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authorQuincey Koziol <koziol@hdfgroup.org>2006-02-24 13:45:02 (GMT)
committerQuincey Koziol <koziol@hdfgroup.org>2006-02-24 13:45:02 (GMT)
commitb2d288804d3f17e824383436d038976c159d0eda (patch)
treec8d45d3cb55a2bf2cdbf9587157c4bcda8697706 /src/H5BP.c
parent89629922985edbd558ddf036fbfbbaf29876668a (diff)
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[svn-r11965] Purpose:
Maintenance Description: Remove half-built (half-baked? :-) implementation of B+tree, block tracker and segmented heaps. (In preparation for starting the new heap coding) Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping)
Diffstat (limited to 'src/H5BP.c')
-rw-r--r--src/H5BP.c471
1 files changed, 0 insertions, 471 deletions
diff --git a/src/H5BP.c b/src/H5BP.c
deleted file mode 100644
index e01ab28..0000000
--- a/src/H5BP.c
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@@ -1,471 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by the Board of Trustees of the University of Illinois. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the files COPYING and Copyright.html. COPYING can be found at the root *
- * of the source code distribution tree; Copyright.html can be found at the *
- * root level of an installed copy of the electronic HDF5 document set and *
- * is linked from the top-level documents page. It can also be found at *
- * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
- * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-/*-------------------------------------------------------------------------
- *
- * Created: H5BP.c
- * Apr 14 2005
- * Quincey Koziol <koziol@ncsa.uiuc.edu>
- *
- * Purpose: Implements a B+ tree, with several modifications from
- * the "standard" methods.
- *
- * Please see the documentation in:
- * doc/html/TechNotes/Btrees.html for a full description
- * of how they work, etc.
- *
- *-------------------------------------------------------------------------
- */
-
-#define H5BP_PACKAGE /*suppress error about including H5BPpkg */
-
-/* Private headers */
-#include "H5private.h" /* Generic Functions */
-#include "H5BPpkg.h" /* B+ trees */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5MFprivate.h" /* File memory management */
-#include "H5MMprivate.h" /* Memory management */
-
-/* Local macros */
-
-/* Uncomment this macro to enable extra sanity checking */
-/* #define H5BP_DEBUG */
-
-
-/* Local typedefs */
-
-/* Local prototypes */
-
-/* Helper functions */
-
-
-/* Package variables */
-
-/* Declare a free list to manage the H5BP_t struct */
-H5FL_DEFINE(H5BP_t);
-
-/* Declare a free list to manage the H5BP_branch_t struct */
-H5FL_DEFINE(H5BP_branch_t);
-
-/* Declare a free list to manage the H5BP_twig_t struct */
-H5FL_DEFINE(H5BP_twig_t);
-
-/* Declare a free list to manage the H5BP_leaf_t struct */
-H5FL_DEFINE(H5BP_leaf_t);
-
-
-/* Static variables */
-
-/* Declare a free list to manage B-tree node pages to/from disk */
-H5FL_BLK_DEFINE_STATIC(node_page);
-
-/* Declare a free list to manage the H5BP_shared_t struct */
-H5FL_DEFINE_STATIC(H5BP_shared_t);
-
-
-
-/*-------------------------------------------------------------------------
- * Function: H5BP_shared_init
- *
- * Purpose: Allocate & initialize shared B-tree info
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Quincey Koziol
- * koziol@ncsa.uiuc.edu
- * Apr 14 2005
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5BP_shared_init (H5BP_t *bpt, const H5BP_class_t *type,
- size_t node_size, unsigned split_percent, unsigned merge_percent)
-{
- H5BP_shared_t *shared = NULL; /* Shared B+ tree information */
- herr_t ret_value=SUCCEED; /* Return value */
-
- FUNC_ENTER_NOAPI_NOINIT(H5BP_shared_init)
-
- /* Allocate space for the shared information */
- if(NULL==(shared = H5FL_CALLOC(H5BP_shared_t)))
- HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for B+ tree shared information")
-
- /* Assign user's information */
- shared->split_percent = split_percent;
- shared->merge_percent = merge_percent;
- shared->node_size = node_size;
-
- /* Assign common type information */
- shared->type = type;
-
- /* Allocate "page" for node I/O */
- if((shared->page=H5FL_BLK_MALLOC(node_page,shared->node_size))==NULL)
- HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
-#ifdef H5_USING_PURIFY
-HDmemset(shared->page,0,shared->node_size);
-#endif /* H5_USING_PURIFY */
-
- /* Make shared B-tree info reference counted */
- if(NULL==(bpt->shared=H5RC_create(shared,H5BP_shared_free)))
- HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't create ref-count wrapper for shared B+ tree info")
-
-done:
- if(ret_value<0)
- if(shared)
- H5BP_shared_free(shared);
-
- FUNC_LEAVE_NOAPI(ret_value)
-} /* end H5BP_shared_init() */
-
-
-/*-------------------------------------------------------------------------
- * Function: H5BP_shared_free
- *
- * Purpose: Free shared B+ tree info
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Quincey Koziol
- * koziol@ncsa.uiuc.edu
- * Apr 14 2005
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5BP_shared_free (void *_shared)
-{
- H5BP_shared_t *shared = (H5BP_shared_t *)_shared;
- herr_t ret_value=SUCCEED;
-
- FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5BP_shared_free)
-
- /* Sanity check */
- HDassert(shared);
-
- /* Free the B-tree node buffer */
- if(shared->page)
- H5FL_BLK_FREE(node_page,shared->page);
-
- /* Free the shared B-tree info itself */
- H5FL_FREE(H5BP_shared_t,shared);
-
- FUNC_LEAVE_NOAPI(ret_value)
-} /* end H5BP_shared_free() */
-
-
-/*-------------------------------------------------------------------------
- * Function: H5BP_create
- *
- * Purpose: Creates a new empty B+ tree in the file.
- *
- * Return: Non-negative on success (with address of new B-tree
- * filled in), negative on failure
- *
- * Programmer: Quincey Koziol
- * koziol@ncsa.uiuc.edu
- * Apr 19 2005
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5BP_create(H5F_t *f, hid_t dxpl_id, const H5BP_class_t *type,
- size_t node_size, unsigned split_percent, unsigned merge_percent,
- haddr_t *addr_p)
-{
- H5BP_t *bpt = NULL; /* The new B+ tree header information */
- herr_t ret_value=SUCCEED;
-
- FUNC_ENTER_NOAPI(H5BP_create, FAIL)
-
- /*
- * Check arguments.
- */
- HDassert(f);
- HDassert(type);
- HDassert(node_size>0);
- HDassert(merge_percent>0 && merge_percent<=100);
- HDassert(split_percent>0 && split_percent<=100);
- HDassert(merge_percent<(split_percent/2));
-
- /*
- * Allocate file and memory data structures.
- */
- if (NULL==(bpt = H5FL_MALLOC(H5BP_t)))
- HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for B-tree header")
-
- /* Assign internal information */
- HDmemset(&bpt->cache_info,0,sizeof(H5AC_info_t));
- bpt->cache_info.is_dirty = TRUE;
- bpt->depth = 0;
- bpt->root.addr = HADDR_UNDEF;
- bpt->root.all_nrec = 0;
- bpt->root.util = 0;
-
- /* Initialize shared B-tree info */
- if(H5BP_shared_init(bpt, type, node_size, split_percent, merge_percent)<0)
- HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't create shared B+ tree info")
-
- /* Allocate space for the header on disk */
- if (HADDR_UNDEF==(*addr_p=H5MF_alloc(f, H5FD_MEM_BTREE, dxpl_id, (hsize_t)H5BP_HEADER_SIZE(f))))
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "file allocation failed for B-tree header")
-
- /* Cache the new B-tree node */
- if (H5AC_set(f, dxpl_id, H5AC_BPT_HDR, *addr_p, bpt, H5AC__NO_FLAGS_SET) < 0)
- HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, FAIL, "can't add B+ tree header to cache")
-
-done:
- if (ret_value<0) {
- if (bpt)
- (void)H5BP_cache_hdr_dest(f,bpt);
- } /* end if */
-
- FUNC_LEAVE_NOAPI(ret_value)
-} /* end H5BP_create() */
-
-
-/*-------------------------------------------------------------------------
- * Function: H5BP_create_leaf
- *
- * Purpose: Creates empty leaf node of a B+ tree and updates node pointer
- * to point to it.
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Quincey Koziol
- * koziol@ncsa.uiuc.edu
- * Apr 19 2005
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-H5BP_create_leaf(H5F_t *f, hid_t dxpl_id, H5RC_t *bpt_shared, H5BP_node_ptr_t *node_ptr)
-{
- H5BP_leaf_t *leaf=NULL; /* Pointer to new leaf node created */
- H5BP_shared_t *shared; /* Shared B+ tree information */
- herr_t ret_value = SUCCEED;
-
- FUNC_ENTER_NOAPI(H5BP_create_leaf, FAIL)
-
- /* Check arguments. */
- HDassert(f);
- HDassert(bpt_shared);
- HDassert(node_ptr);
-
- /* Allocate memory for leaf information */
- if (NULL==(leaf = H5FL_MALLOC(H5BP_leaf_t)))
- HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for B+ tree leaf info")
-
- /* Set metadata cache info */
- HDmemset(&leaf->cache_info,0,sizeof(H5AC_info_t));
- leaf->cache_info.is_dirty = TRUE;
-
- /* Share common B+ tree information */
- leaf->shared = bpt_shared;
- H5RC_INC(leaf->shared);
-
- /* Get the pointer to the shared B-tree info */
- shared=H5RC_GET_OBJ(leaf->shared);
- HDassert(shared);
-
- /* Create record pool for leaf node */
- if((leaf->rec_pool = H5MP_create(H5BP_LEAF_POOL_PAGE, H5MP_FLG_DEFAULT)) == NULL)
- HGOTO_ERROR(H5E_BTREE, H5E_NOSPACE, FAIL, "can't allocate memory pool")
-
- /* Set number of records */
- leaf->nrec=0;
- leaf->flags=0;
-
- /* Allocate space on disk for the leaf */
- if (HADDR_UNDEF==(node_ptr->addr=H5MF_alloc(f, H5FD_MEM_BTREE, dxpl_id, (hsize_t)shared->node_size)))
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "file allocation failed for B+ tree leaf node")
-
- /* Cache the new B+ tree node */
- if (H5AC_set(f, dxpl_id, H5AC_BPT_LEAF, node_ptr->addr, leaf, H5AC__NO_FLAGS_SET) < 0)
- HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, FAIL, "can't add B+ tree leaf to cache")
-
-done:
- if (ret_value<0) {
- if (leaf)
- (void)H5BP_cache_leaf_dest(f,leaf);
- } /* end if */
-
- FUNC_LEAVE_NOAPI(ret_value)
-} /* H5BP_create_leaf() */
-
-
-/*-------------------------------------------------------------------------
- * Function: H5BP_insert_leaf
- *
- * Purpose: Adds a new record to a B+ tree leaf node.
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Quincey Koziol
- * koziol@ncsa.uiuc.edu
- * Apr 22 2005
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-H5BP_insert_leaf(H5F_t *f, hid_t dxpl_id, H5RC_t *bpt_shared,
- H5BP_node_ptr_t *curr_node_ptr, void *udata)
-{
- H5BP_leaf_t *leaf; /* Pointer to leaf node */
- H5BP_shared_t *shared; /* Pointer to B+ tree's shared information */
-#ifdef LATER
- int cmp; /* Comparison value of records */
- unsigned idx; /* Location of record which matches key */
-#endif /* LATER */
- herr_t ret_value = SUCCEED;
-
- FUNC_ENTER_NOAPI_NOINIT(H5BP_insert_leaf)
-
- /* Check arguments. */
- HDassert(f);
- HDassert(bpt_shared);
- HDassert(curr_node_ptr);
- HDassert(H5F_addr_defined(curr_node_ptr->addr));
-
-if( H5BP_NODE_OVERSIZE(curr_node_ptr->util)) {
- HDfprintf(stderr,"%s: attempting to insert record into extent node\n",FUNC);
- HGOTO_ERROR(H5E_BTREE, H5E_UNSUPPORTED, FAIL, "Can't handle extent node!")
-}
- /* Lock B+ tree node */
- if (NULL == (leaf = H5AC_protect(f, dxpl_id, H5AC_BPT_LEAF, curr_node_ptr->addr, &(curr_node_ptr->util), bpt_shared, H5AC_WRITE)))
- HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to load B+ tree leaf node")
-
- /* Get the pointer to the shared B+ tree info */
- shared=H5RC_GET_OBJ(bpt_shared);
- HDassert(shared);
-
-#ifndef LATER
-HDfprintf(stderr,"%s: finish record insertion code\n",FUNC);
-HGOTO_ERROR(H5E_BTREE, H5E_UNSUPPORTED, FAIL, "Can't handle record insertion!")
-#else /* LATER */
- /* Check for inserting into empty leaf */
- if(leaf->nrec==0)
- idx=0;
- else {
- /* Find correct location to insert this record */
- if((cmp = H5BP_locate_record(shared->type,leaf->nrec,shared->nat_off,leaf->leaf_native,udata,&idx)) == 0)
- HGOTO_ERROR(H5E_BTREE, H5E_EXISTS, FAIL, "record is already in B+ tree")
- if(cmp > 0)
- idx++;
-
- /* Make room for new record */
- if(idx<leaf->nrec)
- HDmemmove(H5BP_LEAF_NREC(leaf,shared,idx+1),H5BP_LEAF_NREC(leaf,shared,idx),shared->type->nrec_size*(leaf->nrec-idx));
- } /* end else */
-
- /* Make callback to store record in native form */
- if((shared->type->store)(H5BP_LEAF_NREC(leaf,shared,idx),udata)<0)
- HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, FAIL, "unable to insert record into leaf node")
-#endif /* LATER */
-
- /* Update record count for node pointer to current node */
- curr_node_ptr->all_nrec++;
-
- /* Update record count for current node */
- leaf->nrec++;
-
-done:
- /* Release the B+ tree leaf node */
- if (leaf && H5AC_unprotect(f, dxpl_id, H5AC_BPT_LEAF, curr_node_ptr->addr, leaf, H5AC__DIRTIED_FLAG) < 0)
- HDONE_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, FAIL, "unable to release leaf B+ tree node")
-
- FUNC_LEAVE_NOAPI(ret_value)
-} /* H5BP_insert_leaf() */
-
-
-/*-------------------------------------------------------------------------
- * Function: H5BP_insert
- *
- * Purpose: Adds a new record to the B+ tree.
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Quincey Koziol
- * koziol@ncsa.uiuc.edu
- * Apr 19 2005
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5BP_insert(H5F_t *f, hid_t dxpl_id, const H5BP_class_t *type, haddr_t addr,
- void *udata)
-{
- H5BP_t *bpt=NULL; /* Pointer to the B+ tree header */
- H5BP_shared_t *shared; /* Pointer to B+ tree's shared information */
- herr_t ret_value = SUCCEED;
-
- FUNC_ENTER_NOAPI(H5BP_insert, FAIL)
-
- /* Check arguments. */
- HDassert(f);
- HDassert(type);
- HDassert(H5F_addr_defined(addr));
-
- /* Look up the B+ tree header */
- if (NULL == (bpt = H5AC_protect(f, dxpl_id, H5AC_BPT_HDR, addr, type, NULL, H5AC_WRITE)))
- HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to load B+ tree header")
-
- /* Get the pointer to the shared B+ tree info */
- shared=H5RC_GET_OBJ(bpt->shared);
- HDassert(shared);
-
- /* Check if the root node is allocated yet */
- if(!H5F_addr_defined(bpt->root.addr)) {
- /* Create root node as leaf node in B+ tree */
- if(H5BP_create_leaf(f, dxpl_id, bpt->shared, &(bpt->root))<0)
- HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, FAIL, "unable to create root node")
-
- /* Mark B+ tree header as dirty, since we updated the address of the root node */
- bpt->cache_info.is_dirty = TRUE;
- } /* end if */
- /* Check if we need to split the root node (equiv. to a 1->2 leaf node split) */
- else if(H5BP_NODE_OVERSIZE(bpt->root.util) ||
- (!H5BP_NODE_OVERSIZE(bpt->root.util) && bpt->root.util>=shared->split_percent)) {
- /* Split root node */
-#ifdef LATER
- if(H5BP_split_root(f, dxpl_id, bpt, bpt->shared)<0)
- HGOTO_ERROR(H5E_BTREE, H5E_CANTSPLIT, FAIL, "unable to split root node")
-#else /* LATER */
-HDfprintf(stderr,"%s: attempting to split root node\n",FUNC);
-HGOTO_ERROR(H5E_BTREE, H5E_UNSUPPORTED, FAIL, "Can't split root yet!")
-#endif /* LATER */
- } /* end if */
-
- /* Attempt to insert record into B+ tree */
- if(bpt->depth>0) {
-#ifdef LATER
- if(H5BP_insert_internal(f,dxpl_id,bpt->shared,bpt->depth,&(bpt->cache_info),&bpt->root,udata)<0)
- HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, FAIL, "unable to insert record into B+ tree internal node")
-#else /* LATER */
-HDfprintf(stderr,"%s: attempting to insert record with internal node\n",FUNC);
-HGOTO_ERROR(H5E_BTREE, H5E_UNSUPPORTED, FAIL, "Can't insert records yet!")
-#endif /* LATER */
- } /* end if */
- else {
- if(H5BP_insert_leaf(f,dxpl_id,bpt->shared,&bpt->root,udata)<0)
- HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, FAIL, "unable to insert record into B+ tree leaf node")
- } /* end else */
-
-done:
- /* Release the B+ tree header info */
- if (bpt && H5AC_unprotect(f, dxpl_id, H5AC_BPT_HDR, addr, bpt, H5AC__DIRTIED_FLAG) < 0)
- HDONE_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, FAIL, "unable to release B+ tree header info")
-
- FUNC_LEAVE_NOAPI(ret_value)
-} /* H5BP_insert() */
-