Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)

* commit 'cf110b33c825f15e8a101b5772d15ec282ff85bf': (105 commits)
  Unify the test (t_bigio.c) between hdf5_1_10 and develop
  Remove comparison to NULL for variables to be freed.
  Add HDfree of vector, matrix_out and matrix_out1 previously HDmalloced in coll_write_test().
  merged from develop
  merged from develop
  removed duplicate code
  Code improvement Description:     - Removed memory leaks caused by accidentally invoking p_get_member_type     - Added the call to test_lcpl, missed previously Platforms tested:     Linux/64 (jelly)     Linux/ppc64 (ostrich)     Darwin (osx1010test)
  Updated RELEASE.txt Description:     - Wrappers for H5Lcreate_soft, H5Lcreate_hard, H5Lcopy, H5Lmove,       H5Ldelete, and H5Lget_info     - Class LinkCreatPropList     - Fixed typo in source file Platforms tested:     Linux/64 (jelly)
  Updated for H5LcreatProp.[h,cpp]
  Updated MANIFEST for H5LcreatProp.[h,cpp]
  HDFFV-10149 continued Description:     - Moved the new wrappers committed on Mar 9:         43158f3bb352f374c31556a5d0dc463a09e0b32e       to H5Location and renamed some of them for overloading.       This is because the loc_id in the C APIs can be file, group, dataset,       named datatype, and attribute.  Previous implementation was wrong       following some inaccurate C API reference manual.
  Re-factor coding for H5P/Sencode with libver bounds.
  Removed commented out code from H5FDmpio.c, H5FDprivate.h and H5Fint.c
  Upated cpp doc.
  Added C++ wrappers - HDFFV-10149 Description:     Added the following wrappers to class H5::Group:     + H5Lcreate_soft:         // Creates a soft link from link_name to target_name.         void newLink(const char *target_name, const char *link_name,...)         void newLink(const H5std_string& target_name,...)
  Improve code Description:     Added notes and changed argument to H5Fcreate to clarify the     latest situation Platforms tested:     Linux/64 (jelly)
  Resolve compilation errors.
  Add release note
  Remove obsolete comments
  Change CMake min to 3.10
  ...

1 files changed, 146 insertions, 1 deletions

diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt
index c62e8d9..da46821 100644
--- a/release_docs/RELEASE.txt
+++ b/release_docs/RELEASE.txt
@@ -56,6 +56,26 @@ New Features
     -------------
     - CMake
 
+      Change minimum version to 3.10.
+
+      This change removes the need to support a copy of the FindMPI.cmake module,
+      which has been removed, along with its subfolder in the config/cmake_ext_mod
+      location.
+
+      (ADB - 2018/03/09)
+
+    - CMake
+
+      Add pkg-config file generation
+
+      Added pkg-config file generation for the C, C++, HL, and HL C++ libraries.
+      In addition, builds on linux will create h5cXXX scripts that use the pkg-config
+      files. This is a limited implementation of a script like autotools h5cc.
+
+      (ADB - 2018/03/08, HDFFV-4359)
+
+    - CMake
+
       Refactor use of CMAKE_BUILD_TYPE for new variable, which understands
       the type of generator in use.
 
@@ -204,7 +224,63 @@ New Features
 
     C++ Library:
     ------------
-    -
+    - The following wrappers are added:
+
+      + H5Lcreate_soft:
+        // Creates a soft link from link_name to target_name.
+        void link(const char *target_name, const char *link_name,...)
+        void link(const H5std_string& target_name,...)
+
+      + H5Lcreate_hard:
+        // Creates a hard link from new_name to curr_name.
+        void link(const char *curr_name, const Group& new_loc,...)
+        void link(const H5std_string& curr_name, const Group& new_loc,...)
+
+        // Creates a hard link from new_name to curr_name in same location.
+        void link(const char *curr_name, const hid_t same_loc,...)
+        void link(const H5std_string& curr_name, const hid_t same_loc,...)
+
+        Note: previous version of H5Location::link will be deprecated.
+
+      + H5Lcopy:
+        // Copy an object from a group of file to another.
+        void copyLink(const char *src_name, const Group& dst,...)
+        void copyLink(const H5std_string& src_name, const Group& dst,...)
+
+        // Copy an object from a group of file to the same location.
+        void copyLink(const char *src_name, const char *dst_name,...)
+        void copyLink(const H5std_string& src_name,...)
+
+      + H5Lmove:
+        // Rename an object in a group or file to a new location.
+        void moveLink(const char* src_name, const Group& dst,...)
+        void moveLink(const H5std_string& src_name, const Group& dst,...)
+
+        // Rename an object in a group or file to the same location.
+        void moveLink(const char* src_name, const char* dst_name,...)
+        void moveLink(const H5std_string& src_name,...)
+
+        Note: previous version H5Location::move will be deprecated.
+
+      + H5Ldelete:
+        // Removes the specified link from this location.
+        void unlink(const char *link_name,
+            const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
+        void unlink(const H5std_string& link_name,
+            const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
+
+    - Added class LinkCreatPropList
+
+    - Added overloaded functions H5Location::createGroup to take a link
+      creation property list
+        Group createGroup(const char* name, const LinkCreatPropList& lcpl)
+        Group createGroup(const H5std_string& name, const LinkCreatPropList& lcpl)
+    - Added wrapper for H5Lget_info() to H5Location
+        // Returns the information of the named link.
+        H5L_info_t getLinkInfo(const H5std_string& link_name,...)
+
+      (BMR - 2018/03/11, HDFFV-10149)
+
 
     Java Library:
     ----------------
@@ -298,6 +374,18 @@ Bug Fixes since HDF5-1.10.1 release
 
       (VC - 2017/11/28, HDFFV-9947)
 
+    - H5Pset_evict_on_close in H5Pfapl.c
+
+      Changed the minor error number from H5E_CANTSET to H5E_UNSUPPORTED for
+      parallel library.
+             (ADB - 2018/03/6, HDFFV-10414)
+
+    - Utility function can not handle lowercase Windows drive letters
+
+      Added call to toupper function for drive letter.
+
+      (ADB - 2017/12/18, HDFFV-10307)
+
     - filter plugin handling in H5PL.c and H5Z.c
 
       It was discovered that the dynamic loading process used by
@@ -409,6 +497,63 @@ Bug Fixes since HDF5-1.10.1 release
 
       (RAW - 2017/12/01, HDFFV-10272)
 
+    - If an HDF5 file contains a filter pipeline message with a 'number of
+      filters' field that exceeds the maximum number of allowed filters,
+      the error handling code will attempt to dereference a NULL pointer.
+
+      This issue was reported to The HDF Group as issue #CVE-2017-17505.
+
+      NOTE: The HDF5 C library cannot produce such a file. This condition
+            should only occur in a corrupt (or deliberately altered) file
+            or a file created by third-party software.
+
+      This problem arose because the error handling code assumed that
+      the 'number of filters' field implied that a dynamic array of that
+      size had already been created and that the cleanup code should
+      iterate over that array and clean up each element's resources. If
+      an error occurred before the array has been allocated, this will
+      not be true.
+
+      This has been changed so that the number of filters is set to
+      zero on errors. Additionally, the filter array traversal in the
+      error handling code now requires that the filter array not be NULL.
+
+      (DER - 2018/02/06, HDFFV-10354)
+
+    - If an HDF5 file contains a filter pipeline message which contains
+      a 'number of filters' field that exceeds the actual number of
+      filters in the message, the HDF5 C library will read off the end of
+      the read buffer.
+
+      This issue was reported to The HDF Group as issue #CVE-2017-17506.
+
+      NOTE: The HDF5 C library cannot produce such a file. This condition
+            should only occur in a corrupt (or deliberately altered) file
+            or a file created by third-party software.
+
+      The problem was fixed by passing the buffer size with the buffer
+      and ensuring that the pointer cannot be incremented off the end
+      of the buffer. A mismatch between the number of filters declared
+      and the actual number of filters will now invoke normal HDF5
+      error handling.
+
+      (DER - 2018/02/26, HDFFV-10355)
+
+    - If an HDF5 file contains a malformed compound type which contains
+      a member of size zero, a division by zero error will occur while
+      processing the type.
+
+      This issue was reported to The HDF Group as issue #CVE-2017-17508.
+
+      NOTE: The HDF5 C library cannot produce such a file. This condition
+            should only occur in a corrupt (or deliberately altered) file
+            or a file created by third-party software.
+
+      Checking for zero before dividing fixes the problem. Instead of the
+      division by zero, the normal HDF5 error handling is invoked.
+
+      (DER - 2018/02/26, HDFFV-10357)
+
     Configuration
     -------------
     - CMake