Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol

1 files changed, 94 insertions, 51 deletions

diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index a98fdb6..987ae1b 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -32,7 +32,6 @@ set (H5A_SOURCES
 )
 
 set (H5A_HDRS
-    ${HDF5_SRC_DIR}/H5Apkg.h
     ${HDF5_SRC_DIR}/H5Apublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5A" "${H5A_HDRS}" "${H5A_SOURCES}" )
@@ -46,7 +45,6 @@ set (H5AC_SOURCES
 )
 
 set (H5AC_HDRS
-    ${HDF5_SRC_DIR}/H5ACpkg.h
     ${HDF5_SRC_DIR}/H5ACpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5AC" "${H5AC_HDRS}" "${H5AC_SOURCES}" )
@@ -57,8 +55,6 @@ set (H5B_SOURCES
     ${HDF5_SRC_DIR}/H5Bdbg.c
 )
 set (H5B_HDRS
-    ${HDF5_SRC_DIR}/H5Bpkg.h
-    ${HDF5_SRC_DIR}/H5Bpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5B" "${H5B_HDRS}" "${H5B_SOURCES}" )
 
@@ -75,8 +71,6 @@ set (H5B2_SOURCES
     ${HDF5_SRC_DIR}/H5B2test.c
 )
 set (H5B2_HDRS
-    ${HDF5_SRC_DIR}/H5B2pkg.h
-    ${HDF5_SRC_DIR}/H5B2public.h
 )
 IDE_GENERATED_PROPERTIES ("H5B2" "${H5B2_HDRS}" "${H5B2_SOURCES}" )
 
@@ -94,7 +88,6 @@ set (H5C_SOURCES
     ${HDF5_SRC_DIR}/H5Ctest.c
 )
 set (H5C_HDRS
-    ${HDF5_SRC_DIR}/H5Cpkg.h
     ${HDF5_SRC_DIR}/H5Cpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5C" "${H5C_HDRS}" "${H5C_SOURCES}" )
@@ -143,7 +136,6 @@ set (H5D_SOURCES
 )
 
 set (H5D_HDRS
-    ${HDF5_SRC_DIR}/H5Dpkg.h
     ${HDF5_SRC_DIR}/H5Dpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5D" "${H5D_HDRS}" "${H5D_SOURCES}" )
@@ -155,12 +147,8 @@ set (H5E_SOURCES
 )
 
 set (H5E_HDRS
-    #${HDF5_SRC_DIR}/H5Edefin.h
-    #${HDF5_SRC_DIR}/H5Einit.h
-    ${HDF5_SRC_DIR}/H5Epkg.h
-    #${HDF5_SRC_DIR}/H5Epubgen.h
+    ${HDF5_SRC_DIR}/H5Epubgen.h
     ${HDF5_SRC_DIR}/H5Epublic.h
-    #${HDF5_SRC_DIR}/H5Eterm.h
 )
 IDE_GENERATED_PROPERTIES ("H5E" "${H5E_HDRS}" "${H5E_SOURCES}" )
 
@@ -179,7 +167,6 @@ set (H5EA_SOURCES
     ${HDF5_SRC_DIR}/H5EAtest.c
 )
 set (H5EA_HDRS
-    ${HDF5_SRC_DIR}/H5EApkg.h
 )
 IDE_GENERATED_PROPERTIES ("H5EA" "${H5EA_HDRS}" "${H5EA_SOURCES}" )
 
@@ -213,7 +200,6 @@ set (H5F_SOURCES
 )
 
 set (H5F_HDRS
-    ${HDF5_SRC_DIR}/H5Fpkg.h
     ${HDF5_SRC_DIR}/H5Fpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5F" "${H5F_HDRS}" "${H5F_SOURCES}" )
@@ -231,7 +217,6 @@ set (H5FA_SOURCES
     ${HDF5_SRC_DIR}/H5FAtest.c
 )
 set (H5FA_HDRS
-    ${HDF5_SRC_DIR}/H5FApkg.h
 )
 IDE_GENERATED_PROPERTIES ("H5FA" "${H5FA_HDRS}" "${H5FA_SOURCES}" )
 
@@ -261,7 +246,6 @@ set (H5FD_HDRS
     ${HDF5_SRC_DIR}/H5FDmpi.h
     ${HDF5_SRC_DIR}/H5FDmpio.h
     ${HDF5_SRC_DIR}/H5FDmulti.h
-    ${HDF5_SRC_DIR}/H5FDpkg.h
     ${HDF5_SRC_DIR}/H5FDpublic.h
     ${HDF5_SRC_DIR}/H5FDsec2.h
     ${HDF5_SRC_DIR}/H5FDstdio.h
@@ -297,8 +281,6 @@ set (H5FS_SOURCES
 )
 
 set (H5FS_HDRS
-    ${HDF5_SRC_DIR}/H5FSpkg.h
-    ${HDF5_SRC_DIR}/H5FSpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5FS" "${H5FS_HDRS}" "${H5FS_SOURCES}" )
 
@@ -324,7 +306,6 @@ set (H5G_SOURCES
 )
 
 set (H5G_HDRS
-    ${HDF5_SRC_DIR}/H5Gpkg.h
     ${HDF5_SRC_DIR}/H5Gpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5G" "${H5G_HDRS}" "${H5G_SOURCES}" )
@@ -349,8 +330,6 @@ set (H5HF_SOURCES
 )
 
 set (H5HF_HDRS
-    ${HDF5_SRC_DIR}/H5HFpkg.h
-    ${HDF5_SRC_DIR}/H5HFpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5HF" "${H5HF_HDRS}" "${H5HF_SOURCES}" )
 
@@ -362,8 +341,6 @@ set (H5HG_SOURCES
 )
 
 set (H5HG_HDRS
-    ${HDF5_SRC_DIR}/H5HGpkg.h
-    ${HDF5_SRC_DIR}/H5HGpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5HG" "${H5HG_HDRS}" "${H5HG_SOURCES}" )
 
@@ -377,8 +354,6 @@ set (H5HL_SOURCES
 )
 
 set (H5HL_HDRS
-    ${HDF5_SRC_DIR}/H5HLpkg.h
-    ${HDF5_SRC_DIR}/H5HLpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5HL" "${H5HL_HDRS}" "${H5HL_SOURCES}" )
 
@@ -396,7 +371,6 @@ set (H5I_SOURCES
     ${HDF5_SRC_DIR}/H5Itest.c
 )
 set (H5I_HDRS
-    ${HDF5_SRC_DIR}/H5Ipkg.h
     ${HDF5_SRC_DIR}/H5Ipublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5I" "${H5I_HDRS}" "${H5I_SOURCES}" )
@@ -407,7 +381,6 @@ set (H5L_SOURCES
     ${HDF5_SRC_DIR}/H5Lexternal.c
 )
 set (H5L_HDRS
-    ${HDF5_SRC_DIR}/H5Lpkg.h
     ${HDF5_SRC_DIR}/H5Lpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5L" "${H5L_HDRS}" "${H5L_SOURCES}" )
@@ -440,7 +413,6 @@ set (H5MP_SOURCES
 )
 
 set (H5MP_HDRS
-    ${HDF5_SRC_DIR}/H5MPpkg.h
 )
 IDE_GENERATED_PROPERTIES ("H5MP" "${H5MP_HDRS}" "${H5MP_SOURCES}" )
 
@@ -485,9 +457,7 @@ set (H5O_SOURCES
 )
 
 set (H5O_HDRS
-    ${HDF5_SRC_DIR}/H5Opkg.h
     ${HDF5_SRC_DIR}/H5Opublic.h
-    ${HDF5_SRC_DIR}/H5Oshared.h
 )
 IDE_GENERATED_PROPERTIES ("H5O" "${H5O_HDRS}" "${H5O_SOURCES}" )
 
@@ -513,7 +483,6 @@ set (H5P_SOURCES
 )
 
 set (H5P_HDRS
-    ${HDF5_SRC_DIR}/H5Ppkg.h
     ${HDF5_SRC_DIR}/H5Ppublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5P" "${H5P_HDRS}" "${H5P_SOURCES}" )
@@ -523,7 +492,6 @@ set (H5PB_SOURCES
 )
 
 set (H5PB_HDRS
-    ${HDF5_SRC_DIR}/H5PBpkg.h
 )
 IDE_GENERATED_PROPERTIES ("H5PB" "${H5PB_HDRS}" "${H5PB_SOURCES}" )
 
@@ -536,7 +504,6 @@ set (H5PL_SOURCES
 
 set (H5PL_HDRS
     ${HDF5_SRC_DIR}/H5PLextern.h
-    ${HDF5_SRC_DIR}/H5PLpkg.h
     ${HDF5_SRC_DIR}/H5PLpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5PL" "${H5PL_HDRS}" "${H5PL_SOURCES}" )
@@ -548,7 +515,6 @@ set (H5R_SOURCES
     ${HDF5_SRC_DIR}/H5Rint.c
 )
 set (H5R_HDRS
-    ${HDF5_SRC_DIR}/H5Rpkg.h
     ${HDF5_SRC_DIR}/H5Rpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5R" "${H5R_HDRS}" "${H5R_SOURCES}" )
@@ -575,7 +541,6 @@ set (H5S_SOURCES
 )
 
 set (H5S_HDRS
-    ${HDF5_SRC_DIR}/H5Spkg.h
     ${HDF5_SRC_DIR}/H5Spublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5S" "${H5S_HDRS}" "${H5S_SOURCES}" )
@@ -598,7 +563,6 @@ set (H5SM_SOURCES
 )
 
 set (H5SM_HDRS
-    ${HDF5_SRC_DIR}/H5SMpkg.h
 )
 IDE_GENERATED_PROPERTIES ("H5SM" "${H5SM_HDRS}" "${H5SM_SOURCES}" )
 
@@ -638,7 +602,6 @@ set (H5T_SOURCES
 )
 
 set (H5T_HDRS
-    ${HDF5_SRC_DIR}/H5Tpkg.h
     ${HDF5_SRC_DIR}/H5Tpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5T" "${H5T_HDRS}" "${H5T_SOURCES}" )
@@ -667,7 +630,6 @@ set (H5VL_SOURCES
     ${HDF5_SRC_DIR}/H5VLnative.c
 )
 set (H5VL_HDRS
-    ${HDF5_SRC_DIR}/H5VLpkg.h
     ${HDF5_SRC_DIR}/H5VLnative.h
     ${HDF5_SRC_DIR}/H5VLpublic.h
 )
@@ -706,7 +668,6 @@ endif ()
 
 
 set (H5Z_HDRS
-    ${HDF5_SRC_DIR}/H5Zpkg.h
     ${HDF5_SRC_DIR}/H5Zpublic.h
 )
 IDE_GENERATED_PROPERTIES ("H5Z" "${H5Z_HDRS}" "${H5Z_SOURCES}" )
@@ -796,51 +757,127 @@ set (H5_PUBLIC_HEADERS
 
 set (H5_PRIVATE_HEADERS
     ${HDF5_SRC_DIR}/H5private.h
+
+    ${HDF5_SRC_DIR}/H5Apkg.h
     ${HDF5_SRC_DIR}/H5Aprivate.h
+
+    ${HDF5_SRC_DIR}/H5ACpkg.h
     ${HDF5_SRC_DIR}/H5ACprivate.h
-    ${HDF5_SRC_DIR}/H5B2private.h
+
+    ${HDF5_SRC_DIR}/H5Bpkg.h
     ${HDF5_SRC_DIR}/H5Bprivate.h
+
+    ${HDF5_SRC_DIR}/H5B2pkg.h
+    ${HDF5_SRC_DIR}/H5B2private.h
+
+    ${HDF5_SRC_DIR}/H5Cpkg.h
     ${HDF5_SRC_DIR}/H5Cprivate.h
+
     ${HDF5_SRC_DIR}/H5CSprivate.h
+
     ${HDF5_SRC_DIR}/H5CXprivate.h
+
+    ${HDF5_SRC_DIR}/H5Dpkg.h
     ${HDF5_SRC_DIR}/H5Dprivate.h
+
+    ${HDF5_SRC_DIR}/H5Edefin.h
+    ${HDF5_SRC_DIR}/H5Einit.h
+    ${HDF5_SRC_DIR}/H5Epkg.h
     ${HDF5_SRC_DIR}/H5Eprivate.h
+    ${HDF5_SRC_DIR}/H5Eterm.h
+
+    ${HDF5_SRC_DIR}/H5EApkg.h
     ${HDF5_SRC_DIR}/H5EAprivate.h
+
+    ${HDF5_SRC_DIR}/H5Fpkg.h
+    ${HDF5_SRC_DIR}/H5Fprivate.h
+
+    ${HDF5_SRC_DIR}/H5FApkg.h
     ${HDF5_SRC_DIR}/H5FAprivate.h
+
+    ${HDF5_SRC_DIR}/H5FDpkg.h
     ${HDF5_SRC_DIR}/H5FDprivate.h
-    ${HDF5_SRC_DIR}/H5Fprivate.h
+
     ${HDF5_SRC_DIR}/H5FLprivate.h
+
     ${HDF5_SRC_DIR}/H5FOprivate.h
-    ${HDF5_SRC_DIR}/H5MFprivate.h
-    ${HDF5_SRC_DIR}/H5MMprivate.h
-    ${HDF5_SRC_DIR}/H5Cprivate.h
+
+    ${HDF5_SRC_DIR}/H5FSpkg.h
     ${HDF5_SRC_DIR}/H5FSprivate.h
+
+    ${HDF5_SRC_DIR}/H5Gpkg.h
     ${HDF5_SRC_DIR}/H5Gprivate.h
+
+    ${HDF5_SRC_DIR}/H5HFpkg.h
     ${HDF5_SRC_DIR}/H5HFprivate.h
+
+    ${HDF5_SRC_DIR}/H5HGpkg.h
     ${HDF5_SRC_DIR}/H5HGprivate.h
+
+    ${HDF5_SRC_DIR}/H5HLpkg.h
     ${HDF5_SRC_DIR}/H5HLprivate.h
+
     ${HDF5_SRC_DIR}/H5HPprivate.h
+
+    ${HDF5_SRC_DIR}/H5Ipkg.h
     ${HDF5_SRC_DIR}/H5Iprivate.h
+
+    ${HDF5_SRC_DIR}/H5Lpkg.h
     ${HDF5_SRC_DIR}/H5Lprivate.h
+
+    ${HDF5_SRC_DIR}/H5MFprivate.h
+
+    ${HDF5_SRC_DIR}/H5MMprivate.h
+
+    ${HDF5_SRC_DIR}/H5MPpkg.h
     ${HDF5_SRC_DIR}/H5MPprivate.h
+
+    ${HDF5_SRC_DIR}/H5Opkg.h
     ${HDF5_SRC_DIR}/H5Oprivate.h
+    ${HDF5_SRC_DIR}/H5Oshared.h
+
+    ${HDF5_SRC_DIR}/H5Ppkg.h
     ${HDF5_SRC_DIR}/H5Pprivate.h
+
     ${HDF5_SRC_DIR}/H5PBprivate.h
+    ${HDF5_SRC_DIR}/H5PBpkg.h
+
+    ${HDF5_SRC_DIR}/H5PLpkg.h
     ${HDF5_SRC_DIR}/H5PLprivate.h
-    ${HDF5_SRC_DIR}/H5UCprivate.h
+
+    ${HDF5_SRC_DIR}/H5Rpkg.h
     ${HDF5_SRC_DIR}/H5Rprivate.h
+
     ${HDF5_SRC_DIR}/H5RSprivate.h
+
+    ${HDF5_SRC_DIR}/H5Spkg.h
+    ${HDF5_SRC_DIR}/H5Sprivate.h
+
     ${HDF5_SRC_DIR}/H5SLprivate.h
+
+    ${HDF5_SRC_DIR}/H5SMpkg.h
     ${HDF5_SRC_DIR}/H5SMprivate.h
-    ${HDF5_SRC_DIR}/H5Sprivate.h
+
     ${HDF5_SRC_DIR}/H5STprivate.h
+
+    ${HDF5_SRC_DIR}/H5Tpkg.h
     ${HDF5_SRC_DIR}/H5Tprivate.h
+
     ${HDF5_SRC_DIR}/H5TSprivate.h
+
+    ${HDF5_SRC_DIR}/H5UCprivate.h
+
+    ${HDF5_SRC_DIR}/H5VLpkg.h
     ${HDF5_SRC_DIR}/H5VLnative_private.h
     ${HDF5_SRC_DIR}/H5VLprivate.h
+
     ${HDF5_SRC_DIR}/H5VMprivate.h
+
     ${HDF5_SRC_DIR}/H5WBprivate.h
+
+    ${HDF5_SRC_DIR}/H5Zpkg.h
     ${HDF5_SRC_DIR}/H5Zprivate.h
+
     ${HDF5_SRC_DIR}/H5win32defs.h
 )
 
@@ -853,6 +890,12 @@ set (H5_GENERATED_HEADERS
     ${HDF5_SRC_DIR}/H5overflow.h
 )
 
+set (H5_PUBLIC_GENERATED_HEADERS
+    ${HDF5_SRC_DIR}/H5Epubgen.h
+    ${HDF5_SRC_DIR}/H5version.h
+    ${HDF5_SRC_DIR}/H5overflow.h
+)
+
 option (HDF5_GENERATE_HEADERS "Rebuild Generated Files" ON)
 if (HDF5_GENERATE_HEADERS)
   set_source_files_properties(${H5_GENERATED_HEADERS} PROPERTIES GENERATED TRUE)
@@ -901,13 +944,13 @@ if (NOT EXISTS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c)
 
   if (HDF5_BATCH_H5DETECT)
     configure_file (
-        ${HDF5_SOURCE_DIR}/bin/batch/${HDF5_DETECT_BATCH_SCRIPT}.in
-        ${HDF5_BINARY_DIR}/${HDF5_DETECT_BATCH_SCRIPT} ESCAPE_QUOTES @ONLY
+        ${HDF5_SOURCE_DIR}/bin/batch/${HDF5_BATCH_H5DETECT_SCRIPT}.in.cmake
+        ${HDF5_BINARY_DIR}/${HDF5_BATCH_H5DETECT_SCRIPT} ESCAPE_QUOTES @ONLY
     )
     add_custom_command (
         OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
         COMMAND ${HDF5_BATCH_CMD}
-        ARGS ${HDF5_BATCH_H5DETECT_SCRIPT}
+        ARGS ${HDF5_BINARY_DIR}/${HDF5_BATCH_H5DETECT_SCRIPT}
         DEPENDS H5detect
         WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR}
     )
@@ -1055,7 +1098,7 @@ if (NOT HDF5_INSTALL_NO_DEVELOPMENT)
   install (
       FILES
           ${H5_PUBLIC_HEADERS}
-          ${H5_GENERATED_HEADERS}
+          ${H5_PUBLIC_GENERATED_HEADERS}
           ${HDF5_BINARY_DIR}/H5pubconf.h
       DESTINATION
           ${HDF5_INSTALL_INCLUDE_DIR}