > 0)
+ try {
+ H5.H5Pclose(fcpl_id);
+ }
+ catch (Exception ex) {
+ }
+ if (ocpl_id > 0)
+ try {
+ H5.H5Pclose(ocpl_id);
+ }
+ catch (Exception ex) {
+ }
+ if (ocp_plist_id > 0)
+ try {
+ H5.H5Pclose(ocp_plist_id);
+ }
+ catch (Exception ex) {
+ }
+ if (lcpl_id > 0)
+ try {
+ H5.H5Pclose(lcpl_id);
+ }
+ catch (Exception ex) {
+ }
+ if (plapl_id > 0)
+ try {
+ H5.H5Pclose(plapl_id);
+ }
+ catch (Exception ex) {
+ }
+ if (plist_id > 0)
+ try {
+ H5.H5Pclose(plist_id);
+ }
+ catch (Exception ex) {
+ }
+ if (gapl_id > 0)
+ try {
+ H5.H5Pclose(gapl_id);
+ }
+ catch (Exception ex) {
+ }
+ if (gcpl_id > 0)
+ try {
+ H5.H5Pclose(gcpl_id);
+ }
+ catch (Exception ex) {
+ }
+ if (acpl_id > 0)
+ try {
+ H5.H5Pclose(acpl_id);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
System.out.println();
}
@Test
- public void testH5Pget_nlinks() {
+ public void testH5Pget_nlinks()
+ {
long nlinks = -1;
try {
- nlinks = (long) H5.H5Pget_nlinks(lapl_id);
+ nlinks = (long)H5.H5Pget_nlinks(lapl_id);
}
catch (Throwable err) {
err.printStackTrace();
@@ -190,12 +253,13 @@ public class TestH5P {
}
@Test
- public void testH5Pset_nlinks() {
+ public void testH5Pset_nlinks()
+ {
long nlinks = 20;
int ret_val = -1;
try {
ret_val = H5.H5Pset_nlinks(lapl_id, nlinks);
- nlinks = (long) H5.H5Pget_nlinks(lapl_id);
+ nlinks = (long)H5.H5Pget_nlinks(lapl_id);
}
catch (Throwable err) {
err.printStackTrace();
@@ -207,17 +271,22 @@ public class TestH5P {
}
@Test(expected = HDF5FunctionArgumentException.class)
- public void testH5Pset_libver_bounds_invalidlow() throws Throwable {
- H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST+1, HDF5Constants.H5F_LIBVER_LATEST);
+ public void testH5Pset_libver_bounds_invalidlow() throws Throwable
+ {
+ H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST + 1,
+ HDF5Constants.H5F_LIBVER_LATEST);
}
@Test(expected = HDF5FunctionArgumentException.class)
- public void testH5Pset_libver_bounds_invalidhigh() throws Throwable {
- H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST, HDF5Constants.H5F_LIBVER_LATEST+1);
+ public void testH5Pset_libver_bounds_invalidhigh() throws Throwable
+ {
+ H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST,
+ HDF5Constants.H5F_LIBVER_LATEST + 1);
}
@Test
- public void testH5Pget_link_creation_order() {
+ public void testH5Pget_link_creation_order()
+ {
int crt_order_flags = 0;
try {
crt_order_flags = H5.H5Pget_link_creation_order(fcpl_id);
@@ -230,47 +299,51 @@ public class TestH5P {
}
@Test
- public void testH5Pset_link_creation_order_trackedPLUSindexed() {
- int ret_val = -1;
+ public void testH5Pset_link_creation_order_trackedPLUSindexed()
+ {
+ int ret_val = -1;
int crt_order_flags = HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED;
- int crtorderflags = 0;
+ int crtorderflags = 0;
try {
- ret_val = H5.H5Pset_link_creation_order(fcpl_id, crt_order_flags);
+ ret_val = H5.H5Pset_link_creation_order(fcpl_id, crt_order_flags);
crtorderflags = H5.H5Pget_link_creation_order(fcpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_link_creation_order: " + err);
}
- assertTrue("testH5Pset_link_creation_order_trackedPLUSindexed",ret_val >= 0);
+ assertTrue("testH5Pset_link_creation_order_trackedPLUSindexed", ret_val >= 0);
assertEquals(crt_order_flags, crtorderflags);
}
@Test
- public void testH5Pset_link_creation_order_tracked() {
- int ret_val = -1;
+ public void testH5Pset_link_creation_order_tracked()
+ {
+ int ret_val = -1;
int crtorderflags = 0;
try {
- ret_val = H5.H5Pset_link_creation_order(fcpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED);
+ ret_val = H5.H5Pset_link_creation_order(fcpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED);
crtorderflags = H5.H5Pget_link_creation_order(fcpl_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_link_creation_order: " + err);
}
- assertTrue("testH5Pset_link_creation_order_tracked",ret_val >= 0);
+ assertTrue("testH5Pset_link_creation_order_tracked", ret_val >= 0);
assertEquals(HDF5Constants.H5P_CRT_ORDER_TRACKED, crtorderflags);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Pset_link_creation_order_invalidvalue() throws Throwable {
+ public void testH5Pset_link_creation_order_invalidvalue() throws Throwable
+ {
H5.H5Pset_link_creation_order(fcpl_id, HDF5Constants.H5P_CRT_ORDER_INDEXED);
}
@Test
- public void testH5Pget_attr_creation_order() {
+ public void testH5Pget_attr_creation_order()
+ {
int crt_order_flags = 0;
try {
@@ -284,13 +357,14 @@ public class TestH5P {
}
@Test
- public void testH5Pset_attr_creation_order_trackedPLUSindexed() {
- int ret_val = -1;
+ public void testH5Pset_attr_creation_order_trackedPLUSindexed()
+ {
+ int ret_val = -1;
int crt_order_flags = HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED;
- int crtorderflags = 0;
+ int crtorderflags = 0;
try {
- ret_val = H5.H5Pset_attr_creation_order(ocpl_id, crt_order_flags);
+ ret_val = H5.H5Pset_attr_creation_order(ocpl_id, crt_order_flags);
crtorderflags = H5.H5Pget_attr_creation_order(ocpl_id);
}
catch (Throwable err) {
@@ -302,12 +376,13 @@ public class TestH5P {
}
@Test
- public void testH5Pset_attr_creation_order_tracked() {
- int ret_val = -1;
+ public void testH5Pset_attr_creation_order_tracked()
+ {
+ int ret_val = -1;
int crtorderflags = 0;
try {
- ret_val = H5.H5Pset_attr_creation_order(ocpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED);
+ ret_val = H5.H5Pset_attr_creation_order(ocpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED);
crtorderflags = H5.H5Pget_attr_creation_order(ocpl_id);
}
catch (Throwable err) {
@@ -319,12 +394,14 @@ public class TestH5P {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Pset_attr_creation_order_invalidvalue() throws Throwable {
+ public void testH5Pset_attr_creation_order_invalidvalue() throws Throwable
+ {
H5.H5Pset_attr_creation_order(ocpl_id, HDF5Constants.H5P_CRT_ORDER_INDEXED);
}
@Test
- public void testH5Pset_copy_object() {
+ public void testH5Pset_copy_object()
+ {
int cpy_option = -1;
@@ -350,12 +427,14 @@ public class TestH5P {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Pset_copy_object_invalidobject() throws Throwable {
+ public void testH5Pset_copy_object_invalidobject() throws Throwable
+ {
H5.H5Pset_copy_object(HDF5Constants.H5P_DEFAULT, HDF5Constants.H5O_COPY_SHALLOW_HIERARCHY_FLAG);
}
@Test
- public void testH5Pset_create_intermediate_group() {
+ public void testH5Pset_create_intermediate_group()
+ {
int ret_val = -1;
try {
@@ -365,16 +444,18 @@ public class TestH5P {
err.printStackTrace();
fail("H5Pset_create_intermediate_group: " + err);
}
- assertTrue(ret_val>=0);
+ assertTrue(ret_val >= 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Pset_create_intermediate_group_invalidobject() throws Throwable {
+ public void testH5Pset_create_intermediate_group_invalidobject() throws Throwable
+ {
H5.H5Pset_create_intermediate_group(ocp_plist_id, true);
}
@Test
- public void testH5Pget_create_intermediate_group() {
+ public void testH5Pget_create_intermediate_group()
+ {
boolean flag = false;
try {
H5.H5Pset_create_intermediate_group(lcpl_id, true);
@@ -388,7 +469,8 @@ public class TestH5P {
}
@Test
- public void testH5Pget_create_intermediate_group_notcreated() {
+ public void testH5Pget_create_intermediate_group_notcreated()
+ {
boolean flag = true;
try {
flag = H5.H5Pget_create_intermediate_group(lcpl_id);
@@ -401,43 +483,48 @@ public class TestH5P {
}
@Test
- public void testH5Pset_data_transform() {
+ public void testH5Pset_data_transform()
+ {
String expression = "(5/9.0)*(x-32)";
- int ret_val = -1;
+ int ret_val = -1;
try {
- ret_val= H5.H5Pset_data_transform(plist_id, expression);
+ ret_val = H5.H5Pset_data_transform(plist_id, expression);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_data_transform: " + err);
}
- assertTrue(ret_val>=0);
+ assertTrue(ret_val >= 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Pset_data_transform_NullExpression() throws Throwable {
+ public void testH5Pset_data_transform_NullExpression() throws Throwable
+ {
H5.H5Pset_data_transform(plist_id, null);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Pset_data_transform_InvalidExpression1() throws Throwable {
+ public void testH5Pset_data_transform_InvalidExpression1() throws Throwable
+ {
H5.H5Pset_data_transform(plist_id, "");
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Pset_data_transform_InvalidExpression2() throws Throwable {
+ public void testH5Pset_data_transform_InvalidExpression2() throws Throwable
+ {
H5.H5Pset_data_transform(plist_id, "hello");
}
@Test
- public void testH5Pget_data_transform() {
+ public void testH5Pget_data_transform()
+ {
String expression = "(5/9.0)*(x-32)";
- String [] express = {""};
+ String[] express = {""};
long express_size = 0;
- long size = 20;
+ long size = 20;
try {
H5.H5Pset_data_transform(plist_id, expression);
@@ -447,25 +534,28 @@ public class TestH5P {
err.printStackTrace();
fail("H5Pget_data_transform: " + err);
}
- assertTrue(express_size>=0);
+ assertTrue(express_size >= 0);
assertTrue("The data transform expression: ", expression.equals(express[0]));
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Pget_data_transform_ExpressionNotSet() throws Throwable {
- String [] express = {""};
+ public void testH5Pget_data_transform_ExpressionNotSet() throws Throwable
+ {
+ String[] express = {""};
H5.H5Pget_data_transform(plist_id, express, 20);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Pget_data_transform_IllegalSize() throws Throwable {
- String [] express = {""};
+ public void testH5Pget_data_transform_IllegalSize() throws Throwable
+ {
+ String[] express = {""};
H5.H5Pset_data_transform(plist_id, "(5/9.0)*(x-32)");
H5.H5Pget_data_transform(plist_id, express, 0);
}
@Test
- public void testH5Pget_elink_acc_flags() {
+ public void testH5Pget_elink_acc_flags()
+ {
int get_flags = -1;
try {
@@ -480,12 +570,13 @@ public class TestH5P {
}
@Test
- public void testH5Pset_elink_acc_flags() {
+ public void testH5Pset_elink_acc_flags()
+ {
int get_flags = -1;
- int ret_val = -1;
+ int ret_val = -1;
try {
- ret_val = H5.H5Pset_elink_acc_flags(lapl_id, HDF5Constants.H5F_ACC_RDWR);
+ ret_val = H5.H5Pset_elink_acc_flags(lapl_id, HDF5Constants.H5F_ACC_RDWR);
get_flags = H5.H5Pget_elink_acc_flags(lapl_id);
}
catch (Throwable err) {
@@ -497,21 +588,24 @@ public class TestH5P {
}
@Test(expected = HDF5FunctionArgumentException.class)
- public void testH5Pset_elink_acc_flags_InvalidFlag1() throws Throwable {
+ public void testH5Pset_elink_acc_flags_InvalidFlag1() throws Throwable
+ {
H5.H5Pset_elink_acc_flags(lapl_id, HDF5Constants.H5F_ACC_TRUNC);
}
@Test(expected = HDF5FunctionArgumentException.class)
- public void testH5Pset_elink_acc_flags_InvalidFlag2() throws Throwable {
+ public void testH5Pset_elink_acc_flags_InvalidFlag2() throws Throwable
+ {
H5.H5Pset_elink_acc_flags(lapl_id, -1);
}
@Test
- public void testH5Pset_link_phase_change() {
+ public void testH5Pset_link_phase_change()
+ {
int ret_val = -1;
try {
- ret_val = H5.H5Pset_link_phase_change(fcpl_id , 2, 2);
+ ret_val = H5.H5Pset_link_phase_change(fcpl_id, 2, 2);
}
catch (Throwable err) {
err.printStackTrace();
@@ -521,17 +615,20 @@ public class TestH5P {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Pset_link_phase_change_Highmax_Compact() throws Throwable {
- H5.H5Pset_link_phase_change(fcpl_id , 70000000, 3);
+ public void testH5Pset_link_phase_change_Highmax_Compact() throws Throwable
+ {
+ H5.H5Pset_link_phase_change(fcpl_id, 70000000, 3);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Pset_link_phase_change_max_compactLESSTHANmin_dense() throws Throwable {
- H5.H5Pset_link_phase_change(fcpl_id , 5, 6);
+ public void testH5Pset_link_phase_change_max_compactLESSTHANmin_dense() throws Throwable
+ {
+ H5.H5Pset_link_phase_change(fcpl_id, 5, 6);
}
@Test
- public void testH5Pget_link_phase_change() {
+ public void testH5Pget_link_phase_change()
+ {
int ret_val = -1;
int[] links = new int[2];
@@ -548,10 +645,11 @@ public class TestH5P {
}
@Test
- public void testH5Pget_link_phase_change_EqualsSet() {
+ public void testH5Pget_link_phase_change_EqualsSet()
+ {
int[] links = new int[2];
try {
- H5.H5Pset_link_phase_change(fcpl_id , 10, 7);
+ H5.H5Pset_link_phase_change(fcpl_id, 10, 7);
H5.H5Pget_link_phase_change(fcpl_id, links);
}
catch (Throwable err) {
@@ -563,13 +661,15 @@ public class TestH5P {
}
@Test(expected = NullPointerException.class)
- public void testH5Pget_link_phase_change_Null() throws Throwable {
+ public void testH5Pget_link_phase_change_Null() throws Throwable
+ {
H5.H5Pget_link_phase_change(fcpl_id, null);
}
@Test
- public void testH5Pget_attr_phase_change() {
- int ret_val = -1;
+ public void testH5Pget_attr_phase_change()
+ {
+ int ret_val = -1;
int[] attributes = new int[2];
try {
@@ -580,7 +680,8 @@ public class TestH5P {
fail("H5Pget_attr_phase_change: " + err);
}
assertTrue("testH5Pget_attr_phase_change", ret_val >= 0);
- assertEquals("Default value of the max. no. of attributes stored in compact storage", 8, attributes[0]);
+ assertEquals("Default value of the max. no. of attributes stored in compact storage", 8,
+ attributes[0]);
assertEquals("Default value of the min. no. of attributes stored in dense storage", 6, attributes[1]);
try {
H5.H5Pset_attr_phase_change(ocpl_id, 9, 5);
@@ -597,14 +698,16 @@ public class TestH5P {
fail("H5Pget_attr_phase_change: " + err);
}
assertTrue("testH5Pget_attr_phase_change", ret_val >= 0);
- assertEquals("Default value of the max. no. of attributes stored in compact storage", 9, attributes[0]);
+ assertEquals("Default value of the max. no. of attributes stored in compact storage", 9,
+ attributes[0]);
assertEquals("Default value of the min. no. of attributes stored in dense storage", 5, attributes[1]);
}
@Test
- public void testH5Pget_shared_mesg_phase_change() {
+ public void testH5Pget_shared_mesg_phase_change()
+ {
int ret_val = -1;
- int[] size = new int[2];
+ int[] size = new int[2];
try {
ret_val = H5.H5Pget_shared_mesg_phase_change(fcpl_id, size);
@@ -617,11 +720,12 @@ public class TestH5P {
}
@Test
- public void testH5Pget_shared_mesg_phase_change_EqualsSET() {
+ public void testH5Pget_shared_mesg_phase_change_EqualsSET()
+ {
int[] size = new int[2];
try {
- H5.H5Pset_shared_mesg_phase_change(fcpl_id,50, 40);
+ H5.H5Pset_shared_mesg_phase_change(fcpl_id, 50, 40);
H5.H5Pget_shared_mesg_phase_change(fcpl_id, size);
}
catch (Throwable err) {
@@ -633,11 +737,12 @@ public class TestH5P {
}
@Test
- public void testH5Pset_shared_mesg_phase_change() {
+ public void testH5Pset_shared_mesg_phase_change()
+ {
int ret_val = -1;
try {
- ret_val = H5.H5Pset_shared_mesg_phase_change(fcpl_id,2, 1);
+ ret_val = H5.H5Pset_shared_mesg_phase_change(fcpl_id, 2, 1);
}
catch (Throwable err) {
err.printStackTrace();
@@ -647,22 +752,26 @@ public class TestH5P {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5PH5Pset_shared_mesg_phase_change_HighMaxlistValue() throws Throwable {
+ public void testH5PH5Pset_shared_mesg_phase_change_HighMaxlistValue() throws Throwable
+ {
H5.H5Pset_shared_mesg_phase_change(fcpl_id, 5001, 4000);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5PH5Pset_shared_mesg_phase_change_HighMinbtreeValue() throws Throwable {
+ public void testH5PH5Pset_shared_mesg_phase_change_HighMinbtreeValue() throws Throwable
+ {
H5.H5Pset_shared_mesg_phase_change(fcpl_id, 5000, 5001);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5PH5Pset_shared_mesg_phase_change_MinbtreeGreaterThanMaxlist() throws Throwable {
- H5.H5Pset_link_phase_change(fcpl_id , 3, 7);
+ public void testH5PH5Pset_shared_mesg_phase_change_MinbtreeGreaterThanMaxlist() throws Throwable
+ {
+ H5.H5Pset_link_phase_change(fcpl_id, 3, 7);
}
@Test
- public void testH5Pget_shared_mesg_nindexes() {
+ public void testH5Pget_shared_mesg_nindexes()
+ {
int nindexes = -1;
try {
@@ -676,12 +785,13 @@ public class TestH5P {
}
@Test
- public void testH5Pset_shared_mesg_nindexes() {
+ public void testH5Pset_shared_mesg_nindexes()
+ {
int nindexes = -1;
- int ret_val = -1;
+ int ret_val = -1;
try {
- ret_val = H5.H5Pset_shared_mesg_nindexes(fcpl_id, 7);
+ ret_val = H5.H5Pset_shared_mesg_nindexes(fcpl_id, 7);
nindexes = H5.H5Pget_shared_mesg_nindexes(fcpl_id);
}
catch (Throwable err) {
@@ -689,21 +799,23 @@ public class TestH5P {
fail("H5Pset_shared_mesg_nindexes: " + err);
}
assertTrue("H5Pset_shared_mesg_nindexes", ret_val >= 0);
- assertEquals("Value of nindexes is equal to value set",7 ,nindexes);
+ assertEquals("Value of nindexes is equal to value set", 7, nindexes);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Pset_shared_mesg_nindexes_InvalidHIGHnindexes()throws Throwable {
+ public void testH5Pset_shared_mesg_nindexes_InvalidHIGHnindexes() throws Throwable
+ {
H5.H5Pset_shared_mesg_nindexes(fcpl_id, 9);
}
@Test
- public void testH5Pset_shared_mesg_index() {
+ public void testH5Pset_shared_mesg_index()
+ {
int ret_val = -1;
try {
H5.H5Pset_shared_mesg_nindexes(fcpl_id, 2);
- ret_val = H5.H5Pset_shared_mesg_index(fcpl_id, 0,HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10);
+ ret_val = H5.H5Pset_shared_mesg_index(fcpl_id, 0, HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10);
}
catch (Throwable err) {
err.printStackTrace();
@@ -713,24 +825,27 @@ public class TestH5P {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Pset_shared_mesg_index_Invalid_indexnum() throws Throwable {
- H5.H5Pset_shared_mesg_index(fcpl_id, 2,HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10);
+ public void testH5Pset_shared_mesg_index_Invalid_indexnum() throws Throwable
+ {
+ H5.H5Pset_shared_mesg_index(fcpl_id, 2, HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Pset_shared_mesg_index_InvalidFlag() throws Throwable {
+ public void testH5Pset_shared_mesg_index_InvalidFlag() throws Throwable
+ {
H5.H5Pset_shared_mesg_nindexes(fcpl_id, 7);
- H5.H5Pset_shared_mesg_index(fcpl_id, 2,HDF5Constants.H5O_SHMESG_ALL_FLAG + 1, 10);
+ H5.H5Pset_shared_mesg_index(fcpl_id, 2, HDF5Constants.H5O_SHMESG_ALL_FLAG + 1, 10);
}
@Test
- public void testH5Pget_shared_mesg_index() {
+ public void testH5Pget_shared_mesg_index()
+ {
- int ret_val = -1;
+ int ret_val = -1;
int[] mesg_info = new int[2];
try {
H5.H5Pset_shared_mesg_nindexes(fcpl_id, 2);
- H5.H5Pset_shared_mesg_index(fcpl_id, 0,HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10);
+ H5.H5Pset_shared_mesg_index(fcpl_id, 0, HDF5Constants.H5O_SHMESG_ATTR_FLAG, 10);
ret_val = H5.H5Pget_shared_mesg_index(fcpl_id, 0, mesg_info);
}
catch (Throwable err) {
@@ -743,13 +858,15 @@ public class TestH5P {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Pget_shared_mesg_index_Invalid_indexnum() throws Throwable {
+ public void testH5Pget_shared_mesg_index_Invalid_indexnum() throws Throwable
+ {
int[] mesg_info = new int[2];
H5.H5Pget_shared_mesg_index(fcpl_id, 0, mesg_info);
}
@Test
- public void testH5Pset_local_heap_size_hint() {
+ public void testH5Pset_local_heap_size_hint()
+ {
int ret_val = -1;
try {
ret_val = H5.H5Pset_local_heap_size_hint(gcpl_id, 0);
@@ -762,7 +879,8 @@ public class TestH5P {
}
@Test
- public void testH5Pget_local_heap_size_hint() {
+ public void testH5Pget_local_heap_size_hint()
+ {
long size_hint = -1;
try {
size_hint = H5.H5Pget_local_heap_size_hint(gcpl_id);
@@ -775,7 +893,8 @@ public class TestH5P {
}
@Test
- public void testH5Pset_nbit() {
+ public void testH5Pset_nbit()
+ {
int ret_val = -1;
try {
ret_val = H5.H5Pset_nbit(ocpl_id);
@@ -788,9 +907,10 @@ public class TestH5P {
}
@Test
- public void testH5Pset_scaleoffset() {
- int ret_val = -1;
- int scale_type = HDF5Constants.H5Z_SO_FLOAT_DSCALE;
+ public void testH5Pset_scaleoffset()
+ {
+ int ret_val = -1;
+ int scale_type = HDF5Constants.H5Z_SO_FLOAT_DSCALE;
int scale_factor = HDF5Constants.H5Z_SO_INT_MINBITS_DEFAULT;
try {
ret_val = H5.H5Pset_scaleoffset(ocpl_id, scale_type, scale_factor);
@@ -803,20 +923,23 @@ public class TestH5P {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Pset_scaleoffset_Invalidscale_type() throws Throwable {
+ public void testH5Pset_scaleoffset_Invalidscale_type() throws Throwable
+ {
H5.H5Pset_scaleoffset(ocpl_id, 3, 1);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Pset_scaleoffset_Invalidscale_factor() throws Throwable {
+ public void testH5Pset_scaleoffset_Invalidscale_factor() throws Throwable
+ {
H5.H5Pset_scaleoffset(ocpl_id, HDF5Constants.H5Z_SO_INT, -1);
}
@Test
- public void testH5Pset_est_link_info() {
+ public void testH5Pset_est_link_info()
+ {
int ret_val = -1;
try {
- ret_val = H5.H5Pset_est_link_info(gcpl_id, 0,10);
+ ret_val = H5.H5Pset_est_link_info(gcpl_id, 0, 10);
}
catch (Throwable err) {
err.printStackTrace();
@@ -826,13 +949,15 @@ public class TestH5P {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Pset_est_link_info_InvalidValues() throws Throwable {
- H5.H5Pset_est_link_info(gcpl_id, 100000,10);
+ public void testH5Pset_est_link_info_InvalidValues() throws Throwable
+ {
+ H5.H5Pset_est_link_info(gcpl_id, 100000, 10);
}
@Test
- public void testH5Pget_est_link_info() {
- int ret_val = -1;
+ public void testH5Pget_est_link_info()
+ {
+ int ret_val = -1;
int[] link_info = new int[2];
try {
ret_val = H5.H5Pget_est_link_info(gcpl_id, link_info);
@@ -845,8 +970,9 @@ public class TestH5P {
}
@Test
- public void testH5Pset_elink_prefix() {
- int ret_val = -1;
+ public void testH5Pset_elink_prefix()
+ {
+ int ret_val = -1;
String prefix = "tmp";
try {
ret_val = H5.H5Pset_elink_prefix(plapl_id, prefix);
@@ -859,14 +985,16 @@ public class TestH5P {
}
@Test(expected = NullPointerException.class)
- public void testH5Pset_elink_prefix_null() throws Throwable{
+ public void testH5Pset_elink_prefix_null() throws Throwable
+ {
H5.H5Pset_elink_prefix(plapl_id, null);
}
@Test
- public void testH5Pget_elink_prefix() {
- String prefix = "tmp";
- String[] pre = {""};
+ public void testH5Pget_elink_prefix()
+ {
+ String prefix = "tmp";
+ String[] pre = {""};
long prefix_size = 0;
try {
@@ -877,22 +1005,25 @@ public class TestH5P {
err.printStackTrace();
fail("H5Pget_elink_prefix: " + err);
}
- assertTrue(prefix_size>=0);
+ assertTrue(prefix_size >= 0);
assertTrue("The prefix: ", prefix.equals(pre[0]));
}
@Test(expected = NullPointerException.class)
- public void testH5Pget_elink_prefix_null() throws Throwable {
+ public void testH5Pget_elink_prefix_null() throws Throwable
+ {
H5.H5Pget_elink_prefix(plapl_id, null);
}
@Test(expected = NullPointerException.class)
- public void testH5Pget_userblock_null() throws Throwable {
+ public void testH5Pget_userblock_null() throws Throwable
+ {
H5.H5Pget_userblock(fcpl_id, null);
}
@Test
- public void testH5P_userblock() {
+ public void testH5P_userblock()
+ {
long[] size = {0};
try {
@@ -903,13 +1034,13 @@ public class TestH5P {
H5.H5Pclose(fcpl_id);
/* Get the file's dataset creation property list */
- fcpl_id = H5.H5Fget_create_plist(H5fid);
+ fcpl_id = H5.H5Fget_create_plist(H5fid);
/* Get the file's version information */
H5F_info2_t finfo = H5.H5Fget_info(H5fid);
- assertTrue("super block version: "+finfo.super_version, finfo.super_version == 0);
- assertTrue("free-space manager version: "+finfo.free_version, finfo.free_version == 0);
- assertTrue("shared object header version: "+finfo.sohm_version, finfo.sohm_version == 0);
+ assertTrue("super block version: " + finfo.super_version, finfo.super_version == 0);
+ assertTrue("free-space manager version: " + finfo.free_version, finfo.free_version == 0);
+ assertTrue("shared object header version: " + finfo.sohm_version, finfo.sohm_version == 0);
H5.H5Pget_userblock(fcpl_id, size);
deleteH5file();
}
@@ -917,17 +1048,19 @@ public class TestH5P {
err.printStackTrace();
fail("H5Pget_userblock: " + err);
}
- assertTrue("user block size: "+size[0], size[0] == 1024);
+ assertTrue("user block size: " + size[0], size[0] == 1024);
}
@Test(expected = NullPointerException.class)
- public void testH5Pget_sizes_null() throws Throwable {
+ public void testH5Pget_sizes_null() throws Throwable
+ {
H5.H5Pget_sizes(fcpl_id, null);
}
@Test
- public void testH5P_sizes() {
- long[] size = {0,0};
+ public void testH5P_sizes()
+ {
+ long[] size = {0, 0};
try {
H5.H5Pset_sizes(fcpl_id, 4, 8);
@@ -937,13 +1070,13 @@ public class TestH5P {
H5.H5Pclose(fcpl_id);
/* Get the file's dataset creation property list */
- fcpl_id = H5.H5Fget_create_plist(H5fid);
+ fcpl_id = H5.H5Fget_create_plist(H5fid);
/* Get the file's version information */
H5F_info2_t finfo = H5.H5Fget_info(H5fid);
- assertTrue("super block version: "+finfo.super_version, finfo.super_version == 0);
- assertTrue("free-space manager version: "+finfo.free_version, finfo.free_version == 0);
- assertTrue("shared object header version: "+finfo.sohm_version, finfo.sohm_version == 0);
+ assertTrue("super block version: " + finfo.super_version, finfo.super_version == 0);
+ assertTrue("free-space manager version: " + finfo.free_version, finfo.free_version == 0);
+ assertTrue("shared object header version: " + finfo.sohm_version, finfo.sohm_version == 0);
H5.H5Pget_sizes(fcpl_id, size);
deleteH5file();
}
@@ -951,18 +1084,20 @@ public class TestH5P {
err.printStackTrace();
fail("H5Pget_sizes: " + err);
}
- assertTrue("sizeof_addr size: "+size[0], size[0] == 4);
- assertTrue("sizeof_size size: "+size[1], size[1] == 8);
+ assertTrue("sizeof_addr size: " + size[0], size[0] == 4);
+ assertTrue("sizeof_size size: " + size[1], size[1] == 8);
}
@Test(expected = NullPointerException.class)
- public void testH5Pget_sym_k_null() throws Throwable {
+ public void testH5Pget_sym_k_null() throws Throwable
+ {
H5.H5Pget_sym_k(fcpl_id, null);
}
@Test
- public void testH5P_sym_k() {
- int[] size = {0,0};
+ public void testH5P_sym_k()
+ {
+ int[] size = {0, 0};
try {
H5.H5Pset_sym_k(fcpl_id, 32, 8);
@@ -972,13 +1107,13 @@ public class TestH5P {
H5.H5Pclose(fcpl_id);
/* Get the file's dataset creation property list */
- fcpl_id = H5.H5Fget_create_plist(H5fid);
+ fcpl_id = H5.H5Fget_create_plist(H5fid);
/* Get the file's version information */
H5F_info2_t finfo = H5.H5Fget_info(H5fid);
- assertTrue("super block version: "+finfo.super_version, finfo.super_version == 0);
- assertTrue("free-space manager version: "+finfo.free_version, finfo.free_version == 0);
- assertTrue("shared object header version: "+finfo.sohm_version, finfo.sohm_version == 0);
+ assertTrue("super block version: " + finfo.super_version, finfo.super_version == 0);
+ assertTrue("free-space manager version: " + finfo.free_version, finfo.free_version == 0);
+ assertTrue("shared object header version: " + finfo.sohm_version, finfo.sohm_version == 0);
H5.H5Pget_sym_k(fcpl_id, size);
deleteH5file();
}
@@ -986,17 +1121,19 @@ public class TestH5P {
err.printStackTrace();
fail("H5Pget_sym_k: " + err);
}
- assertTrue("symbol table tree rank: "+size[0], size[0] == 32);
- assertTrue("symbol table node size: "+size[1], size[1] == 8);
+ assertTrue("symbol table tree rank: " + size[0], size[0] == 32);
+ assertTrue("symbol table node size: " + size[1], size[1] == 8);
}
@Test(expected = NullPointerException.class)
- public void testH5Pget_istore_k_null() throws Throwable {
+ public void testH5Pget_istore_k_null() throws Throwable
+ {
H5.H5Pget_istore_k(fcpl_id, null);
}
@Test
- public void testH5P_istore_k() {
+ public void testH5P_istore_k()
+ {
int[] size = {0};
try {
@@ -1007,13 +1144,13 @@ public class TestH5P {
H5.H5Pclose(fcpl_id);
/* Get the file's dataset creation property list */
- fcpl_id = H5.H5Fget_create_plist(H5fid);
+ fcpl_id = H5.H5Fget_create_plist(H5fid);
/* Get the file's version information */
H5F_info2_t finfo = H5.H5Fget_info(H5fid);
- assertTrue("super block version: "+finfo.super_version, finfo.super_version == 1);
- assertTrue("free-space manager version: "+finfo.free_version, finfo.free_version == 0);
- assertTrue("shared object header version: "+finfo.sohm_version, finfo.sohm_version == 0);
+ assertTrue("super block version: " + finfo.super_version, finfo.super_version == 1);
+ assertTrue("free-space manager version: " + finfo.free_version, finfo.free_version == 0);
+ assertTrue("shared object header version: " + finfo.sohm_version, finfo.sohm_version == 0);
H5.H5Pget_istore_k(fcpl_id, size);
deleteH5file();
}
@@ -1021,13 +1158,14 @@ public class TestH5P {
err.printStackTrace();
fail("H5Pget_sym_k: " + err);
}
- assertTrue("chunked storage b-tree 1/2-rank: "+size[0], size[0] == 64);
+ assertTrue("chunked storage b-tree 1/2-rank: " + size[0], size[0] == 64);
}
@Test
- public void testH5P_obj_track_times() {
+ public void testH5P_obj_track_times()
+ {
boolean default_ret_val = false;
- boolean ret_val = true;
+ boolean ret_val = true;
try {
default_ret_val = H5.H5Pget_obj_track_times(ocpl_id);
H5.H5Pset_obj_track_times(ocpl_id, false);
@@ -1042,7 +1180,8 @@ public class TestH5P {
}
@Test
- public void testH5Pget_char_encoding() {
+ public void testH5Pget_char_encoding()
+ {
int char_encoding = 0;
try {
@@ -1065,18 +1204,19 @@ public class TestH5P {
}
@Test
- public void testH5P_fill_time() {
+ public void testH5P_fill_time()
+ {
int[] fill_time = {0};
try {
H5.H5Pget_fill_time(ocpl_id, fill_time);
- assertTrue("fill_time: "+fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_IFSET);
+ assertTrue("fill_time: " + fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_IFSET);
H5.H5Pset_fill_time(ocpl_id, HDF5Constants.H5D_FILL_TIME_ALLOC);
H5.H5Pget_fill_time(ocpl_id, fill_time);
- assertTrue("fill_time: "+fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_ALLOC);
+ assertTrue("fill_time: " + fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_ALLOC);
H5.H5Pset_fill_time(ocpl_id, HDF5Constants.H5D_FILL_TIME_NEVER);
H5.H5Pget_fill_time(ocpl_id, fill_time);
- assertTrue("fill_time: "+fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_NEVER);
+ assertTrue("fill_time: " + fill_time[0], fill_time[0] == HDF5Constants.H5D_FILL_TIME_NEVER);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1085,18 +1225,19 @@ public class TestH5P {
}
@Test
- public void testH5P_alloc_time() {
+ public void testH5P_alloc_time()
+ {
int[] alloc_time = {0};
try {
H5.H5Pget_alloc_time(ocpl_id, alloc_time);
- assertTrue("alloc_time: "+alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_LATE);
+ assertTrue("alloc_time: " + alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_LATE);
H5.H5Pset_alloc_time(ocpl_id, HDF5Constants.H5D_ALLOC_TIME_EARLY);
H5.H5Pget_alloc_time(ocpl_id, alloc_time);
- assertTrue("alloc_time: "+alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_EARLY);
+ assertTrue("alloc_time: " + alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_EARLY);
H5.H5Pset_alloc_time(ocpl_id, HDF5Constants.H5D_ALLOC_TIME_INCR);
H5.H5Pget_alloc_time(ocpl_id, alloc_time);
- assertTrue("alloc_time: "+alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_INCR);
+ assertTrue("alloc_time: " + alloc_time[0], alloc_time[0] == HDF5Constants.H5D_ALLOC_TIME_INCR);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1105,21 +1246,24 @@ public class TestH5P {
}
@Test
- public void testH5P_fill_value() {
- int[] fill_value = {-1};
+ public void testH5P_fill_value()
+ {
+ int[] fill_value = {-1};
int[] fill_value_status = {-1};
try {
H5.H5Pfill_value_defined(ocpl_id, fill_value_status);
- assertTrue("fill_value_status: "+fill_value_status[0], fill_value_status[0] == HDF5Constants.H5D_FILL_VALUE_DEFAULT);
+ assertTrue("fill_value_status: " + fill_value_status[0],
+ fill_value_status[0] == HDF5Constants.H5D_FILL_VALUE_DEFAULT);
H5.H5Pget_fill_value(ocpl_id, HDF5Constants.H5T_NATIVE_INT, fill_value);
- assertTrue("fill_value: "+fill_value[0], fill_value[0] == 0);
+ assertTrue("fill_value: " + fill_value[0], fill_value[0] == 0);
fill_value[0] = 255;
H5.H5Pset_fill_value(ocpl_id, HDF5Constants.H5T_NATIVE_INT, fill_value);
H5.H5Pget_fill_value(ocpl_id, HDF5Constants.H5T_NATIVE_INT, fill_value);
- assertTrue("fill_value: "+fill_value[0], fill_value[0] == 255);
+ assertTrue("fill_value: " + fill_value[0], fill_value[0] == 255);
H5.H5Pfill_value_defined(ocpl_id, fill_value_status);
- assertTrue("fill_value_status: "+fill_value_status[0], fill_value_status[0] == HDF5Constants.H5D_FILL_VALUE_USER_DEFINED);
+ assertTrue("fill_value_status: " + fill_value_status[0],
+ fill_value_status[0] == HDF5Constants.H5D_FILL_VALUE_USER_DEFINED);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1128,15 +1272,16 @@ public class TestH5P {
}
@Test
- public void testH5P_layout() {
+ public void testH5P_layout()
+ {
int layout_type = -1;
try {
layout_type = H5.H5Pget_layout(ocpl_id);
- assertTrue("layout: "+layout_type, layout_type == HDF5Constants.H5D_CONTIGUOUS);
+ assertTrue("layout: " + layout_type, layout_type == HDF5Constants.H5D_CONTIGUOUS);
H5.H5Pset_layout(ocpl_id, HDF5Constants.H5D_COMPACT);
layout_type = H5.H5Pget_layout(ocpl_id);
- assertTrue("layout: "+layout_type, layout_type == HDF5Constants.H5D_COMPACT);
+ assertTrue("layout: " + layout_type, layout_type == HDF5Constants.H5D_COMPACT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1145,18 +1290,19 @@ public class TestH5P {
}
@Test
- public void testH5P_chunk() {
- long[] chunk_size = {0,0};
- long[] chunk_new_size = {2,3};
- int layout_type = -1;
+ public void testH5P_chunk()
+ {
+ long[] chunk_size = {0, 0};
+ long[] chunk_new_size = {2, 3};
+ int layout_type = -1;
try {
H5.H5Pset_chunk(ocpl_id, 2, chunk_new_size);
H5.H5Pget_chunk(ocpl_id, 2, chunk_size);
- assertTrue("chunk: "+chunk_size[0], chunk_size[0] == chunk_new_size[0]);
- assertTrue("chunk: "+chunk_size[1], chunk_size[1] == chunk_new_size[1]);
+ assertTrue("chunk: " + chunk_size[0], chunk_size[0] == chunk_new_size[0]);
+ assertTrue("chunk: " + chunk_size[1], chunk_size[1] == chunk_new_size[1]);
layout_type = H5.H5Pget_layout(ocpl_id);
- assertTrue("layout: "+layout_type, layout_type == HDF5Constants.H5D_CHUNKED);
+ assertTrue("layout: " + layout_type, layout_type == HDF5Constants.H5D_CHUNKED);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1165,20 +1311,22 @@ public class TestH5P {
}
@Test
- public void testH5P_file_space_strategy() {
- long[] threshold = {0};
+ public void testH5P_file_space_strategy()
+ {
+ long[] threshold = {0};
boolean[] persist = {false};
- int strategy = 0;
+ int strategy = 0;
try {
strategy = H5.H5Pget_file_space_strategy(fcpl_id, persist, threshold);
- assertTrue("strategy(default): "+strategy, strategy == HDF5Constants.H5F_FSPACE_STRATEGY_FSM_AGGR);
- assertTrue("persist(default): "+persist[0], persist[0] == false);
- assertTrue("threshold(default): "+threshold[0], threshold[0] == 1);
+ assertTrue("strategy(default): " + strategy,
+ strategy == HDF5Constants.H5F_FSPACE_STRATEGY_FSM_AGGR);
+ assertTrue("persist(default): " + persist[0], persist[0] == false);
+ assertTrue("threshold(default): " + threshold[0], threshold[0] == 1);
H5.H5Pset_file_space_strategy(fcpl_id, HDF5Constants.H5F_FSPACE_STRATEGY_PAGE, true, 1);
strategy = H5.H5Pget_file_space_strategy(fcpl_id, persist, threshold);
- assertTrue("strategy: "+strategy, strategy == HDF5Constants.H5F_FSPACE_STRATEGY_PAGE);
- assertTrue("persist: "+persist[0], persist[0] == true);
- assertTrue("threshold: "+threshold[0], threshold[0] == 1);
+ assertTrue("strategy: " + strategy, strategy == HDF5Constants.H5F_FSPACE_STRATEGY_PAGE);
+ assertTrue("persist: " + persist[0], persist[0] == true);
+ assertTrue("threshold: " + threshold[0], threshold[0] == 1);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1187,23 +1335,25 @@ public class TestH5P {
}
@Test
- public void testH5P_file_space_page_size() {
+ public void testH5P_file_space_page_size()
+ {
long page_size = 0;
try {
page_size = H5.H5Pget_file_space_page_size(fcpl_id);
- assertTrue("page_size(default): "+page_size, page_size == 4096);
+ assertTrue("page_size(default): " + page_size, page_size == 4096);
H5.H5Pset_file_space_page_size(fcpl_id, 512);
page_size = H5.H5Pget_file_space_page_size(fcpl_id);
- assertTrue("page_size: "+page_size, page_size == 512);
+ assertTrue("page_size: " + page_size, page_size == 512);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5P_file_space_page_size: " + err);
}
- }
+ }
@Test
- public void testH5Pset_efile_prefix() {
+ public void testH5Pset_efile_prefix()
+ {
String prefix = "tmp";
try {
H5.H5Pset_efile_prefix(lapl_id, prefix);
@@ -1215,14 +1365,16 @@ public class TestH5P {
}
@Test(expected = NullPointerException.class)
- public void testH5Pset_efile_prefix_null() throws Throwable{
+ public void testH5Pset_efile_prefix_null() throws Throwable
+ {
H5.H5Pset_efile_prefix(lapl_id, null);
}
@Test
- public void testH5Pget_efile_prefix() {
+ public void testH5Pget_efile_prefix()
+ {
String prefix = "tmp";
- String pre = "";
+ String pre = "";
try {
H5.H5Pset_efile_prefix(lapl_id, prefix);
@@ -1236,15 +1388,17 @@ public class TestH5P {
}
@Ignore
- public void testH5P_chunk_opts() {
+ public void testH5P_chunk_opts()
+ {
int chunk_opts = -1;
try {
chunk_opts = H5.H5Pget_chunk_opts(ocpl_id);
- assertTrue("chunk_opts: "+chunk_opts, chunk_opts == 0);
+ assertTrue("chunk_opts: " + chunk_opts, chunk_opts == 0);
H5.H5Pset_chunk_opts(ocpl_id, HDF5Constants.H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS);
chunk_opts = H5.H5Pget_chunk_opts(ocpl_id);
- assertTrue("chunk_opts: "+chunk_opts, chunk_opts == HDF5Constants.H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS);
+ assertTrue("chunk_opts: " + chunk_opts,
+ chunk_opts == HDF5Constants.H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS);
}
catch (Throwable err) {
err.printStackTrace();
diff --git a/java/test/TestH5PData.java b/java/test/TestH5PData.java
index 8b04629..49a0b7d 100644
--- a/java/test/TestH5PData.java
+++ b/java/test/TestH5PData.java
@@ -31,44 +31,61 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5PData {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_FILE = "testPD.h5";
- private static final int DIM_X = 12;
- private static final int DIM_Y = 18;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
- long plist_id = HDF5Constants.H5I_INVALID_HID;
- long[] H5dims = { DIM_X, DIM_Y };
- double windchillF[][] =
- {{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0},
- {34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0, -41.0, -47.0, -53.0, -59.0, -66.0, -72.0},
- {32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0, -45.0, -51.0, -58.0, -64.0, -71.0, -77.0},
- {30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0, -48.0, -55.0, -61.0, -68.0, -74.0, -81.0},
- {29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0, -51.0, -58.0, -64.0, -71.0, -78.0, -84.0},
- {28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0, -53.0, -60.0, -67.0, -73.0, -80.0, -87.0},
- {28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0, -55.0, -62.0, -69.0, -76.0, -82.0, -89.0},
- {27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0, -57.0, -64.0, -71.0, -78.0, -84.0, -91.0},
- {26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0, -58.0, -65.0, -72.0, -79.0, -86.0, -93.0},
- {26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0, -60.0, -67.0, -74.0, -81.0, -88.0, -95.0},
- {25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0, -61.0, -68.0, -75.0, -82.0, -89.0, -97.0},
- {25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0, -62.0, -69.0, -76.0, -84.0, -91.0, -98.0}
- };
-
- private final void _deleteFile(String filename) {
+ private static final int DIM_X = 12;
+ private static final int DIM_Y = 18;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+ long plist_id = HDF5Constants.H5I_INVALID_HID;
+ long[] H5dims = {DIM_X, DIM_Y};
+ double windchillF[][] = {{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0,
+ -40.0, -46.0, -52.0, -57.0, -63.0},
+ {34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0,
+ -41.0, -47.0, -53.0, -59.0, -66.0, -72.0},
+ {32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0,
+ -45.0, -51.0, -58.0, -64.0, -71.0, -77.0},
+ {30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0,
+ -48.0, -55.0, -61.0, -68.0, -74.0, -81.0},
+ {29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0,
+ -51.0, -58.0, -64.0, -71.0, -78.0, -84.0},
+ {28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0,
+ -53.0, -60.0, -67.0, -73.0, -80.0, -87.0},
+ {28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0,
+ -55.0, -62.0, -69.0, -76.0, -82.0, -89.0},
+ {27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0,
+ -57.0, -64.0, -71.0, -78.0, -84.0, -91.0},
+ {26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0,
+ -58.0, -65.0, -72.0, -79.0, -86.0, -93.0},
+ {26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0,
+ -60.0, -67.0, -74.0, -81.0, -88.0, -95.0},
+ {25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0,
+ -61.0, -68.0, -75.0, -82.0, -89.0, -97.0},
+ {25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0,
+ -62.0, -69.0, -76.0, -84.0, -91.0, -98.0}};
+
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
- private final long _createFloatDataset(long fid, long dsid, String name, long dapl) {
+ private final long _createFloatDataset(long fid, long dsid, String name, long dapl)
+ {
long did = HDF5Constants.H5I_INVALID_HID;
try {
- did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_FLOAT, dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+ did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_FLOAT, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -80,49 +97,67 @@ public class TestH5PData {
}
@Before
- public void createH5file()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- H5dsid = H5.H5Screate_simple(2, H5dims, null);
- H5did = _createFloatDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ H5dsid = H5.H5Screate_simple(2, H5dims, null);
+ H5did = _createFloatDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5PData.createH5file: " + err);
}
- assertTrue("TestH5PData.createH5file: H5.H5Fcreate: ",H5fid > 0);
- assertTrue("TestH5PData.createH5file: H5.H5Screate_simple: ",H5dsid > 0);
- assertTrue("TestH5PData.createH5file: _createFloatDataset: ",H5did > 0);
+ assertTrue("TestH5PData.createH5file: H5.H5Fcreate: ", H5fid > 0);
+ assertTrue("TestH5PData.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
+ assertTrue("TestH5PData.createH5file: _createFloatDataset: ", H5did > 0);
assertTrue(plist_id > 0);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
_deleteFile(H5_FILE);
if (plist_id > 0)
- try {H5.H5Pclose(plist_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(plist_id);
+ }
+ catch (Exception ex) {
+ }
System.out.println();
}
@Test
- public void testH5Pdata_transform() {
- String f_to_c = "(5/9.0)*(x-32)";
+ public void testH5Pdata_transform()
+ {
+ String f_to_c = "(5/9.0)*(x-32)";
double windchillFread[][] = new double[DIM_X][DIM_Y];
double windchillC;
NumberFormat formatter = new DecimalFormat("#0.000");
@@ -130,38 +165,40 @@ public class TestH5PData {
try {
H5.H5Pset_data_transform(plist_id, f_to_c);
H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- plist_id, windchillF);
+ plist_id, windchillF);
H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, windchillFread);
+ HDF5Constants.H5P_DEFAULT, windchillFread);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pdata_transform: " + err);
}
- for(int row = 0; row < DIM_X; row++)
- for(int col = 0; col < DIM_Y; col++) {
- windchillC = (5/9.0)*(windchillF[row][col]-32);
- String Cstr = formatter.format(windchillC);
+ for (int row = 0; row < DIM_X; row++)
+ for (int col = 0; col < DIM_Y; col++) {
+ windchillC = (5 / 9.0) * (windchillF[row][col] - 32);
+ String Cstr = formatter.format(windchillC);
String Fread = formatter.format(windchillFread[row][col]);
- assertTrue("H5Pdata_transform: <"+row+","+col+">"+Fread+"="+Cstr, Fread.compareTo(Cstr)==0);
+ assertTrue("H5Pdata_transform: <" + row + "," + col + ">" + Fread + "=" + Cstr,
+ Fread.compareTo(Cstr) == 0);
}
}
@Test
- public void testH5P_buffer() {
+ public void testH5P_buffer()
+ {
long default_size = 0;
- long size = 0;
+ long size = 0;
try {
default_size = H5.H5Pget_buffer_size(plist_id);
- H5.H5Pset_buffer_size(plist_id, DIM_X*DIM_Y);
+ H5.H5Pset_buffer_size(plist_id, DIM_X * DIM_Y);
size = H5.H5Pget_buffer_size(plist_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5P_buffer fail: " + err);
}
- assertTrue("H5P_buffer default: "+default_size, default_size==1024*1024);
- assertTrue("H5P_buffer size: "+size, size==DIM_X*DIM_Y);
+ assertTrue("H5P_buffer default: " + default_size, default_size == 1024 * 1024);
+ assertTrue("H5P_buffer size: " + size, size == DIM_X * DIM_Y);
}
}
diff --git a/java/test/TestH5PL.java b/java/test/TestH5PL.java
index d44cc0b..f6440cd 100644
--- a/java/test/TestH5PL.java
+++ b/java/test/TestH5PL.java
@@ -14,6 +14,7 @@ package test;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
@@ -26,39 +27,45 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5PL {
- @Rule public TestName testname = new TestName();
- private static String FILENAME = "h5_dlopenChunk.h5";
- private static String DATASETNAME = "DS1";
- private static final int DIM_X = 6;
- private static final int DIM_Y = 8;
- private static final int CHUNK_X = 4;
- private static final int CHUNK_Y = 4;
- private static final int RANK = 2;
- private static final int NDIMS = 2;
+ @Rule
+ public TestName testname = new TestName();
+ private static String FILENAME = "h5_dlopenChunk.h5";
+ private static String DATASETNAME = "DS1";
+ private static final int DIM_X = 6;
+ private static final int DIM_Y = 8;
+ private static final int CHUNK_X = 4;
+ private static final int CHUNK_Y = 4;
+ private static final int RANK = 2;
+ private static final int NDIMS = 2;
private static final int H5Z_FILTER_DYNLIB4 = 260;
@Before
- public void checkOpenIDs() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void checkOpenIDs()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@After
- public void nextTestName() {
+ public void nextTestName()
+ {
System.out.println();
}
@Test
- public void TestH5PLplugins() {
+ public void TestH5PLplugins()
+ {
try {
int plugin_flags = H5.H5PLget_loading_state();
- assertTrue("H5.H5PLget_loading_state: "+plugin_flags, plugin_flags == HDF5Constants.H5PL_ALL_PLUGIN);
+ assertTrue("H5.H5PLget_loading_state: " + plugin_flags,
+ plugin_flags == HDF5Constants.H5PL_ALL_PLUGIN);
int new_setting = plugin_flags & ~HDF5Constants.H5PL_FILTER_PLUGIN;
- H5.H5PLset_loading_state (new_setting);
+ H5.H5PLset_loading_state(new_setting);
int changed_flags = H5.H5PLget_loading_state();
- assertTrue("H5.H5PLget_loading_state: "+changed_flags, changed_flags == new_setting);
- H5.H5PLset_loading_state (plugin_flags);
+ assertTrue("H5.H5PLget_loading_state: " + changed_flags, changed_flags == new_setting);
+ H5.H5PLset_loading_state(plugin_flags);
changed_flags = H5.H5PLget_loading_state();
- assertTrue("H5.H5PLget_loading_state: "+changed_flags, changed_flags == HDF5Constants.H5PL_ALL_PLUGIN);
+ assertTrue("H5.H5PLget_loading_state: " + changed_flags,
+ changed_flags == HDF5Constants.H5PL_ALL_PLUGIN);
}
catch (Throwable err) {
err.printStackTrace();
@@ -67,15 +74,16 @@ public class TestH5PL {
}
@Test
- public void TestH5PLpaths() {
+ public void TestH5PLpaths()
+ {
try {
// Get the original number of paths
int nStartPaths = H5.H5PLsize();
- int nPaths; /* # paths from H5PLSize() */
- int nTruePaths = nStartPaths; /* What the # paths should be */
- int index; /* Path table index */
- String path; /* Path from H5PLget() */
+ int nPaths; /* # paths from H5PLSize() */
+ int nTruePaths = nStartPaths; /* What the # paths should be */
+ int index; /* Path table index */
+ String path; /* Path from H5PLget() */
// APPEND a path and ensure it was added correctly
String pathAppend = "path_append";
@@ -86,8 +94,9 @@ public class TestH5PL {
assertTrue("# paths should be " + nTruePaths + " but was " + nPaths, nTruePaths == nPaths);
index = nTruePaths - 1;
- path = H5.H5PLget(index);
- assertTrue("Path should be " + pathAppend + " but was " + path, path.compareToIgnoreCase(pathAppend) == 0);
+ path = H5.H5PLget(index);
+ assertTrue("Path should be " + pathAppend + " but was " + path,
+ path.compareToIgnoreCase(pathAppend) == 0);
// PREPEND a path and ensure it was added correctly
String pathPrepend = "path_prepend";
@@ -98,13 +107,14 @@ public class TestH5PL {
assertTrue("# paths should be " + nTruePaths + " but was " + nPaths, nTruePaths == nPaths);
index = 0;
- path = H5.H5PLget(index);
- assertTrue("Path should be " + pathPrepend + " but was " + path, path.compareToIgnoreCase(pathPrepend) == 0);
+ path = H5.H5PLget(index);
+ assertTrue("Path should be " + pathPrepend + " but was " + path,
+ path.compareToIgnoreCase(pathPrepend) == 0);
// INSERT a path and ensure it was added correctly
// Inserting at the index == # of start paths ensures we're in the middle
String pathInsert = "path_insert";
- index = nStartPaths;
+ index = nStartPaths;
H5.H5PLinsert(pathInsert, index);
nPaths = H5.H5PLsize();
@@ -112,22 +122,24 @@ public class TestH5PL {
assertTrue("# paths should be " + nTruePaths + " but was " + nPaths, nTruePaths == nPaths);
path = H5.H5PLget(index);
- assertTrue("Path should be " + pathInsert + " but was " + path, path.compareToIgnoreCase(pathInsert) == 0);
+ assertTrue("Path should be " + pathInsert + " but was " + path,
+ path.compareToIgnoreCase(pathInsert) == 0);
// REPLACE the path we just added and ensure it updated correctly
String pathReplace = "path_replace";
- index = nStartPaths;
+ index = nStartPaths;
H5.H5PLreplace(pathReplace, index);
nPaths = H5.H5PLsize();
assertTrue("# paths should be " + nTruePaths + " but was " + nPaths, nTruePaths == nPaths);
path = H5.H5PLget(index);
- assertTrue("Path should be " + pathReplace + " but was " + path, path.compareToIgnoreCase(pathReplace) == 0);
+ assertTrue("Path should be " + pathReplace + " but was " + path,
+ path.compareToIgnoreCase(pathReplace) == 0);
// REMOVE the path we just replaced and check that the table was compacted
// The (index+1) path should move down to fill the space when the path is removed.
- index = nStartPaths;
+ index = nStartPaths;
String pathRemove = H5.H5PLget(index + 1);
H5.H5PLremove(index);
@@ -136,7 +148,8 @@ public class TestH5PL {
assertTrue("# paths should be " + nTruePaths + " but was " + nPaths, nTruePaths == nPaths);
path = H5.H5PLget(index);
- assertTrue("Path should be " + pathRemove + " but was " + path, path.compareToIgnoreCase(pathRemove) == 0);
+ assertTrue("Path should be " + pathRemove + " but was " + path,
+ path.compareToIgnoreCase(pathRemove) == 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -145,22 +158,23 @@ public class TestH5PL {
}
@Ignore
- public void TestH5PLdlopen() {
- long file_id = HDF5Constants.H5I_INVALID_HID;
+ public void TestH5PLdlopen()
+ {
+ long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
- long dataset_id = HDF5Constants.H5I_INVALID_HID;
- long fapl_id = HDF5Constants.H5I_INVALID_HID;
- long dcpl_id = HDF5Constants.H5I_INVALID_HID;
+ long dataset_id = HDF5Constants.H5I_INVALID_HID;
+ long fapl_id = HDF5Constants.H5I_INVALID_HID;
+ long dcpl_id = HDF5Constants.H5I_INVALID_HID;
try {
- int[] cd_values = {9, 0, 0, 0};
- int[] libversion = {0, 0, 0};
- long[] dims = { DIM_X, DIM_Y };
- long[] chunk_dims = { CHUNK_X, CHUNK_Y };
- int[][] dset_data = new int[DIM_X][DIM_Y];
- int[] mdc_nelmts = {0};
+ int[] cd_values = {9, 0, 0, 0};
+ int[] libversion = {0, 0, 0};
+ long[] dims = {DIM_X, DIM_Y};
+ long[] chunk_dims = {CHUNK_X, CHUNK_Y};
+ int[][] dset_data = new int[DIM_X][DIM_Y];
+ int[] mdc_nelmts = {0};
long[] rdcc_nelmts = {0};
long[] rdcc_nbytes = {0};
- double[] rdcc_w0 = {0};
+ double[] rdcc_w0 = {0};
// Initialize data to "1", to make it easier to see the selections.
for (int indx = 0; indx < DIM_X; indx++)
@@ -170,7 +184,7 @@ public class TestH5PL {
// Create a new file using default properties.
try {
file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -212,7 +226,8 @@ public class TestH5PL {
cd_values[2] = libversion[1];
cd_values[3] = libversion[2];
if (dcpl_id >= 0)
- H5.H5Pset_filter(dcpl_id, H5Z_FILTER_DYNLIB4, HDF5Constants.H5Z_FLAG_MANDATORY, 4, cd_values);
+ H5.H5Pset_filter(dcpl_id, H5Z_FILTER_DYNLIB4, HDF5Constants.H5Z_FLAG_MANDATORY, 4,
+ cd_values);
}
catch (Exception e) {
e.printStackTrace();
@@ -222,8 +237,9 @@ public class TestH5PL {
// Create the chunked dataset.
try {
if ((file_id >= 0) && (filespace_id >= 0) && (dcpl_id >= 0))
- dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_NATIVE_INT, filespace_id,
- HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
+ dataset_id =
+ H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_NATIVE_INT, filespace_id,
+ HDF5Constants.H5P_DEFAULT, dcpl_id, HDF5Constants.H5P_DEFAULT);
}
catch (Exception e) {
e.printStackTrace();
@@ -232,8 +248,8 @@ public class TestH5PL {
try {
if (dataset_id >= 0)
- H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5S_ALL, dset_data);
+ H5.H5Dwrite(dataset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, dset_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -247,13 +263,29 @@ public class TestH5PL {
finally {
// End access to the dataset and release resources used by it.
if (dcpl_id >= 0)
- try {H5.H5Pclose_class(dcpl_id);} catch (Throwable err) {}
+ try {
+ H5.H5Pclose_class(dcpl_id);
+ }
+ catch (Throwable err) {
+ }
if (dataset_id >= 0)
- try {H5.H5Dclose(dataset_id);} catch (Throwable err) {}
+ try {
+ H5.H5Dclose(dataset_id);
+ }
+ catch (Throwable err) {
+ }
if (filespace_id >= 0)
- try {H5.H5Sclose(filespace_id);} catch (Throwable err) {}
+ try {
+ H5.H5Sclose(filespace_id);
+ }
+ catch (Throwable err) {
+ }
if (file_id >= 0)
- try {H5.H5Fclose(file_id);} catch (Throwable err) {}
+ try {
+ H5.H5Fclose(file_id);
+ }
+ catch (Throwable err) {
+ }
}
}
}
diff --git a/java/test/TestH5Pfapl.java b/java/test/TestH5Pfapl.java
index f6be24f..307ee74 100644
--- a/java/test/TestH5Pfapl.java
+++ b/java/test/TestH5Pfapl.java
@@ -35,104 +35,140 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Pfapl {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
- private static final String H5_FILE = "testPf.h5";
- private static final String H5_LOG_FILE = "testPf.log";
+ private static final String H5_FILE = "testPf.h5";
+ private static final String H5_LOG_FILE = "testPf.log";
private static final String H5_FAMILY_FILE = "testPf%05d";
- private static final String H5_MULTI_FILE = "testPfmulti";
- private static char MULTI_LETTERS[] = {'X','s','b','r','g','l','o'};
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
- private static final int DIMF_X = 12;
- private static final int DIMF_Y = 18;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
- long H5Fdsid = HDF5Constants.H5I_INVALID_HID;
- long H5Fdid = HDF5Constants.H5I_INVALID_HID;
- long[] H5dims = { DIM_X, DIM_Y };
- long fapl_id = HDF5Constants.H5I_INVALID_HID;
- long plapl_id = HDF5Constants.H5I_INVALID_HID;
- long dapl_id = HDF5Constants.H5I_INVALID_HID;
- long plist_id = HDF5Constants.H5I_INVALID_HID;
- long btplist_id = HDF5Constants.H5I_INVALID_HID;
- long[] H5Fdims = { DIMF_X, DIMF_Y };
- double windchillF[][] =
- {{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0},
- {34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0, -41.0, -47.0, -53.0, -59.0, -66.0, -72.0},
- {32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0, -45.0, -51.0, -58.0, -64.0, -71.0, -77.0},
- {30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0, -48.0, -55.0, -61.0, -68.0, -74.0, -81.0},
- {29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0, -51.0, -58.0, -64.0, -71.0, -78.0, -84.0},
- {28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0, -53.0, -60.0, -67.0, -73.0, -80.0, -87.0},
- {28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0, -55.0, -62.0, -69.0, -76.0, -82.0, -89.0},
- {27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0, -57.0, -64.0, -71.0, -78.0, -84.0, -91.0},
- {26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0, -58.0, -65.0, -72.0, -79.0, -86.0, -93.0},
- {26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0, -60.0, -67.0, -74.0, -81.0, -88.0, -95.0},
- {25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0, -61.0, -68.0, -75.0, -82.0, -89.0, -97.0},
- {25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0, -62.0, -69.0, -76.0, -84.0, -91.0, -98.0}
- };
-
- private final void _deleteFile(String filename) {
+ private static final String H5_MULTI_FILE = "testPfmulti";
+ private static char MULTI_LETTERS[] = {'X', 's', 'b', 'r', 'g', 'l', 'o'};
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
+ private static final int DIMF_X = 12;
+ private static final int DIMF_Y = 18;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+ long H5Fdsid = HDF5Constants.H5I_INVALID_HID;
+ long H5Fdid = HDF5Constants.H5I_INVALID_HID;
+ long[] H5dims = {DIM_X, DIM_Y};
+ long fapl_id = HDF5Constants.H5I_INVALID_HID;
+ long plapl_id = HDF5Constants.H5I_INVALID_HID;
+ long dapl_id = HDF5Constants.H5I_INVALID_HID;
+ long plist_id = HDF5Constants.H5I_INVALID_HID;
+ long btplist_id = HDF5Constants.H5I_INVALID_HID;
+ long[] H5Fdims = {DIMF_X, DIMF_Y};
+ double windchillF[][] = {{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0,
+ -40.0, -46.0, -52.0, -57.0, -63.0},
+ {34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0,
+ -41.0, -47.0, -53.0, -59.0, -66.0, -72.0},
+ {32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0,
+ -45.0, -51.0, -58.0, -64.0, -71.0, -77.0},
+ {30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0,
+ -48.0, -55.0, -61.0, -68.0, -74.0, -81.0},
+ {29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0,
+ -51.0, -58.0, -64.0, -71.0, -78.0, -84.0},
+ {28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0,
+ -53.0, -60.0, -67.0, -73.0, -80.0, -87.0},
+ {28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0,
+ -55.0, -62.0, -69.0, -76.0, -82.0, -89.0},
+ {27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0,
+ -57.0, -64.0, -71.0, -78.0, -84.0, -91.0},
+ {26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0,
+ -58.0, -65.0, -72.0, -79.0, -86.0, -93.0},
+ {26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0,
+ -60.0, -67.0, -74.0, -81.0, -88.0, -95.0},
+ {25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0,
+ -61.0, -68.0, -75.0, -82.0, -89.0, -97.0},
+ {25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0,
+ -62.0, -69.0, -76.0, -84.0, -91.0, -98.0}};
+
+ private final void _deleteFile(String filename)
+ {
File file = null;
try {
file = new File(filename);
}
- catch (Throwable err) {}
+ catch (Throwable err) {
+ }
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
- private final void _deleteLogFile() {
+ private final void _deleteLogFile()
+ {
File file = null;
try {
file = new File(H5_LOG_FILE);
}
- catch (Throwable err) {}
+ catch (Throwable err) {
+ }
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
- private final void _deleteFamilyFile() {
+ private final void _deleteFamilyFile()
+ {
File file = null;
- for(int indx = 0; ;indx++) {
+ for (int indx = 0;; indx++) {
java.text.DecimalFormat myFormat = new java.text.DecimalFormat("00000");
try {
- file = new File("test"+myFormat.format(Integer.valueOf(indx))+".h5");
+ file = new File("test" + myFormat.format(Integer.valueOf(indx)) + ".h5");
+ }
+ catch (Throwable err) {
}
- catch (Throwable err) {}
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
else
return;
}
}
- private final void _deleteMultiFile() {
+ private final void _deleteMultiFile()
+ {
File file = null;
- for(int indx = 1;indx<7;indx++) {
+ for (int indx = 1; indx < 7; indx++) {
try {
- file = new File(H5_MULTI_FILE+"-"+MULTI_LETTERS[indx]+".h5");
+ file = new File(H5_MULTI_FILE + "-" + MULTI_LETTERS[indx] + ".h5");
+ }
+ catch (Throwable err) {
}
- catch (Throwable err) {}
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
}
- private final long _createDataset(long fid, long dsid, String name, long dapl) {
+ private final long _createDataset(long fid, long dsid, String name, long dapl)
+ {
long did = HDF5Constants.H5I_INVALID_HID;
try {
- did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+ did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -143,11 +179,13 @@ public class TestH5Pfapl {
return did;
}
- private final void _createFloatDataset() {
+ private final void _createFloatDataset()
+ {
try {
H5Fdsid = H5.H5Screate_simple(2, H5Fdims, null);
- H5Fdid = H5.H5Dcreate(H5fid, "dsfloat", HDF5Constants.H5T_NATIVE_FLOAT, H5Fdsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5Fdid =
+ H5.H5Dcreate(H5fid, "dsfloat", HDF5Constants.H5T_NATIVE_FLOAT, H5Fdsid,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -163,7 +201,8 @@ public class TestH5Pfapl {
}
}
- private final void _createH5multiFileDS() {
+ private final void _createH5multiFileDS()
+ {
try {
H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
}
@@ -181,12 +220,12 @@ public class TestH5Pfapl {
}
}
- private final void _createH5File(long fapl) {
+ private final void _createH5File(long fapl)
+ {
try {
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, fapl);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, fapl);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
- H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
+ H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -204,12 +243,13 @@ public class TestH5Pfapl {
}
}
- private final void _createH5familyFile(long fapl) {
+ private final void _createH5familyFile(long fapl)
+ {
try {
- H5fid = H5.H5Fcreate(H5_FAMILY_FILE+".h5", HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, fapl);
+ H5fid = H5.H5Fcreate(H5_FAMILY_FILE + ".h5", HDF5Constants.H5F_ACC_TRUNC,
+ HDF5Constants.H5P_DEFAULT, fapl);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
- H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
+ H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
@@ -227,10 +267,10 @@ public class TestH5Pfapl {
}
}
- private final void _createH5multiFile(long fapl) {
+ private final void _createH5multiFile(long fapl)
+ {
try {
- H5fid = H5.H5Fcreate(H5_MULTI_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, fapl);
+ H5fid = H5.H5Fcreate(H5_MULTI_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, fapl);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
}
catch (Throwable err) {
@@ -248,22 +288,16 @@ public class TestH5Pfapl {
}
}
- public void deleteH5file() {
- _deleteFile(H5_FILE);
- }
+ public void deleteH5file() { _deleteFile(H5_FILE); }
- public void deleteH5familyfile() {
- _deleteFamilyFile();
- }
+ public void deleteH5familyfile() { _deleteFamilyFile(); }
- public void deleteH5multifile() {
- _deleteMultiFile();
- }
+ public void deleteH5multifile() { _deleteMultiFile(); }
@Before
- public void createFileAccess()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createFileAccess() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
@@ -283,9 +317,9 @@ public class TestH5Pfapl {
}
assertTrue(plapl_id > 0);
try {
- plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
+ plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
btplist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
- dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
+ dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
}
catch (Throwable err) {
err.printStackTrace();
@@ -297,34 +331,76 @@ public class TestH5Pfapl {
}
@After
- public void deleteFileAccess() throws HDF5LibraryException {
+ public void deleteFileAccess() throws HDF5LibraryException
+ {
if (fapl_id > 0)
- try {H5.H5Pclose(fapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(fapl_id);
+ }
+ catch (Exception ex) {
+ }
if (plapl_id > 0)
- try {H5.H5Pclose(plapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(plapl_id);
+ }
+ catch (Exception ex) {
+ }
if (dapl_id > 0)
- try {H5.H5Pclose(dapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(dapl_id);
+ }
+ catch (Exception ex) {
+ }
if (plist_id > 0)
- try {H5.H5Pclose(plist_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(plist_id);
+ }
+ catch (Exception ex) {
+ }
if (btplist_id > 0)
- try {H5.H5Pclose(btplist_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(btplist_id);
+ }
+ catch (Exception ex) {
+ }
if (H5Fdsid > 0)
- try {H5.H5Sclose(H5Fdsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5Fdsid);
+ }
+ catch (Exception ex) {
+ }
if (H5Fdid > 0)
- try {H5.H5Dclose(H5Fdid);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5Fdid);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
System.out.println();
}
@Test
- public void testH5Pget_libver_bounds() {
- int ret_val = -1;
+ public void testH5Pget_libver_bounds()
+ {
+ int ret_val = -1;
int[] libver = new int[2];
try {
@@ -342,11 +418,12 @@ public class TestH5Pfapl {
}
@Test
- public void testH5Pset_libver_bounds() {
+ public void testH5Pset_libver_bounds()
+ {
- int ret_val = -1;
- int low = HDF5Constants.H5F_LIBVER_EARLIEST;
- int high = HDF5Constants.H5F_LIBVER_LATEST;
+ int ret_val = -1;
+ int low = HDF5Constants.H5F_LIBVER_EARLIEST;
+ int high = HDF5Constants.H5F_LIBVER_LATEST;
int[] libver = new int[2];
try {
@@ -365,15 +442,17 @@ public class TestH5Pfapl {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Pset_elink_fapl_NegativeID() throws Throwable {
- H5.H5Pset_elink_fapl(-1, fapl_id );
+ public void testH5Pset_elink_fapl_NegativeID() throws Throwable
+ {
+ H5.H5Pset_elink_fapl(-1, fapl_id);
}
@Test
- public void testH5Pset_elink_fapl() {
+ public void testH5Pset_elink_fapl()
+ {
int ret_val = -1;
try {
- ret_val = H5.H5Pset_elink_fapl(plapl_id, fapl_id );
+ ret_val = H5.H5Pset_elink_fapl(plapl_id, fapl_id);
}
catch (Throwable err) {
err.printStackTrace();
@@ -383,12 +462,13 @@ public class TestH5Pfapl {
}
@Test
- public void testH5Pget_elink_fapl() {
+ public void testH5Pget_elink_fapl()
+ {
long ret_val_id = HDF5Constants.H5I_INVALID_HID;
try {
ret_val_id = H5.H5Pget_elink_fapl(plapl_id);
assertTrue("H5Pget_elink_fapl", ret_val_id >= 0);
- assertEquals(HDF5Constants.H5P_DEFAULT, ret_val_id );
+ assertEquals(HDF5Constants.H5P_DEFAULT, ret_val_id);
}
catch (Throwable err) {
err.printStackTrace();
@@ -396,15 +476,20 @@ public class TestH5Pfapl {
}
finally {
if (ret_val_id > 0)
- try {H5.H5Pclose(ret_val_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(ret_val_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5P_elink_fapl() {
+ public void testH5P_elink_fapl()
+ {
long ret_val_id = HDF5Constants.H5I_INVALID_HID;
try {
- H5.H5Pset_elink_fapl(plapl_id, fapl_id );
+ H5.H5Pset_elink_fapl(plapl_id, fapl_id);
ret_val_id = H5.H5Pget_elink_fapl(plapl_id);
assertTrue("H5P_elink_fapl", ret_val_id >= 0);
}
@@ -414,16 +499,21 @@ public class TestH5Pfapl {
}
finally {
if (ret_val_id > 0)
- try {H5.H5Pclose(ret_val_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(ret_val_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5P_elink_file_cache_size() {
+ public void testH5P_elink_file_cache_size()
+ {
long elink_fapl_id = HDF5Constants.H5I_INVALID_HID;
- int efc_size = 0;
+ int efc_size = 0;
try {
- H5.H5Pset_elink_fapl(plapl_id, fapl_id );
+ H5.H5Pset_elink_fapl(plapl_id, fapl_id);
elink_fapl_id = H5.H5Pget_elink_fapl(plapl_id);
assertTrue("H5P_elink_file_cache_size", elink_fapl_id >= 0);
try {
@@ -449,15 +539,20 @@ public class TestH5Pfapl {
}
finally {
if (elink_fapl_id > 0)
- try {H5.H5Pclose(elink_fapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(elink_fapl_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5P_btree_ratios() {
- double[] left = {0.1};
+ public void testH5P_btree_ratios()
+ {
+ double[] left = {0.1};
double[] middle = {0.5};
- double[] right = {0.7};
+ double[] right = {0.7};
try {
H5.H5Pset_btree_ratios(plist_id, left[0], middle[0], right[0]);
H5.H5Pget_btree_ratios(plist_id, left, middle, right);
@@ -470,7 +565,8 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_edc_check() {
+ public void testH5P_edc_check()
+ {
int ret_val_id = -1;
try {
ret_val_id = H5.H5Pget_edc_check(plist_id);
@@ -486,7 +582,8 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_fclose_degree() {
+ public void testH5P_fclose_degree()
+ {
int ret_val_id = -1;
try {
ret_val_id = H5.H5Pget_fclose_degree(fapl_id);
@@ -517,8 +614,9 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_alignment() {
- long[] align = {0,0};
+ public void testH5P_alignment()
+ {
+ long[] align = {0, 0};
try {
H5.H5Pget_alignment(fapl_id, align);
assertTrue("H5P_alignment threshold default", align[0] == 1);
@@ -543,7 +641,8 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_meta_block_size() {
+ public void testH5P_meta_block_size()
+ {
long meta_size = 0;
try {
meta_size = H5.H5Pget_meta_block_size(fapl_id);
@@ -566,7 +665,8 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_small_data_block_size() {
+ public void testH5P_small_data_block_size()
+ {
long align = 0;
try {
align = H5.H5Pget_small_data_block_size(fapl_id);
@@ -589,7 +689,8 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_hyper_vector_size() {
+ public void testH5P_hyper_vector_size()
+ {
long[] align = {0};
try {
H5.H5Pget_hyper_vector_size(plist_id, align);
@@ -612,14 +713,15 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_cache() {
+ public void testH5P_cache()
+ {
long[] rdcc_nelmts = {0};
long[] rdcc_nbytes = {0};
- double[] rdcc_w0 = {0};
+ double[] rdcc_w0 = {0};
try {
H5.H5Pget_cache(fapl_id, null, rdcc_nelmts, rdcc_nbytes, rdcc_w0);
assertTrue("H5P_cache default", rdcc_nelmts[0] == 521);
- assertTrue("H5P_cache default", rdcc_nbytes[0] == (1024*1024));
+ assertTrue("H5P_cache default", rdcc_nbytes[0] == (1024 * 1024));
assertTrue("H5P_cache default", rdcc_w0[0] == 0.75);
}
catch (Throwable err) {
@@ -639,14 +741,15 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_chunk_cache() {
+ public void testH5P_chunk_cache()
+ {
long[] rdcc_nslots = {0};
long[] rdcc_nbytes = {0};
- double[] rdcc_w0 = {0};
+ double[] rdcc_w0 = {0};
try {
H5.H5Pget_chunk_cache(dapl_id, rdcc_nslots, rdcc_nbytes, rdcc_w0);
assertTrue("H5P_chunk_cache default", rdcc_nslots[0] == 521);
- assertTrue("H5P_chunk_cache default", rdcc_nbytes[0] == (1024*1024));
+ assertTrue("H5P_chunk_cache default", rdcc_nbytes[0] == (1024 * 1024));
assertTrue("H5P_chunk_cache default", rdcc_w0[0] == 0.75);
}
catch (Throwable err) {
@@ -666,11 +769,12 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_sieve_buf_size() {
+ public void testH5P_sieve_buf_size()
+ {
long buf_size = 0;
try {
buf_size = H5.H5Pget_sieve_buf_size(fapl_id);
- assertTrue("H5P_sieve_buf_size default", buf_size == (64*1024));
+ assertTrue("H5P_sieve_buf_size default", buf_size == (64 * 1024));
}
catch (Throwable err) {
err.printStackTrace();
@@ -689,7 +793,8 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_gc_references() {
+ public void testH5P_gc_references()
+ {
boolean ret_val_id = false;
try {
H5.H5Pset_gc_references(fapl_id, true);
@@ -703,11 +808,13 @@ public class TestH5Pfapl {
}
@Test
- public void testH5Pget_mdc_config() {
+ public void testH5Pget_mdc_config()
+ {
H5AC_cache_config_t cache_config = null;
try {
cache_config = H5.H5Pget_mdc_config(fapl_id);
- assertTrue("H5Pget_mdc_config", cache_config.version==HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION);
+ assertTrue("H5Pget_mdc_config",
+ cache_config.version == HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION);
}
catch (Throwable err) {
err.printStackTrace();
@@ -716,11 +823,13 @@ public class TestH5Pfapl {
}
@Test
- public void testH5Pset_mdc_config() {
+ public void testH5Pset_mdc_config()
+ {
H5AC_cache_config_t cache_config = null;
try {
cache_config = H5.H5Pget_mdc_config(fapl_id);
- assertTrue("H5Pset_mdc_config", cache_config.version==HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION);
+ assertTrue("H5Pset_mdc_config",
+ cache_config.version == HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION);
}
catch (Throwable err) {
err.printStackTrace();
@@ -730,8 +839,9 @@ public class TestH5Pfapl {
cache_config.decr_mode = HDF5Constants.H5C_decr_off;
H5.H5Pset_mdc_config(fapl_id, cache_config);
cache_config = H5.H5Pget_mdc_config(fapl_id);
- assertTrue("H5Pset_mdc_config", cache_config.version==HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION);
- assertTrue("H5Pset_mdc_config", cache_config.decr_mode==HDF5Constants.H5C_decr_off);
+ assertTrue("H5Pset_mdc_config",
+ cache_config.version == HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION);
+ assertTrue("H5Pset_mdc_config", cache_config.decr_mode == HDF5Constants.H5C_decr_off);
}
catch (Throwable err) {
err.printStackTrace();
@@ -740,24 +850,25 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_fapl_core() {
+ public void testH5P_fapl_core()
+ {
if (HDF5Constants.H5FD_CORE < 0)
return;
try {
H5.H5Pset_fapl_core(fapl_id, 4096, false);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: core = "+ driver_type, HDF5Constants.H5FD_CORE==driver_type);
+ assertTrue("H5Pget_driver: core = " + driver_type, HDF5Constants.H5FD_CORE == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_fapl_core: " + err);
}
try {
- long[] increment = {-1};
+ long[] increment = {-1};
boolean[] backingstore = {true};
H5.H5Pget_fapl_core(fapl_id, increment, backingstore);
- assertTrue("H5Pget_fapl_core: increment="+increment[0], increment[0]==4096);
- assertTrue("H5Pget_fapl_core: backingstore="+backingstore[0], !backingstore[0]);
+ assertTrue("H5Pget_fapl_core: increment=" + increment[0], increment[0] == 4096);
+ assertTrue("H5Pget_fapl_core: backingstore=" + backingstore[0], !backingstore[0]);
}
catch (Throwable err) {
err.printStackTrace();
@@ -766,13 +877,14 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_fapl_family() {
+ public void testH5P_fapl_family()
+ {
if (HDF5Constants.H5FD_FAMILY < 0)
return;
try {
H5.H5Pset_fapl_family(fapl_id, 1024, HDF5Constants.H5P_DEFAULT);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: family = "+ driver_type, HDF5Constants.H5FD_FAMILY==driver_type);
+ assertTrue("H5Pget_driver: family = " + driver_type, HDF5Constants.H5FD_FAMILY == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -782,8 +894,9 @@ public class TestH5Pfapl {
long[] member_size = {0};
long[] member_fapl = {-1};
H5.H5Pget_fapl_family(fapl_id, member_size, member_fapl);
- assertTrue("H5Pget_fapl_family: member_size="+member_size[0], member_size[0]==1024);
- assertTrue("H5Pget_fapl_family: member_fapl ", H5.H5P_equal(member_fapl[0], HDF5Constants.H5P_FILE_ACCESS_DEFAULT));
+ assertTrue("H5Pget_fapl_family: member_size=" + member_size[0], member_size[0] == 1024);
+ assertTrue("H5Pget_fapl_family: member_fapl ",
+ H5.H5P_equal(member_fapl[0], HDF5Constants.H5P_FILE_ACCESS_DEFAULT));
}
catch (Throwable err) {
err.printStackTrace();
@@ -794,13 +907,14 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_family_offset() {
+ public void testH5P_family_offset()
+ {
if (HDF5Constants.H5FD_FAMILY < 0)
return;
try {
H5.H5Pset_fapl_family(fapl_id, 1024, HDF5Constants.H5P_DEFAULT);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: family = "+ driver_type, HDF5Constants.H5FD_FAMILY==driver_type);
+ assertTrue("H5Pget_driver: family = " + driver_type, HDF5Constants.H5FD_FAMILY == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -817,7 +931,7 @@ public class TestH5Pfapl {
}
try {
long offset = H5.H5Pget_family_offset(fapl_id);
- assertTrue("H5Pget_fapl_family: offset="+offset, offset==family_offset);
+ assertTrue("H5Pget_fapl_family: offset=" + offset, offset == family_offset);
}
catch (Throwable err) {
err.printStackTrace();
@@ -827,13 +941,14 @@ public class TestH5Pfapl {
}
@Test
- public void testH5Pset_fapl_sec2() {
+ public void testH5Pset_fapl_sec2()
+ {
if (HDF5Constants.H5FD_SEC2 < 0)
return;
try {
H5.H5Pset_fapl_sec2(fapl_id);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: sec2 = "+ driver_type, HDF5Constants.H5FD_SEC2==driver_type);
+ assertTrue("H5Pget_driver: sec2 = " + driver_type, HDF5Constants.H5FD_SEC2 == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -844,13 +959,14 @@ public class TestH5Pfapl {
}
@Test
- public void testH5Pset_fapl_stdio() {
+ public void testH5Pset_fapl_stdio()
+ {
if (HDF5Constants.H5FD_STDIO < 0)
return;
try {
H5.H5Pset_fapl_stdio(fapl_id);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: stdio = "+ driver_type, HDF5Constants.H5FD_STDIO==driver_type);
+ assertTrue("H5Pget_driver: stdio = " + driver_type, HDF5Constants.H5FD_STDIO == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -861,14 +977,15 @@ public class TestH5Pfapl {
}
@Test
- public void testH5Pset_fapl_log() {
+ public void testH5Pset_fapl_log()
+ {
if (HDF5Constants.H5FD_LOG < 0)
return;
try {
long log_flags = HDF5Constants.H5FD_LOG_LOC_IO;
H5.H5Pset_fapl_log(fapl_id, H5_LOG_FILE, log_flags, 1024);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: log = "+ driver_type, HDF5Constants.H5FD_LOG==driver_type);
+ assertTrue("H5Pget_driver: log = " + driver_type, HDF5Constants.H5FD_LOG == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -880,19 +997,20 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_fapl_muti_nulls() {
+ public void testH5P_fapl_muti_nulls()
+ {
if (HDF5Constants.H5FD_MULTI < 0)
return;
- int[] member_map = null;
- long[] member_fapl = null;
+ int[] member_map = null;
+ long[] member_fapl = null;
String[] member_name = null;
- long[] member_addr = null;
+ long[] member_addr = null;
try {
H5.H5Pset_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr, true);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: multi = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type);
+ assertTrue("H5Pget_driver: multi = " + driver_type, HDF5Constants.H5FD_MULTI == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -911,53 +1029,68 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_fapl_muti_defaults() {
+ public void testH5P_fapl_muti_defaults()
+ {
if (HDF5Constants.H5FD_MULTI < 0)
return;
int H5FD_MEM_NTYPES = HDF5Constants.H5FD_MEM_NTYPES; // 7
long sH5FD_MEM_DEFAULT_HADDR = HDF5Constants.H5FD_DEFAULT_HADDR_SIZE;
- long sH5FD_MEM_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_SIZE;
- long sH5FD_MEM_SUPER_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_SUPER_SIZE;
- long sH5FD_MEM_BTREE_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_BTREE_SIZE;
- long sH5FD_MEM_DRAW_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_DRAW_SIZE;
- long sH5FD_MEM_GHEAP_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_GHEAP_SIZE;
- long sH5FD_MEM_LHEAP_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_LHEAP_SIZE;
- long sH5FD_MEM_OHDR_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_OHDR_SIZE;
- int[] member_map = null;
- long[] member_fapl = null;
- String[] member_name = null;
- long[] member_addr = null;
+ long sH5FD_MEM_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_SIZE;
+ long sH5FD_MEM_SUPER_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_SUPER_SIZE;
+ long sH5FD_MEM_BTREE_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_BTREE_SIZE;
+ long sH5FD_MEM_DRAW_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_DRAW_SIZE;
+ long sH5FD_MEM_GHEAP_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_GHEAP_SIZE;
+ long sH5FD_MEM_LHEAP_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_LHEAP_SIZE;
+ long sH5FD_MEM_OHDR_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_OHDR_SIZE;
+ int[] member_map = null;
+ long[] member_fapl = null;
+ String[] member_name = null;
+ long[] member_addr = null;
try {
H5.H5Pset_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr, true);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: multi = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type);
+ assertTrue("H5Pget_driver: multi = " + driver_type, HDF5Constants.H5FD_MULTI == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_fapl_muti: " + err);
}
try {
- member_map = new int[HDF5Constants.H5FD_MEM_NTYPES];
- member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES];
- member_name = new String[HDF5Constants.H5FD_MEM_NTYPES];
- member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES];
+ member_map = new int[HDF5Constants.H5FD_MEM_NTYPES];
+ member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES];
+ member_name = new String[HDF5Constants.H5FD_MEM_NTYPES];
+ member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES];
boolean relax = H5.H5Pget_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr);
assertTrue("H5Pget_fapl_muti: relax ", relax);
- assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_DEFAULT], member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_DEFAULT);
- assertTrue("H5Pget_fapl_muti: member_fapl ", H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT], HDF5Constants.H5P_FILE_ACCESS_DEFAULT));
- assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_DEFAULT], member_name[HDF5Constants.H5FD_MEM_DEFAULT].compareTo("%s-X.h5")==0);
- assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_SUPER], member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-s.h5")==0);
- assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_BTREE], member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-b.h5")==0);
- assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_DRAW], member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-r.h5")==0);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DEFAULT], member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == sH5FD_MEM_HADDR);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_SUPER], member_addr[HDF5Constants.H5FD_MEM_SUPER] == sH5FD_MEM_SUPER_HADDR);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_BTREE], member_addr[HDF5Constants.H5FD_MEM_BTREE] == sH5FD_MEM_BTREE_HADDR);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DRAW], member_addr[HDF5Constants.H5FD_MEM_DRAW] == sH5FD_MEM_DRAW_HADDR);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_GHEAP], member_addr[HDF5Constants.H5FD_MEM_GHEAP] == sH5FD_MEM_GHEAP_HADDR);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_LHEAP], member_addr[HDF5Constants.H5FD_MEM_LHEAP] == sH5FD_MEM_LHEAP_HADDR);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_OHDR], member_addr[HDF5Constants.H5FD_MEM_OHDR] == sH5FD_MEM_OHDR_HADDR);
+ assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_DEFAULT],
+ member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_DEFAULT);
+ assertTrue("H5Pget_fapl_muti: member_fapl ",
+ H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT],
+ HDF5Constants.H5P_FILE_ACCESS_DEFAULT));
+ assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_DEFAULT],
+ member_name[HDF5Constants.H5FD_MEM_DEFAULT].compareTo("%s-X.h5") == 0);
+ assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_SUPER],
+ member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-s.h5") == 0);
+ assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_BTREE],
+ member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-b.h5") == 0);
+ assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_DRAW],
+ member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-r.h5") == 0);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_DEFAULT],
+ member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == sH5FD_MEM_HADDR);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_SUPER],
+ member_addr[HDF5Constants.H5FD_MEM_SUPER] == sH5FD_MEM_SUPER_HADDR);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_BTREE],
+ member_addr[HDF5Constants.H5FD_MEM_BTREE] == sH5FD_MEM_BTREE_HADDR);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_DRAW],
+ member_addr[HDF5Constants.H5FD_MEM_DRAW] == sH5FD_MEM_DRAW_HADDR);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_GHEAP],
+ member_addr[HDF5Constants.H5FD_MEM_GHEAP] == sH5FD_MEM_GHEAP_HADDR);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_LHEAP],
+ member_addr[HDF5Constants.H5FD_MEM_LHEAP] == sH5FD_MEM_LHEAP_HADDR);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_OHDR],
+ member_addr[HDF5Constants.H5FD_MEM_OHDR] == sH5FD_MEM_OHDR_HADDR);
}
catch (Throwable err) {
err.printStackTrace();
@@ -969,20 +1102,21 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_fapl_muti() {
+ public void testH5P_fapl_muti()
+ {
if (HDF5Constants.H5FD_MULTI < 0)
return;
long HADDR_DEFAULT_SIZE = HDF5Constants.H5FD_DEFAULT_HADDR_SIZE;
- int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES];
- long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES];
- String[] member_name = new String[HDF5Constants.H5FD_MEM_NTYPES];
- long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES];
+ int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES];
+ long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES];
+ String[] member_name = new String[HDF5Constants.H5FD_MEM_NTYPES];
+ long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES];
- for(int mt=HDF5Constants.H5FD_MEM_DEFAULT; mt<HDF5Constants.H5FD_MEM_NTYPES; mt++) {
+ for (int mt = HDF5Constants.H5FD_MEM_DEFAULT; mt < HDF5Constants.H5FD_MEM_NTYPES; mt++) {
member_fapl[mt] = HDF5Constants.H5P_DEFAULT;
- member_map[mt] = HDF5Constants.H5FD_MEM_SUPER;
+ member_map[mt] = HDF5Constants.H5FD_MEM_SUPER;
}
- member_map[HDF5Constants.H5FD_MEM_DRAW] = HDF5Constants.H5FD_MEM_DRAW;
+ member_map[HDF5Constants.H5FD_MEM_DRAW] = HDF5Constants.H5FD_MEM_DRAW;
member_map[HDF5Constants.H5FD_MEM_BTREE] = HDF5Constants.H5FD_MEM_BTREE;
member_map[HDF5Constants.H5FD_MEM_GHEAP] = HDF5Constants.H5FD_MEM_GHEAP;
@@ -990,18 +1124,18 @@ public class TestH5Pfapl {
member_addr[HDF5Constants.H5FD_MEM_SUPER] = 0;
member_name[HDF5Constants.H5FD_MEM_BTREE] = new String("%s-btree.h5");
- member_addr[HDF5Constants.H5FD_MEM_BTREE] = HADDR_DEFAULT_SIZE/4;
+ member_addr[HDF5Constants.H5FD_MEM_BTREE] = HADDR_DEFAULT_SIZE / 4;
member_name[HDF5Constants.H5FD_MEM_DRAW] = new String("%s-draw.h5");
- member_addr[HDF5Constants.H5FD_MEM_DRAW] = HADDR_DEFAULT_SIZE/2;
+ member_addr[HDF5Constants.H5FD_MEM_DRAW] = HADDR_DEFAULT_SIZE / 2;
member_name[HDF5Constants.H5FD_MEM_GHEAP] = new String("%s-gheap.h5");
- member_addr[HDF5Constants.H5FD_MEM_GHEAP] = (HADDR_DEFAULT_SIZE/4)*3;
+ member_addr[HDF5Constants.H5FD_MEM_GHEAP] = (HADDR_DEFAULT_SIZE / 4) * 3;
try {
H5.H5Pset_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr, true);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: multi = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type);
+ assertTrue("H5Pget_driver: multi = " + driver_type, HDF5Constants.H5FD_MULTI == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1010,23 +1144,37 @@ public class TestH5Pfapl {
try {
boolean relax = H5.H5Pget_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr);
assertTrue("H5Pget_fapl_muti: relax ", relax);
- assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_DEFAULT], member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_SUPER);
- assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_DRAW], member_map[HDF5Constants.H5FD_MEM_DRAW] == HDF5Constants.H5FD_MEM_DRAW);
- assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_BTREE], member_map[HDF5Constants.H5FD_MEM_BTREE] == HDF5Constants.H5FD_MEM_BTREE);
- assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_GHEAP], member_map[HDF5Constants.H5FD_MEM_GHEAP] == HDF5Constants.H5FD_MEM_GHEAP);
-
- assertTrue("H5Pget_fapl_muti: member_fapl ", H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT], HDF5Constants.H5P_FILE_ACCESS_DEFAULT));
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DEFAULT], member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == 0);
- assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_SUPER], member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-super.h5")==0);
-
- assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_BTREE], member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-btree.h5")==0);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_BTREE], member_addr[HDF5Constants.H5FD_MEM_BTREE] == HADDR_DEFAULT_SIZE/4);
-
- assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_DRAW], member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-draw.h5")==0);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DRAW], member_addr[HDF5Constants.H5FD_MEM_DRAW] == HADDR_DEFAULT_SIZE/2);
-
- assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_GHEAP], member_name[HDF5Constants.H5FD_MEM_GHEAP].compareTo("%s-gheap.h5")==0);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_GHEAP], member_addr[HDF5Constants.H5FD_MEM_GHEAP] == (HADDR_DEFAULT_SIZE/4)*3);
+ assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_DEFAULT],
+ member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_SUPER);
+ assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_DRAW],
+ member_map[HDF5Constants.H5FD_MEM_DRAW] == HDF5Constants.H5FD_MEM_DRAW);
+ assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_BTREE],
+ member_map[HDF5Constants.H5FD_MEM_BTREE] == HDF5Constants.H5FD_MEM_BTREE);
+ assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_GHEAP],
+ member_map[HDF5Constants.H5FD_MEM_GHEAP] == HDF5Constants.H5FD_MEM_GHEAP);
+
+ assertTrue("H5Pget_fapl_muti: member_fapl ",
+ H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT],
+ HDF5Constants.H5P_FILE_ACCESS_DEFAULT));
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_DEFAULT],
+ member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == 0);
+ assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_SUPER],
+ member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-super.h5") == 0);
+
+ assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_BTREE],
+ member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-btree.h5") == 0);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_BTREE],
+ member_addr[HDF5Constants.H5FD_MEM_BTREE] == HADDR_DEFAULT_SIZE / 4);
+
+ assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_DRAW],
+ member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-draw.h5") == 0);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_DRAW],
+ member_addr[HDF5Constants.H5FD_MEM_DRAW] == HADDR_DEFAULT_SIZE / 2);
+
+ assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_GHEAP],
+ member_name[HDF5Constants.H5FD_MEM_GHEAP].compareTo("%s-gheap.h5") == 0);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_GHEAP],
+ member_addr[HDF5Constants.H5FD_MEM_GHEAP] == (HADDR_DEFAULT_SIZE / 4) * 3);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1035,7 +1183,8 @@ public class TestH5Pfapl {
_createH5multiFile(fapl_id);
try {
long file_size = H5.H5Fget_filesize(H5fid);
- assertTrue("H5Pget_fapl_muti: file_size ", file_size >= HADDR_DEFAULT_SIZE/4 || file_size <= HADDR_DEFAULT_SIZE/2);
+ assertTrue("H5Pget_fapl_muti: file_size ",
+ file_size >= HADDR_DEFAULT_SIZE / 4 || file_size <= HADDR_DEFAULT_SIZE / 2);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1043,67 +1192,71 @@ public class TestH5Pfapl {
}
_createH5multiFileDS();
deleteH5multifile();
- File file = new File(H5_MULTI_FILE+"-super.h5");
+ File file = new File(H5_MULTI_FILE + "-super.h5");
if (file.exists()) {
try {
file.delete();
}
catch (SecurityException e) {
- ;// e.printStackTrace();
+ ; // e.printStackTrace();
}
}
- file = new File(H5_MULTI_FILE+"-btree.h5");
+ file = new File(H5_MULTI_FILE + "-btree.h5");
if (file.exists()) {
try {
file.delete();
}
catch (SecurityException e) {
- ;// e.printStackTrace();
+ ; // e.printStackTrace();
}
}
- file = new File(H5_MULTI_FILE+"-draw.h5");
+ file = new File(H5_MULTI_FILE + "-draw.h5");
if (file.exists()) {
try {
file.delete();
}
catch (SecurityException e) {
- ;// e.printStackTrace();
+ ; // e.printStackTrace();
}
}
- file = new File(H5_MULTI_FILE+"-gheap.h5");
+ file = new File(H5_MULTI_FILE + "-gheap.h5");
if (file.exists()) {
try {
file.delete();
}
catch (SecurityException e) {
- ;// e.printStackTrace();
+ ; // e.printStackTrace();
}
}
}
@Test
- public void testH5P_fapl_split() {
+ public void testH5P_fapl_split()
+ {
if (HDF5Constants.H5FD_MULTI < 0)
return;
try {
- H5.H5Pset_fapl_split(fapl_id, "-meta.h5", HDF5Constants.H5P_DEFAULT, "-raw.h5", HDF5Constants.H5P_DEFAULT);
+ H5.H5Pset_fapl_split(fapl_id, "-meta.h5", HDF5Constants.H5P_DEFAULT, "-raw.h5",
+ HDF5Constants.H5P_DEFAULT);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: split = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type);
+ assertTrue("H5Pget_driver: split = " + driver_type, HDF5Constants.H5FD_MULTI == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pset_fapl_split: " + err);
}
try {
- int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES];
- long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES];
+ int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES];
+ long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES];
String[] member_name = new String[HDF5Constants.H5FD_MEM_NTYPES];
- long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES];
+ long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES];
boolean relax = H5.H5Pget_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr);
assertTrue("H5Pget_fapl_multi: relax ", relax);
- assertTrue("H5Pget_fapl_multi: member_name="+member_name[HDF5Constants.H5FD_MEM_SUPER], member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-meta.h5")==0);
- assertTrue("H5Pget_fapl_multi: member_name="+member_name[HDF5Constants.H5FD_MEM_DRAW], member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-raw.h5")==0);
+ assertTrue("H5Pget_fapl_multi: member_name=" + member_name[HDF5Constants.H5FD_MEM_SUPER],
+ member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-meta.h5") == 0);
+ assertTrue("H5Pget_fapl_multi: member_name=" + member_name[HDF5Constants.H5FD_MEM_DRAW],
+ member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-raw.h5") == 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1111,34 +1264,35 @@ public class TestH5Pfapl {
}
_createH5multiFile(fapl_id);
deleteH5multifile();
- File file = new File(H5_MULTI_FILE+"-meta.h5");
+ File file = new File(H5_MULTI_FILE + "-meta.h5");
if (file.exists()) {
try {
file.delete();
}
catch (SecurityException e) {
- ;// e.printStackTrace();
+ ; // e.printStackTrace();
}
}
- file = new File(H5_MULTI_FILE+"-raw.h5");
+ file = new File(H5_MULTI_FILE + "-raw.h5");
if (file.exists()) {
try {
file.delete();
}
catch (SecurityException e) {
- ;// e.printStackTrace();
+ ; // e.printStackTrace();
}
}
}
@Test
- public void testH5P_fapl_direct() {
+ public void testH5P_fapl_direct()
+ {
if (HDF5Constants.H5FD_DIRECT < 0)
return;
try {
- H5.H5Pset_fapl_direct(fapl_id, 1024, 4096, 8*4096);
+ H5.H5Pset_fapl_direct(fapl_id, 1024, 4096, 8 * 4096);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: direct = "+ driver_type, HDF5Constants.H5FD_DIRECT==driver_type);
+ assertTrue("H5Pget_driver: direct = " + driver_type, HDF5Constants.H5FD_DIRECT == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1147,9 +1301,9 @@ public class TestH5Pfapl {
try {
long[] params = {-1, -1, -1};
H5.H5Pget_fapl_direct(fapl_id, params);
- assertTrue("H5Pget_fapl_direct: alignment="+params[0], params[0]==1024);
- assertTrue("H5Pget_fapl_direct: block_size="+params[1], params[1]==4096);
- assertTrue("H5Pget_fapl_direct: cbuf_size="+params[2], params[2]==8*4096);
+ assertTrue("H5Pget_fapl_direct: alignment=" + params[0], params[0] == 1024);
+ assertTrue("H5Pget_fapl_direct: block_size=" + params[1], params[1] == 4096);
+ assertTrue("H5Pget_fapl_direct: cbuf_size=" + params[2], params[2] == 8 * 4096);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1160,13 +1314,14 @@ public class TestH5Pfapl {
}
@Test
- public void testH5Pset_fapl_windows() {
+ public void testH5Pset_fapl_windows()
+ {
if (HDF5Constants.H5FD_WINDOWS < 0)
return;
try {
H5.H5Pset_fapl_windows(fapl_id);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: windows = "+ driver_type, HDF5Constants.H5FD_WINDOWS==driver_type);
+ assertTrue("H5Pget_driver: windows = " + driver_type, HDF5Constants.H5FD_WINDOWS == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1177,19 +1332,20 @@ public class TestH5Pfapl {
}
@Test
- public void testH5Pmulti_transform() {
+ public void testH5Pmulti_transform()
+ {
if (HDF5Constants.H5FD_MULTI < 0)
return;
- String f_to_c = "(5/9.0)*(x-32)";
+ String f_to_c = "(5/9.0)*(x-32)";
double windchillFread[][] = new double[DIMF_X][DIMF_Y];
double windchillC;
NumberFormat formatter = new DecimalFormat("#0.000");
- long HADDRMAX = HDF5Constants.H5FD_DEFAULT_HADDR_SIZE;
+ long HADDRMAX = HDF5Constants.H5FD_DEFAULT_HADDR_SIZE;
- int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES];
- long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES];
+ int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES];
+ long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES];
String[] member_name = new String[HDF5Constants.H5FD_MEM_NTYPES];
- long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES];
+ long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES];
try {
H5.H5Pset_data_transform(plist_id, f_to_c);
@@ -1200,11 +1356,11 @@ public class TestH5Pfapl {
fail("H5Pdata_transform: " + err);
}
- for(int mt=HDF5Constants.H5FD_MEM_DEFAULT; mt<HDF5Constants.H5FD_MEM_NTYPES; mt++) {
+ for (int mt = HDF5Constants.H5FD_MEM_DEFAULT; mt < HDF5Constants.H5FD_MEM_NTYPES; mt++) {
member_fapl[mt] = HDF5Constants.H5P_DEFAULT;
- member_map[mt] = HDF5Constants.H5FD_MEM_SUPER;
+ member_map[mt] = HDF5Constants.H5FD_MEM_SUPER;
}
- member_map[HDF5Constants.H5FD_MEM_DRAW] = HDF5Constants.H5FD_MEM_DRAW;
+ member_map[HDF5Constants.H5FD_MEM_DRAW] = HDF5Constants.H5FD_MEM_DRAW;
member_map[HDF5Constants.H5FD_MEM_BTREE] = HDF5Constants.H5FD_MEM_BTREE;
member_map[HDF5Constants.H5FD_MEM_GHEAP] = HDF5Constants.H5FD_MEM_GHEAP;
@@ -1212,18 +1368,18 @@ public class TestH5Pfapl {
member_addr[HDF5Constants.H5FD_MEM_SUPER] = 0;
member_name[HDF5Constants.H5FD_MEM_BTREE] = new String("%s-btree.h5");
- member_addr[HDF5Constants.H5FD_MEM_BTREE] = HADDRMAX/4;
+ member_addr[HDF5Constants.H5FD_MEM_BTREE] = HADDRMAX / 4;
member_name[HDF5Constants.H5FD_MEM_DRAW] = new String("%s-draw.h5");
- member_addr[HDF5Constants.H5FD_MEM_DRAW] = HADDRMAX/2;
+ member_addr[HDF5Constants.H5FD_MEM_DRAW] = HADDRMAX / 2;
member_name[HDF5Constants.H5FD_MEM_GHEAP] = new String("%s-gheap.h5");
- member_addr[HDF5Constants.H5FD_MEM_GHEAP] = (HADDRMAX/4)*3;
+ member_addr[HDF5Constants.H5FD_MEM_GHEAP] = (HADDRMAX / 4) * 3;
try {
H5.H5Pset_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr, true);
long driver_type = H5.H5Pget_driver(fapl_id);
- assertTrue("H5Pget_driver: multi = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type);
+ assertTrue("H5Pget_driver: multi = " + driver_type, HDF5Constants.H5FD_MULTI == driver_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1232,23 +1388,37 @@ public class TestH5Pfapl {
try {
boolean relax = H5.H5Pget_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr);
assertTrue("H5Pget_fapl_muti: relax ", relax);
- assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_DEFAULT], member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_SUPER);
- assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_DRAW], member_map[HDF5Constants.H5FD_MEM_DRAW] == HDF5Constants.H5FD_MEM_DRAW);
- assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_BTREE], member_map[HDF5Constants.H5FD_MEM_BTREE] == HDF5Constants.H5FD_MEM_BTREE);
- assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_GHEAP], member_map[HDF5Constants.H5FD_MEM_GHEAP] == HDF5Constants.H5FD_MEM_GHEAP);
-
- assertTrue("H5Pget_fapl_muti: member_fapl ", H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT], HDF5Constants.H5P_FILE_ACCESS_DEFAULT));
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DEFAULT], member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == 0);
- assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_SUPER], member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-super.h5")==0);
-
- assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_BTREE], member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-btree.h5")==0);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_BTREE], member_addr[HDF5Constants.H5FD_MEM_BTREE] == HADDRMAX/4);
-
- assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_DRAW], member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-draw.h5")==0);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DRAW], member_addr[HDF5Constants.H5FD_MEM_DRAW] == HADDRMAX/2);
-
- assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_GHEAP], member_name[HDF5Constants.H5FD_MEM_GHEAP].compareTo("%s-gheap.h5")==0);
- assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_GHEAP], member_addr[HDF5Constants.H5FD_MEM_GHEAP] == (HADDRMAX/4)*3);
+ assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_DEFAULT],
+ member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_SUPER);
+ assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_DRAW],
+ member_map[HDF5Constants.H5FD_MEM_DRAW] == HDF5Constants.H5FD_MEM_DRAW);
+ assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_BTREE],
+ member_map[HDF5Constants.H5FD_MEM_BTREE] == HDF5Constants.H5FD_MEM_BTREE);
+ assertTrue("H5Pget_fapl_muti: member_map=" + member_map[HDF5Constants.H5FD_MEM_GHEAP],
+ member_map[HDF5Constants.H5FD_MEM_GHEAP] == HDF5Constants.H5FD_MEM_GHEAP);
+
+ assertTrue("H5Pget_fapl_muti: member_fapl ",
+ H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT],
+ HDF5Constants.H5P_FILE_ACCESS_DEFAULT));
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_DEFAULT],
+ member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == 0);
+ assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_SUPER],
+ member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-super.h5") == 0);
+
+ assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_BTREE],
+ member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-btree.h5") == 0);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_BTREE],
+ member_addr[HDF5Constants.H5FD_MEM_BTREE] == HADDRMAX / 4);
+
+ assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_DRAW],
+ member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-draw.h5") == 0);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_DRAW],
+ member_addr[HDF5Constants.H5FD_MEM_DRAW] == HADDRMAX / 2);
+
+ assertTrue("H5Pget_fapl_muti: member_name=" + member_name[HDF5Constants.H5FD_MEM_GHEAP],
+ member_name[HDF5Constants.H5FD_MEM_GHEAP].compareTo("%s-gheap.h5") == 0);
+ assertTrue("H5Pget_fapl_muti: member_addr=" + member_addr[HDF5Constants.H5FD_MEM_GHEAP],
+ member_addr[HDF5Constants.H5FD_MEM_GHEAP] == (HADDRMAX / 4) * 3);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1257,7 +1427,8 @@ public class TestH5Pfapl {
try {
_createH5multiFile(fapl_id);
long file_size = H5.H5Fget_filesize(H5fid);
- assertTrue("H5Pget_fapl_muti: file_size ", file_size >= HADDRMAX/4 || file_size <= HADDRMAX/2);
+ assertTrue("H5Pget_fapl_muti: file_size ",
+ file_size >= HADDRMAX / 4 || file_size <= HADDRMAX / 2);
_createH5multiFileDS();
_createFloatDataset();
}
@@ -1267,68 +1438,70 @@ public class TestH5Pfapl {
}
try {
H5.H5Dwrite(H5Fdid, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- plist_id, windchillF);
+ plist_id, windchillF);
H5.H5Dread(H5Fdid, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, windchillFread);
+ HDF5Constants.H5P_DEFAULT, windchillFread);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5Pdata_transform: " + err);
}
- for(int row = 0; row < DIMF_X; row++) {
- for(int col = 0; col < DIMF_Y; col++) {
- windchillC = (5/9.0)*(windchillF[row][col]-32);
- String Cstr = formatter.format(windchillC);
+ for (int row = 0; row < DIMF_X; row++) {
+ for (int col = 0; col < DIMF_Y; col++) {
+ windchillC = (5 / 9.0) * (windchillF[row][col] - 32);
+ String Cstr = formatter.format(windchillC);
String Fread = formatter.format(windchillFread[row][col]);
- assertTrue("H5Pdata_transform: <"+row+","+col+">"+Fread+"="+Cstr, Fread.compareTo(Cstr)==0);
+ assertTrue("H5Pdata_transform: <" + row + "," + col + ">" + Fread + "=" + Cstr,
+ Fread.compareTo(Cstr) == 0);
}
}
deleteH5multifile();
- File file = new File(H5_MULTI_FILE+"-super.h5");
+ File file = new File(H5_MULTI_FILE + "-super.h5");
if (file.exists()) {
try {
file.delete();
}
catch (SecurityException e) {
- ;// e.printStackTrace();
+ ; // e.printStackTrace();
}
}
- file = new File(H5_MULTI_FILE+"-btree.h5");
+ file = new File(H5_MULTI_FILE + "-btree.h5");
if (file.exists()) {
try {
file.delete();
}
catch (SecurityException e) {
- ;// e.printStackTrace();
+ ; // e.printStackTrace();
}
}
- file = new File(H5_MULTI_FILE+"-draw.h5");
+ file = new File(H5_MULTI_FILE + "-draw.h5");
if (file.exists()) {
try {
file.delete();
}
catch (SecurityException e) {
- ;// e.printStackTrace();
+ ; // e.printStackTrace();
}
}
- file = new File(H5_MULTI_FILE+"-gheap.h5");
+ file = new File(H5_MULTI_FILE + "-gheap.h5");
if (file.exists()) {
try {
file.delete();
}
catch (SecurityException e) {
- ;// e.printStackTrace();
+ ; // e.printStackTrace();
}
}
}
@Test
- public void testH5Fmdc_logging() {
+ public void testH5Fmdc_logging()
+ {
boolean[] mdc_logging_status = {false, false};
- boolean[] mdc_log_options = {false, false};
+ boolean[] mdc_log_options = {false, false};
try {
- boolean is_enabled = true;
+ boolean is_enabled = true;
boolean start_on_access = false;
H5.H5Pset_mdc_log_options(fapl_id, is_enabled, H5_LOG_FILE, start_on_access);
@@ -1336,7 +1509,8 @@ public class TestH5Pfapl {
assertTrue("H5.H5Pget_mdc_log_options: is_enabled", mdc_log_options[0]);
assertFalse("H5.H5Pget_mdc_log_options: start_on_access_out", mdc_log_options[1]);
- H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST, HDF5Constants.H5F_LIBVER_LATEST);
+ H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST,
+ HDF5Constants.H5F_LIBVER_LATEST);
}
catch (Throwable err) {
err.printStackTrace();
@@ -1370,7 +1544,7 @@ public class TestH5Pfapl {
catch (Throwable err) {
fail("stop H5.H5Fget_mdc_logging_status: " + err);
}
-// assertFalse("stop: is_enabled", mdc_logging_status[0]);
+ // assertFalse("stop: is_enabled", mdc_logging_status[0]);
assertFalse("stop: is_currently_logging", mdc_logging_status[1]);
deleteH5file();
@@ -1378,7 +1552,8 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_evict_on_close() {
+ public void testH5P_evict_on_close()
+ {
boolean ret_val_id = false;
try {
H5.H5Pset_evict_on_close(fapl_id, true);
@@ -1399,20 +1574,21 @@ public class TestH5Pfapl {
}
@Test
- public void testH5P_file_locking() {
- boolean use_file_locking = false;
+ public void testH5P_file_locking()
+ {
+ boolean use_file_locking = false;
boolean ignore_disabled_file_locking = false;
try {
// false values (usually not the default)
H5.H5Pset_file_locking(fapl_id, false, false);
- use_file_locking = H5.H5Pget_use_file_locking(fapl_id);
+ use_file_locking = H5.H5Pget_use_file_locking(fapl_id);
ignore_disabled_file_locking = H5.H5Pget_ignore_disabled_file_locking(fapl_id);
assertFalse("H5P_file_locking", use_file_locking);
assertFalse("H5P_file_locking", ignore_disabled_file_locking);
// true values (typically the default)
H5.H5Pset_file_locking(fapl_id, true, true);
- use_file_locking = H5.H5Pget_use_file_locking(fapl_id);
+ use_file_locking = H5.H5Pget_use_file_locking(fapl_id);
ignore_disabled_file_locking = H5.H5Pget_ignore_disabled_file_locking(fapl_id);
assertTrue("H5P_file_locking", use_file_locking);
assertTrue("H5P_file_locking", ignore_disabled_file_locking);
diff --git a/java/test/TestH5Pfaplhdfs.java b/java/test/TestH5Pfaplhdfs.java
index d922666..e99967b 100644
--- a/java/test/TestH5Pfaplhdfs.java
+++ b/java/test/TestH5Pfaplhdfs.java
@@ -31,12 +31,13 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Pfaplhdfs {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
- long fapl_id = HDF5Constants.H5I_INVALID_HID;
- long plapl_id = HDF5Constants.H5I_INVALID_HID;
- long dapl_id = HDF5Constants.H5I_INVALID_HID;
- long plist_id = HDF5Constants.H5I_INVALID_HID;
+ long fapl_id = HDF5Constants.H5I_INVALID_HID;
+ long plapl_id = HDF5Constants.H5I_INVALID_HID;
+ long dapl_id = HDF5Constants.H5I_INVALID_HID;
+ long plist_id = HDF5Constants.H5I_INVALID_HID;
long btplist_id = HDF5Constants.H5I_INVALID_HID;
@Before
@@ -62,9 +63,9 @@ public class TestH5Pfaplhdfs {
}
assertTrue(plapl_id > 0);
try {
- plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
+ plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
btplist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
- dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
+ dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
}
catch (Throwable err) {
err.printStackTrace();
@@ -79,15 +80,35 @@ public class TestH5Pfaplhdfs {
public void deleteFileAccess() throws HDF5LibraryException
{
if (fapl_id > 0)
- try {H5.H5Pclose(fapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(fapl_id);
+ }
+ catch (Exception ex) {
+ }
if (plapl_id > 0)
- try {H5.H5Pclose(plapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(plapl_id);
+ }
+ catch (Exception ex) {
+ }
if (dapl_id > 0)
- try {H5.H5Pclose(dapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(dapl_id);
+ }
+ catch (Exception ex) {
+ }
if (plist_id > 0)
- try {H5.H5Pclose(plist_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(plist_id);
+ }
+ catch (Exception ex) {
+ }
if (btplist_id > 0)
- try {H5.H5Pclose(btplist_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(btplist_id);
+ }
+ catch (Exception ex) {
+ }
System.out.println();
}
@@ -97,19 +118,21 @@ public class TestH5Pfaplhdfs {
if (HDF5Constants.H5FD_HDFS < 0)
throw new HDF5LibraryException("skip");
- String nodename = "blues";
- int nodeport = 12345;
- String username = "sparticus";
+ String nodename = "blues";
+ int nodeport = 12345;
+ String username = "sparticus";
String kerbcache = "/dev/null";
- int streamsize = 1024;
+ int streamsize = 1024;
- final H5FD_hdfs_fapl_t config = new H5FD_hdfs_fapl_t(nodename, nodeport, username, kerbcache, streamsize);
+ final H5FD_hdfs_fapl_t config =
+ new H5FD_hdfs_fapl_t(nodename, nodeport, username, kerbcache, streamsize);
assertTrue("setting fapl should succeed", -1 < H5.H5Pset_fapl_hdfs(fapl_id, config));
assertEquals("driver types should match", HDF5Constants.H5FD_HDFS, H5.H5Pget_driver(fapl_id));
H5FD_hdfs_fapl_t copy = H5.H5Pget_fapl_hdfs(fapl_id);
- assertEquals("fapl contents should match", new H5FD_hdfs_fapl_t(nodename, nodeport, username, kerbcache, streamsize), copy);
+ assertEquals("fapl contents should match",
+ new H5FD_hdfs_fapl_t(nodename, nodeport, username, kerbcache, streamsize), copy);
}
@Test(expected = HDF5LibraryException.class)
@@ -125,13 +148,12 @@ public class TestH5Pfaplhdfs {
{
if (HDF5Constants.H5FD_HDFS < 0)
throw new HDF5LibraryException("skip");
- if (HDF5Constants.H5FD_SEC2 < 0 )
+ if (HDF5Constants.H5FD_SEC2 < 0)
throw new HDF5LibraryException("skip");
- /* TODO: for now, test against a sec2 fapl only */
+ /* TODO: for now, test against a sec2 fapl only */
H5.H5Pset_fapl_sec2(fapl_id);
assertEquals("fapl_id was not set properly", HDF5Constants.H5FD_SEC2, H5.H5Pget_driver(fapl_id));
H5FD_hdfs_fapl_t fails = H5.H5Pget_fapl_hdfs(fapl_id);
}
-
}
diff --git a/java/test/TestH5Pfapls3.java b/java/test/TestH5Pfapls3.java
index dda2716..06baef2 100644
--- a/java/test/TestH5Pfapls3.java
+++ b/java/test/TestH5Pfapls3.java
@@ -31,12 +31,13 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Pfapls3 {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
- long fapl_id = HDF5Constants.H5I_INVALID_HID;
- long plapl_id = HDF5Constants.H5I_INVALID_HID;
- long dapl_id = HDF5Constants.H5I_INVALID_HID;
- long plist_id = HDF5Constants.H5I_INVALID_HID;
+ long fapl_id = HDF5Constants.H5I_INVALID_HID;
+ long plapl_id = HDF5Constants.H5I_INVALID_HID;
+ long dapl_id = HDF5Constants.H5I_INVALID_HID;
+ long plist_id = HDF5Constants.H5I_INVALID_HID;
long btplist_id = HDF5Constants.H5I_INVALID_HID;
@Before
@@ -62,9 +63,9 @@ public class TestH5Pfapls3 {
}
assertTrue(plapl_id > 0);
try {
- plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
+ plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
btplist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
- dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
+ dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
}
catch (Throwable err) {
err.printStackTrace();
@@ -79,15 +80,35 @@ public class TestH5Pfapls3 {
public void deleteFileAccess() throws HDF5LibraryException
{
if (fapl_id > 0)
- try {H5.H5Pclose(fapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(fapl_id);
+ }
+ catch (Exception ex) {
+ }
if (plapl_id > 0)
- try {H5.H5Pclose(plapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(plapl_id);
+ }
+ catch (Exception ex) {
+ }
if (dapl_id > 0)
- try {H5.H5Pclose(dapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(dapl_id);
+ }
+ catch (Exception ex) {
+ }
if (plist_id > 0)
- try {H5.H5Pclose(plist_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(plist_id);
+ }
+ catch (Exception ex) {
+ }
if (btplist_id > 0)
- try {H5.H5Pclose(btplist_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(btplist_id);
+ }
+ catch (Exception ex) {
+ }
System.out.println();
}
@@ -98,18 +119,15 @@ public class TestH5Pfapls3 {
return;
final H5FD_ros3_fapl_t config = new H5FD_ros3_fapl_t();
- assertEquals("Default fapl has unexpected contents",
- new H5FD_ros3_fapl_t("", "", ""), config);
+ assertEquals("Default fapl has unexpected contents", new H5FD_ros3_fapl_t("", "", ""), config);
H5.H5Pset_fapl_ros3(fapl_id, config);
- assertEquals("driver types don't match",
- HDF5Constants.H5FD_ROS3, H5.H5Pget_driver(fapl_id));
+ assertEquals("driver types don't match", HDF5Constants.H5FD_ROS3, H5.H5Pget_driver(fapl_id));
/* get_fapl_ros3 can throw exception in error cases */
H5FD_ros3_fapl_t copy = H5.H5Pget_fapl_ros3(fapl_id);
- assertEquals("contents of fapl set and get don't match",
- new H5FD_ros3_fapl_t("", "", ""), copy);
+ assertEquals("contents of fapl set and get don't match", new H5FD_ros3_fapl_t("", "", ""), copy);
}
@Test(expected = HDF5LibraryException.class)
@@ -125,13 +143,12 @@ public class TestH5Pfapls3 {
{
if (HDF5Constants.H5FD_ROS3 < 0)
throw new HDF5LibraryException("skip");
- if (HDF5Constants.H5FD_SEC2 < 0 )
+ if (HDF5Constants.H5FD_SEC2 < 0)
throw new HDF5LibraryException("skip");
- /* TODO: for now, test against a sec2 fapl only */
+ /* TODO: for now, test against a sec2 fapl only */
H5.H5Pset_fapl_sec2(fapl_id);
- assertEquals("fapl_id was not set properly",
- HDF5Constants.H5FD_SEC2, H5.H5Pget_driver(fapl_id));
+ assertEquals("fapl_id was not set properly", HDF5Constants.H5FD_SEC2, H5.H5Pget_driver(fapl_id));
H5FD_ros3_fapl_t fails = H5.H5Pget_fapl_ros3(fapl_id);
}
@@ -147,12 +164,10 @@ public class TestH5Pfapls3 {
final H5FD_ros3_fapl_t config = new H5FD_ros3_fapl_t(region, acc_id, acc_key);
H5.H5Pset_fapl_ros3(fapl_id, config);
- assertEquals("driver types don't match",
- HDF5Constants.H5FD_ROS3, H5.H5Pget_driver(fapl_id));
+ assertEquals("driver types don't match", HDF5Constants.H5FD_ROS3, H5.H5Pget_driver(fapl_id));
H5FD_ros3_fapl_t copy = H5.H5Pget_fapl_ros3(fapl_id);
assertEquals("contents of fapl set and get don't match",
- new H5FD_ros3_fapl_t(region, acc_id, acc_key), copy);
+ new H5FD_ros3_fapl_t(region, acc_id, acc_key), copy);
}
-
}
diff --git a/java/test/TestH5Plist.java b/java/test/TestH5Plist.java
index 03e1c8f..d8a429b 100644
--- a/java/test/TestH5Plist.java
+++ b/java/test/TestH5Plist.java
@@ -17,11 +17,11 @@ import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
-import java.util.ArrayList;
import java.io.File;
+import java.nio.charset.StandardCharsets;
import java.text.DecimalFormat;
import java.text.NumberFormat;
-import java.nio.charset.StandardCharsets;
+import java.util.ArrayList;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
@@ -32,15 +32,15 @@ import hdf.hdf5lib.callbacks.H5P_cls_copy_func_cb;
import hdf.hdf5lib.callbacks.H5P_cls_copy_func_t;
import hdf.hdf5lib.callbacks.H5P_cls_create_func_cb;
import hdf.hdf5lib.callbacks.H5P_cls_create_func_t;
-import hdf.hdf5lib.callbacks.H5P_prp_set_func_cb;
-import hdf.hdf5lib.callbacks.H5P_prp_get_func_cb;
-import hdf.hdf5lib.callbacks.H5P_prp_delete_func_cb;
-import hdf.hdf5lib.callbacks.H5P_prp_copy_func_cb;
-import hdf.hdf5lib.callbacks.H5P_prp_compare_func_cb;
-import hdf.hdf5lib.callbacks.H5P_prp_close_func_cb;
-import hdf.hdf5lib.callbacks.H5P_prp_create_func_cb;
import hdf.hdf5lib.callbacks.H5P_iterate_cb;
import hdf.hdf5lib.callbacks.H5P_iterate_t;
+import hdf.hdf5lib.callbacks.H5P_prp_close_func_cb;
+import hdf.hdf5lib.callbacks.H5P_prp_compare_func_cb;
+import hdf.hdf5lib.callbacks.H5P_prp_copy_func_cb;
+import hdf.hdf5lib.callbacks.H5P_prp_create_func_cb;
+import hdf.hdf5lib.callbacks.H5P_prp_delete_func_cb;
+import hdf.hdf5lib.callbacks.H5P_prp_get_func_cb;
+import hdf.hdf5lib.callbacks.H5P_prp_set_func_cb;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.structs.H5AC_cache_config_t;
@@ -52,7 +52,8 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Plist {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
// Property definitions
private static final String CLASS1_NAME = "Class 1";
@@ -63,33 +64,31 @@ public class TestH5Plist {
// Property definitions
private static final String PROP1_NAME = "Property 1";
- private static final int prop1_def = 10; // Property 1 default value
- private static final int PROP1_SIZE = 2;
+ private static final int prop1_def = 10; // Property 1 default value
+ private static final int PROP1_SIZE = 2;
private static final String PROP2_NAME = "Property 2";
- private static final float prop2_def = 3.14F; // Property 2 default value
- private static final int PROP2_SIZE = 8;
+ private static final float prop2_def = 3.14F; // Property 2 default value
+ private static final int PROP2_SIZE = 8;
- private static final String PROP3_NAME = "Property 3";
- private static final char[] prop3_def = {'T','e','n',' ','c','h','a','r','s',' '}; // Property 3 default value
- private static final int PROP3_SIZE = 10;
+ private static final String PROP3_NAME = "Property 3";
+ private static final char[] prop3_def = {'T', 'e', 'n', ' ', 'c',
+ 'h', 'a', 'r', 's', ' '}; // Property 3 default value
+ private static final int PROP3_SIZE = 10;
- private static final String PROP4_NAME = "Property 4";
- private static final double prop4_def = 1.41F; // Property 4 default value
- private static final int PROP4_SIZE = 8;
+ private static final String PROP4_NAME = "Property 4";
+ private static final double prop4_def = 1.41F; // Property 4 default value
+ private static final int PROP4_SIZE = 8;
- private static final String [] pnames = { // Names of properties for iterator
- PROP1_NAME,
- PROP2_NAME,
- PROP3_NAME,
- PROP4_NAME};
+ private static final String[] pnames = { // Names of properties for iterator
+ PROP1_NAME, PROP2_NAME, PROP3_NAME, PROP4_NAME};
long plist_class_id = HDF5Constants.H5I_INVALID_HID;
@Before
- public void createPropClass()throws NullPointerException, HDF5Exception
+ public void createPropClass() throws NullPointerException, HDF5Exception
{
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
// Create a new generic class, derived from the root of the class hierarchy
try {
@@ -103,20 +102,26 @@ public class TestH5Plist {
}
@After
- public void deleteFileAccess() throws HDF5LibraryException {
+ public void deleteFileAccess() throws HDF5LibraryException
+ {
if (plist_class_id > 0)
- try {H5.H5Pclose(plist_class_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(plist_class_id);
+ }
+ catch (Exception ex) {
+ }
System.out.println();
}
// Test basic generic property list code. Tests creating new generic classes.
@Test
- public void testH5P_genprop_basic_class() {
- int status = -1;
- long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
- long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
- long cid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
- String name = null; // Name of class
+ public void testH5P_genprop_basic_class()
+ {
+ int status = -1;
+ long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
+ long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
+ long cid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
+ String name = null; // Name of class
try {
// Check class name
@@ -127,7 +132,8 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_class_name plist_class_id: " + err);
}
- assertTrue("Class names don't match!, "+name+"="+CLASS1_NAME+"\n", name.compareTo(CLASS1_NAME)==0);
+ assertTrue("Class names don't match!, " + name + "=" + CLASS1_NAME + "\n",
+ name.compareTo(CLASS1_NAME) == 0);
// Check class parent
try {
@@ -196,7 +202,8 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_class_name cid1: " + err);
}
- assertTrue("Class names don't match!, "+name+"="+CLASS2_NAME+"\n", name.compareTo(CLASS2_NAME)==0);
+ assertTrue("Class names don't match!, " + name + "=" + CLASS2_NAME + "\n",
+ name.compareTo(CLASS2_NAME) == 0);
// Check class parent
try {
@@ -270,20 +277,33 @@ public class TestH5Plist {
}
finally {
if (cid3 > 0)
- try {H5.H5Pclose_class(cid3);} catch (Throwable err) {}
+ try {
+ H5.H5Pclose_class(cid3);
+ }
+ catch (Throwable err) {
+ }
if (cid2 > 0)
- try {H5.H5Pclose_class(cid2);} catch (Throwable err) {}
+ try {
+ H5.H5Pclose_class(cid2);
+ }
+ catch (Throwable err) {
+ }
if (cid1 > 0)
- try {H5.H5Pclose_class(cid1);} catch (Throwable err) {}
+ try {
+ H5.H5Pclose_class(cid1);
+ }
+ catch (Throwable err) {
+ }
}
}
// Test basic generic property list code. Tests adding properties to generic classes.
@Test
- public void testH5P_genprop_basic_class_prop() {
- boolean status = false;
- long size = -1; // Generic Property size
- long nprops = -1; // Generic Property class number
+ public void testH5P_genprop_basic_class_prop()
+ {
+ boolean status = false;
+ long size = -1; // Generic Property size
+ long nprops = -1; // Generic Property class number
// Check the number of properties in class
try {
@@ -293,7 +313,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_nprops plist_class_id: " + err);
}
- assertTrue("H5Pget_nprops: "+nprops, nprops==0);
+ assertTrue("H5Pget_nprops: " + nprops, nprops == 0);
// Check the existence of the first property (should fail)
try {
@@ -303,7 +323,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pexist plist_class_id: " + err);
}
- assertFalse("H5Pexist plist_class_id "+PROP1_NAME, status);
+ assertFalse("H5Pexist plist_class_id " + PROP1_NAME, status);
// Insert first property into class (with no callbacks)
try {
@@ -313,7 +333,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Pregister2 plist_class_id: "+PROP1_NAME + err);
+ fail("H5Pregister2 plist_class_id: " + PROP1_NAME + err);
}
// Try to insert the first property again (should fail)
@@ -321,7 +341,7 @@ public class TestH5Plist {
byte[] prop_value = HDFNativeData.intToByte(prop1_def);
H5.H5Pregister2_nocb(plist_class_id, PROP1_NAME, PROP1_SIZE, prop_value);
- fail("H5Pregister2 plist_class_id: "+PROP1_NAME);
+ fail("H5Pregister2 plist_class_id: " + PROP1_NAME);
}
catch (Throwable err) {
}
@@ -334,7 +354,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pexist plist_class_id: " + err);
}
- assertTrue("H5Pexist plist_class_id "+PROP1_NAME, status);
+ assertTrue("H5Pexist plist_class_id " + PROP1_NAME, status);
// Check the size of the first property
try {
@@ -344,7 +364,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_size PROP1_NAME: " + err);
}
- assertTrue("H5Pget_size "+PROP1_NAME +" size: "+size, size == PROP1_SIZE);
+ assertTrue("H5Pget_size " + PROP1_NAME + " size: " + size, size == PROP1_SIZE);
// Check the number of properties in class
try {
@@ -354,7 +374,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_nprops plist_class_id: " + err);
}
- assertTrue("H5Pget_nprops: "+nprops, nprops==1);
+ assertTrue("H5Pget_nprops: " + nprops, nprops == 1);
// Insert second property into class (with no callbacks)
try {
@@ -364,7 +384,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Pregister2 plist_class_id: "+PROP2_NAME + err);
+ fail("H5Pregister2 plist_class_id: " + PROP2_NAME + err);
}
// Try to insert the second property again (should fail)
@@ -372,7 +392,7 @@ public class TestH5Plist {
byte[] prop_value = HDFNativeData.floatToByte(prop2_def);
H5.H5Pregister2_nocb(plist_class_id, PROP2_NAME, PROP2_SIZE, prop_value);
- fail("H5Pregister2 plist_class_id: "+PROP2_NAME);
+ fail("H5Pregister2 plist_class_id: " + PROP2_NAME);
}
catch (Throwable err) {
}
@@ -385,7 +405,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pexist plist_class_id: " + err);
}
- assertTrue("H5Pexist plist_class_id "+PROP2_NAME, status);
+ assertTrue("H5Pexist plist_class_id " + PROP2_NAME, status);
// Check the size of the second property
try {
@@ -395,7 +415,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_size PROP2_NAME: " + err);
}
- assertTrue("H5Pget_size "+PROP2_NAME +" size: "+size, size == PROP2_SIZE);
+ assertTrue("H5Pget_size " + PROP2_NAME + " size: " + size, size == PROP2_SIZE);
// Check the number of properties in class
try {
@@ -405,7 +425,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_nprops plist_class_id: " + err);
}
- assertTrue("H5Pget_nprops: "+nprops, nprops==2);
+ assertTrue("H5Pget_nprops: " + nprops, nprops == 2);
// Insert third property into class (with no callbacks)
try {
@@ -415,7 +435,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Pregister2 plist_class_id: "+PROP3_NAME + err);
+ fail("H5Pregister2 plist_class_id: " + PROP3_NAME + err);
}
// Check the existence of the third property
@@ -426,7 +446,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pexist plist_class_id: " + err);
}
- assertTrue("H5Pexist plist_class_id "+PROP3_NAME, status);
+ assertTrue("H5Pexist plist_class_id " + PROP3_NAME, status);
// Check the size of the third property
try {
@@ -436,7 +456,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_size PROP3_NAME: " + err);
}
- assertTrue("H5Pget_size "+PROP3_NAME +" size: "+size, size == PROP3_SIZE);
+ assertTrue("H5Pget_size " + PROP3_NAME + " size: " + size, size == PROP3_SIZE);
// Check the number of properties in class
try {
@@ -446,7 +466,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_nprops plist_class_id: " + err);
}
- assertTrue("H5Pget_nprops: "+nprops, nprops==3);
+ assertTrue("H5Pget_nprops: " + nprops, nprops == 3);
// Unregister first property
try {
@@ -454,7 +474,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Punregister plist_class_id: "+PROP1_NAME + err);
+ fail("H5Punregister plist_class_id: " + PROP1_NAME + err);
}
// Try to check the size of the first property (should fail)
@@ -473,7 +493,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_nprops plist_class_id: " + err);
}
- assertTrue("H5Pget_nprops: "+nprops, nprops==2);
+ assertTrue("H5Pget_nprops: " + nprops, nprops == 2);
// Unregister second property
try {
@@ -481,7 +501,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Punregister plist_class_id: "+PROP2_NAME + err);
+ fail("H5Punregister plist_class_id: " + PROP2_NAME + err);
}
// Check the number of properties in class
@@ -492,7 +512,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_nprops plist_class_id: " + err);
}
- assertTrue("H5Pget_nprops: "+nprops, nprops==1);
+ assertTrue("H5Pget_nprops: " + nprops, nprops == 1);
// Unregister third property
try {
@@ -500,7 +520,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Punregister plist_class_id: "+PROP3_NAME + err);
+ fail("H5Punregister plist_class_id: " + PROP3_NAME + err);
}
// Check the number of properties in class
@@ -511,16 +531,18 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_nprops plist_class_id: " + err);
}
- assertTrue("H5Pget_nprops: "+nprops, nprops==0);
+ assertTrue("H5Pget_nprops: " + nprops, nprops == 0);
}
// Test basic generic property list code. Tests iterating over properties in a generic class.
@Test
- public void testH5P_genprop_class_iter() {
+ public void testH5P_genprop_class_iter()
+ {
class idata {
- public String[] iter_names= null;
- public int iter_count = -1;
- idata(String[] names, int count) {
+ public String[] iter_names = null;
+ public int iter_count = -1;
+ idata(String[] names, int count)
+ {
this.iter_names = names;
this.iter_count = count;
}
@@ -531,16 +553,17 @@ public class TestH5Plist {
H5P_iterate_t iter_data = new H5P_iter_data();
class H5P_iter_callback implements H5P_iterate_cb {
- public int callback(long list_id, String name, H5P_iterate_t op_data) {
+ public int callback(long list_id, String name, H5P_iterate_t op_data)
+ {
idata id = ((H5P_iter_data)op_data).iterdata.get(0);
return name.compareTo(id.iter_names[id.iter_count++]);
}
}
H5P_iterate_cb iter_cb = new H5P_iter_callback();
- long size = -1; // Generic Property size
- long nprops = -1; // Generic Property class number
- int[] idx = {0}; // Index to start iteration at
+ long size = -1; // Generic Property size
+ long nprops = -1; // Generic Property class number
+ int[] idx = {0}; // Index to start iteration at
// Insert first property into class (with no callbacks) */
try {
@@ -550,7 +573,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Pregister2 plist_class_id: "+PROP1_NAME + err);
+ fail("H5Pregister2 plist_class_id: " + PROP1_NAME + err);
}
// Insert second property into class (with no callbacks) */
@@ -561,7 +584,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Pregister2 plist_class_id: "+PROP2_NAME + err);
+ fail("H5Pregister2 plist_class_id: " + PROP2_NAME + err);
}
// Insert third property into class (with no callbacks) */
@@ -572,7 +595,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Pregister2 plist_class_id: "+PROP3_NAME + err);
+ fail("H5Pregister2 plist_class_id: " + PROP3_NAME + err);
}
// Insert fourth property into class (with no callbacks) */
@@ -583,7 +606,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Pregister2 plist_class_id: "+PROP4_NAME + err);
+ fail("H5Pregister2 plist_class_id: " + PROP4_NAME + err);
}
// Check the number of properties in class */
@@ -594,7 +617,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_nprops plist_class_id: " + err);
}
- assertTrue("H5Pget_nprops: "+nprops, nprops==4);
+ assertTrue("H5Pget_nprops: " + nprops, nprops == 4);
// Iterate over all properties in class */
idata id = new idata(pnames, 0);
@@ -606,12 +629,14 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5.H5Piterate: " + err);
}
- assertFalse("H5Piterate ",((H5P_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Piterate "+((H5P_iter_data)iter_data).iterdata.size(),((H5P_iter_data)iter_data).iterdata.size()==1);
- assertTrue("H5Piterate "+(((H5P_iter_data)iter_data).iterdata.get(0)).iter_count,((idata)((H5P_iter_data)iter_data).iterdata.get(0)).iter_count==4);
+ assertFalse("H5Piterate ", ((H5P_iter_data)iter_data).iterdata.isEmpty());
+ assertTrue("H5Piterate " + ((H5P_iter_data)iter_data).iterdata.size(),
+ ((H5P_iter_data)iter_data).iterdata.size() == 1);
+ assertTrue("H5Piterate " + (((H5P_iter_data)iter_data).iterdata.get(0)).iter_count,
+ ((idata)((H5P_iter_data)iter_data).iterdata.get(0)).iter_count == 4);
// Iterate over last three properties in class */
- idx[0] = 1;
+ idx[0] = 1;
((H5P_iter_data)iter_data).iterdata.get(0).iter_count = 1;
try {
H5.H5Piterate(plist_class_id, idx, iter_cb, iter_data);
@@ -620,21 +645,24 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5.H5Piterate: " + err);
}
- assertFalse("H5Piterate ",((H5P_iter_data)iter_data).iterdata.isEmpty());
- assertTrue("H5Piterate "+((H5P_iter_data)iter_data).iterdata.size(),((H5P_iter_data)iter_data).iterdata.size()==1);
- assertTrue("H5Piterate "+(((H5P_iter_data)iter_data).iterdata.get(0)).iter_count,((idata)((H5P_iter_data)iter_data).iterdata.get(0)).iter_count==4);
+ assertFalse("H5Piterate ", ((H5P_iter_data)iter_data).iterdata.isEmpty());
+ assertTrue("H5Piterate " + ((H5P_iter_data)iter_data).iterdata.size(),
+ ((H5P_iter_data)iter_data).iterdata.size() == 1);
+ assertTrue("H5Piterate " + (((H5P_iter_data)iter_data).iterdata.get(0)).iter_count,
+ ((idata)((H5P_iter_data)iter_data).iterdata.get(0)).iter_count == 4);
- assertTrue("H5Piterate: "+nprops+"="+idx[0], nprops == idx[0]);
+ assertTrue("H5Piterate: " + nprops + "=" + idx[0], nprops == idx[0]);
}
// Test basic generic property list code.
// Tests creating new generic property lists and adding and
// removing properties from them.
@Test
- public void testH5P_genprop_basic_list_prop() {
- boolean status = false;
- long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
- long nprops = -1; // Number of properties in class
+ public void testH5P_genprop_basic_list_prop()
+ {
+ boolean status = false;
+ long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
+ long nprops = -1; // Number of properties in class
try {
// Add several properties (several w/default values)
@@ -647,7 +675,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Pregister2 plist_class_id: "+PROP1_NAME + err);
+ fail("H5Pregister2 plist_class_id: " + PROP1_NAME + err);
}
// Insert second property into class (with no callbacks)
@@ -658,7 +686,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Pregister2 plist_class_id: "+PROP2_NAME + err);
+ fail("H5Pregister2 plist_class_id: " + PROP2_NAME + err);
}
// Create a property list from the class
@@ -678,7 +706,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_nprops lid1: " + err);
}
- assertTrue("H5Pget_nprops: "+nprops, nprops==2);
+ assertTrue("H5Pget_nprops: " + nprops, nprops == 2);
// Add temporary properties
@@ -690,7 +718,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Pinsertr2 lid1: "+PROP3_NAME + err);
+ fail("H5Pinsertr2 lid1: " + PROP3_NAME + err);
}
// Insert second temporary property into list (with no callbacks)
@@ -701,7 +729,7 @@ public class TestH5Plist {
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5Pinsert2 lid1: "+PROP4_NAME + err);
+ fail("H5Pinsert2 lid1: " + PROP4_NAME + err);
}
// Check the number of properties in class
@@ -712,7 +740,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pget_nprops lid1: " + err);
}
- assertTrue("H5Pget_nprops: "+nprops, nprops==4);
+ assertTrue("H5Pget_nprops: " + nprops, nprops == 4);
// Check existence of all properties
try {
@@ -722,7 +750,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pexist plist_class_id: " + err);
}
- assertTrue("H5Pexist lid1 "+PROP1_NAME, status);
+ assertTrue("H5Pexist lid1 " + PROP1_NAME, status);
try {
status = H5.H5Pexist(lid1, PROP2_NAME);
}
@@ -730,7 +758,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pexist plist_class_id: " + err);
}
- assertTrue("H5Pexist lid1 "+PROP2_NAME, status);
+ assertTrue("H5Pexist lid1 " + PROP2_NAME, status);
try {
status = H5.H5Pexist(lid1, PROP3_NAME);
}
@@ -738,7 +766,7 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pexist plist_class_id: " + err);
}
- assertTrue("H5Pexist lid1 "+PROP3_NAME, status);
+ assertTrue("H5Pexist lid1 " + PROP3_NAME, status);
try {
status = H5.H5Pexist(lid1, PROP4_NAME);
}
@@ -746,265 +774,279 @@ public class TestH5Plist {
err.printStackTrace();
fail("H5Pexist plist_class_id: " + err);
}
- assertTrue("H5Pexist lid1 "+PROP4_NAME, status);
-
+ assertTrue("H5Pexist lid1 " + PROP4_NAME, status);
}
finally {
if (lid1 > 0)
- try {H5.H5Pclose(lid1);} catch (Throwable err) {}
+ try {
+ H5.H5Pclose(lid1);
+ }
+ catch (Throwable err) {
+ }
}
}
-// // Test basic generic property list code. Tests callbacks for property lists in a generic class.
-// @Test
-// public void testH5P_genprop_class_callback() {
-// class cdata {
-// public long cls_id = HDF5Constants.H5I_INVALID_HID;
-// public int cls_count = -1;
-// cdata(long id, int count) {
-// this.cls_id = id;
-// this.cls_count = count;
-// }
-// }
-// class H5P_cls_create_data implements H5P_cls_create_func_t {
-// public ArrayList<cdata> clsdata = new ArrayList<cdata>();
-// }
-// H5P_cls_create_func_t cls_create_data = new H5P_cls_create_data();
-//
-// class H5P_cls_create_callback implements H5P_cls_create_func_cb {
-// public int callback(long list_id, H5P_cls_create_func_t cls_data) {
-// System.err.println("H5P_cls_create_callback enter");
-// cdata cd = ((H5P_cls_create_data)cls_create_data).clsdata.get(0);
-// cd.cls_count++;
-// cd.cls_id = list_id;
-// return 0;
-// }
-// }
-// H5P_cls_create_func_cb cls_create_cb = new H5P_cls_create_callback();
-//
-// class H5P_cls_copy_data implements H5P_cls_copy_func_t {
-// public ArrayList<cdata> clsdata = new ArrayList<cdata>();
-// }
-// H5P_cls_copy_func_t cls_copy_data = new H5P_cls_copy_data();
-//
-// class H5P_cls_copy_callback implements H5P_cls_copy_func_cb {
-// public int callback(long list_id1, long list_id2, H5P_cls_copy_func_t cls_data) {
-// cdata cd = ((H5P_cls_copy_data)cls_copy_data).clsdata.get(0);
-// cd.cls_count++;
-// cd.cls_id = list_id1;
-// return 0;
-// }
-// }
-// H5P_cls_copy_func_cb cls_copy_cb = new H5P_cls_copy_callback();
-//
-// class H5P_cls_close_data implements H5P_cls_close_func_t {
-// public ArrayList<cdata> clsdata = new ArrayList<cdata>();
-// }
-// H5P_cls_close_func_t cls_close_data = new H5P_cls_close_data();
-//
-// class H5P_cls_close_callback implements H5P_cls_close_func_cb {
-// public int callback(long list_id, H5P_cls_close_func_t cls_data) {
-// cdata cd = ((H5P_cls_close_data)cls_close_data).clsdata.get(0);
-// cd.cls_count++;
-// cd.cls_id = list_id;
-// return 0;
-// }
-// }
-// H5P_cls_close_func_cb cls_close_cb = new H5P_cls_close_callback();
-//
-// long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
-// long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
-// long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
-// long lid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
-// long lid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
-// long nprops = -1; // Number of properties in class
-//
-// try {
-// // Create a new generic class, derived from the root of the class hierarchy
-// try {
-// cid1 = H5.H5Pcreate_class(HDF5Constants.H5P_ROOT, CLASS1_NAME, cls_create_cb, cls_create_data, cls_copy_cb, cls_copy_data, cls_close_cb, cls_close_data);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pcreate_class cid1: " + err);
-// }
-// assertTrue("H5Pcreate_class cid1", cid1 >= 0);
-//
-// // Insert first property into class (with no callbacks)
-// try {
-// byte[] prop_value = HDFNativeData.intToByte(prop1_def);
-//
-// H5.H5Pregister2(cid1, PROP1_NAME, PROP1_SIZE, prop_value, null, null, null, null, null, null, null);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pregister2 cid1: "+PROP1_NAME + err);
-// }
-//
-// // Insert second property into class (with no callbacks)
-// try {
-// byte[] prop_value = HDFNativeData.floatToByte(prop2_def);
-//
-// H5.H5Pregister2(cid1, PROP2_NAME, PROP2_SIZE, prop_value, null, null, null, null, null, null, null);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pregister2 cid1: "+PROP2_NAME + err);
-// }
-//
-// // Insert third property into class (with no callbacks)
-// try {
-// byte[] prop_value = new String(prop3_def).getBytes(StandardCharsets.UTF_8);
-//
-// H5.H5Pregister2(cid1, PROP3_NAME, PROP3_SIZE, prop_value, null, null, null, null, null, null, null);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pregister2 cid1: "+PROP3_NAME + err);
-// }
-//
-// // Check the number of properties in class
-// try {
-// nprops = H5.H5Pget_nprops(cid1);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pget_nprops cid1: " + err);
-// }
-// assertTrue("H5Pget_nprops: "+nprops, nprops==3);
-//
-// // Initialize class callback structs
-// cdata create_id = new cdata(-1, 0);
-// cdata copy_id = new cdata(-1, 0);
-// cdata close_id = new cdata(-1, 0);
-// ((H5P_cls_create_data)cls_create_data).clsdata.add(create_id);
-// ((H5P_cls_copy_data)cls_copy_data).clsdata.add(copy_id);
-// ((H5P_cls_close_data)cls_close_data).clsdata.add(close_id);
-//
-// // Create a property list from the class
-// try {
-// lid1 = H5.H5Pcreate(cid1);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pcreate lid1: " + err);
-// }
-//
-// // Verify that the creation callback occurred
-// assertFalse("H5Pcreate ",((H5P_cls_create_data)cls_create_data).clsdata.isEmpty());
-// assertTrue("H5Pcreate "+((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id ,((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id == lid1);
-// assertTrue("H5Pcreate "+(((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count==1);
-//
-// // Check the number of properties in list
-// try {
-// nprops = H5.H5Pget_nprops(lid1);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pget_nprops lid1: " + err);
-// }
-// assertTrue("H5Pget_nprops: "+nprops, nprops==3);
-//
-// // Create another property list from the class
-// try {
-// lid2 = H5.H5Pcreate(cid1);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pcreate lid2: " + err);
-// }
-//
-// /* Verify that the creation callback occurred */
-// assertFalse("H5Pcreate ",((H5P_cls_create_data)cls_create_data).clsdata.isEmpty());
-// assertTrue("H5Pcreate "+((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id ,((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id == lid2);
-// assertTrue("H5Pcreate "+(((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count==2);
-//
-// // Check the number of properties in list
-// try {
-// nprops = H5.H5Pget_nprops(lid2);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pget_nprops lid2: " + err);
-// }
-// assertTrue("H5Pget_nprops: "+nprops, nprops==3);
-//
-// // Create another property list by copying an existing list
-// try {
-// lid3= H5.H5Pcopy(lid1);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pcopy lid3: " + err);
-// }
-//
-// // Verify that the copy callback occurred
-// assertFalse("H5Pcopy ",((H5P_cls_copy_data)cls_copy_data).clsdata.isEmpty());
-// assertTrue("H5Pcopy "+((H5P_cls_copy_data)cls_copy_data).clsdata.get(0).cls_id ,((H5P_cls_copy_data)cls_copy_data).clsdata.get(0).cls_id == lid3);
-// assertTrue("H5Pcopy "+(((H5P_cls_copy_data)cls_copy_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_copy_data)cls_copy_data).clsdata.get(0)).cls_count==1);
-//
-// // Check the number of properties in list
-// try {
-// nprops = H5.H5Pget_nprops(lid3);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pget_nprops lid3: " + err);
-// }
-// assertTrue("H5Pget_nprops: "+nprops, nprops==3);
-//
-// // Close first list
-// try {
-// H5.H5Pclose(lid1);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pclose lid1: " + err);
-// }
-//
-// /* Verify that the close callback occurred */
-// assertFalse("H5Pclose ",((H5P_cls_close_data)cls_close_data).clsdata.isEmpty());
-// assertTrue("H5Pclose "+((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id ,((H5P_cls_close_data)cls_copy_data).clsdata.get(0).cls_id == lid1);
-// assertTrue("H5Pclose "+(((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_close_data)cls_copy_data).clsdata.get(0)).cls_count==1);
-//
-// // Close second list
-// try {
-// H5.H5Pclose(lid2);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pclose lid2: " + err);
-// }
-//
-// // Verify that the close callback occurred
-// assertTrue("H5Pclose "+((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id ,((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id == lid2);
-// assertTrue("H5Pclose "+(((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count==2);
-//
-// // Close third list
-// try {
-// H5.H5Pclose(lid3);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("H5Pclose lid3: " + err);
-// }
-//
-// // Verify that the close callback occurred
-// assertTrue("H5Pclose "+((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id ,((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id == lid3);
-// assertTrue("H5Pclose "+(((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count==3);
-// }
-// finally {
-// if (lid3 > 0)
-// try {H5.H5Pclose(lid3);} catch (Throwable err) {}
-// if (lid2 > 0)
-// try {H5.H5Pclose(lid2);} catch (Throwable err) {}
-// if (lid1 > 0)
-// try {H5.H5Pclose(lid1);} catch (Throwable err) {}
-// if (cid2 > 0)
-// try {H5.H5Pclose_class(cid2);} catch (Throwable err) {}
-// if (cid1 > 0)
-// try {H5.H5Pclose_class(cid1);} catch (Throwable err) {}
-// }
-// }
-
+ // // Test basic generic property list code. Tests callbacks for property lists in a generic class.
+ // @Test
+ // public void testH5P_genprop_class_callback() {
+ // class cdata {
+ // public long cls_id = HDF5Constants.H5I_INVALID_HID;
+ // public int cls_count = -1;
+ // cdata(long id, int count) {
+ // this.cls_id = id;
+ // this.cls_count = count;
+ // }
+ // }
+ // class H5P_cls_create_data implements H5P_cls_create_func_t {
+ // public ArrayList<cdata> clsdata = new ArrayList<cdata>();
+ // }
+ // H5P_cls_create_func_t cls_create_data = new H5P_cls_create_data();
+ //
+ // class H5P_cls_create_callback implements H5P_cls_create_func_cb {
+ // public int callback(long list_id, H5P_cls_create_func_t cls_data) {
+ // System.err.println("H5P_cls_create_callback enter");
+ // cdata cd = ((H5P_cls_create_data)cls_create_data).clsdata.get(0);
+ // cd.cls_count++;
+ // cd.cls_id = list_id;
+ // return 0;
+ // }
+ // }
+ // H5P_cls_create_func_cb cls_create_cb = new H5P_cls_create_callback();
+ //
+ // class H5P_cls_copy_data implements H5P_cls_copy_func_t {
+ // public ArrayList<cdata> clsdata = new ArrayList<cdata>();
+ // }
+ // H5P_cls_copy_func_t cls_copy_data = new H5P_cls_copy_data();
+ //
+ // class H5P_cls_copy_callback implements H5P_cls_copy_func_cb {
+ // public int callback(long list_id1, long list_id2, H5P_cls_copy_func_t cls_data) {
+ // cdata cd = ((H5P_cls_copy_data)cls_copy_data).clsdata.get(0);
+ // cd.cls_count++;
+ // cd.cls_id = list_id1;
+ // return 0;
+ // }
+ // }
+ // H5P_cls_copy_func_cb cls_copy_cb = new H5P_cls_copy_callback();
+ //
+ // class H5P_cls_close_data implements H5P_cls_close_func_t {
+ // public ArrayList<cdata> clsdata = new ArrayList<cdata>();
+ // }
+ // H5P_cls_close_func_t cls_close_data = new H5P_cls_close_data();
+ //
+ // class H5P_cls_close_callback implements H5P_cls_close_func_cb {
+ // public int callback(long list_id, H5P_cls_close_func_t cls_data) {
+ // cdata cd = ((H5P_cls_close_data)cls_close_data).clsdata.get(0);
+ // cd.cls_count++;
+ // cd.cls_id = list_id;
+ // return 0;
+ // }
+ // }
+ // H5P_cls_close_func_cb cls_close_cb = new H5P_cls_close_callback();
+ //
+ // long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
+ // long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
+ // long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
+ // long lid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
+ // long lid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
+ // long nprops = -1; // Number of properties in class
+ //
+ // try {
+ // // Create a new generic class, derived from the root of the class hierarchy
+ // try {
+ // cid1 = H5.H5Pcreate_class(HDF5Constants.H5P_ROOT, CLASS1_NAME, cls_create_cb,
+ // cls_create_data, cls_copy_cb, cls_copy_data, cls_close_cb, cls_close_data);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pcreate_class cid1: " + err);
+ // }
+ // assertTrue("H5Pcreate_class cid1", cid1 >= 0);
+ //
+ // // Insert first property into class (with no callbacks)
+ // try {
+ // byte[] prop_value = HDFNativeData.intToByte(prop1_def);
+ //
+ // H5.H5Pregister2(cid1, PROP1_NAME, PROP1_SIZE, prop_value, null, null, null, null, null,
+ // null, null);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pregister2 cid1: "+PROP1_NAME + err);
+ // }
+ //
+ // // Insert second property into class (with no callbacks)
+ // try {
+ // byte[] prop_value = HDFNativeData.floatToByte(prop2_def);
+ //
+ // H5.H5Pregister2(cid1, PROP2_NAME, PROP2_SIZE, prop_value, null, null, null, null, null,
+ // null, null);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pregister2 cid1: "+PROP2_NAME + err);
+ // }
+ //
+ // // Insert third property into class (with no callbacks)
+ // try {
+ // byte[] prop_value = new String(prop3_def).getBytes(StandardCharsets.UTF_8);
+ //
+ // H5.H5Pregister2(cid1, PROP3_NAME, PROP3_SIZE, prop_value, null, null, null, null, null,
+ // null, null);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pregister2 cid1: "+PROP3_NAME + err);
+ // }
+ //
+ // // Check the number of properties in class
+ // try {
+ // nprops = H5.H5Pget_nprops(cid1);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pget_nprops cid1: " + err);
+ // }
+ // assertTrue("H5Pget_nprops: "+nprops, nprops==3);
+ //
+ // // Initialize class callback structs
+ // cdata create_id = new cdata(-1, 0);
+ // cdata copy_id = new cdata(-1, 0);
+ // cdata close_id = new cdata(-1, 0);
+ // ((H5P_cls_create_data)cls_create_data).clsdata.add(create_id);
+ // ((H5P_cls_copy_data)cls_copy_data).clsdata.add(copy_id);
+ // ((H5P_cls_close_data)cls_close_data).clsdata.add(close_id);
+ //
+ // // Create a property list from the class
+ // try {
+ // lid1 = H5.H5Pcreate(cid1);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pcreate lid1: " + err);
+ // }
+ //
+ // // Verify that the creation callback occurred
+ // assertFalse("H5Pcreate ",((H5P_cls_create_data)cls_create_data).clsdata.isEmpty());
+ // assertTrue("H5Pcreate "+((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id
+ // ,((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id == lid1);
+ // assertTrue("H5Pcreate
+ // "+(((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count==1);
+ //
+ // // Check the number of properties in list
+ // try {
+ // nprops = H5.H5Pget_nprops(lid1);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pget_nprops lid1: " + err);
+ // }
+ // assertTrue("H5Pget_nprops: "+nprops, nprops==3);
+ //
+ // // Create another property list from the class
+ // try {
+ // lid2 = H5.H5Pcreate(cid1);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pcreate lid2: " + err);
+ // }
+ //
+ // /* Verify that the creation callback occurred */
+ // assertFalse("H5Pcreate ",((H5P_cls_create_data)cls_create_data).clsdata.isEmpty());
+ // assertTrue("H5Pcreate "+((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id
+ // ,((H5P_cls_create_data)cls_create_data).clsdata.get(0).cls_id == lid2);
+ // assertTrue("H5Pcreate
+ // "+(((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_create_data)cls_create_data).clsdata.get(0)).cls_count==2);
+ //
+ // // Check the number of properties in list
+ // try {
+ // nprops = H5.H5Pget_nprops(lid2);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pget_nprops lid2: " + err);
+ // }
+ // assertTrue("H5Pget_nprops: "+nprops, nprops==3);
+ //
+ // // Create another property list by copying an existing list
+ // try {
+ // lid3= H5.H5Pcopy(lid1);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pcopy lid3: " + err);
+ // }
+ //
+ // // Verify that the copy callback occurred
+ // assertFalse("H5Pcopy ",((H5P_cls_copy_data)cls_copy_data).clsdata.isEmpty());
+ // assertTrue("H5Pcopy "+((H5P_cls_copy_data)cls_copy_data).clsdata.get(0).cls_id
+ // ,((H5P_cls_copy_data)cls_copy_data).clsdata.get(0).cls_id == lid3); assertTrue("H5Pcopy
+ // "+(((H5P_cls_copy_data)cls_copy_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_copy_data)cls_copy_data).clsdata.get(0)).cls_count==1);
+ //
+ // // Check the number of properties in list
+ // try {
+ // nprops = H5.H5Pget_nprops(lid3);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pget_nprops lid3: " + err);
+ // }
+ // assertTrue("H5Pget_nprops: "+nprops, nprops==3);
+ //
+ // // Close first list
+ // try {
+ // H5.H5Pclose(lid1);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pclose lid1: " + err);
+ // }
+ //
+ // /* Verify that the close callback occurred */
+ // assertFalse("H5Pclose ",((H5P_cls_close_data)cls_close_data).clsdata.isEmpty());
+ // assertTrue("H5Pclose "+((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id
+ // ,((H5P_cls_close_data)cls_copy_data).clsdata.get(0).cls_id == lid1); assertTrue("H5Pclose
+ // "+(((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_close_data)cls_copy_data).clsdata.get(0)).cls_count==1);
+ //
+ // // Close second list
+ // try {
+ // H5.H5Pclose(lid2);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pclose lid2: " + err);
+ // }
+ //
+ // // Verify that the close callback occurred
+ // assertTrue("H5Pclose "+((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id
+ // ,((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id == lid2); assertTrue("H5Pclose
+ // "+(((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count==2);
+ //
+ // // Close third list
+ // try {
+ // H5.H5Pclose(lid3);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("H5Pclose lid3: " + err);
+ // }
+ //
+ // // Verify that the close callback occurred
+ // assertTrue("H5Pclose "+((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id
+ // ,((H5P_cls_close_data)cls_close_data).clsdata.get(0).cls_id == lid3); assertTrue("H5Pclose
+ // "+(((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count,((cdata)((H5P_cls_close_data)cls_close_data).clsdata.get(0)).cls_count==3);
+ // }
+ // finally {
+ // if (lid3 > 0)
+ // try {H5.H5Pclose(lid3);} catch (Throwable err) {}
+ // if (lid2 > 0)
+ // try {H5.H5Pclose(lid2);} catch (Throwable err) {}
+ // if (lid1 > 0)
+ // try {H5.H5Pclose(lid1);} catch (Throwable err) {}
+ // if (cid2 > 0)
+ // try {H5.H5Pclose_class(cid2);} catch (Throwable err) {}
+ // if (cid1 > 0)
+ // try {H5.H5Pclose_class(cid1);} catch (Throwable err) {}
+ // }
+ // }
}
diff --git a/java/test/TestH5Pvirtual.java b/java/test/TestH5Pvirtual.java
index 0478356..41ae6d1 100644
--- a/java/test/TestH5Pvirtual.java
+++ b/java/test/TestH5Pvirtual.java
@@ -32,48 +32,47 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Pvirtual {
- @Rule public TestName testname = new TestName();
-
- private static final String H5_FILE = "vds.h5";
- private static final String SRC_FILE[] = {
- "v-0.h5",
- "v-1.h5",
- "v-2.h5"
- };
- private static final String SRC_DATASET[] = {
- "A",
- "B",
- "C"
- };
- private static final int DIM_Y = 6;
- private static final int VDSDIM_X = 4;
- private static final int VDSDIM_Y = 6;
- private static final int fill_value = -1;
- long[] H5dims = { DIM_Y };
- long[] VDSH5dims = { VDSDIM_X, VDSDIM_Y };
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5dssid = HDF5Constants.H5I_INVALID_HID;
- long H5dvsid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
- long H5dcplid = HDF5Constants.H5I_INVALID_HID;
- long H5dapl_id = HDF5Constants.H5I_INVALID_HID;
-
- private final void _deleteFile(String filename) {
+ @Rule
+ public TestName testname = new TestName();
+
+ private static final String H5_FILE = "vds.h5";
+ private static final String SRC_FILE[] = {"v-0.h5", "v-1.h5", "v-2.h5"};
+ private static final String SRC_DATASET[] = {"A", "B", "C"};
+ private static final int DIM_Y = 6;
+ private static final int VDSDIM_X = 4;
+ private static final int VDSDIM_Y = 6;
+ private static final int fill_value = -1;
+ long[] H5dims = {DIM_Y};
+ long[] VDSH5dims = {VDSDIM_X, VDSDIM_Y};
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5dssid = HDF5Constants.H5I_INVALID_HID;
+ long H5dvsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+ long H5dcplid = HDF5Constants.H5I_INVALID_HID;
+ long H5dapl_id = HDF5Constants.H5I_INVALID_HID;
+
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
- private final long _createDataset(long fid, long dsid, String name, long dcpl, long dapl) {
- long did = HDF5Constants.H5I_INVALID_HID;
+ private final long _createDataset(long fid, long dsid, String name, long dcpl, long dapl)
+ {
+ long did = HDF5Constants.H5I_INVALID_HID;
long space_id = HDF5Constants.H5I_INVALID_HID;
- long[] start = {0, 0};
+ long[] start = {0, 0};
long[] stride = null;
- long[] count = {1, 1};
- long[] block = {1, VDSDIM_Y};
+ long[] count = {1, 1};
+ long[] block = {1, VDSDIM_Y};
try {
H5dssid = H5.H5Screate_simple(1, H5dims, null);
@@ -83,8 +82,8 @@ public class TestH5Pvirtual {
H5.H5Sselect_hyperslab(dsid, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
H5.H5Pset_virtual(dcpl, dsid, SRC_FILE[i], SRC_DATASET[i], H5dssid);
}
- did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_INT, dsid,
- HDF5Constants.H5P_DEFAULT, dcpl, dapl);
+ did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_INT, dsid, HDF5Constants.H5P_DEFAULT, dcpl,
+ dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -95,23 +94,26 @@ public class TestH5Pvirtual {
return did;
}
- private final void _createH5File(long fcpl, long fapl) {
+ private final void _createH5File(long fcpl, long fapl)
+ {
int[] dset_data = new int[DIM_Y];
// Create source files and datasets
- for (int i=0; i < 3; i++) {
+ for (int i = 0; i < 3; i++) {
long space_id = HDF5Constants.H5I_INVALID_HID;
- long dset_id = HDF5Constants.H5I_INVALID_HID;
- long file_id = HDF5Constants.H5I_INVALID_HID;
- for (int j = 0; j < DIM_Y; j++) dset_data[j] = i+1;
+ long dset_id = HDF5Constants.H5I_INVALID_HID;
+ long file_id = HDF5Constants.H5I_INVALID_HID;
+ for (int j = 0; j < DIM_Y; j++)
+ dset_data[j] = i + 1;
try {
- file_id = H5.H5Fcreate(SRC_FILE[i], HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ file_id = H5.H5Fcreate(SRC_FILE[i], HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
space_id = H5.H5Screate_simple(1, H5dims, null);
- dset_id = H5.H5Dcreate(file_id, SRC_DATASET[i], HDF5Constants.H5T_NATIVE_INT, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- H5.H5Dwrite (dset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT,
- dset_data);
+ dset_id = H5.H5Dcreate(file_id, SRC_DATASET[i], HDF5Constants.H5T_NATIVE_INT, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ H5.H5Dwrite(dset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Throwable err) {
err.printStackTrace();
@@ -119,19 +121,32 @@ public class TestH5Pvirtual {
}
finally {
if (dset_id > 0)
- try {H5.H5Dclose(dset_id);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(dset_id);
+ }
+ catch (Exception ex) {
+ }
if (space_id > 0)
- try {H5.H5Sclose(space_id);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(space_id);
+ }
+ catch (Exception ex) {
+ }
if (file_id > 0)
- try {H5.H5Fclose(file_id);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(file_id);
+ }
+ catch (Exception ex) {
+ }
}
}
try {
int[] fill_value = {-1};
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- H5dsid = H5.H5Screate_simple(2, VDSH5dims, null);
- H5dcplid = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ H5dsid = H5.H5Screate_simple(2, VDSH5dims, null);
+ H5dcplid = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE);
H5.H5Pset_fill_value(H5dcplid, HDF5Constants.H5T_NATIVE_INT, fill_value);
}
catch (Throwable err) {
@@ -151,25 +166,42 @@ public class TestH5Pvirtual {
}
@Before
- public void createH5file()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
_createH5File(HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
assertTrue("TestH5Pvirtual.createH5file: H5.H5Pcreate: ", H5dapl_id > 0);
- }
+ }
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5dapl_id > 0)
- try {H5.H5Pclose(H5dapl_id);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(H5dapl_id);
+ }
+ catch (Exception ex) {
+ }
if (H5dcplid > 0)
- try {H5.H5Pclose(H5dcplid);} catch (Exception ex) {}
+ try {
+ H5.H5Pclose(H5dcplid);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
for (int i = 0; i < 3; i++) {
_deleteFile(SRC_FILE[i]);
}
@@ -178,12 +210,13 @@ public class TestH5Pvirtual {
}
@Test
- public void testH5Pvirtual_storage() {
+ public void testH5Pvirtual_storage()
+ {
int layout = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
try {
- layout = H5.H5Pget_layout (H5dcplid);
+ layout = H5.H5Pget_layout(H5dcplid);
}
catch (Throwable err) {
err.printStackTrace();
@@ -191,15 +224,24 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
- try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dssid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
}
assertTrue("testH5Pvirtual_storage", HDF5Constants.H5D_VIRTUAL == layout);
}
@Test
- public void testH5Pget_virtual_count() {
+ public void testH5Pget_virtual_count()
+ {
long num_map = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
@@ -212,21 +254,30 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
- try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dssid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
}
- assertTrue("testH5Pget_virtual_count: "+num_map, num_map >= 0);
+ assertTrue("testH5Pget_virtual_count: " + num_map, num_map >= 0);
assertEquals(3, num_map);
}
@Test
- public void testH5Pget_source_filename() throws Throwable {
+ public void testH5Pget_source_filename() throws Throwable
+ {
String filename = null;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
try {
- filename = (H5.H5Pget_virtual_filename (H5dcplid, 2));
+ filename = (H5.H5Pget_virtual_filename(H5dcplid, 2));
}
catch (Throwable err) {
err.printStackTrace();
@@ -234,20 +285,29 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
- try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dssid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
}
- assertTrue("testH5Pget_source_filename: "+filename, filename.compareTo("v-2.h5") == 0);
+ assertTrue("testH5Pget_source_filename: " + filename, filename.compareTo("v-2.h5") == 0);
}
@Test
- public void testH5Pget_source_datasetname() throws Throwable {
+ public void testH5Pget_source_datasetname() throws Throwable
+ {
String datasetname = null;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
try {
- datasetname = H5.H5Pget_virtual_dsetname (H5dcplid, 1);
+ datasetname = H5.H5Pget_virtual_dsetname(H5dcplid, 1);
}
catch (Throwable err) {
err.printStackTrace();
@@ -255,21 +315,30 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
- try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dssid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
}
- assertTrue("testH5Pget_source_datasetname: "+datasetname, datasetname.compareTo("B") == 0);
+ assertTrue("testH5Pget_source_datasetname: " + datasetname, datasetname.compareTo("B") == 0);
}
@Test
- public void testH5Pget_selection_source_dataset() throws Throwable {
- long src_space = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Pget_selection_source_dataset() throws Throwable
+ {
+ long src_space = HDF5Constants.H5I_INVALID_HID;
long src_selection = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
try {
- src_space = H5.H5Pget_virtual_srcspace (H5dcplid, 0);
+ src_space = H5.H5Pget_virtual_srcspace(H5dcplid, 0);
src_selection = H5.H5Sget_select_type(src_space);
}
catch (Throwable err) {
@@ -278,17 +347,30 @@ public class TestH5Pvirtual {
}
finally {
if (src_space > 0)
- try {H5.H5Sclose(src_space);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(src_space);
+ }
+ catch (Exception ex) {
+ }
if (H5dssid > 0)
- try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dssid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
}
assertTrue("testH5Pget_selection_source_dataset", src_selection == HDF5Constants.H5S_SEL_ALL);
}
@Test
- public void testH5Pget_mapping_parameters() {
+ public void testH5Pget_mapping_parameters()
+ {
long num_map = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
@@ -302,22 +384,22 @@ public class TestH5Pvirtual {
}
for (int i = 0; i < num_map; i++) {
int vselection = -1;
- long vspace = -1;
- long nblocks; // Number of hyperslab blocks
- long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks
- long[] start = {i, 0};
- long[] stride = {1, 1};
- long[] count = {1, 1};
- long[] block = {1, VDSDIM_Y};
- long q_start[] = new long[2];
- long q_stride[] = new long[2];
- long q_count[] = new long[2];
- long q_block[] = new long[2];
+ long vspace = -1;
+ long nblocks; // Number of hyperslab blocks
+ long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks
+ long[] start = {i, 0};
+ long[] stride = {1, 1};
+ long[] count = {1, 1};
+ long[] block = {1, VDSDIM_Y};
+ long q_start[] = new long[2];
+ long q_stride[] = new long[2];
+ long q_count[] = new long[2];
+ long q_block[] = new long[2];
boolean is_regular = false;
try {
try {
- vspace = H5.H5Pget_virtual_vspace (H5dcplid, i);
+ vspace = H5.H5Pget_virtual_vspace(H5dcplid, i);
}
catch (Throwable err) {
err.printStackTrace();
@@ -330,7 +412,8 @@ public class TestH5Pvirtual {
err.printStackTrace();
fail("H5.H5Sget_select_type: " + err);
}
- assertTrue("testH5Pget_mapping_parameters["+i+"]", vselection == HDF5Constants.H5S_SEL_HYPERSLABS);
+ assertTrue("testH5Pget_mapping_parameters[" + i + "]",
+ vselection == HDF5Constants.H5S_SEL_HYPERSLABS);
// Verify that there is only one block
nblocks = H5.H5Sget_select_hyper_nblocks(vspace);
@@ -340,30 +423,38 @@ public class TestH5Pvirtual {
H5.H5Sget_select_hyper_blocklist(vspace, 0, nblocks, blocks);
// Verify that the correct block is defined
- assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [0]: "+blocks[0], start[0] == blocks[0]);
- assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [1]: "+blocks[1], start[1] == blocks[1]);
- assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [2]: "+blocks[2], (block[0]-1+i) == blocks[2]);
- assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [3]: "+blocks[3], (block[1]-1) == blocks[3]);
+ assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [0]: " + blocks[0],
+ start[0] == blocks[0]);
+ assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [1]: " + blocks[1],
+ start[1] == blocks[1]);
+ assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [2]: " + blocks[2],
+ (block[0] - 1 + i) == blocks[2]);
+ assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [3]: " + blocks[3],
+ (block[1] - 1) == blocks[3]);
// We also can use new APIs to get start, stride, count and block
is_regular = H5.H5Sis_regular_hyperslab(vspace);
assertTrue("H5.H5Sis_regular_hyperslab", is_regular);
- H5.H5Sget_regular_hyperslab (vspace, q_start, q_stride, q_count, q_block);
+ H5.H5Sget_regular_hyperslab(vspace, q_start, q_stride, q_count, q_block);
// Verify the hyperslab parameters
- for(int u = 0; u < 2; u++) {
+ for (int u = 0; u < 2; u++) {
assertTrue("H5Sget_regular_hyperslab, start", start[u] == q_start[u]);
assertTrue("H5Sget_regular_hyperslab, stride", stride[u] == q_stride[u]);
assertTrue("H5Sget_regular_hyperslab, count", count[u] == q_count[u]);
assertTrue("H5Sget_regular_hyperslab, block", block[u] == q_block[u]);
}
- }
+ }
catch (Throwable err) {
err.printStackTrace();
fail("H5.testH5Pget_mapping_parameters: " + err);
}
finally {
if (vspace > 0)
- try {H5.H5Sclose(vspace);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(vspace);
+ }
+ catch (Exception ex) {
+ }
}
}
}
@@ -373,16 +464,25 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
- try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dssid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Pset_get_virtual_view() {
+ public void testH5Pset_get_virtual_view()
+ {
int ret_val = -1;
- H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
+ H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
try {
ret_val = H5.H5Pget_virtual_view(H5dapl_id);
assertTrue("H5Pget_virtual_view", ret_val >= 0);
@@ -398,16 +498,25 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
- try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dssid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Pset_get_virtual_printf_gap() {
+ public void testH5Pset_get_virtual_printf_gap()
+ {
long ret_val = -1;
- H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
+ H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
try {
ret_val = H5.H5Pget_virtual_printf_gap(H5dapl_id);
assertTrue("H5Pget_virtual_printf_gap", ret_val >= 0);
@@ -423,14 +532,23 @@ public class TestH5Pvirtual {
}
finally {
if (H5dssid > 0)
- try {H5.H5Sclose(H5dssid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dssid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Pset_virtual_prefix() {
+ public void testH5Pset_virtual_prefix()
+ {
String prefix = "tmp";
try {
H5.H5Pset_virtual_prefix(H5dapl_id, prefix);
@@ -442,14 +560,16 @@ public class TestH5Pvirtual {
}
@Test(expected = NullPointerException.class)
- public void testH5Pset_virtual_prefix_null() throws Throwable{
+ public void testH5Pset_virtual_prefix_null() throws Throwable
+ {
H5.H5Pset_virtual_prefix(H5dapl_id, null);
}
@Test
- public void testH5Pget_virtual_prefix() {
+ public void testH5Pget_virtual_prefix()
+ {
String prefix = "tmp";
- String pre = "";
+ String pre = "";
try {
H5.H5Pset_virtual_prefix(H5dapl_id, prefix);
diff --git a/java/test/TestH5R.java b/java/test/TestH5R.java
index 031b8e4..4e610bc 100644
--- a/java/test/TestH5R.java
+++ b/java/test/TestH5R.java
@@ -23,8 +23,8 @@ import java.io.File;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
-import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException;
+import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
import org.junit.Before;
@@ -34,38 +34,46 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5R {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_FILE = "testH5R.h5";
- private static final int DIM_X = 4;
- private static final int DIM_Y = 6;
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
- long H5gid = HDF5Constants.H5I_INVALID_HID;
- long H5did2 = HDF5Constants.H5I_INVALID_HID;
- long[] H5dims = { DIM_X, DIM_Y };
- int[][] dset_data = new int[DIM_X][DIM_Y];
- int FILLVAL = 99;
-
- private final void _deleteFile(String filename) {
+ private static final int DIM_X = 4;
+ private static final int DIM_Y = 6;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+ long H5gid = HDF5Constants.H5I_INVALID_HID;
+ long H5did2 = HDF5Constants.H5I_INVALID_HID;
+ long[] H5dims = {DIM_X, DIM_Y};
+ int[][] dset_data = new int[DIM_X][DIM_Y];
+ int FILLVAL = 99;
+
+ private final void _deleteFile(String filename)
+ {
File file = null;
try {
file = new File(filename);
}
- catch (Throwable err) {}
+ catch (Throwable err) {
+ }
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {e.printStackTrace();}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ e.printStackTrace();
+ }
}
assertFalse("TestH5R._deleteFile file still exists ", file.exists());
}
- private final long _createDataset(long fid, long dsid, String name, long dapl) {
+ private final long _createDataset(long fid, long dsid, String name, long dapl)
+ {
long did = HDF5Constants.H5I_INVALID_HID;
try {
- did = H5.H5Dcreate(fid, name,
- HDF5Constants.H5T_STD_I32BE, dsid,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
+ did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -76,34 +84,35 @@ public class TestH5R {
return did;
}
- private final long _createGroup(long fid, String name) {
+ private final long _createGroup(long fid, String name)
+ {
long gid = HDF5Constants.H5I_INVALID_HID;
try {
- gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Gcreate: " + err);
}
- assertTrue("TestH5R._createGroup: ",gid > 0);
+ assertTrue("TestH5R._createGroup: ", gid > 0);
return gid;
}
@Before
- public void createH5file()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
try {
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
- H5gid = _createGroup(H5fid, "Group1");
+ H5gid = _createGroup(H5fid, "Group1");
H5did2 = _createDataset(H5gid, H5dsid, "dset2", HDF5Constants.H5P_DEFAULT);
- H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
+ H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
// Initialize the dataset.
for (int indx = 0; indx < DIM_X; indx++)
@@ -112,38 +121,57 @@ public class TestH5R {
try {
if (H5did >= 0)
- H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, dset_data[0]);
+ H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data[0]);
}
catch (Exception e) {
e.printStackTrace();
}
-
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5R.createH5file: " + err);
}
- assertTrue("TestH5R.createH5file: H5.H5Fcreate: ",H5fid > 0);
- assertTrue("TestH5R.createH5file: H5.H5Screate_simple: ",H5dsid > 0);
- assertTrue("TestH5R.createH5file: _createDataset: ",H5did > 0);
+ assertTrue("TestH5R.createH5file: H5.H5Fcreate: ", H5fid > 0);
+ assertTrue("TestH5R.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
+ assertTrue("TestH5R.createH5file: _createDataset: ", H5did > 0);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5did > 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
if (H5gid > 0)
- try {H5.H5Gclose(H5gid);} catch (Exception ex) {}
+ try {
+ H5.H5Gclose(H5gid);
+ }
+ catch (Exception ex) {
+ }
if (H5did2 > 0)
- try {H5.H5Dclose(H5did2);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did2);
+ }
+ catch (Exception ex) {
+ }
_deleteFile(H5_FILE);
System.out.println();
@@ -152,11 +180,12 @@ public class TestH5R {
// Test v1.12 APIs params
@Test
- public void testH5Rget_object() {
- int ref_type = HDF5Constants.H5R_OBJECT2;
- long ret_val = -1;
- byte[] ref = null;
- String name = "";
+ public void testH5Rget_object()
+ {
+ int ref_type = HDF5Constants.H5R_OBJECT2;
+ long ret_val = -1;
+ byte[] ref = null;
+ String name = "";
String objName = "/dset";
try {
@@ -197,9 +226,10 @@ public class TestH5R {
}
@Test
- public void testH5Rget_obj_type3() {
- int obj_type = -1;
- byte[] ref = null;
+ public void testH5Rget_obj_type3()
+ {
+ int obj_type = -1;
+ byte[] ref = null;
String objName = "/dset";
try {
@@ -222,13 +252,14 @@ public class TestH5R {
}
@Test
- public void testH5Rcreate_regionref_object() {
- byte[] ref = null;
+ public void testH5Rcreate_regionref_object()
+ {
+ byte[] ref = null;
String objName = "/dset";
- long start[] = {2,2}; // Starting location of hyperslab
- long stride[] = {1,1}; // Stride of hyperslab
- long count[] = {1,1}; // Element count of hyperslab
- long block[] = {3,3}; // Block size of hyperslab
+ long start[] = {2, 2}; // Starting location of hyperslab
+ long stride[] = {1, 1}; // Stride of hyperslab
+ long count[] = {1, 1}; // Element count of hyperslab
+ long block[] = {3, 3}; // Block size of hyperslab
// Select 3x3 hyperslab for reference
try {
@@ -249,235 +280,252 @@ public class TestH5R {
H5.H5Rdestroy(ref);
}
-// These tests need to be updated with new APIs
-// @Test//
-// public void testH5Rget_group() {
-// long loc_id = H5fid;
-// int ref_type = HDF5Constants.H5R_OBJECT2;
-// long ret_val = -1;
-// byte[] ref = null;
-// String name = "";
-// String objName = "/dset";
-//
-// try {
-// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("testH5Rget_object: H5Rcreate_object " + err);
-// }
-// try {
-// dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
-//
-// //Create reference on group
-// ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
-// group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
-// assertNotNull(ref1);
-// assertNotNull(ref2);
-// assertTrue(dataset_id >= 0);
-// assertTrue(group_id >= 0);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("TestH5Rdereference " + err);
-// }
-// finally {
-// try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
-// try {H5.H5Gclose(group_id);} catch (Exception ex) {}
-// }
-// }
-
-// @Test//
-// public void testH5Rget_region_dataset() {
-// long loc_id = H5fid;
-// int ref_type = HDF5Constants.H5R_OBJECT2;
-// long ret_val = -1;
-// byte[] ref = null;
-// String name = "";
-// String objName = "/dset";
-//
-// try {
-// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("testH5Rget_object: H5Rcreate_object " + err);
-// }
-// try {
-// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
-// assertNotNull(ref);
-// assertTrue(dsid >= 0);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("TestH5Rget_region: " + err);
-// }
-// finally {
-// try {H5.H5Sclose(dsid);} catch (Exception ex) {}
-// }
-// }
-
-// @Test//
-// public void testH5Rget_attr() {
-// long loc_id = H5fid;
-// int ref_type = HDF5Constants.H5R_OBJECT2;
-// long ret_val = -1;
-// byte[] ref = null;
-// String name = "";
-// String objName = "/dset";
-//
-// try {
-// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("testH5Rget_object: H5Rcreate_object " + err);
-// }
-// try {
-// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
-// assertNotNull(ref);
-// assertTrue(dsid >= 0);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("TestH5Rget_region: " + err);
-// }
-// finally {
-// try {H5.H5Sclose(dsid);} catch (Exception ex) {}
-// }
-// }
+ // These tests need to be updated with new APIs
+ // @Test//
+ // public void testH5Rget_group() {
+ // long loc_id = H5fid;
+ // int ref_type = HDF5Constants.H5R_OBJECT2;
+ // long ret_val = -1;
+ // byte[] ref = null;
+ // String name = "";
+ // String objName = "/dset";
+ //
+ // try {
+ // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("testH5Rget_object: H5Rcreate_object " + err);
+ // }
+ // try {
+ // dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT,
+ // HDF5Constants.H5R_DATASET_REGION, ref1);
+ //
+ // //Create reference on group
+ // ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
+ // group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT,
+ // ref2); assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id >= 0);
+ // assertTrue(group_id >= 0);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("TestH5Rdereference " + err);
+ // }
+ // finally {
+ // try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
+ // try {H5.H5Gclose(group_id);} catch (Exception ex) {}
+ // }
+ // }
+
+ // @Test//
+ // public void testH5Rget_region_dataset() {
+ // long loc_id = H5fid;
+ // int ref_type = HDF5Constants.H5R_OBJECT2;
+ // long ret_val = -1;
+ // byte[] ref = null;
+ // String name = "";
+ // String objName = "/dset";
+ //
+ // try {
+ // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("testH5Rget_object: H5Rcreate_object " + err);
+ // }
+ // try {
+ // dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
+ // assertNotNull(ref);
+ // assertTrue(dsid >= 0);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("TestH5Rget_region: " + err);
+ // }
+ // finally {
+ // try {H5.H5Sclose(dsid);} catch (Exception ex) {}
+ // }
+ // }
+
+ // @Test//
+ // public void testH5Rget_attr() {
+ // long loc_id = H5fid;
+ // int ref_type = HDF5Constants.H5R_OBJECT2;
+ // long ret_val = -1;
+ // byte[] ref = null;
+ // String name = "";
+ // String objName = "/dset";
+ //
+ // try {
+ // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("testH5Rget_object: H5Rcreate_object " + err);
+ // }
+ // try {
+ // dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
+ // assertNotNull(ref);
+ // assertTrue(dsid >= 0);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("TestH5Rget_region: " + err);
+ // }
+ // finally {
+ // try {H5.H5Sclose(dsid);} catch (Exception ex) {}
+ // }
+ // }
// Test parameters to H5Rcreate_object
@Test(expected = NullPointerException.class)
- public void testH5Rcreate_object_Nullname() throws Throwable {
+ public void testH5Rcreate_object_Nullname() throws Throwable
+ {
String name = null;
H5.H5Rcreate_object(H5fid, name, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5FunctionArgumentException.class)
- public void testH5Rget_name_Invalidloc() throws Throwable {
- String name= "";
+ public void testH5Rget_name_Invalidloc() throws Throwable
+ {
+ String name = "";
H5.H5Rcreate_object(-1, name, HDF5Constants.H5P_DEFAULT);
}
// Test parameters to H5Rcreate_region
@Test(expected = NullPointerException.class)
- public void testH5Rcreate_region_Nullname() throws Throwable {
+ public void testH5Rcreate_region_Nullname() throws Throwable
+ {
String name = null;
H5.H5Rcreate_region(H5fid, name, -1, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5FunctionArgumentException.class)
- public void testH5Rcreate_region_Invalidloc() throws Throwable {
- String name= "";
+ public void testH5Rcreate_region_Invalidloc() throws Throwable
+ {
+ String name = "";
H5.H5Rcreate_region(-1, name, -1, HDF5Constants.H5P_DEFAULT);
}
// Test parameters to H5Rcreate_attr
@Test(expected = NullPointerException.class)
- public void testH5Rcreate_attr_Nullname() throws Throwable {
- String name = null;
+ public void testH5Rcreate_attr_Nullname() throws Throwable
+ {
+ String name = null;
String attrname = "";
H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = NullPointerException.class)
- public void testH5Rcreate_attr_Nullattrname() throws Throwable {
- String name = "";
+ public void testH5Rcreate_attr_Nullattrname() throws Throwable
+ {
+ String name = "";
String attrname = null;
H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5FunctionArgumentException.class)
- public void testH5Rcreate_attr_Invalidloc() throws Throwable {
- String name= "";
- String attrname= "";
+ public void testH5Rcreate_attr_Invalidloc() throws Throwable
+ {
+ String name = "";
+ String attrname = "";
H5.H5Rcreate_attr(-1, name, attrname, HDF5Constants.H5P_DEFAULT);
}
// Test parameters to H5Rdestroy
@Test(expected = NullPointerException.class)
- public void testH5Rdestroy_Nullref() throws Throwable {
+ public void testH5Rdestroy_Nullref() throws Throwable
+ {
byte[] ref = null;
H5.H5Rdestroy(ref);
}
// Test parameters to H5Rget_type
@Test(expected = NullPointerException.class)
- public void testH5Rget_type_Nullref() throws Throwable {
+ public void testH5Rget_type_Nullref() throws Throwable
+ {
byte[] ref = null;
H5.H5Rget_type(ref);
}
// Test parameters to H5Requal
@Test(expected = NullPointerException.class)
- public void testH5Requal_Nullref1() throws Throwable {
+ public void testH5Requal_Nullref1() throws Throwable
+ {
byte[] ref1 = null;
- byte[] ref2 = {0,0,0,0};
+ byte[] ref2 = {0, 0, 0, 0};
H5.H5Requal(ref1, ref2);
}
@Test(expected = NullPointerException.class)
- public void testH5Requal_Nullref2() throws Throwable {
- byte[] ref1 = {0,0,0,0};
+ public void testH5Requal_Nullref2() throws Throwable
+ {
+ byte[] ref1 = {0, 0, 0, 0};
byte[] ref2 = null;
H5.H5Requal(ref1, ref2);
}
// Test parameters to H5Rcopy
@Test(expected = NullPointerException.class)
- public void testH5Rcopy_Nullref1() throws Throwable {
+ public void testH5Rcopy_Nullref1() throws Throwable
+ {
byte[] ref1 = null;
byte[] ref2 = H5.H5Rcopy(ref1);
}
// Test parameters to H5Ropen_object
@Test(expected = NullPointerException.class)
- public void testH5Ropen_object_Nullref() throws Throwable {
+ public void testH5Ropen_object_Nullref() throws Throwable
+ {
byte[] ref = null;
H5.H5Ropen_object(ref, -1, -1);
}
// Test parameters to H5Ropen_region
@Test(expected = NullPointerException.class)
- public void testH5Ropen_region_Nullref() throws Throwable {
+ public void testH5Ropen_region_Nullref() throws Throwable
+ {
byte[] ref = null;
H5.H5Ropen_region(ref, -1, -1);
}
// Test parameters to H5Ropen_attr
@Test(expected = NullPointerException.class)
- public void testH5Ropen_attr_Nullref() throws Throwable {
+ public void testH5Ropen_attr_Nullref() throws Throwable
+ {
byte[] ref = null;
H5.H5Ropen_attr(ref, -1, -1);
}
// Test parameters to H5Rget_obj_type3
@Test(expected = NullPointerException.class)
- public void testH5Rget_obj_type3_Nullref() throws Throwable {
+ public void testH5Rget_obj_type3_Nullref() throws Throwable
+ {
byte[] ref = null;
H5.H5Rget_obj_type3(ref, -1);
}
// Test parameters to H5Rget_file_name
@Test(expected = NullPointerException.class)
- public void testH5Rget_file_name_Nullref() throws Throwable {
+ public void testH5Rget_file_name_Nullref() throws Throwable
+ {
byte[] ref = null;
H5.H5Rget_file_name(ref);
}
// Test parameters to H5Rget_obj_name
@Test(expected = NullPointerException.class)
- public void testH5Rget_obj_name_Nullref() throws Throwable {
+ public void testH5Rget_obj_name_Nullref() throws Throwable
+ {
byte[] ref = null;
H5.H5Rget_obj_name(ref, -1);
}
// Test parameters to H5Rget_attr_name
@Test(expected = NullPointerException.class)
- public void testH5Rget_attr_name_Nullref() throws Throwable {
+ public void testH5Rget_attr_name_Nullref() throws Throwable
+ {
byte[] ref = null;
H5.H5Rget_attr_name(ref);
}
-
}
diff --git a/java/test/TestH5Rref.java b/java/test/TestH5Rref.java
index 5733aae..520de74 100644
--- a/java/test/TestH5Rref.java
+++ b/java/test/TestH5Rref.java
@@ -23,8 +23,8 @@ import java.io.File;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
-import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException;
+import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
import org.junit.Before;
@@ -34,14 +34,16 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Rref {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_DREG_FILE = "trefer_reg.h5";
private static final String H5_AREG_FILE = "trefer_attr.h5";
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
- private boolean byteArrayCheck(final byte[] array) {
+ private boolean byteArrayCheck(final byte[] array)
+ {
for (byte b : array) {
if (b != 0) {
return false;
@@ -50,67 +52,81 @@ public class TestH5Rref {
return true;
}
- public void openH5file(String filename, String dsetname) {
- try {
- H5fid = H5.H5Fopen(filename,
- HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5R._openH5file: " + err);
- }
- assertTrue("TestH5R._openH5file: H5.H5Fopen: ", H5fid >= 0);
- try {
- H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5R._openH5file: " + err);
- }
- assertTrue("TestH5R._openH5file: H5.H5Dopen: ", H5did >= 0);
- try {
- H5dsid = H5.H5Dget_space(H5did);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5R._openH5file: " + err);
- }
- assertTrue("TestH5R._openH5file: H5.H5Screate_simple: ",H5dsid > 0);
+ public void openH5file(String filename, String dsetname)
+ {
+ try {
+ H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5R._openH5file: " + err);
+ }
+ assertTrue("TestH5R._openH5file: H5.H5Fopen: ", H5fid >= 0);
+ try {
+ H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5R._openH5file: " + err);
+ }
+ assertTrue("TestH5R._openH5file: H5.H5Dopen: ", H5did >= 0);
+ try {
+ H5dsid = H5.H5Dget_space(H5did);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5R._openH5file: " + err);
+ }
+ assertTrue("TestH5R._openH5file: H5.H5Screate_simple: ", H5dsid > 0);
}
@After
- public void closeH5file() throws HDF5LibraryException {
+ public void closeH5file() throws HDF5LibraryException
+ {
if (H5did >= 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
- H5fid = HDF5Constants.H5I_INVALID_HID;
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
+ H5fid = HDF5Constants.H5I_INVALID_HID;
H5dsid = HDF5Constants.H5I_INVALID_HID;
- H5did = HDF5Constants.H5I_INVALID_HID;
+ H5did = HDF5Constants.H5I_INVALID_HID;
System.out.println();
}
@Before
- public void verifyCount()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
+ public void verifyCount() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
// Test v1.12 APIs params
@Test
- public void testH5Rget_object() {
- int ref_type = HDF5Constants.H5R_OBJECT1;
- long f_type = HDF5Constants.H5I_INVALID_HID;
- int obj_type = -1;
- int ndims = 1;
- long ret_val = -1;
+ public void testH5Rget_object()
+ {
+ int ref_type = HDF5Constants.H5R_OBJECT1;
+ long f_type = HDF5Constants.H5I_INVALID_HID;
+ int obj_type = -1;
+ int ndims = 1;
+ long ret_val = -1;
byte[][] refbuf = null;
- String name = "";
- String objName = "/DS_NA";
+ String name = "";
+ String objName = "/DS_NA";
try {
openH5file(H5_DREG_FILE, objName);
@@ -120,18 +136,22 @@ public class TestH5Rref {
fail("testH5Rget_object: openH5file: " + err);
}
try {
- f_type = H5.H5Dget_type(H5did);
+ f_type = H5.H5Dget_type(H5did);
int result = H5.H5Tget_class(f_type);
assertTrue("testH5Rget_object: H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
- assertTrue("testH5Rget_object: H5Tget_class", class_name.compareTo("H5T_REFERENCE")==0);
+ assertTrue("testH5Rget_object: H5Tget_class", class_name.compareTo("H5T_REFERENCE") == 0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: " + err);
}
finally {
- try {H5.H5Tclose(f_type);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(f_type);
+ }
+ catch (Exception ex) {
+ }
}
try {
ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid);
@@ -143,9 +163,8 @@ public class TestH5Rref {
refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
// Read the reference from the dataset.
try {
- H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, refbuf);
+ H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, refbuf);
}
catch (Exception err) {
err.printStackTrace();
@@ -155,7 +174,7 @@ public class TestH5Rref {
for (int i = 0; i < ndims; i++) {
try {
ret_val = H5.H5Rget_type(refbuf[i]);
- assertTrue("testH5Rget_object: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
+ assertTrue("testH5Rget_object: H5Rget_type[" + i + "]=" + ret_val, ret_val == ref_type);
if (!byteArrayCheck(refbuf[i])) {
try {
obj_type = H5.H5Rget_obj_type3(refbuf[i], HDF5Constants.H5P_DEFAULT);
@@ -178,14 +197,15 @@ public class TestH5Rref {
}
@Test
- public void testH5Rget_obj_type3() {
- long f_type = HDF5Constants.H5I_INVALID_HID;
- int ref_type = HDF5Constants.H5R_DATASET_REGION2;
- int obj_type = -1;
- int ndims = 1;
- long ret_val = -1;
+ public void testH5Rget_obj_type3()
+ {
+ long f_type = HDF5Constants.H5I_INVALID_HID;
+ int ref_type = HDF5Constants.H5R_DATASET_REGION2;
+ int obj_type = -1;
+ int ndims = 1;
+ long ret_val = -1;
byte[][] refbuf = null;
- String objName = "/Dataset1";
+ String objName = "/Dataset1";
try {
openH5file(H5_DREG_FILE, objName);
@@ -195,18 +215,23 @@ public class TestH5Rref {
fail("testH5Rget_obj_type3: openH5file: " + err);
}
try {
- f_type = H5.H5Dget_type(H5did);
+ f_type = H5.H5Dget_type(H5did);
int result = H5.H5Tget_class(f_type);
assertTrue("testH5Rget_obj_type3: H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
- assertTrue("testH5Rget_obj_type3: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0);
+ assertTrue("testH5Rget_obj_type3: H5Tget_class=" + class_name,
+ class_name.compareTo("H5T_REFERENCE") == 0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: " + err);
}
finally {
- try {H5.H5Tclose(f_type);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(f_type);
+ }
+ catch (Exception ex) {
+ }
}
try {
ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid);
@@ -218,9 +243,8 @@ public class TestH5Rref {
refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
// Read the reference from the dataset.
try {
- H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, refbuf);
+ H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, refbuf);
}
catch (Exception err) {
err.printStackTrace();
@@ -230,7 +254,7 @@ public class TestH5Rref {
for (int i = 0; i < ndims; i++) {
try {
ret_val = H5.H5Rget_type(refbuf[i]);
- assertTrue("testH5Rget_obj_type3: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
+ assertTrue("testH5Rget_obj_type3: H5Rget_type[" + i + "]=" + ret_val, ret_val == ref_type);
if (!byteArrayCheck(refbuf[i])) {
try {
obj_type = H5.H5Rget_obj_type3(refbuf[i], HDF5Constants.H5P_DEFAULT);
@@ -252,312 +276,341 @@ public class TestH5Rref {
}
}
- @Test
- public void testH5Rget_region_dataset() {
- long f_type = HDF5Constants.H5I_INVALID_HID;
- long loc_id = HDF5Constants.H5I_INVALID_HID;
- long loc_sid = HDF5Constants.H5I_INVALID_HID;
- int ref_type = HDF5Constants.H5R_DATASET_REGION2;
- int ndims = 1;
- long ret_val = -1;
- byte[][] refbuf = null;
- String name = "";
- String objName = "/Dataset1";
-
- try {
- openH5file(H5_DREG_FILE, objName);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_dataset: openH5file: " + err);
- }
- try {
- f_type = H5.H5Dget_type(H5did);
- int result = H5.H5Tget_class(f_type);
- assertTrue("testH5Rget_region_dataset: H5Tget_class", result > 0);
- String class_name = H5.H5Tget_class_name(result);
- assertTrue("testH5Rget_region_dataset: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_dataset: " + err);
- }
- finally {
- try {H5.H5Tclose(f_type);} catch (Exception ex) {}
- }
- try {
- ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_dataset: H5Sget_simple_extent_ndims: " + err);
- }
- refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
- // Read the reference from the dataset.
- try {
- H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, refbuf);
- }
- catch (Exception err) {
- err.printStackTrace();
- fail("testH5Rget_obj_type3: H5Dread: " + err);
- }
- for (int i = 0; i < ndims; i++) {
- try {
- try {
- ret_val = H5.H5Rget_type(refbuf[i]);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_dataset: H5Rget_type["+i+"]: " + err);
- }
- assertTrue("testH5Rget_region_dataset: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
- try {
- loc_id = H5.H5Ropen_object(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- assertTrue(loc_id >= 0);
- try {
- loc_sid = H5.H5Ropen_region(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- assertTrue(loc_sid >= 0);
- int region_type = -1;
- try {
- int reg_ndims = H5.H5Sget_simple_extent_ndims(loc_sid);
- region_type = H5.H5Sget_select_type(loc_sid);
- if (i == 1)
- assertTrue(region_type == HDF5Constants.H5S_SEL_POINTS);
- else
- assertTrue(region_type == HDF5Constants.H5S_SEL_HYPERSLABS);
- if (region_type == HDF5Constants.H5S_SEL_POINTS) {
- long reg_npoints = H5.H5Sget_select_elem_npoints(loc_sid);
- // Coordinates for get point selection
- long getcoord[] = new long[reg_ndims * (int)reg_npoints];
- // Known coordinates for point selection
- long coord[][] = {{6,9},{2,2},{8,4},{1,6},{2,8},{3,2},
- {0,4},{9,0},{7,1},{3,3}};
- try {
- H5.H5Sget_select_elem_pointlist(loc_sid, 0, reg_npoints, getcoord);
- assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][0] == getcoord[0]);
- assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][1] == getcoord[1]);
- assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][0] == getcoord[2]);
- assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][1] == getcoord[3]);
- assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][0] == getcoord[4]);
- assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][1] == getcoord[5]);
- }
- catch (Throwable err3) {
- err3.printStackTrace();
- fail("H5.H5Sget_select_elem_pointlist: " + err3);
- }
- }
- else if (region_type == HDF5Constants.H5S_SEL_HYPERSLABS) {
- long reg_nblocks = H5.H5Sget_select_hyper_nblocks(loc_sid);
- assertTrue("H5Sget_select_hyper_nblocks", reg_nblocks == 1);
- // Coordinates for get block selection
- long getblocks[] = new long[reg_ndims * (int)reg_nblocks * 2];
- long start[] = {2,2};
- long block[] = {8,8};
- try {
- H5.H5Sget_select_hyper_blocklist(loc_sid, 0, reg_nblocks, getblocks);
- assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == getblocks[0]);
- assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == getblocks[1]);
- assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0]-1) == getblocks[2]);
- assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1]-1) == getblocks[3]);
- }
- catch (Throwable err3) {
- err3.printStackTrace();
- fail("H5.H5Sget_select_hyper_blocklist: " + err3);
- }
- }
- }
- catch (Throwable err2) {
- err2.printStackTrace();
- assertTrue("testH5Rget_region_dataset: H5Sget_select_type: " + err2, i > 1);
- }
- }
- catch (Throwable err1) {
- err1.printStackTrace();
- fail("testH5Rget_region_dataset: " + err1);
- }
- finally {
- try {H5.H5Sclose(loc_sid);} catch (Exception ex) {}
- }
- }
- catch (Throwable err0) {
- err0.printStackTrace();
- fail("testH5Rget_region_dataset: " + err0);
- }
- finally {
- try {H5.H5Dclose(loc_id);} catch (Exception ex) {}
- }
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_dataset: H5Rget_type: " + err);
- }
- finally {
- H5.H5Rdestroy(refbuf[i]);
- }
- } //for (int i = 0; i < ndims; i++)
- }
-
- @Test
- public void testH5Rget_region_attribute() {
- long f_type = HDF5Constants.H5I_INVALID_HID;
- long loc_id = HDF5Constants.H5I_INVALID_HID;
- long loc_sid = HDF5Constants.H5I_INVALID_HID;
- int ref_type = HDF5Constants.H5R_ATTR;
- int obj_type = -1;
- int ndims = 1;
- long ret_val = -1;
- byte[][] refbuf = null;
- String objName = "/Dataset3";
+ @Test
+ public void testH5Rget_region_dataset()
+ {
+ long f_type = HDF5Constants.H5I_INVALID_HID;
+ long loc_id = HDF5Constants.H5I_INVALID_HID;
+ long loc_sid = HDF5Constants.H5I_INVALID_HID;
+ int ref_type = HDF5Constants.H5R_DATASET_REGION2;
+ int ndims = 1;
+ long ret_val = -1;
+ byte[][] refbuf = null;
+ String name = "";
+ String objName = "/Dataset1";
- try {
- openH5file(H5_AREG_FILE, objName);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_attribute: openH5file: " + err);
- }
- try {
- f_type = H5.H5Dget_type(H5did);
- int result = H5.H5Tget_class(f_type);
- assertTrue("testH5Rget_region_attribute: H5Tget_class", result > 0);
- String class_name = H5.H5Tget_class_name(result);
- assertTrue("testH5Rget_region_attribute: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_attribute: " + err);
- }
- finally {
- try {H5.H5Tclose(f_type);} catch (Exception ex) {}
- }
- try {
- ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_attribute: H5Sget_simple_extent_ndims: " + err);
- }
- refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
- // Read the reference from the dataset.
- try {
- H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, refbuf);
- }
- catch (Exception err) {
- err.printStackTrace();
- fail("testH5Rget_region_attribute: H5Dread: " + err);
- }
+ try {
+ openH5file(H5_DREG_FILE, objName);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_dataset: openH5file: " + err);
+ }
+ try {
+ f_type = H5.H5Dget_type(H5did);
+ int result = H5.H5Tget_class(f_type);
+ assertTrue("testH5Rget_region_dataset: H5Tget_class", result > 0);
+ String class_name = H5.H5Tget_class_name(result);
+ assertTrue("testH5Rget_region_dataset: H5Tget_class=" + class_name,
+ class_name.compareTo("H5T_REFERENCE") == 0);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_dataset: " + err);
+ }
+ finally {
+ try {
+ H5.H5Tclose(f_type);
+ }
+ catch (Exception ex) {
+ }
+ }
+ try {
+ ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_dataset: H5Sget_simple_extent_ndims: " + err);
+ }
+ refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
+ // Read the reference from the dataset.
+ try {
+ H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, refbuf);
+ }
+ catch (Exception err) {
+ err.printStackTrace();
+ fail("testH5Rget_obj_type3: H5Dread: " + err);
+ }
+ for (int i = 0; i < ndims; i++) {
+ try {
+ try {
+ ret_val = H5.H5Rget_type(refbuf[i]);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_dataset: H5Rget_type[" + i + "]: " + err);
+ }
+ assertTrue("testH5Rget_region_dataset: H5Rget_type[" + i + "]=" + ret_val,
+ ret_val == ref_type);
+ try {
+ loc_id =
+ H5.H5Ropen_object(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ assertTrue(loc_id >= 0);
+ try {
+ loc_sid = H5.H5Ropen_region(refbuf[i], HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ assertTrue(loc_sid >= 0);
+ int region_type = -1;
+ try {
+ int reg_ndims = H5.H5Sget_simple_extent_ndims(loc_sid);
+ region_type = H5.H5Sget_select_type(loc_sid);
+ if (i == 1)
+ assertTrue(region_type == HDF5Constants.H5S_SEL_POINTS);
+ else
+ assertTrue(region_type == HDF5Constants.H5S_SEL_HYPERSLABS);
+ if (region_type == HDF5Constants.H5S_SEL_POINTS) {
+ long reg_npoints = H5.H5Sget_select_elem_npoints(loc_sid);
+ // Coordinates for get point selection
+ long getcoord[] = new long[reg_ndims * (int)reg_npoints];
+ // Known coordinates for point selection
+ long coord[][] = {{6, 9}, {2, 2}, {8, 4}, {1, 6}, {2, 8},
+ {3, 2}, {0, 4}, {9, 0}, {7, 1}, {3, 3}};
+ try {
+ H5.H5Sget_select_elem_pointlist(loc_sid, 0, reg_npoints, getcoord);
+ assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][0] == getcoord[0]);
+ assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][1] == getcoord[1]);
+ assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][0] == getcoord[2]);
+ assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][1] == getcoord[3]);
+ assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][0] == getcoord[4]);
+ assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][1] == getcoord[5]);
+ }
+ catch (Throwable err3) {
+ err3.printStackTrace();
+ fail("H5.H5Sget_select_elem_pointlist: " + err3);
+ }
+ }
+ else if (region_type == HDF5Constants.H5S_SEL_HYPERSLABS) {
+ long reg_nblocks = H5.H5Sget_select_hyper_nblocks(loc_sid);
+ assertTrue("H5Sget_select_hyper_nblocks", reg_nblocks == 1);
+ // Coordinates for get block selection
+ long getblocks[] = new long[reg_ndims * (int)reg_nblocks * 2];
+ long start[] = {2, 2};
+ long block[] = {8, 8};
+ try {
+ H5.H5Sget_select_hyper_blocklist(loc_sid, 0, reg_nblocks, getblocks);
+ assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == getblocks[0]);
+ assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == getblocks[1]);
+ assertTrue("H5.H5Sget_select_hyper_blocklist",
+ (block[0] - 1) == getblocks[2]);
+ assertTrue("H5.H5Sget_select_hyper_blocklist",
+ (block[1] - 1) == getblocks[3]);
+ }
+ catch (Throwable err3) {
+ err3.printStackTrace();
+ fail("H5.H5Sget_select_hyper_blocklist: " + err3);
+ }
+ }
+ }
+ catch (Throwable err2) {
+ err2.printStackTrace();
+ assertTrue("testH5Rget_region_dataset: H5Sget_select_type: " + err2, i > 1);
+ }
+ }
+ catch (Throwable err1) {
+ err1.printStackTrace();
+ fail("testH5Rget_region_dataset: " + err1);
+ }
+ finally {
+ try {
+ H5.H5Sclose(loc_sid);
+ }
+ catch (Exception ex) {
+ }
+ }
+ }
+ catch (Throwable err0) {
+ err0.printStackTrace();
+ fail("testH5Rget_region_dataset: " + err0);
+ }
+ finally {
+ try {
+ H5.H5Dclose(loc_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_dataset: H5Rget_type: " + err);
+ }
+ finally {
+ H5.H5Rdestroy(refbuf[i]);
+ }
+ } // for (int i = 0; i < ndims; i++)
+ }
- for (int i = 0; i < ndims; i++) {
- try {
- ret_val = H5.H5Rget_type(refbuf[i]);
- assertTrue("testH5Rget_region_attribute: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
- try {
- loc_id = H5.H5Ropen_attr(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- assertTrue(loc_id >= 0);
- if (!byteArrayCheck(refbuf[i])) {
- try {
- loc_sid = H5.H5Aget_space(loc_id);
- assertTrue(loc_sid >= 0);
- }
- catch (Throwable err1) {
- err1.printStackTrace();
- fail("testH5Rget_region_attribute: " + err1);
- }
- finally {
- try {H5.H5Sclose(loc_sid);} catch (Exception ex) {}
- }
- }
- }
- catch (Throwable err0) {
- err0.printStackTrace();
- // second attribute is null
- assertTrue("testH5Rget_region_attribute: " + err0, i == 1);
- }
- finally {
- try {H5.H5Aclose(loc_id);} catch (Exception ex) {}
- }
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_attribute: H5Rget_type: " + err);
- }
- finally {
- H5.H5Rdestroy(refbuf[i]);
- }
- }
- }
+ @Test
+ public void testH5Rget_region_attribute()
+ {
+ long f_type = HDF5Constants.H5I_INVALID_HID;
+ long loc_id = HDF5Constants.H5I_INVALID_HID;
+ long loc_sid = HDF5Constants.H5I_INVALID_HID;
+ int ref_type = HDF5Constants.H5R_ATTR;
+ int obj_type = -1;
+ int ndims = 1;
+ long ret_val = -1;
+ byte[][] refbuf = null;
+ String objName = "/Dataset3";
+ try {
+ openH5file(H5_AREG_FILE, objName);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_attribute: openH5file: " + err);
+ }
+ try {
+ f_type = H5.H5Dget_type(H5did);
+ int result = H5.H5Tget_class(f_type);
+ assertTrue("testH5Rget_region_attribute: H5Tget_class", result > 0);
+ String class_name = H5.H5Tget_class_name(result);
+ assertTrue("testH5Rget_region_attribute: H5Tget_class=" + class_name,
+ class_name.compareTo("H5T_REFERENCE") == 0);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_attribute: " + err);
+ }
+ finally {
+ try {
+ H5.H5Tclose(f_type);
+ }
+ catch (Exception ex) {
+ }
+ }
+ try {
+ ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_attribute: H5Sget_simple_extent_ndims: " + err);
+ }
+ refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
+ // Read the reference from the dataset.
+ try {
+ H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, refbuf);
+ }
+ catch (Exception err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_attribute: H5Dread: " + err);
+ }
-// These tests need to be updated with new APIs
-// @Test//
-// public void testH5Rget_group() {
-// long loc_id = H5fid;
-// int ref_type = HDF5Constants.H5R_OBJECT2;
-// long ret_val = -1;
-// byte[] ref = null;
-// String name = "";
-// String objName = "/dset";
-//
-// try {
-// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("testH5Rget_object: H5Rcreate_object " + err);
-// }
-// try {
-// dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
-//
-// //Create reference on group
-// ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
-// group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
-// assertNotNull(ref1);
-// assertNotNull(ref2);
-// assertTrue(dataset_id >= 0);
-// assertTrue(group_id >= 0);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("TestH5Rdereference " + err);
-// }
-// finally {
-// try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
-// try {H5.H5Gclose(group_id);} catch (Exception ex) {}
-// }
-// }
+ for (int i = 0; i < ndims; i++) {
+ try {
+ ret_val = H5.H5Rget_type(refbuf[i]);
+ assertTrue("testH5Rget_region_attribute: H5Rget_type[" + i + "]=" + ret_val,
+ ret_val == ref_type);
+ try {
+ loc_id = H5.H5Ropen_attr(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ assertTrue(loc_id >= 0);
+ if (!byteArrayCheck(refbuf[i])) {
+ try {
+ loc_sid = H5.H5Aget_space(loc_id);
+ assertTrue(loc_sid >= 0);
+ }
+ catch (Throwable err1) {
+ err1.printStackTrace();
+ fail("testH5Rget_region_attribute: " + err1);
+ }
+ finally {
+ try {
+ H5.H5Sclose(loc_sid);
+ }
+ catch (Exception ex) {
+ }
+ }
+ }
+ }
+ catch (Throwable err0) {
+ err0.printStackTrace();
+ // second attribute is null
+ assertTrue("testH5Rget_region_attribute: " + err0, i == 1);
+ }
+ finally {
+ try {
+ H5.H5Aclose(loc_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_attribute: H5Rget_type: " + err);
+ }
+ finally {
+ H5.H5Rdestroy(refbuf[i]);
+ }
+ }
+ }
-// @Test//
-// public void testH5Rget_attr() {
-// long loc_id = H5fid;
-// int ref_type = HDF5Constants.H5R_OBJECT2;
-// long ret_val = -1;
-// byte[] ref = null;
-// String name = "";
-// String objName = "/dset";
-//
-// try {
-// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("testH5Rget_object: H5Rcreate_object " + err);
-// }
-// try {
-// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
-// assertNotNull(ref);
-// assertTrue(dsid >= 0);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("TestH5Rget_region: " + err);
-// }
-// finally {
-// try {H5.H5Sclose(dsid);} catch (Exception ex) {}
-// }
-// }
+ // These tests need to be updated with new APIs
+ // @Test//
+ // public void testH5Rget_group() {
+ // long loc_id = H5fid;
+ // int ref_type = HDF5Constants.H5R_OBJECT2;
+ // long ret_val = -1;
+ // byte[] ref = null;
+ // String name = "";
+ // String objName = "/dset";
+ //
+ // try {
+ // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("testH5Rget_object: H5Rcreate_object " + err);
+ // }
+ // try {
+ // dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT,
+ // HDF5Constants.H5R_DATASET_REGION, ref1);
+ //
+ // //Create reference on group
+ // ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
+ // group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT,
+ // ref2); assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id >= 0);
+ // assertTrue(group_id >= 0);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("TestH5Rdereference " + err);
+ // }
+ // finally {
+ // try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
+ // try {H5.H5Gclose(group_id);} catch (Exception ex) {}
+ // }
+ // }
+ // @Test//
+ // public void testH5Rget_attr() {
+ // long loc_id = H5fid;
+ // int ref_type = HDF5Constants.H5R_OBJECT2;
+ // long ret_val = -1;
+ // byte[] ref = null;
+ // String name = "";
+ // String objName = "/dset";
+ //
+ // try {
+ // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("testH5Rget_object: H5Rcreate_object " + err);
+ // }
+ // try {
+ // dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
+ // assertNotNull(ref);
+ // assertTrue(dsid >= 0);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("TestH5Rget_region: " + err);
+ // }
+ // finally {
+ // try {H5.H5Sclose(dsid);} catch (Exception ex) {}
+ // }
+ // }
}
diff --git a/java/test/TestH5S.java b/java/test/TestH5S.java
index 7eeed7a..6e081a6 100644
--- a/java/test/TestH5S.java
+++ b/java/test/TestH5S.java
@@ -12,10 +12,10 @@
package test;
-
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
@@ -28,16 +28,17 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5S {
- @Rule public TestName testname = new TestName();
- long H5sid = HDF5Constants.H5I_INVALID_HID;
- int H5rank = 2;
- long H5dims[] = {5, 5};
- long H5maxdims[] = {10, 10};
+ @Rule
+ public TestName testname = new TestName();
+ long H5sid = HDF5Constants.H5I_INVALID_HID;
+ int H5rank = 2;
+ long H5dims[] = {5, 5};
+ long H5maxdims[] = {10, 10};
@Before
- public void createH5file()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
H5sid = H5.H5Screate_simple(H5rank, H5dims, H5maxdims);
@@ -45,15 +46,21 @@ public class TestH5S {
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5sid > 0) {
- try {H5.H5Sclose(H5sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5sid);
+ }
+ catch (Exception ex) {
+ }
}
System.out.println();
}
@Test
- public void testH5Sget_simple_extent_ndims() {
+ public void testH5Sget_simple_extent_ndims()
+ {
int read_rank = -1;
try {
read_rank = H5.H5Sget_simple_extent_ndims(H5sid);
@@ -66,7 +73,8 @@ public class TestH5S {
}
@Test
- public void testH5Sget_simple_extent_dims_null() {
+ public void testH5Sget_simple_extent_dims_null()
+ {
int read_rank = -1;
try {
@@ -80,9 +88,10 @@ public class TestH5S {
}
@Test
- public void testH5Sget_simple_extent_dims() {
- int read_rank = -1;
- long dims[] = {5, 5};
+ public void testH5Sget_simple_extent_dims()
+ {
+ int read_rank = -1;
+ long dims[] = {5, 5};
long maxdims[] = {10, 10};
try {
@@ -98,11 +107,12 @@ public class TestH5S {
}
@Test
- public void testH5Sget_simple_extent_npoints() {
+ public void testH5Sget_simple_extent_npoints()
+ {
long num_elements = -1;
try {
num_elements = H5.H5Sget_simple_extent_npoints(H5sid);
- assertTrue("H5.H5Sget_simple_extent_npoints", (H5dims[0]*H5dims[1]) == num_elements);
+ assertTrue("H5.H5Sget_simple_extent_npoints", (H5dims[0] * H5dims[1]) == num_elements);
}
catch (Throwable err) {
err.printStackTrace();
@@ -111,7 +121,8 @@ public class TestH5S {
}
@Test
- public void testH5Sget_simple_extent_type() {
+ public void testH5Sget_simple_extent_type()
+ {
int read_type = -1;
try {
read_type = H5.H5Sget_simple_extent_type(H5sid);
@@ -124,7 +135,8 @@ public class TestH5S {
}
@Test
- public void testH5Sis_simple() {
+ public void testH5Sis_simple()
+ {
boolean result = false;
try {
@@ -138,12 +150,13 @@ public class TestH5S {
}
@Test
- public void testH5Sset_extent_simple() {
+ public void testH5Sset_extent_simple()
+ {
long num_elements = -1;
try {
H5.H5Sset_extent_simple(H5sid, H5rank, H5maxdims, H5maxdims);
num_elements = H5.H5Sget_simple_extent_npoints(H5sid);
- assertTrue("H5.H5Sget_simple_extent_npoints", (H5maxdims[0]*H5maxdims[1]) == num_elements);
+ assertTrue("H5.H5Sget_simple_extent_npoints", (H5maxdims[0] * H5maxdims[1]) == num_elements);
}
catch (Throwable err) {
err.printStackTrace();
@@ -152,7 +165,8 @@ public class TestH5S {
}
@Test
- public void testH5Sget_select_type() {
+ public void testH5Sget_select_type()
+ {
int read_type = -1;
try {
read_type = H5.H5Sget_select_type(H5sid);
@@ -165,12 +179,13 @@ public class TestH5S {
}
@Test
- public void testH5Sset_extent_none() {
+ public void testH5Sset_extent_none()
+ {
int read_type = -1;
try {
H5.H5Sset_extent_none(H5sid);
read_type = H5.H5Sget_simple_extent_type(H5sid);
- assertTrue("H5.H5Sget_simple_extent_type: "+read_type, HDF5Constants.H5S_NULL == read_type);
+ assertTrue("H5.H5Sget_simple_extent_type: " + read_type, HDF5Constants.H5S_NULL == read_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -179,8 +194,9 @@ public class TestH5S {
}
@Test
- public void testH5Scopy() {
- long sid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Scopy()
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
int read_rank = -1;
try {
@@ -194,13 +210,18 @@ public class TestH5S {
fail("H5.H5Scopy: " + err);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Sextent_copy() {
- long sid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Sextent_copy()
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
try {
@@ -215,18 +236,23 @@ public class TestH5S {
fail("H5.H5Sextent_copy: " + err);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Sextent_equal() {
- long sid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Sextent_equal()
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
boolean result = false;
try {
sid = H5.H5Screate(HDF5Constants.H5S_NULL);
- assertTrue("H5.H5Screate_null",sid > 0);
+ assertTrue("H5.H5Screate_null", sid > 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -235,7 +261,7 @@ public class TestH5S {
try {
result = H5.H5Sextent_equal(sid, H5sid);
- assertFalse("H5.testH5Sextent_equal",result);
+ assertFalse("H5.testH5Sextent_equal", result);
H5.H5Sextent_copy(sid, H5sid);
result = H5.H5Sextent_equal(sid, H5sid);
assertTrue("H5.testH5Sextent_equal", result);
@@ -245,16 +271,21 @@ public class TestH5S {
fail("H5.H5Sextent_copy " + err);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Sencode_decode_null_dataspace() {
- long sid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Sencode_decode_null_dataspace()
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
long decoded_sid = HDF5Constants.H5I_INVALID_HID;
byte[] null_sbuf = null;
- boolean result = false;
+ boolean result = false;
try {
sid = H5.H5Screate(HDF5Constants.H5S_NULL);
@@ -267,21 +298,25 @@ public class TestH5S {
try {
null_sbuf = H5.H5Sencode(sid);
- assertFalse("H5.testH5Sencode", null_sbuf==null);
+ assertFalse("H5.testH5Sencode", null_sbuf == null);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Sencode " + err);
}
finally {
- if(null_sbuf == null) {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ if (null_sbuf == null) {
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
try {
decoded_sid = H5.H5Sdecode(null_sbuf);
- assertTrue("H5.testH5Sdecode", decoded_sid>0);
+ assertTrue("H5.testH5Sdecode", decoded_sid > 0);
result = H5.H5Sextent_equal(sid, decoded_sid);
assertTrue("H5.testH5Sextent_equal", result);
@@ -291,19 +326,28 @@ public class TestH5S {
fail("H5.H5Sdecode " + err);
}
finally {
- try {H5.H5Sclose(decoded_sid);} catch (Exception ex) {}
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(decoded_sid);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Sencode_decode_scalar_dataspace() {
- long sid = HDF5Constants.H5I_INVALID_HID;
- long decoded_sid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Sencode_decode_scalar_dataspace()
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
+ long decoded_sid = HDF5Constants.H5I_INVALID_HID;
byte[] scalar_sbuf = null;
- boolean result = false;
- int iresult = -1;
- long lresult = -1;
+ boolean result = false;
+ int iresult = -1;
+ long lresult = -1;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SCALAR);
@@ -316,52 +360,65 @@ public class TestH5S {
try {
scalar_sbuf = H5.H5Sencode(sid);
- assertFalse("H5.testH5Sencode", scalar_sbuf==null);
+ assertFalse("H5.testH5Sencode", scalar_sbuf == null);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Sencode " + err);
}
finally {
- if(scalar_sbuf == null) {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ if (scalar_sbuf == null) {
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
try {
decoded_sid = H5.H5Sdecode(scalar_sbuf);
- assertTrue("H5.testH5Sdecode", decoded_sid>0);
+ assertTrue("H5.testH5Sdecode", decoded_sid > 0);
result = H5.H5Sextent_equal(sid, decoded_sid);
assertTrue("H5.testH5Sextent_equal", result);
/* Verify decoded dataspace */
lresult = H5.H5Sget_simple_extent_npoints(decoded_sid);
- assertTrue("H5.testH5Sget_simple_extent_npoints", lresult==1);
+ assertTrue("H5.testH5Sget_simple_extent_npoints", lresult == 1);
iresult = H5.H5Sget_simple_extent_ndims(decoded_sid);
- assertTrue("H5.testH5Sget_simple_extent_ndims", iresult==0);
+ assertTrue("H5.testH5Sget_simple_extent_ndims", iresult == 0);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Sdecode " + err);
}
finally {
- try {H5.H5Sclose(decoded_sid);} catch (Exception ex) {}
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(decoded_sid);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Sselect_none() {
+ public void testH5Sselect_none()
+ {
int read_type = -1;
try {
H5.H5Sselect_none(H5sid);
read_type = H5.H5Sget_select_type(H5sid);
- assertTrue("H5.H5Sget_select_type: "+read_type, HDF5Constants.H5S_SEL_NONE == read_type);
+ assertTrue("H5.H5Sget_select_type: " + read_type, HDF5Constants.H5S_SEL_NONE == read_type);
H5.H5Sselect_all(H5sid);
read_type = H5.H5Sget_select_type(H5sid);
- assertTrue("H5.H5Sget_select_type: "+read_type, HDF5Constants.H5S_SEL_ALL == read_type);
+ assertTrue("H5.H5Sget_select_type: " + read_type, HDF5Constants.H5S_SEL_ALL == read_type);
}
catch (Throwable err) {
err.printStackTrace();
@@ -370,13 +427,14 @@ public class TestH5S {
}
@Test
- public void testH5Sget_select_npoints() {
- long coord[][] = {{0,1},{2,4},{5,6}}; /* Coordinates for point selection */
+ public void testH5Sget_select_npoints()
+ {
+ long coord[][] = {{0, 1}, {2, 4}, {5, 6}}; /* Coordinates for point selection */
long num_elements = -1;
try {
H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 3, coord);
num_elements = H5.H5Sget_select_npoints(H5sid);
- assertTrue("H5.H5Sget_select_npoints: "+num_elements, 3 == num_elements);
+ assertTrue("H5.H5Sget_select_npoints: " + num_elements, 3 == num_elements);
}
catch (Throwable err) {
err.printStackTrace();
@@ -385,9 +443,10 @@ public class TestH5S {
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Sget_select_elem_pointlist_invalid() throws Throwable {
- long coord[][] = {{0,1},{2,4},{5,6}}; /* Coordinates for point selection */
- long getcoord[] = {-1,-1}; /* Coordinates for get point selection */
+ public void testH5Sget_select_elem_pointlist_invalid() throws Throwable
+ {
+ long coord[][] = {{0, 1}, {2, 4}, {5, 6}}; /* Coordinates for point selection */
+ long getcoord[] = {-1, -1}; /* Coordinates for get point selection */
try {
H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 3, coord);
}
@@ -399,9 +458,10 @@ public class TestH5S {
}
@Test
- public void testH5Sget_select_elem_pointlist() {
- long coord[][] = {{0,1},{2,3},{4,5}}; /* Coordinates for point selection */
- long getcoord[] = {-1,-1,-1,-1,-1,-1}; /* Coordinates for get point selection */
+ public void testH5Sget_select_elem_pointlist()
+ {
+ long coord[][] = {{0, 1}, {2, 3}, {4, 5}}; /* Coordinates for point selection */
+ long getcoord[] = {-1, -1, -1, -1, -1, -1}; /* Coordinates for get point selection */
try {
H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 3, coord);
H5.H5Sget_select_elem_pointlist(H5sid, 0, 3, getcoord);
@@ -419,15 +479,16 @@ public class TestH5S {
}
@Test
- public void testH5Sget_select_bounds() {
- long lowbounds[] = {-1,-1};
- long hibounds[] = {-1,-1};
+ public void testH5Sget_select_bounds()
+ {
+ long lowbounds[] = {-1, -1};
+ long hibounds[] = {-1, -1};
try {
H5.H5Sget_select_bounds(H5sid, lowbounds, hibounds);
assertTrue("H5.H5Sget_select_bounds", 0 == lowbounds[0]);
assertTrue("H5.H5Sget_select_bounds", 0 == lowbounds[1]);
- assertTrue("H5.H5Sget_select_bounds", (H5dims[0]-1) == hibounds[0]);
- assertTrue("H5.H5Sget_select_bounds", (H5dims[1]-1) == hibounds[1]);
+ assertTrue("H5.H5Sget_select_bounds", (H5dims[0] - 1) == hibounds[0]);
+ assertTrue("H5.H5Sget_select_bounds", (H5dims[1] - 1) == hibounds[1]);
}
catch (Throwable err) {
err.printStackTrace();
@@ -436,30 +497,31 @@ public class TestH5S {
}
@Test
- public void testH5Soffset_simple() {
- long coord[][] = {{2,2},{2,4},{4,2},{4,4}}; /* Coordinates for point selection */
- long lowbounds[] = {-1,-1};
- long hibounds[] = {-1,-1};
+ public void testH5Soffset_simple()
+ {
+ long coord[][] = {{2, 2}, {2, 4}, {4, 2}, {4, 4}}; /* Coordinates for point selection */
+ long lowbounds[] = {-1, -1};
+ long hibounds[] = {-1, -1};
try {
H5.H5Sselect_elements(H5sid, HDF5Constants.H5S_SELECT_SET, 4, coord);
H5.H5Sget_select_bounds(H5sid, lowbounds, hibounds);
assertTrue("H5.H5Sget_select_bounds", 2 == lowbounds[0]);
assertTrue("H5.H5Sget_select_bounds", 2 == lowbounds[1]);
- assertTrue("H5.H5Sget_select_bounds", (H5dims[0]-1) == hibounds[0]);
- assertTrue("H5.H5Sget_select_bounds", (H5dims[1]-1) == hibounds[1]);
+ assertTrue("H5.H5Sget_select_bounds", (H5dims[0] - 1) == hibounds[0]);
+ assertTrue("H5.H5Sget_select_bounds", (H5dims[1] - 1) == hibounds[1]);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Sget_select_bounds: " + err);
}
try {
- long offset[] = {-1,-1};
+ long offset[] = {-1, -1};
H5.H5Soffset_simple(H5sid, offset);
H5.H5Sget_select_bounds(H5sid, lowbounds, hibounds);
assertTrue("H5.H5Sget_select_bounds", 1 == lowbounds[0]);
assertTrue("H5.H5Sget_select_bounds", 1 == lowbounds[1]);
- assertTrue("H5.H5Sget_select_bounds", (H5dims[0]-2) == hibounds[0]);
- assertTrue("H5.H5Sget_select_bounds", (H5dims[1]-2) == hibounds[1]);
+ assertTrue("H5.H5Sget_select_bounds", (H5dims[0] - 2) == hibounds[0]);
+ assertTrue("H5.H5Sget_select_bounds", (H5dims[1] - 2) == hibounds[1]);
}
catch (Throwable err) {
err.printStackTrace();
@@ -468,14 +530,15 @@ public class TestH5S {
}
@Test
- public void testH5Sget_select_hyper() {
- long space1 = HDF5Constants.H5I_INVALID_HID;
- long start[] = {0,0};
- long stride[] = {1,1};
- long count[] = {1,1};
- long block[] = {4,4};
- long nblocks; // Number of hyperslab blocks
- long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks
+ public void testH5Sget_select_hyper()
+ {
+ long space1 = HDF5Constants.H5I_INVALID_HID;
+ long start[] = {0, 0};
+ long stride[] = {1, 1};
+ long count[] = {1, 1};
+ long block[] = {4, 4};
+ long nblocks; // Number of hyperslab blocks
+ long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks
try {
// Copy "all" selection & space
space1 = H5.H5Scopy(H5sid);
@@ -493,26 +556,31 @@ public class TestH5S {
// Verify that the correct block is defined
assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == blocks[0]);
assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == blocks[1]);
- assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0]-1) == blocks[2]);
- assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1]-1) == blocks[3]);
+ assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0] - 1) == blocks[2]);
+ assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1] - 1) == blocks[3]);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Sget_select_bounds: " + err);
}
finally {
- try {H5.H5Sclose(space1);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(space1);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Sget_select_valid() {
- long space1 = HDF5Constants.H5I_INVALID_HID;
- long start[] = {1,0};
- long stride[] = {1,1};
- long count[] = {2,3};
- long block[] = {1,1};
- long offset[] = {0,0}; // Offset of selection
+ public void testH5Sget_select_valid()
+ {
+ long space1 = HDF5Constants.H5I_INVALID_HID;
+ long start[] = {1, 0};
+ long stride[] = {1, 1};
+ long count[] = {2, 3};
+ long block[] = {1, 1};
+ long offset[] = {0, 0}; // Offset of selection
try {
// Copy "all" selection & space
@@ -522,20 +590,20 @@ public class TestH5S {
H5.H5Sselect_hyperslab(space1, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
// Check a valid offset
- offset[0]=-1;
- offset[1]=0;
+ offset[0] = -1;
+ offset[1] = 0;
H5.H5Soffset_simple(space1, offset);
assertTrue("H5Sselect_valid", H5.H5Sselect_valid(space1));
// Check an invalid offset
- offset[0]=10;
- offset[1]=0;
+ offset[0] = 10;
+ offset[1] = 0;
H5.H5Soffset_simple(space1, offset);
assertFalse("H5Sselect_valid", H5.H5Sselect_valid(space1));
/* Reset offset */
- offset[0]=0;
- offset[1]=0;
+ offset[0] = 0;
+ offset[1] = 0;
H5.H5Soffset_simple(space1, offset);
assertTrue("H5Sselect_valid", H5.H5Sselect_valid(space1));
}
@@ -544,20 +612,25 @@ public class TestH5S {
fail("testH5Sget_select_valid: " + err);
}
finally {
- try {H5.H5Sclose(space1);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(space1);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Shyper_regular() {
- long start[] = {1,0};
- long stride[] = {1,1};
- long count[] = {2,3};
- long block[] = {1,1};
- long q_start[] = new long[2];
- long q_stride[] = new long[2];
- long q_count[] = new long[2];
- long q_block[] = new long[2];
+ public void testH5Shyper_regular()
+ {
+ long start[] = {1, 0};
+ long stride[] = {1, 1};
+ long count[] = {2, 3};
+ long block[] = {1, 1};
+ long q_start[] = new long[2];
+ long q_stride[] = new long[2];
+ long q_count[] = new long[2];
+ long q_block[] = new long[2];
boolean is_regular = false;
try {
@@ -572,7 +645,7 @@ public class TestH5S {
H5.H5Sget_regular_hyperslab(H5sid, q_start, q_stride, q_count, q_block);
/* Verify the hyperslab parameters */
- for(int u = 0; u < H5rank; u++) {
+ for (int u = 0; u < H5rank; u++) {
assertTrue("H5Sget_regular_hyperslab, start", start[u] == q_start[u]);
assertTrue("H5Sget_regular_hyperslab, stride", stride[u] == q_stride[u]);
assertTrue("H5Sget_regular_hyperslab, count", count[u] == q_count[u]);
diff --git a/java/test/TestH5Sbasic.java b/java/test/TestH5Sbasic.java
index 548ac95..3b92c92 100644
--- a/java/test/TestH5Sbasic.java
+++ b/java/test/TestH5Sbasic.java
@@ -14,6 +14,7 @@ package test;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
@@ -25,56 +26,68 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Sbasic {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
@Before
- public void checkOpenIDs() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void checkOpenIDs()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@After
- public void nextTestName() {
+ public void nextTestName()
+ {
System.out.println();
}
- @Test//(expected = HDF5LibraryException.class)
- public void testH5Sclose_invalid() throws Throwable {
+ @Test //(expected = HDF5LibraryException.class)
+ public void testH5Sclose_invalid() throws Throwable
+ {
long sid = H5.H5Sclose(-1);
assertTrue(sid == 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Screate_invalid() throws Throwable {
+ public void testH5Screate_invalid() throws Throwable
+ {
H5.H5Screate(-1);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Sget_simple_extent_type_invalid() throws Throwable {
+ public void testH5Sget_simple_extent_type_invalid() throws Throwable
+ {
H5.H5Sget_simple_extent_type(-1);
}
@Test
- public void testH5Screate_scalar() {
- long sid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Screate_scalar()
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SCALAR);
- assertTrue("H5.H5Screate_scalar",sid > 0);
+ assertTrue("H5.H5Screate_scalar", sid > 0);
class_type = H5.H5Sget_simple_extent_type(sid);
- assertTrue("H5.H5Screate_scalar: type",class_type == HDF5Constants.H5S_SCALAR);
+ assertTrue("H5.H5Screate_scalar: type", class_type == HDF5Constants.H5S_SCALAR);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Screate: " + err);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Screate_null() {
- long sid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Screate_null()
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
try {
sid = H5.H5Screate(HDF5Constants.H5S_NULL);
@@ -87,47 +100,56 @@ public class TestH5Sbasic {
fail("H5.H5Screate: " + err);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test(expected = NullPointerException.class)
- public void testH5Screate_simple_dims_null() throws Throwable {
+ public void testH5Screate_simple_dims_null() throws Throwable
+ {
H5.H5Screate_simple(2, (long[])null, null);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Screate_simple_rank_invalid() throws Throwable {
+ public void testH5Screate_simple_rank_invalid() throws Throwable
+ {
long dims[] = {5, 5};
H5.H5Screate_simple(-1, dims, null);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Screate_simple_dims_invalid() throws Throwable {
+ public void testH5Screate_simple_dims_invalid() throws Throwable
+ {
long dims[] = {2, 2};
H5.H5Screate_simple(5, dims, null);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Screate_simple_dims_exceed() throws Throwable {
- long dims[] = {0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,
- 21,22,23,24,25,26,27,28,29,30,31,32,33,35};
+ public void testH5Screate_simple_dims_exceed() throws Throwable
+ {
+ long dims[] = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
+ 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 35};
H5.H5Screate_simple(35, dims, null);
}
-//H5Screate_simple was changed to allow a dim of 0
-// @Ignore(expected = HDF5LibraryException.class)
-// public void testH5Screate_simple_dims_zero() {
-// long dims[] = {0, 0};
-// H5.H5Screate_simple(2, dims, null);
-// }
+ // H5Screate_simple was changed to allow a dim of 0
+ // @Ignore(expected = HDF5LibraryException.class)
+ // public void testH5Screate_simple_dims_zero() {
+ // long dims[] = {0, 0};
+ // H5.H5Screate_simple(2, dims, null);
+ // }
@Test
- public void testH5Screate_simple() {
- long sid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Screate_simple()
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
- int rank = 2;
- long dims[] = {5, 5};
+ int rank = 2;
+ long dims[] = {5, 5};
long maxdims[] = {10, 10};
try {
@@ -141,16 +163,21 @@ public class TestH5Sbasic {
fail("H5.H5Screate_simple: " + err);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Screate_simple_unlimted() {
- long sid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Screate_simple_unlimted()
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
- int rank = 2;
- long dims[] = {5, 5};
+ int rank = 2;
+ long dims[] = {5, 5};
long maxdims[] = {HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED};
try {
@@ -164,16 +191,21 @@ public class TestH5Sbasic {
fail("H5.H5Screate_simple: " + err);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Screate_simple_unlimted_1d() {
- long sid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Screate_simple_unlimted_1d()
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
- int rank = 1;
- long dims[] = {5};
+ int rank = 1;
+ long dims[] = {5};
long maxdims[] = {HDF5Constants.H5S_UNLIMITED};
try {
@@ -187,14 +219,19 @@ public class TestH5Sbasic {
fail("H5.H5Screate_simple: " + err);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Screate_simple_max_default() {
- long sid = HDF5Constants.H5I_INVALID_HID;
- int rank = 2;
+ public void testH5Screate_simple_max_default()
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
+ int rank = 2;
long dims[] = {5, 5};
try {
@@ -206,20 +243,25 @@ public class TestH5Sbasic {
fail("H5.H5Screate_simple: " + err);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Screate_simple_extent() {
- long sid = HDF5Constants.H5I_INVALID_HID;
- int rank = 2;
- long dims[] = {5, 5};
+ public void testH5Screate_simple_extent()
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
+ int rank = 2;
+ long dims[] = {5, 5};
long maxdims[] = {10, 10};
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
- assertTrue("H5.H5Screate_simple_extent",sid > 0);
+ assertTrue("H5.H5Screate_simple_extent", sid > 0);
H5.H5Sset_extent_simple(sid, rank, dims, maxdims);
}
catch (Throwable err) {
@@ -227,156 +269,195 @@ public class TestH5Sbasic {
fail("H5.H5Screate: " + err);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Sencode_invalid() throws Throwable {
+ public void testH5Sencode_invalid() throws Throwable
+ {
H5.H5Sencode(-1);
}
@Test(expected = NullPointerException.class)
- public void testH5Sdecode_null() throws Throwable {
+ public void testH5Sdecode_null() throws Throwable
+ {
H5.H5Sdecode(null);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Sget_regular_hyperslab_invalid() throws Throwable {
- long q_start[] = new long[2];
+ public void testH5Sget_regular_hyperslab_invalid() throws Throwable
+ {
+ long q_start[] = new long[2];
long q_stride[] = new long[2];
- long q_count[] = new long[2];
- long q_block[] = new long[2];
+ long q_count[] = new long[2];
+ long q_block[] = new long[2];
H5.H5Sget_regular_hyperslab(-1, q_start, q_stride, q_count, q_block);
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
- public void testH5Sselect_copy_invalid() throws Throwable {
+ public void testH5Sselect_copy_invalid() throws Throwable
+ {
H5.H5Sselect_copy(-1, -1);
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException.class)
- public void testH5Sselect_shape_same_invalid() throws Throwable {
+ public void testH5Sselect_shape_same_invalid() throws Throwable
+ {
H5.H5Sselect_shape_same(-1, -1);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Sselect_adjust_invalid() throws Throwable {
- long offset[][] = {{0,1},{2,4},{5,6}};
+ public void testH5Sselect_adjust_invalid() throws Throwable
+ {
+ long offset[][] = {{0, 1}, {2, 4}, {5, 6}};
H5.H5Sselect_adjust(-1, offset);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Sselect_adjust_rank_offset() throws Throwable {
- long sid = HDF5Constants.H5I_INVALID_HID;
- long offset[][] = {{0,1},{2,4},{5,6}};
+ public void testH5Sselect_adjust_rank_offset() throws Throwable
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
+ long offset[][] = {{0, 1}, {2, 4}, {5, 6}};
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
- assertTrue("H5.H5Screate_simple_extent",sid > 0);
+ assertTrue("H5.H5Screate_simple_extent", sid > 0);
H5.H5Sselect_adjust(sid, offset);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Sselect_intersect_block_invalid() throws Throwable {
+ public void testH5Sselect_intersect_block_invalid() throws Throwable
+ {
long start[] = new long[2];
- long end[] = new long[2];
+ long end[] = new long[2];
H5.H5Sselect_intersect_block(-1, start, end);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Sselect_intersect_block_rank_start() throws Throwable {
- long sid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Sselect_intersect_block_rank_start() throws Throwable
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = new long[2];
- long end[] = null;
+ long end[] = null;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
- assertTrue("H5.H5Screate_simple_extent",sid > 0);
+ assertTrue("H5.H5Screate_simple_extent", sid > 0);
H5.H5Sselect_intersect_block(sid, start, end);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Sselect_intersect_block_rank_end() throws Throwable {
- long sid = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Sselect_intersect_block_rank_end() throws Throwable
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = null;
- long end[] = new long[2];
+ long end[] = new long[2];
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
- assertTrue("H5.H5Screate_simple_extent",sid > 0);
+ assertTrue("H5.H5Screate_simple_extent", sid > 0);
H5.H5Sselect_intersect_block(sid, start, end);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException.class)
- public void testH5Sselect_project_intersection_invalid() throws Throwable {
+ public void testH5Sselect_project_intersection_invalid() throws Throwable
+ {
H5.H5Sselect_project_intersection(-1, -1, -1);
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
- public void testH5Scombine_hyperslab_invalid() throws Throwable {
+ public void testH5Scombine_hyperslab_invalid() throws Throwable
+ {
long start[] = new long[2];
long count[] = new long[2];
H5.H5Scombine_hyperslab(-1, 0, start, null, count, null);
}
@Test(expected = NullPointerException.class)
- public void testH5Scombine_hyperslab_null_start() throws Throwable {
- long sid = HDF5Constants.H5I_INVALID_HID;
- long start[] = null;
+ public void testH5Scombine_hyperslab_null_start() throws Throwable
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
+ long start[] = null;
long stride[] = null;
- long count[] = new long[2];
- long block[] = null;
+ long count[] = new long[2];
+ long block[] = null;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
- assertTrue("H5.H5Screate_simple_extent",sid > 0);
+ assertTrue("H5.H5Screate_simple_extent", sid > 0);
H5.H5Scombine_hyperslab(sid, 0, start, stride, count, block);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test(expected = NullPointerException.class)
- public void testH5Scombine_hyperslab_null_count() throws Throwable {
- long sid = HDF5Constants.H5I_INVALID_HID;
- long start[] = new long[2];
+ public void testH5Scombine_hyperslab_null_count() throws Throwable
+ {
+ long sid = HDF5Constants.H5I_INVALID_HID;
+ long start[] = new long[2];
long stride[] = null;
- long count[] = null;
- long block[] = null;
+ long count[] = null;
+ long block[] = null;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
- assertTrue("H5.H5Screate_simple_extent",sid > 0);
+ assertTrue("H5.H5Screate_simple_extent", sid > 0);
H5.H5Scombine_hyperslab(sid, 0, start, stride, count, block);
}
finally {
- try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(sid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
- public void testH5Smodify_select_invalid() throws Throwable {
+ public void testH5Smodify_select_invalid() throws Throwable
+ {
H5.H5Smodify_select(-1, 0, -1);
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
- public void testH5Scombine_select_invalid() throws Throwable {
+ public void testH5Scombine_select_invalid() throws Throwable
+ {
H5.H5Scombine_select(-1, 0, -1);
}
-
}
diff --git a/java/test/TestH5T.java b/java/test/TestH5T.java
index ed4e2a9..0121cc2 100644
--- a/java/test/TestH5T.java
+++ b/java/test/TestH5T.java
@@ -30,30 +30,38 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5T {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_FILE = "testT.h5";
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5strdid = HDF5Constants.H5I_INVALID_HID;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5strdid = HDF5Constants.H5I_INVALID_HID;
- private final void _deleteFile(String filename) {
+ private final void _deleteFile(String filename)
+ {
File file = null;
try {
file = new File(filename);
}
- catch (Throwable err) {}
+ catch (Throwable err) {
+ }
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
@Before
- public void createH5file() throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
- H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
assertTrue("H5.H5Fcreate", H5fid > 0);
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
assertTrue("H5.H5Tcopy", H5strdid > 0);
@@ -62,28 +70,39 @@ public class TestH5T {
}
@After
- public void deleteH5file() throws HDF5LibraryException {
+ public void deleteH5file() throws HDF5LibraryException
+ {
if (H5strdid >= 0)
- try {H5.H5Tclose(H5strdid);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(H5strdid);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
_deleteFile(H5_FILE);
System.out.println();
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tequal_type_error() throws Throwable {
+ public void testH5Tequal_type_error() throws Throwable
+ {
H5.H5Tequal(HDF5Constants.H5T_INTEGER, H5strdid);
}
@Test
- public void testH5Tget_class() {
+ public void testH5Tget_class()
+ {
try {
int result = H5.H5Tget_class(H5strdid);
assertTrue("H5.H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
- assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING")==0);
+ assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING") == 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -92,7 +111,8 @@ public class TestH5T {
}
@Test
- public void testH5Tget_size() {
+ public void testH5Tget_size()
+ {
long dt_size = -1;
try {
@@ -106,7 +126,8 @@ public class TestH5T {
}
@Test
- public void testH5Tset_size() {
+ public void testH5Tset_size()
+ {
long dt_size = 5;
try {
@@ -127,89 +148,105 @@ public class TestH5T {
}
@Test
- public void testH5Tarray_create() {
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- long[] adims = { 3, 5 };
-
- try {
- filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
- assertTrue("testH5Tarray_create", filetype_id >= 0);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Tarray_create.H5Tarray_create " + err);
- }
- finally {
- if (filetype_id >= 0)
- try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
- }
+ public void testH5Tarray_create()
+ {
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ long[] adims = {3, 5};
+
+ try {
+ filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
+ assertTrue("testH5Tarray_create", filetype_id >= 0);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Tarray_create.H5Tarray_create " + err);
+ }
+ finally {
+ if (filetype_id >= 0)
+ try {
+ H5.H5Tclose(filetype_id);
+ }
+ catch (Exception ex) {
+ }
+ }
}
@Test
- public void testH5Tget_array_ndims() {
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- int ndims = 0;
- long[] adims = { 3, 5 };
-
- try {
- filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Tarray_create.H5Tarray_create " + err);
- }
- assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0);
- try {
- ndims = H5.H5Tget_array_ndims(filetype_id);
- assertTrue("testH5Tget_array_ndims", ndims == 2);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err);
- }
- finally {
- if (filetype_id >= 0)
- try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
- }
+ public void testH5Tget_array_ndims()
+ {
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ int ndims = 0;
+ long[] adims = {3, 5};
+
+ try {
+ filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Tarray_create.H5Tarray_create " + err);
+ }
+ assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0);
+ try {
+ ndims = H5.H5Tget_array_ndims(filetype_id);
+ assertTrue("testH5Tget_array_ndims", ndims == 2);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err);
+ }
+ finally {
+ if (filetype_id >= 0)
+ try {
+ H5.H5Tclose(filetype_id);
+ }
+ catch (Exception ex) {
+ }
+ }
}
@Test
- public void testH5Tget_array_dims() {
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- int ndims = 0;
- long[] adims = { 3, 5 };
- long[] rdims = new long[2];
-
- try {
- filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Tarray_create.H5Tarray_create " + err);
- }
- assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0);
- try {
- ndims = H5.H5Tget_array_dims(filetype_id, rdims);
- assertTrue("testH5Tget_array_dims", ndims == 2);
- assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]);
- assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Tget_array_dims.H5Tget_array_dims " + err);
- }
- finally {
- if (filetype_id >= 0)
- try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
- }
+ public void testH5Tget_array_dims()
+ {
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ int ndims = 0;
+ long[] adims = {3, 5};
+ long[] rdims = new long[2];
+
+ try {
+ filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Tarray_create.H5Tarray_create " + err);
+ }
+ assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0);
+ try {
+ ndims = H5.H5Tget_array_dims(filetype_id, rdims);
+ assertTrue("testH5Tget_array_dims", ndims == 2);
+ assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]);
+ assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Tget_array_dims.H5Tget_array_dims " + err);
+ }
+ finally {
+ if (filetype_id >= 0)
+ try {
+ H5.H5Tclose(filetype_id);
+ }
+ catch (Exception ex) {
+ }
+ }
}
@Test
- public void testH5Tenum_functions() {
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- String enum_type ="Enum_type";
- byte[] enum_val = new byte[1];
- String enum_name = null;
+ public void testH5Tenum_functions()
+ {
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ String enum_type = "Enum_type";
+ byte[] enum_val = new byte[1];
+ String enum_name = null;
// Create a enumerate datatype
try {
@@ -221,15 +258,15 @@ public class TestH5T {
}
assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0);
try {
- enum_val[0]=10;
+ enum_val[0] = 10;
H5.H5Tenum_insert(filetype_id, "RED", enum_val);
- enum_val[0]=11;
+ enum_val[0] = 11;
H5.H5Tenum_insert(filetype_id, "GREEN", enum_val);
- enum_val[0]=12;
+ enum_val[0] = 12;
H5.H5Tenum_insert(filetype_id, "BLUE", enum_val);
- enum_val[0]=13;
+ enum_val[0] = 13;
H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val);
- enum_val[0]=14;
+ enum_val[0] = 14;
H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val);
// Query member number and member index by member name, for enumeration type.
@@ -237,7 +274,8 @@ public class TestH5T {
assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
// Commit enumeration datatype and close it */
- H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Tclose(filetype_id);
@@ -250,17 +288,17 @@ public class TestH5T {
assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
// Query member value by member name, for enumeration type
- H5.H5Tenum_valueof (filetype_id, "ORANGE", enum_val);
- assertTrue("Incorrect value for enum member", enum_val[0]==13);
+ H5.H5Tenum_valueof(filetype_id, "ORANGE", enum_val);
+ assertTrue("Incorrect value for enum member", enum_val[0] == 13);
// Query member value by member index, for enumeration type
- H5.H5Tget_member_value (filetype_id, 2, enum_val);
- assertTrue("Incorrect value for enum member", enum_val[0]==12);
+ H5.H5Tget_member_value(filetype_id, 2, enum_val);
+ assertTrue("Incorrect value for enum member", enum_val[0] == 12);
// Query member name by member value, for enumeration type
enum_val[0] = 14;
- enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16);
- assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW")==0);
+ enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16);
+ assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW") == 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -268,14 +306,19 @@ public class TestH5T {
}
finally {
if (filetype_id >= 0)
- try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(filetype_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Tenum_create_functions() {
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- byte[] enum_val = new byte[1];
+ public void testH5Tenum_create_functions()
+ {
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ byte[] enum_val = new byte[1];
// Create a enumerate datatype
try {
@@ -287,15 +330,15 @@ public class TestH5T {
}
assertTrue("testH5Tenum_create_functions:H5Tcreate", filetype_id >= 0);
try {
- enum_val[0]=10;
+ enum_val[0] = 10;
H5.H5Tenum_insert(filetype_id, "RED", enum_val);
- enum_val[0]=11;
+ enum_val[0] = 11;
H5.H5Tenum_insert(filetype_id, "GREEN", enum_val);
- enum_val[0]=12;
+ enum_val[0] = 12;
H5.H5Tenum_insert(filetype_id, "BLUE", enum_val);
- enum_val[0]=13;
+ enum_val[0] = 13;
H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val);
- enum_val[0]=14;
+ enum_val[0] = 14;
H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val);
// Query member number and member index by member name, for enumeration type.
@@ -308,14 +351,19 @@ public class TestH5T {
}
finally {
if (filetype_id >= 0)
- try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(filetype_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Topaque_functions() {
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
- String opaque_name = null;
+ public void testH5Topaque_functions()
+ {
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ String opaque_name = null;
// Create a opaque datatype
try {
@@ -330,7 +378,7 @@ public class TestH5T {
try {
H5.H5Tset_tag(filetype_id, "opaque type");
opaque_name = H5.H5Tget_tag(filetype_id);
- assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type")==0);
+ assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type") == 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -338,67 +386,83 @@ public class TestH5T {
}
finally {
if (filetype_id >= 0)
- try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(filetype_id);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Tvlen_create() {
+ public void testH5Tvlen_create()
+ {
long filetype_id = HDF5Constants.H5I_INVALID_HID;
- try {
- filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1);
- assertTrue("testH5Tvlen_create", filetype_id >= 0);
-
- // Check if datatype is VL type
- int vlclass = H5.H5Tget_class(filetype_id);
- assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
- assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Tvlen_create.H5Tvlen_create " + err);
- }
- finally {
- if (filetype_id >= 0)
- try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
- }
+ try {
+ filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1);
+ assertTrue("testH5Tvlen_create", filetype_id >= 0);
+
+ // Check if datatype is VL type
+ int vlclass = H5.H5Tget_class(filetype_id);
+ assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
+ assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Tvlen_create.H5Tvlen_create " + err);
+ }
+ finally {
+ if (filetype_id >= 0)
+ try {
+ H5.H5Tclose(filetype_id);
+ }
+ catch (Exception ex) {
+ }
+ }
}
@Test
- public void testH5Tis_variable_str() {
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
-
- try {
- filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
- assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0);
-
- // Convert to variable-length string
- H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE);
-
- // Check if datatype is VL string
- int vlclass = H5.H5Tget_class(filetype_id);
- assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
- assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
-
- assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id));
-
- // Verify that the class detects as a string
- assertTrue("testH5Tis_variable_str:H5Tdetect_class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING));
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Tis_variable_str " + err);
- }
- finally {
- if (filetype_id >= 0)
- try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
- }
+ public void testH5Tis_variable_str()
+ {
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
+
+ try {
+ filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
+ assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0);
+
+ // Convert to variable-length string
+ H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE);
+
+ // Check if datatype is VL string
+ int vlclass = H5.H5Tget_class(filetype_id);
+ assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
+ assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
+
+ assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id));
+
+ // Verify that the class detects as a string
+ assertTrue("testH5Tis_variable_str:H5Tdetect_class",
+ H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING));
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Tis_variable_str " + err);
+ }
+ finally {
+ if (filetype_id >= 0)
+ try {
+ H5.H5Tclose(filetype_id);
+ }
+ catch (Exception ex) {
+ }
+ }
}
@Test
- public void testH5Tcompound_functions() {
- long filetype_id = HDF5Constants.H5I_INVALID_HID;
+ public void testH5Tcompound_functions()
+ {
+ long filetype_id = HDF5Constants.H5I_INVALID_HID;
// Create a compound datatype
try {
@@ -420,28 +484,34 @@ public class TestH5T {
// We started to support this function for compound type in 1.8.6 release.
int order = H5.H5Tget_order(filetype_id);
assertFalse("Can't get order for compound type.", order == HDF5Constants.H5T_ORDER_ERROR);
- assertTrue("Wrong order for this type.", (order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE));
+ assertTrue("Wrong order for this type.",
+ (order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE));
// Make certain that the correct classes can be detected
- assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND));
+ assertTrue("Can't get correct class",
+ H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND));
assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_FLOAT));
// Make certain that an incorrect class is not detected
assertFalse("Can get incorrect class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_TIME));
// Query member name by member index
- String index_name = H5.H5Tget_member_name (filetype_id, 0);
- assertTrue("Incorrect name for member index", index_name.compareTo("Lon")==0);
+ String index_name = H5.H5Tget_member_name(filetype_id, 0);
+ assertTrue("Incorrect name for member index", index_name.compareTo("Lon") == 0);
// Query member offset by member no
- long index_offset = H5.H5Tget_member_offset (filetype_id, 1);
+ long index_offset = H5.H5Tget_member_offset(filetype_id, 1);
assertTrue("Incorrect offset for member no", index_offset == 8);
// Query member type by member index
- long index_type = H5.H5Tget_member_type (filetype_id, 0);
- assertTrue("Incorrect type for member index", H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type));
+ long index_type = H5.H5Tget_member_type(filetype_id, 0);
+ assertTrue("Incorrect type for member index",
+ H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type));
if (index_type >= 0)
- try {H5.H5Tclose(index_type);} catch (Exception ex) {}
-
+ try {
+ H5.H5Tclose(index_type);
+ }
+ catch (Exception ex) {
+ }
}
catch (Throwable err) {
err.printStackTrace();
@@ -449,8 +519,11 @@ public class TestH5T {
}
finally {
if (filetype_id >= 0)
- try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(filetype_id);
+ }
+ catch (Exception ex) {
+ }
}
}
-
}
diff --git a/java/test/TestH5Tbasic.java b/java/test/TestH5Tbasic.java
index 7aac2ab..8fb1e58 100644
--- a/java/test/TestH5Tbasic.java
+++ b/java/test/TestH5Tbasic.java
@@ -15,6 +15,7 @@ package test;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
@@ -25,24 +26,28 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Tbasic {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
@Before
- public void checkOpenIDs() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void checkOpenIDs()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@After
- public void nextTestName() {
+ public void nextTestName()
+ {
System.out.println();
}
@Test
- public void testH5Tcopy() {
+ public void testH5Tcopy()
+ {
long H5strdid = HDF5Constants.H5I_INVALID_HID;
try {
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
- assertTrue("H5.H5Tcopy",H5strdid > 0);
+ assertTrue("H5.H5Tcopy", H5strdid > 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -50,18 +55,23 @@ public class TestH5Tbasic {
}
finally {
if (H5strdid >= 0)
- try {H5.H5Tclose(H5strdid);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(H5strdid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Tequal() {
+ public void testH5Tequal()
+ {
long H5strdid = HDF5Constants.H5I_INVALID_HID;
try {
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
- assertTrue("H5.H5Tcopy",H5strdid > 0);
+ assertTrue("H5.H5Tcopy", H5strdid > 0);
boolean teq = H5.H5Tequal(HDF5Constants.H5T_C_S1, H5strdid);
- assertTrue("H5.H5Tequal",teq);
+ assertTrue("H5.H5Tequal", teq);
}
catch (Throwable err) {
err.printStackTrace();
@@ -69,18 +79,23 @@ public class TestH5Tbasic {
}
finally {
if (H5strdid >= 0)
- try {H5.H5Tclose(H5strdid);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(H5strdid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Tequal_not() {
+ public void testH5Tequal_not()
+ {
long H5strdid = HDF5Constants.H5I_INVALID_HID;
try {
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_STD_U64LE);
- assertTrue("H5.H5Tcopy",H5strdid > 0);
+ assertTrue("H5.H5Tcopy", H5strdid > 0);
boolean teq = H5.H5Tequal(HDF5Constants.H5T_IEEE_F32BE, H5strdid);
- assertFalse("H5.H5Tequal",teq);
+ assertFalse("H5.H5Tequal", teq);
}
catch (Throwable err) {
err.printStackTrace();
@@ -88,22 +103,27 @@ public class TestH5Tbasic {
}
finally {
if (H5strdid >= 0)
- try {H5.H5Tclose(H5strdid);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(H5strdid);
+ }
+ catch (Exception ex) {
+ }
}
}
@Test
- public void testH5Tconvert() {
- String[] strs = {"a1234","b1234"};
- int srcLen = 5;
- int dstLen = 10;
- long srcId = HDF5Constants.H5I_INVALID_HID;
- long dstId = HDF5Constants.H5I_INVALID_HID;
- int dimSize = strs.length;
- byte[] buf = new byte[dimSize*dstLen];
-
- for (int i=0; i<dimSize; i++)
- System.arraycopy(strs[i].getBytes(), 0, buf, i*srcLen, 5);
+ public void testH5Tconvert()
+ {
+ String[] strs = {"a1234", "b1234"};
+ int srcLen = 5;
+ int dstLen = 10;
+ long srcId = HDF5Constants.H5I_INVALID_HID;
+ long dstId = HDF5Constants.H5I_INVALID_HID;
+ int dimSize = strs.length;
+ byte[] buf = new byte[dimSize * dstLen];
+
+ for (int i = 0; i < dimSize; i++)
+ System.arraycopy(strs[i].getBytes(), 0, buf, i * srcLen, 5);
try {
srcId = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
@@ -119,22 +139,31 @@ public class TestH5Tbasic {
fail("testH5Tconvert: " + err);
}
finally {
- try {H5.H5Tclose(srcId);} catch (Exception ex) {}
- try {H5.H5Tclose(dstId);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(srcId);
+ }
+ catch (Exception ex) {
+ }
+ try {
+ H5.H5Tclose(dstId);
+ }
+ catch (Exception ex) {
+ }
}
- for (int i=0; i<strs.length; i++) {
- assertTrue((new String(buf, i*dstLen, dstLen)).startsWith(strs[i]));
+ for (int i = 0; i < strs.length; i++) {
+ assertTrue((new String(buf, i * dstLen, dstLen)).startsWith(strs[i]));
}
}
@Test
- public void testH5Torder_size() {
+ public void testH5Torder_size()
+ {
long H5strdid = HDF5Constants.H5I_INVALID_HID;
try {
// Fixed length string
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
- assertTrue("H5.H5Tcopy",H5strdid > 0);
+ assertTrue("H5.H5Tcopy", H5strdid > 0);
H5.H5Tset_size(H5strdid, (long)5);
assertTrue(HDF5Constants.H5T_ORDER_NONE == H5.H5Tget_order(H5strdid));
H5.H5Tset_order(H5strdid, HDF5Constants.H5T_ORDER_NONE);
@@ -152,7 +181,11 @@ public class TestH5Tbasic {
}
finally {
if (H5strdid >= 0)
- try {H5.H5Tclose(H5strdid);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(H5strdid);
+ }
+ catch (Exception ex) {
+ }
}
}
}
diff --git a/java/test/TestH5Tparams.java b/java/test/TestH5Tparams.java
index 92a034c..a1710af 100644
--- a/java/test/TestH5Tparams.java
+++ b/java/test/TestH5Tparams.java
@@ -13,6 +13,7 @@
package test;
import static org.junit.Assert.assertTrue;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
@@ -23,385 +24,459 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Tparams {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
@Before
- public void checkOpenIDs() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void checkOpenIDs()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@After
- public void nextTestName() {
+ public void nextTestName()
+ {
System.out.println();
}
- @Test//(expected = HDF5LibraryException.class)
- public void testH5Tclose_invalid() throws Throwable {
+ @Test //(expected = HDF5LibraryException.class)
+ public void testH5Tclose_invalid() throws Throwable
+ {
long tid = H5.H5Tclose(-1);
assertTrue(tid == 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tcopy_invalid() throws Throwable {
+ public void testH5Tcopy_invalid() throws Throwable
+ {
H5.H5Tcopy(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tequal_invalid() throws Throwable {
+ public void testH5Tequal_invalid() throws Throwable
+ {
H5.H5Tequal(-1, -1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tlock_invalid() throws Throwable {
+ public void testH5Tlock_invalid() throws Throwable
+ {
H5.H5Tlock(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_class_invalid() throws Throwable {
+ public void testH5Tget_class_invalid() throws Throwable
+ {
H5.H5Tget_class(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_size_invalid() throws Throwable {
+ public void testH5Tget_size_invalid() throws Throwable
+ {
H5.H5Tget_size(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_size_invalid() throws Throwable {
+ public void testH5Tset_size_invalid() throws Throwable
+ {
H5.H5Tset_size(-1, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_order_invalid() throws Throwable {
+ public void testH5Tget_order_invalid() throws Throwable
+ {
H5.H5Tget_order(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_order_invalid() throws Throwable {
+ public void testH5Tset_order_invalid() throws Throwable
+ {
H5.H5Tset_order(-1, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_precision_invalid() throws Throwable {
+ public void testH5Tget_precision_invalid() throws Throwable
+ {
H5.H5Tget_precision(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_precision_long_invalid() throws Throwable {
+ public void testH5Tget_precision_long_invalid() throws Throwable
+ {
H5.H5Tget_precision_long(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_precision_invalid() throws Throwable {
+ public void testH5Tset_precision_invalid() throws Throwable
+ {
H5.H5Tset_precision(-1, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_offset_invalid() throws Throwable {
+ public void testH5Tget_offset_invalid() throws Throwable
+ {
H5.H5Tget_offset(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_offset_invalid() throws Throwable {
+ public void testH5Tset_offset_invalid() throws Throwable
+ {
H5.H5Tset_offset(-1, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tcreate_invalid() throws Throwable {
+ public void testH5Tcreate_invalid() throws Throwable
+ {
H5.H5Tcreate(-1, (long)0);
}
@Test(expected = NullPointerException.class)
- public void testH5Topen_null() throws Throwable {
+ public void testH5Topen_null() throws Throwable
+ {
H5.H5Topen(-1, null, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Topen_invalid() throws Throwable {
+ public void testH5Topen_invalid() throws Throwable
+ {
H5.H5Topen(-1, "Bogus", 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Tcommit_null() throws Throwable {
+ public void testH5Tcommit_null() throws Throwable
+ {
H5.H5Tcommit(-1, null, 0, -1, -1, -1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tcommit_invalid() throws Throwable {
+ public void testH5Tcommit_invalid() throws Throwable
+ {
H5.H5Tcommit(-1, "Bogus", -1, -1, -1, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Tget_pad_null() throws Throwable {
+ public void testH5Tget_pad_null() throws Throwable
+ {
H5.H5Tget_pad(-1, null);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_pad_invalid() throws Throwable {
+ public void testH5Tget_pad_invalid() throws Throwable
+ {
int[] pad = new int[2];
H5.H5Tget_pad(-1, pad);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_pad_invalid() throws Throwable {
+ public void testH5Tset_pad_invalid() throws Throwable
+ {
H5.H5Tset_pad(-1, -1, -1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_sign_invalid() throws Throwable {
+ public void testH5Tget_sign_invalid() throws Throwable
+ {
H5.H5Tget_sign(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_sign_invalid() throws Throwable {
+ public void testH5Tset_sign_invalid() throws Throwable
+ {
H5.H5Tset_sign(-1, 0);
}
@Test(expected = NullPointerException.class)
- public void testH5Tget_fields_null() throws Throwable {
+ public void testH5Tget_fields_null() throws Throwable
+ {
H5.H5Tget_fields(-1, (long[])null);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Tget_fields_length_invalid() throws Throwable {
+ public void testH5Tget_fields_length_invalid() throws Throwable
+ {
long[] fields = new long[2];
H5.H5Tget_fields(-1, fields);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_fields_invalid() throws Throwable {
+ public void testH5Tget_fields_invalid() throws Throwable
+ {
long[] fields = new long[5];
H5.H5Tget_fields(-1, fields);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_fields_invalid() throws Throwable {
+ public void testH5Tset_fields_invalid() throws Throwable
+ {
H5.H5Tset_fields(-1, -1, -1, -1, -1, -1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_ebias_invalid() throws Throwable {
+ public void testH5Tget_ebias_invalid() throws Throwable
+ {
H5.H5Tget_ebias(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_ebias_long_invalid() throws Throwable {
+ public void testH5Tget_ebias_long_invalid() throws Throwable
+ {
H5.H5Tget_ebias_long(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_ebias_invalid() throws Throwable {
+ public void testH5Tset_ebias_invalid() throws Throwable
+ {
H5.H5Tset_ebias(-1, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_norm_invalid() throws Throwable {
+ public void testH5Tget_norm_invalid() throws Throwable
+ {
H5.H5Tget_norm(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_norm_invalid() throws Throwable {
+ public void testH5Tset_norm_invalid() throws Throwable
+ {
H5.H5Tset_norm(-1, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_inpad_invalid() throws Throwable {
+ public void testH5Tget_inpad_invalid() throws Throwable
+ {
H5.H5Tget_inpad(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_inpad_invalid() throws Throwable {
+ public void testH5Tset_inpad_invalid() throws Throwable
+ {
H5.H5Tset_inpad(-1, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_cset_invalid() throws Throwable {
+ public void testH5Tget_cset_invalid() throws Throwable
+ {
H5.H5Tget_cset(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_cset_invalid() throws Throwable {
+ public void testH5Tset_cset_invalid() throws Throwable
+ {
H5.H5Tset_cset(-1, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_strpad_invalid() throws Throwable {
+ public void testH5Tget_strpad_invalid() throws Throwable
+ {
H5.H5Tget_strpad(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_strpad_invalid() throws Throwable {
+ public void testH5Tset_strpad_invalid() throws Throwable
+ {
H5.H5Tset_strpad(-1, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_nmembers_invalid() throws Throwable {
+ public void testH5Tget_nmembers_invalid() throws Throwable
+ {
H5.H5Tget_nmembers(-1);
}
@Test(expected = NullPointerException.class)
- public void testH5Tget_member_index_null() throws Throwable {
+ public void testH5Tget_member_index_null() throws Throwable
+ {
H5.H5Tget_member_index(-1, null);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_member_index_invalid() throws Throwable {
+ public void testH5Tget_member_index_invalid() throws Throwable
+ {
H5.H5Tget_member_index(-1, "Bogus");
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_member_type_invalid() throws Throwable {
+ public void testH5Tget_member_type_invalid() throws Throwable
+ {
H5.H5Tget_member_type(-1, -1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_member_class_invalid() throws Throwable {
+ public void testH5Tget_member_class_invalid() throws Throwable
+ {
H5.H5Tget_member_class(-1, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Tinsert_null() throws Throwable {
+ public void testH5Tinsert_null() throws Throwable
+ {
H5.H5Tinsert(-1, null, 0, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tinsert_invalid() throws Throwable {
+ public void testH5Tinsert_invalid() throws Throwable
+ {
H5.H5Tinsert(-1, "Bogus", 0, 0);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tpack_invalid() throws Throwable {
+ public void testH5Tpack_invalid() throws Throwable
+ {
H5.H5Tpack(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Treclaim_invalid() throws Throwable {
+ public void testH5Treclaim_invalid() throws Throwable
+ {
byte[] buf = new byte[2];
H5.H5Treclaim(-1, -1, -1, buf);
}
@Test(expected = NullPointerException.class)
- public void testH5Treclaim_null() throws Throwable {
+ public void testH5Treclaim_null() throws Throwable
+ {
H5.H5Treclaim(-1, -1, -1, null);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tvlen_create_invalid() throws Throwable {
+ public void testH5Tvlen_create_invalid() throws Throwable
+ {
H5.H5Tvlen_create(-1);
}
@Test(expected = NullPointerException.class)
- public void testH5Tset_tag_null() throws Throwable {
+ public void testH5Tset_tag_null() throws Throwable
+ {
H5.H5Tset_tag(-1, null);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tset_tag_invalid() throws Throwable {
+ public void testH5Tset_tag_invalid() throws Throwable
+ {
H5.H5Tset_tag(-1, "Bogus");
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_super_invalid() throws Throwable {
+ public void testH5Tget_super_invalid() throws Throwable
+ {
H5.H5Tget_super(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tenum_create_invalid() throws Throwable {
+ public void testH5Tenum_create_invalid() throws Throwable
+ {
H5.H5Tenum_create(-1);
}
@Test(expected = NullPointerException.class)
- public void testH5Tenum_insert_name_null() throws Throwable {
+ public void testH5Tenum_insert_name_null() throws Throwable
+ {
H5.H5Tenum_insert(-1, null, (byte[])null);
}
@Test(expected = NullPointerException.class)
- public void testH5Tenum_insert_null() throws Throwable {
+ public void testH5Tenum_insert_null() throws Throwable
+ {
H5.H5Tenum_insert(-1, "bogus", (byte[])null);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tenum_insert_invalid() throws Throwable {
+ public void testH5Tenum_insert_invalid() throws Throwable
+ {
byte[] enumtype = new byte[2];
H5.H5Tenum_insert(-1, "bogus", enumtype);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Tenum_nameof_invalid_size() throws Throwable {
+ public void testH5Tenum_nameof_invalid_size() throws Throwable
+ {
H5.H5Tenum_nameof(-1, null, -1);
}
@Test(expected = NullPointerException.class)
- public void testH5Tenum_nameof_value_null() throws Throwable {
+ public void testH5Tenum_nameof_value_null() throws Throwable
+ {
H5.H5Tenum_nameof(-1, null, 1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tenum_nameof_invalid() throws Throwable {
+ public void testH5Tenum_nameof_invalid() throws Throwable
+ {
byte[] btype = new byte[2];
H5.H5Tenum_nameof(-1, btype, 1);
}
@Test(expected = NullPointerException.class)
- public void testH5Tenum_valueof_name_null() throws Throwable {
+ public void testH5Tenum_valueof_name_null() throws Throwable
+ {
H5.H5Tenum_valueof(-1, null, (byte[])null);
}
@Test(expected = NullPointerException.class)
- public void testH5Tenum_valueof_null() throws Throwable {
+ public void testH5Tenum_valueof_null() throws Throwable
+ {
H5.H5Tenum_valueof(-1, "bogus", (byte[])null);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tenum_valueof_invalid() throws Throwable {
+ public void testH5Tenum_valueof_invalid() throws Throwable
+ {
byte[] btype = new byte[2];
H5.H5Tenum_valueof(-1, "bogus", btype);
}
@Test(expected = NullPointerException.class)
- public void testH5Tget_member_value_null() throws Throwable {
+ public void testH5Tget_member_value_null() throws Throwable
+ {
H5.H5Tget_member_value(-1, -1, (byte[])null);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_member_value_invalid() throws Throwable {
+ public void testH5Tget_member_value_invalid() throws Throwable
+ {
byte[] btype = new byte[2];
H5.H5Tget_member_value(-1, -1, btype);
}
@Test(expected = IllegalArgumentException.class)
- public void testH5Tarray_create_invalid() throws Throwable {
+ public void testH5Tarray_create_invalid() throws Throwable
+ {
H5.H5Tarray_create(-1, -1, null);
}
@Test(expected = NullPointerException.class)
- public void testH5Tarray_create_value_null() throws Throwable {
+ public void testH5Tarray_create_value_null() throws Throwable
+ {
H5.H5Tarray_create(-1, 1, null);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_array_ndims_invalid() throws Throwable {
+ public void testH5Tget_array_ndims_invalid() throws Throwable
+ {
H5.H5Tget_array_ndims(-1);
}
@Test(expected = NullPointerException.class)
- public void testH5Tget_array_dims_null() throws Throwable {
+ public void testH5Tget_array_dims_null() throws Throwable
+ {
H5.H5Tget_array_dims(-1, null);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tget_native_type_invalid() throws Throwable {
+ public void testH5Tget_native_type_invalid() throws Throwable
+ {
H5.H5Tget_native_type(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Tflush_invalid() throws Throwable {
+ public void testH5Tflush_invalid() throws Throwable
+ {
H5.H5Tflush(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Trefresh_invalid() throws Throwable {
+ public void testH5Trefresh_invalid() throws Throwable
+ {
H5.H5Trefresh(-1);
}
-
}
diff --git a/java/test/TestH5VL.java b/java/test/TestH5VL.java
index 4253d20..99505ae 100644
--- a/java/test/TestH5VL.java
+++ b/java/test/TestH5VL.java
@@ -16,12 +16,13 @@ import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
+
+import java.io.File;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
-import java.io.File;
-
import org.junit.After;
import org.junit.Before;
import org.junit.Rule;
@@ -29,28 +30,37 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5VL {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
- private final void _deleteFile(String filename) {
+ private final void _deleteFile(String filename)
+ {
File file = new File(filename);
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
}
}
@Before
- public void checkOpenIDs() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void checkOpenIDs()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@After
- public void nextTestName() {
+ public void nextTestName()
+ {
System.out.println();
}
@Test
- public void testH5VLnative_init() {
+ public void testH5VLnative_init()
+ {
try {
boolean is_registered;
@@ -70,11 +80,12 @@ public class TestH5VL {
}
@Test
- public void testH5VLget_connector_id() {
+ public void testH5VLget_connector_id()
+ {
String H5_FILE = "testFvl.h5";
- long H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ long H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
try {
long native_id = H5.H5VLget_connector_id(H5fid);
@@ -95,14 +106,19 @@ public class TestH5VL {
}
finally {
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
_deleteFile(H5_FILE);
}
}
@Test
- public void testH5VLget_connector_id_by_name() {
+ public void testH5VLget_connector_id_by_name()
+ {
try {
long native_id = H5.H5VLget_connector_id_by_name(HDF5Constants.H5VL_NATIVE_NAME);
assertTrue("H5.H5VLget_connector_id_by_name H5VL_NATIVE_NAME", native_id >= 0);
@@ -115,7 +131,8 @@ public class TestH5VL {
}
@Test
- public void testH5VLget_connector_id_by_value() {
+ public void testH5VLget_connector_id_by_value()
+ {
try {
long native_id = H5.H5VLget_connector_id_by_value(HDF5Constants.H5VL_NATIVE_VALUE);
assertTrue("H5.H5VLget_connector_id_by_value H5VL_NATIVE_VALUE", native_id >= 0);
@@ -128,11 +145,12 @@ public class TestH5VL {
}
@Test
- public void testH5VLget_connector_name() {
+ public void testH5VLget_connector_name()
+ {
String H5_FILE = "testFvl.h5";
- long H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ long H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
try {
@@ -145,7 +163,8 @@ public class TestH5VL {
*/
String connector = System.getenv("HDF5_VOL_CONNECTOR");
if (connector == null)
- assertTrue("H5.H5VLget_connector_name H5VL_NATIVE", native_name.compareToIgnoreCase(HDF5Constants.H5VL_NATIVE_NAME)==0);
+ assertTrue("H5.H5VLget_connector_name H5VL_NATIVE",
+ native_name.compareToIgnoreCase(HDF5Constants.H5VL_NATIVE_NAME) == 0);
}
catch (Throwable err) {
err.printStackTrace();
@@ -153,20 +172,25 @@ public class TestH5VL {
}
finally {
if (H5fid > 0) {
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
}
_deleteFile(H5_FILE);
}
}
@Test(expected = HDF5LibraryException.class)
- public void testH5VLclose_NegativeID() throws Throwable {
+ public void testH5VLclose_NegativeID() throws Throwable
+ {
H5.H5VLclose(-1);
}
@Test(expected = HDF5LibraryException.class)
- public void testH5VLunregister_connector_NegativeID() throws Throwable {
+ public void testH5VLunregister_connector_NegativeID() throws Throwable
+ {
H5.H5VLunregister_connector(-1);
}
}
-
diff --git a/java/test/TestH5Z.java b/java/test/TestH5Z.java
index fde8f1a..bc6bfc0 100644
--- a/java/test/TestH5Z.java
+++ b/java/test/TestH5Z.java
@@ -14,6 +14,7 @@ package test;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
+
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
@@ -25,20 +26,24 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Z {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
@Before
- public void checkOpenIDs() {
- assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
+ public void checkOpenIDs()
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
@After
- public void nextTestName() {
+ public void nextTestName()
+ {
System.out.println();
}
@Test
- public void testH5Zfilter_avail() {
+ public void testH5Zfilter_avail()
+ {
try {
int filter_found;
@@ -64,34 +69,46 @@ public class TestH5Z {
}
@Test
- public void testH5Zget_filter_info() {
+ public void testH5Zget_filter_info()
+ {
try {
int filter_flag;
filter_flag = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_FLETCHER32);
- assertTrue("H5.H5Zget_filter_info_FLETCHER32_DECODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0);
- assertTrue("H5.H5Zget_filter_info_FLETCHER32_ENCODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0);
+ assertTrue("H5.H5Zget_filter_info_FLETCHER32_DECODE_ENABLED",
+ (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0);
+ assertTrue("H5.H5Zget_filter_info_FLETCHER32_ENCODE_ENABLED",
+ (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0);
filter_flag = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_NBIT);
- assertTrue("H5.H5Zget_filter_info_NBIT_DECODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0);
- assertTrue("H5.H5Zget_filter_info_NBIT_ENCODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0);
+ assertTrue("H5.H5Zget_filter_info_NBIT_DECODE_ENABLED",
+ (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0);
+ assertTrue("H5.H5Zget_filter_info_NBIT_ENCODE_ENABLED",
+ (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0);
filter_flag = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_SCALEOFFSET);
- assertTrue("H5.H5Zget_filter_info_SCALEOFFSET_DECODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0);
- assertTrue("H5.H5Zget_filter_info_SCALEOFFSET_ENCODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0);
+ assertTrue("H5.H5Zget_filter_info_SCALEOFFSET_DECODE_ENABLED",
+ (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0);
+ assertTrue("H5.H5Zget_filter_info_SCALEOFFSET_ENCODE_ENABLED",
+ (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0);
filter_flag = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_SHUFFLE);
- assertTrue("H5.H5Zget_filter_info_DECODE_SHUFFLE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0);
- assertTrue("H5.H5Zget_filter_info_ENCODE_SHUFFLE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0);
+ assertTrue("H5.H5Zget_filter_info_DECODE_SHUFFLE_ENABLED",
+ (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0);
+ assertTrue("H5.H5Zget_filter_info_ENCODE_SHUFFLE_ENABLED",
+ (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0);
- if(1 == H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_DEFLATE)) {
+ if (1 == H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_DEFLATE)) {
filter_flag = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_DEFLATE);
- assertTrue("H5.H5Zget_filter_info_DEFLATE_DECODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0);
- assertTrue("H5.H5Zget_filter_info_DEFLATE_ENCODE_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0);
+ assertTrue("H5.H5Zget_filter_info_DEFLATE_DECODE_ENABLED",
+ (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0);
+ assertTrue("H5.H5Zget_filter_info_DEFLATE_ENCODE_ENABLED",
+ (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_ENCODE_ENABLED) > 0);
}
- if(1 == H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_SZIP)) {
+ if (1 == H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_SZIP)) {
filter_flag = H5.H5Zget_filter_info(HDF5Constants.H5Z_FILTER_SZIP);
// Decode should always be available, but we have no way of determining
// if encode is so don't assert on that.
- assertTrue("H5.H5Zget_filter_info_DECODE_SZIP_ENABLED", (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0);
+ assertTrue("H5.H5Zget_filter_info_DECODE_SZIP_ENABLED",
+ (filter_flag & HDF5Constants.H5Z_FILTER_CONFIG_DECODE_ENABLED) > 0);
}
}
catch (Throwable err) {
@@ -101,7 +118,8 @@ public class TestH5Z {
}
@Test(expected = HDF5LibraryException.class)
- public void testH5Zunregister_predefined() throws Throwable {
+ public void testH5Zunregister_predefined() throws Throwable
+ {
int filter_found = H5.H5Zfilter_avail(HDF5Constants.H5Z_FILTER_SHUFFLE);
assertTrue("H5.H5Zfilter_avail", filter_found > 0);