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| author | Dana Robinson <derobins@hdfgroup.org> | 2018-12-20 11:03:16 (GMT) |
|---|---|---|
| committer | Dana Robinson <derobins@hdfgroup.org> | 2018-12-20 11:03:16 (GMT) |
| commit | fe1a5b4279bbbf705c6d3b3886ffe2a963bd07ec (patch) | |
| tree | a482951f2d94a0f3d4e85b65791f73c0493874af /release_docs/INSTALL_parallel | |
| parent | 34c0328c4d44a26916ebe0756ad5d74ac3c1dec8 (diff) | |
| download | hdf5-fe1a5b4279bbbf705c6d3b3886ffe2a963bd07ec.zip hdf5-fe1a5b4279bbbf705c6d3b3886ffe2a963bd07ec.tar.gz hdf5-fe1a5b4279bbbf705c6d3b3886ffe2a963bd07ec.tar.bz2 | |
Added a shell script so we can run the parallel flush test
on OpenMPI.
Diffstat (limited to 'release_docs/INSTALL_parallel')
| -rw-r--r-- | release_docs/INSTALL_parallel | 17 |
1 files changed, 13 insertions, 4 deletions
diff --git a/release_docs/INSTALL_parallel b/release_docs/INSTALL_parallel index f32fffc..1bf1dd4 100644 --- a/release_docs/INSTALL_parallel +++ b/release_docs/INSTALL_parallel @@ -100,9 +100,9 @@ qsub -I -q debug -l mppwidth=8 mkdir build-hdf5; cd build-hdf5/ - configure HDF5: - RUNSERIAL="aprun -q -n 1" RUNPARALLEL="aprun -q -n 6" FC=ftn CC=cc /path/to/source/configure --enable-fortran --enable-parallel --disable-shared + RUNSERIAL="aprun -q -n 1" RUNPARALLEL="aprun -q -n 6" RUNPARALLELSCRIPT="aprun -q -n 6" FC=ftn CC=cc /path/to/source/configure --enable-fortran --enable-parallel --disable-shared - RUNSERIAL and RUNPARALLEL tells the library how it should launch programs that are part of the build procedure. + RUNSERIAL, RUNPARALLEL, and RUNPARALLELSCRIPT tell the library how it should launch programs that are part of the build procedure. - Compile HDF5: gmake @@ -155,12 +155,21 @@ to run a parallel application on one processor and on many processors. If the compiler is `mpicc' and the user hasn't specified values for RUNSERIAL and RUNPARALLEL then configure chooses `mpiexec' from the same directory as `mpicc': - RUNSERIAL: /usr/local/mpi/bin/mpiexec -np 1 - RUNPARALLEL: /usr/local/mpi/bin/mpiexec -np $${NPROCS:=6} + RUNSERIAL: mpiexec -n 1 + RUNPARALLEL: mpiexec -n $${NPROCS:=6} The `$${NPROCS:=6}' will be substituted with the value of the NPROCS environment variable at the time `make check' is run (or the value 6). +RUNPARALLELSCRIPT is identical to RUNPARALLEL but is used in parallel shell +scripts and lacks the environment variable protection. + + RUNPARALLELSCRIPT: mpiexec -n ${NPROCS:=6} + +Note that some MPI implementations (e.g. OpenMPI 4.0) disallow oversubscribing +nodes by default so you'll have to either set NPROCS equal to the number of +processors available (or fewer) or redefine RUNPARALLEL(SCRIPT) with appropriate +flag(s) (--oversubscribe in OpenMPI). 4. Parallel test suite ---------------------- |