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authorQuincey Koziol <koziol@lbl.gov>2017-03-13 19:04:33 (GMT)
committerQuincey Koziol <koziol@lbl.gov>2017-03-13 19:04:33 (GMT)
commit847d675f2743ec420ef6c9efdd6e52ae93b4fe44 (patch)
tree3e74669322711c4ea14f8fd80ecf14da984c6212 /src/H5Cmpio.c
parent56e5b4ed05fb3bad51c226ec5b567871a45e0bce (diff)
parent4fad103187db9095afc8eab90b5f5544feb1d19b (diff)
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Merge pull request #333 in HDFFV/hdf5 from merge_page_buffering_07 to develop
* commit '4fad103187db9095afc8eab90b5f5544feb1d19b': Bring changes to I/O parameters from page_buffering branch. Merge in reentrency changes to "make space in cache" from page_buffering branch. Minor cleanups and bring over "prefetched dirty" fixes for entries loaded from a cache image. Remove some usage of "prefetched_dirty" flag (which hasn't been merged from the page_buffering branch yet. Also, bring over improvements to flush candidate entries for parallel code. Align with incoming page buffering changes: minor cleanups, centralize removing entries from collective metadata read list
Diffstat (limited to 'src/H5Cmpio.c')
-rw-r--r--src/H5Cmpio.c990
1 files changed, 577 insertions, 413 deletions
diff --git a/src/H5Cmpio.c b/src/H5Cmpio.c
index ebb98b3..1f43866 100644
--- a/src/H5Cmpio.c
+++ b/src/H5Cmpio.c
@@ -65,6 +65,11 @@
/* Local Prototypes */
/********************/
static herr_t H5C__collective_write(H5F_t *f, hid_t dxpl_id);
+static herr_t H5C__flush_candidate_entries(H5F_t *f, hid_t dxpl_id,
+ unsigned entries_to_flush[H5C_RING_NTYPES],
+ unsigned entries_to_clear[H5C_RING_NTYPES]);
+static herr_t H5C__flush_candidates_in_ring(H5F_t *f, hid_t dxpl_id,
+ H5C_ring_t ring, unsigned entries_to_flush, unsigned entries_to_clear);
/*********************/
@@ -175,31 +180,18 @@ H5C_apply_candidate_list(H5F_t * f,
int mpi_rank,
int mpi_size)
{
- hbool_t restart_scan;
- hbool_t prev_is_dirty;
int i;
int m;
int n;
unsigned first_entry_to_flush;
unsigned last_entry_to_flush;
- unsigned entries_to_clear = 0;
- unsigned entries_to_flush = 0;
- unsigned entries_to_flush_or_clear_last = 0;
- unsigned entries_to_flush_collectively = 0;
- unsigned entries_cleared = 0;
- unsigned entries_flushed = 0;
- unsigned entries_delayed = 0;
- unsigned entries_flushed_or_cleared_last = 0;
- unsigned entries_flushed_collectively = 0;
- unsigned entries_examined = 0;
- unsigned initial_list_len;
+ unsigned total_entries_to_clear = 0;
+ unsigned total_entries_to_flush = 0;
int * candidate_assignment_table = NULL;
+ unsigned entries_to_flush[H5C_RING_NTYPES];
+ unsigned entries_to_clear[H5C_RING_NTYPES];
haddr_t addr;
- H5C_cache_entry_t * clear_ptr = NULL;
- H5C_cache_entry_t * next_ptr = NULL;
H5C_cache_entry_t * entry_ptr = NULL;
- H5C_cache_entry_t * flush_ptr = NULL;
- H5C_cache_entry_t * delayed_ptr = NULL;
#if H5C_DO_SANITY_CHECKS
haddr_t last_addr;
#endif /* H5C_DO_SANITY_CHECKS */
@@ -220,6 +212,10 @@ H5C_apply_candidate_list(H5F_t * f,
HDassert(0 <= mpi_rank);
HDassert(mpi_rank < mpi_size);
+ /* Initialize the entries_to_flush and entries_to_clear arrays */
+ HDmemset(entries_to_flush, 0, sizeof(entries_to_flush));
+ HDmemset(entries_to_clear, 0, sizeof(entries_to_clear));
+
#if H5C_APPLY_CANDIDATE_LIST__DEBUG
HDfprintf(stdout, "%s:%d: setting up candidate assignment table.\n", FUNC, mpi_rank);
@@ -330,17 +326,26 @@ H5C_apply_candidate_list(H5F_t * f,
*/
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Listed entry is protected?!?!?")
+ /* Sanity checks */
+ HDassert(entry_ptr->magic == H5C__H5C_CACHE_ENTRY_T_MAGIC);
+ HDassert(entry_ptr->ring >= H5C_RING_USER);
+ HDassert(entry_ptr->ring <= H5C_RING_SB);
+ HDassert(!entry_ptr->flush_immediately);
+ HDassert(!entry_ptr->clear_on_unprotect);
+
/* Determine whether the entry is to be cleared or flushed,
* and mark it accordingly. We will scan the protected and
* pinned list shortly, and clear or flush according to these
* markings.
*/
if(u >= first_entry_to_flush && u <= last_entry_to_flush) {
- entries_to_flush++;
+ total_entries_to_flush++;
+ entries_to_flush[entry_ptr->ring]++;
entry_ptr->flush_immediately = TRUE;
} /* end if */
else {
- entries_to_clear++;
+ total_entries_to_clear++;
+ entries_to_clear[entry_ptr->ring]++;
entry_ptr->clear_on_unprotect = TRUE;
} /* end else */
@@ -356,372 +361,36 @@ H5C_apply_candidate_list(H5F_t * f,
} /* end if */
} /* end for */
+#if H5C_DO_SANITY_CHECKS
+ m = 0;
+ n = 0;
+ for(i = 0; i < H5C_RING_NTYPES; i++) {
+ m += (int)entries_to_flush[i];
+ n += (int)entries_to_clear[i];
+ } /* end if */
+
+ HDassert((unsigned)m == total_entries_to_flush);
+ HDassert((unsigned)n == total_entries_to_clear);
+#endif /* H5C_DO_SANITY_CHECKS */
+
#if H5C_APPLY_CANDIDATE_LIST__DEBUG
HDfprintf(stdout, "%s:%d: num candidates/to clear/to flush = %u/%u/%u.\n",
- FUNC, mpi_rank, num_candidates, entries_to_clear,
- entries_to_flush);
+ FUNC, mpi_rank, num_candidates, total_entries_to_clear,
+ total_entries_to_flush);
#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
/* We have now marked all the entries on the candidate list for
* either flush or clear -- now scan the LRU and the pinned list
- * for these entries and do the deed.
+ * for these entries and do the deed. Do this via a call to
+ * H5C__flush_candidate_entries().
*
* Note that we are doing things in this round about manner so as
* to preserve the order of the LRU list to the best of our ability.
* If we don't do this, my experiments indicate that we will have a
* noticably poorer hit ratio as a result.
*/
-
-#if H5C_APPLY_CANDIDATE_LIST__DEBUG
- HDfprintf(stdout, "%s:%d: scanning LRU list. len = %d.\n", FUNC, mpi_rank,
- (int)(cache_ptr->LRU_list_len));
-#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
-
- /* ===================================================================== *
- * Now scan the LRU and PEL lists, flushing or clearing entries as
- * needed.
- *
- * The flush_me_last flag may dictate how or
- * when some entries can be flushed, and should be addressed here.
- * However, in their initial implementation, these flags only apply to the
- * superblock, so there's only a relatively small change to this function
- * to account for this one case where they come into play. If these flags
- * are ever expanded upon, this function and the following flushing steps
- * should be reworked to account for additional cases.
- * ===================================================================== */
-
- HDassert(entries_to_flush >= 0);
-
- restart_scan = FALSE;
- entries_examined = 0;
- initial_list_len = cache_ptr->LRU_list_len;
- entry_ptr = cache_ptr->LRU_tail_ptr;
-
- /* Examine each entry in the LRU list */
- while ( ( entry_ptr != NULL )
- &&
- ( entries_examined <= (entries_to_flush + 1) * initial_list_len )
- &&
- ( (entries_cleared + entries_flushed) < num_candidates ) ) {
-
- if ( entry_ptr->prev != NULL )
- prev_is_dirty = entry_ptr->prev->is_dirty;
-
- /* If this process needs to clear this entry. */
- if(entry_ptr->clear_on_unprotect) {
-
- HDassert(entry_ptr->is_dirty);
-
- next_ptr = entry_ptr->next;
- entry_ptr->clear_on_unprotect = FALSE;
- clear_ptr = entry_ptr;
- entry_ptr = entry_ptr->prev;
- entries_cleared++;
-
-#if ( H5C_APPLY_CANDIDATE_LIST__DEBUG > 1 )
- HDfprintf(stdout, "%s:%d: clearing 0x%llx.\n", FUNC, mpi_rank,
- (long long)clear_ptr->addr);
-#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
-
- /* reset entries_removed_counter and
- * last_entry_removed_ptr prior to the call to
- * H5C__flush_single_entry() so that we can spot
- * unexpected removals of entries from the cache,
- * and set the restart_scan flag if proceeding
- * would be likely to cause us to scan an entry
- * that is no longer in the cache.
- *
- * Note that as of this writing (April 2015) this
- * case cannot occur in the parallel case. However
- * Quincey is making noises about changing this, hence
- * the insertion of this test.
- *
- * Note also that there is no test code to verify
- * that this code actually works (although similar code
- * in the serial version exists and is tested).
- *
- * Implementing a test will likely require implementing
- * flush op like facilities in the parallel tests. At
- * a guess this will not be terribly painful, but it
- * will take a bit of time.
- */
- cache_ptr->entries_removed_counter = 0;
- cache_ptr->last_entry_removed_ptr = NULL;
-
- if(H5C__flush_single_entry(f, dxpl_id, clear_ptr, H5C__FLUSH_CLEAR_ONLY_FLAG | H5C__GENERATE_IMAGE_FLAG | H5C__DEL_FROM_SLIST_ON_DESTROY_FLAG) < 0)
- HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't clear entry.")
-
- if((cache_ptr->entries_removed_counter > 1) ||
- (cache_ptr->last_entry_removed_ptr == entry_ptr))
- restart_scan = TRUE;
- } /* end if */
-
- /* Else, if this process needs to flush this entry. */
- else if (entry_ptr->flush_immediately) {
-
- HDassert(entry_ptr->is_dirty);
-
- next_ptr = entry_ptr->next;
- entry_ptr->flush_immediately = FALSE;
- flush_ptr = entry_ptr;
- entry_ptr = entry_ptr->prev;
- entries_flushed++;
-
-#if ( H5C_APPLY_CANDIDATE_LIST__DEBUG > 1 )
- HDfprintf(stdout, "%s:%d: flushing 0x%llx.\n", FUNC, mpi_rank,
- (long long)flush_ptr->addr);
-#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
-
- /* reset entries_removed_counter and
- * last_entry_removed_ptr prior to the call to
- * H5C__flush_single_entry() so that we can spot
- * unexpected removals of entries from the cache,
- * and set the restart_scan flag if proceeding
- * would be likely to cause us to scan an entry
- * that is no longer in the cache.
- *
- * Note that as of this writing (April 2015) this
- * case cannot occur in the parallel case. However
- * Quincey is making noises about changing this, hence
- * the insertion of this test.
- *
- * Note also that there is no test code to verify
- * that this code actually works (although similar code
- * in the serial version exists and is tested).
- *
- * Implementing a test will likely require implementing
- * flush op like facilities in the parallel tests. At
- * a guess this will not be terribly painful, but it
- * will take a bit of time.
- */
- cache_ptr->entries_removed_counter = 0;
- cache_ptr->last_entry_removed_ptr = NULL;
-
- /* Add this entry to the list of entries to collectively write */
- if(H5C__flush_single_entry(f, dxpl_id, flush_ptr, H5C__DEL_FROM_SLIST_ON_DESTROY_FLAG) < 0)
- HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't flush entry.")
-
- if((cache_ptr->entries_removed_counter > 1) ||
- (cache_ptr->last_entry_removed_ptr == entry_ptr))
- restart_scan = TRUE;
- } /* end else-if */
-
- /* Otherwise, no action to be taken on this entry. Grab the next. */
- else {
- entry_ptr = entry_ptr->prev;
-
- if ( entry_ptr != NULL )
- next_ptr = entry_ptr->next;
-
- } /* end else */
-
- if ( ( entry_ptr != NULL )
- &&
- ( ( restart_scan )
- ||
- ( entry_ptr->is_dirty != prev_is_dirty )
- ||
- ( entry_ptr->next != next_ptr )
- ||
- ( entry_ptr->is_protected )
- ||
- ( entry_ptr->is_pinned )
- )
- ) {
-
- /* something has happened to the LRU -- start over
- * from the tail.
- *
- * Recall that this code should be un-reachable at present,
- * as all the operations by entries on flush that could cause
- * it to be reachable are disallowed in the parallel case at
- * present. Hence the following assertion which should be
- * removed if the above changes.
- */
-
- HDassert( ! restart_scan );
- HDassert( entry_ptr->is_dirty == prev_is_dirty );
- HDassert( entry_ptr->next == next_ptr );
- HDassert( ! entry_ptr->is_protected );
- HDassert( ! entry_ptr->is_pinned );
-
- HDassert(FALSE); /* see comment above */
-
- restart_scan = FALSE;
- entry_ptr = cache_ptr->LRU_tail_ptr;
-/*
- H5C__UPDATE_STATS_FOR_LRU_SCAN_RESTART(cache_ptr)
-*/
- }
-
- entries_examined++;
- } /* end while */
-
-#if H5C_APPLY_CANDIDATE_LIST__DEBUG
- HDfprintf(stdout, "%s:%d: entries examined/cleared/flushed = %u/%u/%u.\n",
- FUNC, mpi_rank, entries_examined,
- entries_cleared, entries_flushed);
-#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
-
- /* It is also possible that some of the cleared entries are on the
- * pinned list. Must scan that also.
- *
- * WARNING:
- *
- * As we now allow unpinning, and removal of other entries as a side
- * effect of flushing an entry, it is possible that the next entry
- * in a PEL scan could either be no longer pinned, or no longer in
- * the cache by the time we get to it.
- *
- * At present, this is not possible in this case, as we disallow such
- * operations in the parallel version of the library. However, Quincey
- * has been making noises about relaxing this. If and when he does,
- * we have a potential problem here.
- *
- * The same issue exists in the serial cache, and there are tests
- * to detect this problem when it occurs, and adjust to it. As seen
- * above in the LRU scan, I have ported such tests to the parallel
- * code where a close cognate exists in the serial code.
- *
- * I haven't done so here, as there are no PEL scans where the problem
- * can occur in the serial code. Needless to say, this will have to
- * be repaired if the constraints on pre_serialize and serialize
- * callbacks are relaxed in the parallel version of the metadata cache.
- *
- * JRM -- 4/1/15
- */
-
-#if H5C_APPLY_CANDIDATE_LIST__DEBUG
- HDfprintf(stdout, "%s:%d: scanning pinned entry list. len = %d\n",
- FUNC, mpi_rank, (int)(cache_ptr->pel_len));
-#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
-
- entry_ptr = cache_ptr->pel_head_ptr;
- while((entry_ptr != NULL) &&
- ((entries_cleared + entries_flushed + entries_delayed)
- < num_candidates)) {
-
- /* If entry is marked for flush or for clear */
- if((entry_ptr->clear_on_unprotect||entry_ptr->flush_immediately)) {
-
- /* If this entry needs to be flushed last */
- if (entry_ptr->flush_me_last) {
-
- /* At this time, only the superblock supports being
- flushed last. Conveniently, it also happens to be the only
- entry that supports being flushed collectively, as well. Also
- conveniently, it's always pinned, so we only need to check
- for it while scanning the PEL here. Finally, it's never
- included in a candidate list that excludes other dirty
- entries in a cache, so we can handle this relatively simple
- case here.
-
- For now, this function asserts this and saves the entry
- to flush it after scanning the rest of the PEL list.
-
- If there are ever more entries that either need to be
- flushed last and/or flushed collectively, this whole routine
- will need to be reworked to handle all additional cases. As
- it is the simple case of a single pinned entry needing
- flushed last and collectively is just a minor addition to
- this routine, but signficantly buffing up the usage of
- flush_me_last will require a more
- intense rework of this function and potentially the function
- of candidate lists as a whole. */
-
- entries_to_flush_or_clear_last++;
- entries_to_flush_collectively++;
- HDassert(entries_to_flush_or_clear_last == 1);
- HDassert(entries_to_flush_collectively == 1);
-
- /* Delay the entry. It will be flushed later. */
- delayed_ptr = entry_ptr;
- entries_delayed++;
- HDassert(entries_delayed == 1);
-
- } /* end if */
-
- /* Else, this process needs to clear this entry. */
- else if (entry_ptr->clear_on_unprotect) {
- HDassert(!entry_ptr->flush_immediately);
- entry_ptr->clear_on_unprotect = FALSE;
- clear_ptr = entry_ptr;
- entry_ptr = entry_ptr->next;
- entries_cleared++;
-
-#if ( H5C_APPLY_CANDIDATE_LIST__DEBUG > 1 )
- HDfprintf(stdout, "%s:%d: clearing 0x%llx.\n", FUNC, mpi_rank,
- (long long)clear_ptr->addr);
-#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
-
- if(H5C__flush_single_entry(f, dxpl_id, clear_ptr, H5C__FLUSH_CLEAR_ONLY_FLAG | H5C__GENERATE_IMAGE_FLAG | H5C__DEL_FROM_SLIST_ON_DESTROY_FLAG) < 0)
- HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't clear entry.")
- } /* end else-if */
-
- /* Else, if this process needs to independently flush this entry. */
- else if (entry_ptr->flush_immediately) {
- entry_ptr->flush_immediately = FALSE;
- flush_ptr = entry_ptr;
- entry_ptr = entry_ptr->next;
- entries_flushed++;
-
-#if ( H5C_APPLY_CANDIDATE_LIST__DEBUG > 1 )
- HDfprintf(stdout, "%s:%d: flushing 0x%llx.\n", FUNC, mpi_rank,
- (long long)flush_ptr->addr);
-#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
-
- /* Add this entry to the list of entries to collectively write */
- if(H5C__flush_single_entry(f, dxpl_id, flush_ptr, H5C__DEL_FROM_SLIST_ON_DESTROY_FLAG) < 0)
- HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't clear entry.")
- } /* end else-if */
- } /* end if */
-
- /* Otherwise, this entry is not marked for flush or clear. Grab the next. */
- else {
- entry_ptr = entry_ptr->next;
- } /* end else */
-
- } /* end while */
-
-#if H5C_APPLY_CANDIDATE_LIST__DEBUG
- HDfprintf(stdout,
- "%s:%d: pel entries examined/cleared/flushed = %u/%u/%u.\n",
- FUNC, mpi_rank, entries_examined,
- entries_cleared, entries_flushed);
- HDfprintf(stdout, "%s:%d: done.\n", FUNC, mpi_rank);
-
- HDfsync(stdout);
-#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
-
- /* ====================================================================== *
- * Now, handle all delayed entries. *
- * *
- * This can *only* be the superblock at this time, so it's relatively *
- * easy to deal with. We're collectively flushing the entry saved from *
- * above. This will need to be handled differently if there are ever more *
- * than one entry needing this special treatment.) *
- * ====================================================================== */
-
- if (delayed_ptr) {
-
- if (delayed_ptr->clear_on_unprotect) {
- if(H5C__flush_single_entry(f, dxpl_id, delayed_ptr, H5C__FLUSH_CLEAR_ONLY_FLAG | H5C__GENERATE_IMAGE_FLAG) < 0)
- HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't flush entry.")
-
- entry_ptr->clear_on_unprotect = FALSE;
- entries_cleared++;
- } else if (delayed_ptr->flush_immediately) {
- /* Add this entry to the list of entries to collectively write */
- if(H5C__flush_single_entry(f, dxpl_id, delayed_ptr, H5C__DEL_FROM_SLIST_ON_DESTROY_FLAG) < 0)
- HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't flush entry collectively.")
-
- entry_ptr->flush_immediately = FALSE;
- entries_flushed++;
- } /* end if */
-
- entries_flushed_collectively++;
- entries_flushed_or_cleared_last++;
- } /* end if */
+ if(H5C__flush_candidate_entries(f, dxpl_id, entries_to_flush, entries_to_clear) < 0)
+ HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "flush candidates failed")
/* If we've deferred writing to do it collectively, take care of that now */
if(f->coll_md_write) {
@@ -733,21 +402,6 @@ H5C_apply_candidate_list(H5F_t * f,
HGOTO_ERROR(H5E_CACHE, H5E_WRITEERROR, FAIL, "can't write metadata collectively")
} /* end if */
- /* ====================================================================== *
- * Finished flushing everything. *
- * ====================================================================== */
-
- HDassert((entries_flushed == entries_to_flush));
- HDassert((entries_cleared == entries_to_clear));
- HDassert((entries_flushed_or_cleared_last == entries_to_flush_or_clear_last));
- HDassert((entries_flushed_collectively == entries_to_flush_collectively));
-
- if((entries_flushed != entries_to_flush) ||
- (entries_cleared != entries_to_clear) ||
- (entries_flushed_or_cleared_last != entries_to_flush_or_clear_last) ||
- (entries_flushed_collectively != entries_to_flush_collectively))
- HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "entry count mismatch")
-
done:
if(candidate_assignment_table != NULL)
candidate_assignment_table = (int *)H5MM_xfree((void *)candidate_assignment_table);
@@ -998,11 +652,13 @@ H5C_mark_entries_as_clean(H5F_t * f,
{
H5C_t * cache_ptr;
unsigned entries_cleared;
+ unsigned pinned_entries_cleared;
+ hbool_t progress;
unsigned entries_examined;
unsigned initial_list_len;
haddr_t addr;
-#if H5C_DO_SANITY_CHECKS
unsigned pinned_entries_marked = 0;
+#if H5C_DO_SANITY_CHECKS
unsigned protected_entries_marked = 0;
unsigned other_entries_marked = 0;
haddr_t last_addr;
@@ -1086,19 +742,13 @@ H5C_mark_entries_as_clean(H5F_t * f,
} /* end if */
entry_ptr->clear_on_unprotect = TRUE;
+ if(entry_ptr->is_pinned)
+ pinned_entries_marked++;
#if H5C_DO_SANITY_CHECKS
- if ( entry_ptr->is_protected ) {
-
+ else if(entry_ptr->is_protected)
protected_entries_marked++;
-
- } else if ( entry_ptr->is_pinned ) {
-
- pinned_entries_marked++;
-
- } else {
-
+ else
other_entries_marked++;
- }
#endif /* H5C_DO_SANITY_CHECKS */
}
}
@@ -1140,7 +790,8 @@ H5C_mark_entries_as_clean(H5F_t * f,
entry_ptr = entry_ptr->prev;
entries_cleared++;
- if(H5C__flush_single_entry(f, dxpl_id, clear_ptr, H5C__FLUSH_CLEAR_ONLY_FLAG | H5C__DEL_FROM_SLIST_ON_DESTROY_FLAG) < 0)
+ if(H5C__flush_single_entry(f, dxpl_id, clear_ptr,
+ (H5C__FLUSH_CLEAR_ONLY_FLAG | H5C__GENERATE_IMAGE_FLAG)) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't clear entry")
} /* end if */
else
@@ -1155,19 +806,27 @@ H5C_mark_entries_as_clean(H5F_t * f,
/* It is also possible that some of the cleared entries are on the
* pinned list. Must scan that also.
*/
- entry_ptr = cache_ptr->pel_head_ptr;
- while(entry_ptr != NULL) {
- if(entry_ptr->clear_on_unprotect) {
- entry_ptr->clear_on_unprotect = FALSE;
- clear_ptr = entry_ptr;
- entry_ptr = entry_ptr->next;
- entries_cleared++;
+ pinned_entries_cleared = 0;
+ progress = TRUE;
+ while((pinned_entries_cleared < pinned_entries_marked) && progress) {
+ progress = FALSE;
+ entry_ptr = cache_ptr->pel_head_ptr;
+ while(entry_ptr != NULL) {
+ if(entry_ptr->clear_on_unprotect && entry_ptr->flush_dep_ndirty_children == 0) {
+ entry_ptr->clear_on_unprotect = FALSE;
+ clear_ptr = entry_ptr;
+ entry_ptr = entry_ptr->next;
+ entries_cleared++;
+ pinned_entries_cleared++;
+ progress = TRUE;
- if(H5C__flush_single_entry(f, dxpl_id, clear_ptr, H5C__FLUSH_CLEAR_ONLY_FLAG | H5C__DEL_FROM_SLIST_ON_DESTROY_FLAG) < 0)
- HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't clear entry")
- } /* end if */
- else
- entry_ptr = entry_ptr->next;
+ if(H5C__flush_single_entry(f, dxpl_id, clear_ptr,
+ (H5C__FLUSH_CLEAR_ONLY_FLAG | H5C__GENERATE_IMAGE_FLAG)) < 0)
+ HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't clear entry")
+ } /* end if */
+ else
+ entry_ptr = entry_ptr->next;
+ } /* end while */
} /* end while */
#if H5C_DO_SANITY_CHECKS
@@ -1297,7 +956,6 @@ H5C__collective_write(H5F_t *f, hid_t dxpl_id)
/* Get number of entries in collective write list */
count = (int)H5SL_count(cache_ptr->coll_write_list);
-
if(count > 0) {
H5FD_mpio_xfer_t xfer_mode = H5FD_MPIO_COLLECTIVE;
H5SL_node_t *node;
@@ -1410,4 +1068,510 @@ done:
FUNC_LEAVE_NOAPI(ret_value);
} /* end H5C__collective_write() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5C__flush_candidate_entries
+ *
+ * Purpose: Flush or clear (as indicated) the candidate entries that
+ * have been marked in the metadata cache. In so doing,
+ * observe rings and flush dependencies.
+ *
+ * Note that this function presumes that:
+ *
+ * 1) no candidate entries are protected,
+ *
+ * 2) all candidate entries are dirty, and
+ *
+ * 3) if a candidate entry has a dirty flush dependency
+ * child, that child is also a candidate entry.
+ *
+ * The function will fail if any of these preconditions are
+ * not met.
+ *
+ * Candidate entries are marked by setting either the
+ * flush_immediately or the clear_on_unprotect flags in the
+ * cache entry (but not both). Entries marked flush_immediately
+ * will be flushed, those marked clear_on_unprotect will be
+ * cleared.
+ *
+ * Note that this function is a modified version of
+ * H5C_flush_cache() -- any changes there may need to be
+ * reflected here and vise versa.
+ *
+ * Return: Non-negative on success/Negative on failure.
+ *
+ * Programmer: John Mainzer
+ * 2/10/17
+ *
+ * Changes: None.
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5C__flush_candidate_entries(H5F_t *f, hid_t dxpl_id,
+ unsigned entries_to_flush[H5C_RING_NTYPES],
+ unsigned entries_to_clear[H5C_RING_NTYPES])
+{
+#if H5C_DO_SANITY_CHECKS
+ int i;
+ uint32_t index_len = 0;
+ size_t index_size = (size_t)0;
+ size_t clean_index_size = (size_t)0;
+ size_t dirty_index_size = (size_t)0;
+ size_t slist_size = (size_t)0;
+ uint32_t slist_len = 0;
+#endif /* H5C_DO_SANITY_CHECKS */
+ H5C_ring_t ring;
+ H5C_t * cache_ptr;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_STATIC
+
+ HDassert(f);
+ HDassert(f->shared);
+
+ cache_ptr = f->shared->cache;
+
+ HDassert(cache_ptr);
+ HDassert(cache_ptr->magic == H5C__H5C_T_MAGIC);
+ HDassert(cache_ptr->slist_ptr);
+
+ HDassert(entries_to_flush[H5C_RING_UNDEFINED] == 0);
+ HDassert(entries_to_clear[H5C_RING_UNDEFINED] == 0);
+
+#if H5C_DO_SANITY_CHECKS
+ HDassert(cache_ptr->index_ring_len[H5C_RING_UNDEFINED] == 0);
+ HDassert(cache_ptr->index_ring_size[H5C_RING_UNDEFINED] == (size_t)0);
+ HDassert(cache_ptr->clean_index_ring_size[H5C_RING_UNDEFINED] == (size_t)0);
+ HDassert(cache_ptr->dirty_index_ring_size[H5C_RING_UNDEFINED] == (size_t)0);
+ HDassert(cache_ptr->slist_ring_len[H5C_RING_UNDEFINED] == 0);
+ HDassert(cache_ptr->slist_ring_size[H5C_RING_UNDEFINED] == (size_t)0);
+
+ for(i = H5C_RING_USER; i < H5C_RING_NTYPES; i++) {
+ index_len += cache_ptr->index_ring_len[i];
+ index_size += cache_ptr->index_ring_size[i];
+ clean_index_size += cache_ptr->clean_index_ring_size[i];
+ dirty_index_size += cache_ptr->dirty_index_ring_size[i];
+
+ slist_len += cache_ptr->slist_ring_len[i];
+ slist_size += cache_ptr->slist_ring_size[i];
+ } /* end for */
+
+ HDassert(cache_ptr->index_len == index_len);
+ HDassert(cache_ptr->index_size == index_size);
+ HDassert(cache_ptr->clean_index_size == clean_index_size);
+ HDassert(cache_ptr->dirty_index_size == dirty_index_size);
+ HDassert(cache_ptr->slist_len == slist_len);
+ HDassert(cache_ptr->slist_size == slist_size);
+#endif /* H5C_DO_SANITY_CHECKS */
+
+#if H5C_DO_EXTREME_SANITY_CHECKS
+ if(H5C_validate_protected_entry_list(cache_ptr) < 0
+ || H5C_validate_pinned_entry_list(cache_ptr) < 0
+ || H5C_validate_lru_list(cache_ptr) < 0)
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "an extreme sanity check failed on entry")
+#endif /* H5C_DO_EXTREME_SANITY_CHECKS */
+
+ cache_ptr->flush_in_progress = TRUE;
+
+ /* flush each ring, starting from the outermost ring and
+ * working inward.
+ */
+ ring = H5C_RING_USER;
+ while(ring < H5C_RING_NTYPES) {
+ if(H5C__flush_candidates_in_ring(f, dxpl_id, ring, entries_to_flush[ring], entries_to_clear[ring]) < 0)
+ HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "flush candidates in ring failed")
+
+ ring++;
+ } /* end while */
+
+done:
+ cache_ptr->flush_in_progress = FALSE;
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5C__flush_candidate_entries() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5C__flush_candidates_in_ring
+ *
+ * Purpose: Flush or clear (as indicated) the candidate entries
+ * contained in the specified cache and ring. All candidate
+ * entries in rings outside the specified ring must have been
+ * flushed (or cleared) on entry.
+ *
+ * Note that this function presumes that:
+ *
+ * 1) no candidate entries are protected,
+ *
+ * 2) all candidate entries are dirty, and
+ *
+ * 3) if a candidate entry has a dirty flush dependency
+ * child, that child is also a candidate entry.
+ *
+ * The function will fail if any of these preconditions are
+ * not met.
+ *
+ * Candidate entries are marked by setting either the
+ * flush_immediately or the clear_on_unprotect flags in the
+ * cache entry (but not both). Entries marked flush_immediately
+ * will be flushed, those marked clear_on_unprotect will be
+ * cleared.
+ *
+ * Candidate entries residing in the LRU must be flushed
+ * (or cleared) in LRU order to avoid performance issues.
+ *
+ * Return: Non-negative on success/Negative on failure.
+ *
+ * Programmer: John Mainzer
+ * 2/10/17
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5C__flush_candidates_in_ring(H5F_t *f, hid_t dxpl_id, H5C_ring_t ring,
+ unsigned entries_to_flush, unsigned entries_to_clear)
+{
+ H5C_t * cache_ptr;
+ hbool_t progress;
+ hbool_t restart_scan = FALSE;
+ unsigned entries_flushed = 0;
+ unsigned entries_cleared = 0;
+#if H5C_DO_SANITY_CHECKS
+ unsigned init_index_len;
+#endif /* H5C_DO_SANITY_CHECKS */
+ unsigned clear_flags = H5C__FLUSH_CLEAR_ONLY_FLAG |
+ H5C__GENERATE_IMAGE_FLAG;
+ unsigned flush_flags = H5C__NO_FLAGS_SET;
+ unsigned op_flags;
+ H5C_cache_entry_t *op_ptr;
+ H5C_cache_entry_t *entry_ptr;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity checks */
+ HDassert(f);
+ HDassert(f->shared);
+ cache_ptr = f->shared->cache;
+ HDassert(cache_ptr);
+ HDassert(cache_ptr->magic == H5C__H5C_T_MAGIC);
+ HDassert(cache_ptr->slist_ptr);
+ HDassert(ring > H5C_RING_UNDEFINED);
+ HDassert(ring < H5C_RING_NTYPES);
+
+#if H5C_DO_EXTREME_SANITY_CHECKS
+ if((H5C_validate_protected_entry_list(cache_ptr) < 0) ||
+ (H5C_validate_pinned_entry_list(cache_ptr) < 0) ||
+ (H5C_validate_lru_list(cache_ptr) < 0))
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "an extreme sanity check failed on entry")
+#endif /* H5C_DO_EXTREME_SANITY_CHECKS */
+
+#if H5C_DO_SANITY_CHECKS
+ /* index len should not change */
+ init_index_len = cache_ptr->index_len;
+#endif /* H5C_DO_SANITY_CHECKS */
+
+ /* Examine entries in the LRU list, and flush or clear all entries
+ * so marked in the target ring.
+ *
+ * With the current implementation of flush dependencies, no entry
+ * in the LRU can have flush dependency children -- thus one pass
+ * through the LRU will be sufficient.
+ *
+ * It is possible that this will change -- hence the assertion.
+ */
+ restart_scan = FALSE;
+ entry_ptr = cache_ptr->LRU_tail_ptr;
+ while(((entries_flushed < entries_to_flush) || (entries_cleared < entries_to_clear))
+ && (entry_ptr != NULL)) {
+ hbool_t prev_is_dirty = FALSE;
+ H5C_cache_entry_t *next_ptr;
+
+ /* Entries in the LRU must not have flush dependency children */
+ HDassert(entry_ptr->flush_dep_nchildren == 0);
+
+ /* Remember dirty state of entry to advance to */
+ if(entry_ptr->prev != NULL)
+ prev_is_dirty = entry_ptr->prev->is_dirty;
+
+ /* If the entry is in the ring */
+ if(entry_ptr->ring == ring) {
+ /* If this process needs to clear this entry. */
+ if(entry_ptr->clear_on_unprotect) {
+ HDassert(entry_ptr->is_dirty);
+
+ /* Set entry and flags for operation */
+ op_ptr = entry_ptr;
+ op_flags = clear_flags;
+
+ /* Set next entry appropriately */
+ next_ptr = entry_ptr->next;
+
+ /* Reset entry flag */
+ entry_ptr->clear_on_unprotect = FALSE;
+ entries_cleared++;
+ } /* end if */
+ else if(entry_ptr->flush_immediately) {
+ HDassert(entry_ptr->is_dirty);
+
+ /* Set entry and flags for operation */
+ op_ptr = entry_ptr;
+ op_flags = flush_flags;
+
+ /* Set next entry appropriately */
+ next_ptr = entry_ptr->next;
+
+ /* Reset entry flag */
+ entry_ptr->flush_immediately = FALSE;
+ entries_flushed++;
+ } /* end else-if */
+ else {
+ /* No operation for this entry */
+ op_ptr = NULL;
+
+ /* Set next entry appropriately */
+ next_ptr = entry_ptr;
+ } /* end else */
+
+ /* Advance to next entry */
+ entry_ptr = entry_ptr->prev;
+
+ /* Check for operation */
+ if(op_ptr) {
+ /* reset entries_removed_counter and
+ * last_entry_removed_ptr prior to the call to
+ * H5C__flush_single_entry() so that we can spot
+ * unexpected removals of entries from the cache,
+ * and set the restart_scan flag if proceeding
+ * would be likely to cause us to scan an entry
+ * that is no longer in the cache.
+ *
+ * Note that as of this writing, this
+ * case cannot occur in the parallel case.
+ *
+ * Note also that there is no test code to verify
+ * that this code actually works (although similar code
+ * in the serial version exists and is tested).
+ */
+ cache_ptr->entries_removed_counter = 0;
+ cache_ptr->last_entry_removed_ptr = NULL;
+
+ if(H5C__flush_single_entry(f, dxpl_id, op_ptr, op_flags) < 0)
+ HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't flush entry")
+
+ if(cache_ptr->entries_removed_counter != 0
+ || cache_ptr->last_entry_removed_ptr != NULL)
+ restart_scan = TRUE;
+ } /* end if */
+ } /* end if */
+ else {
+ /* Remember "next" pointer (after advancing entries) */
+ next_ptr = entry_ptr;
+
+ /* Advance to next entry */
+ entry_ptr = entry_ptr->prev;
+ } /* end else */
+
+ /* Check for restarts, etc. */
+ if((entry_ptr != NULL) &&
+ (restart_scan || (entry_ptr->is_dirty != prev_is_dirty)
+ || (entry_ptr->next != next_ptr) || entry_ptr->is_protected
+ || entry_ptr->is_pinned)) {
+
+ /* Something has happened to the LRU -- start over
+ * from the tail.
+ *
+ * Recall that this code should be un-reachable at present,
+ * as all the operations by entries on flush that could cause
+ * it to be reachable are disallowed in the parallel case at
+ * present. Hence the following assertion which should be
+ * removed if the above changes.
+ */
+ HDassert(!restart_scan);
+ HDassert(entry_ptr->is_dirty == prev_is_dirty);
+ HDassert(entry_ptr->next == next_ptr);
+ HDassert(!entry_ptr->is_protected);
+ HDassert(!entry_ptr->is_pinned);
+
+ HDassert(FALSE); /* see comment above */
+
+ restart_scan = FALSE;
+ entry_ptr = cache_ptr->LRU_tail_ptr;
+
+ H5C__UPDATE_STATS_FOR_LRU_SCAN_RESTART(cache_ptr)
+ } /* end if */
+ } /* end while */
+
+ /* It is also possible that some of the cleared entries are on the
+ * pinned list. Must scan that also.
+ *
+ * Observe that in the case of the pinned entry list, most of the
+ * entries will have flush dependency children. As entries with
+ * flush dependency children may not be flushed until all of their
+ * children are clean, multiple passes throguh the pinned entry list
+ * may be required.
+ *
+ * WARNING:
+ *
+ * As we now allow unpinning, and removal of other entries as a side
+ * effect of flushing an entry, it is possible that the next entry
+ * in a PEL scan could either be no longer pinned, or no longer in
+ * the cache by the time we get to it.
+ *
+ * At present, this should not be possible in this case, as we disallow
+ * such operations in the parallel version of the library. However,
+ * this may change, and to that end, I have included code to detect
+ * such changes and cause this function to fail if they are detected.
+ */
+ progress = TRUE;
+ while(progress && ((entries_flushed < entries_to_flush) || (entries_cleared < entries_to_clear))) {
+ progress = FALSE;
+ entry_ptr = cache_ptr->pel_head_ptr;
+ while((entry_ptr != NULL) &&
+ ((entries_flushed < entries_to_flush) || (entries_cleared < entries_to_clear))) {
+ H5C_cache_entry_t *prev_ptr;
+ hbool_t next_is_dirty = FALSE;
+
+ HDassert(entry_ptr->is_pinned);
+
+ /* Remember dirty state of entry to advance to */
+ if(entry_ptr->next != NULL)
+ next_is_dirty = entry_ptr->next->is_dirty;
+
+ if(entry_ptr->ring == ring && entry_ptr->flush_dep_ndirty_children == 0) {
+ if(entry_ptr->clear_on_unprotect) {
+ HDassert(entry_ptr->is_dirty);
+
+ /* Set entry and flags for operation */
+ op_ptr = entry_ptr;
+ op_flags = clear_flags;
+
+ /* Reset entry flag */
+ entry_ptr->clear_on_unprotect = FALSE;
+ entries_cleared++;
+ progress = TRUE;
+ } /* end if */
+ else if(entry_ptr->flush_immediately) {
+ HDassert(entry_ptr->is_dirty);
+
+ /* Set entry and flags for operation */
+ op_ptr = entry_ptr;
+ op_flags = flush_flags;
+
+ /* Reset entry flag */
+ entry_ptr->flush_immediately = FALSE;
+ entries_flushed++;
+ progress = TRUE;
+ } /* end else-if */
+ else
+ /* No operation for this entry */
+ op_ptr = NULL;
+
+ /* Check for operation */
+ if(op_ptr) {
+ /* reset entries_removed_counter and
+ * last_entry_removed_ptr prior to the call to
+ * H5C__flush_single_entry() so that we can spot
+ * unexpected removals of entries from the cache,
+ * and set the restart_scan flag if proceeding
+ * would be likely to cause us to scan an entry
+ * that is no longer in the cache.
+ *
+ * Note that as of this writing, this
+ * case cannot occur in the parallel case.
+ *
+ * Note also that there is no test code to verify
+ * that this code actually works (although similar code
+ * in the serial version exists and is tested).
+ */
+ cache_ptr->entries_removed_counter = 0;
+ cache_ptr->last_entry_removed_ptr = NULL;
+
+ /* Add this entry to the list of entries to collectively write
+ *
+ * This comment is misleading -- the entry will be added to the
+ * collective write list only if said list exists.
+ *
+ * JRM -- 2/9/17
+ */
+ if(H5C__flush_single_entry(f, dxpl_id, op_ptr, op_flags) < 0)
+ HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't flush entry")
+
+ if(cache_ptr->entries_removed_counter != 0
+ || cache_ptr->last_entry_removed_ptr != NULL)
+ restart_scan = TRUE;
+ } /* end if */
+ } /* end if */
+
+ /* Remember "previous" pointer (after advancing entries) */
+ prev_ptr = entry_ptr;
+
+ /* Advance to next entry */
+ entry_ptr = entry_ptr->next;
+
+ /* Check for restarts, etc. */
+ if((entry_ptr != NULL) &&
+ (restart_scan || (entry_ptr->is_dirty != next_is_dirty)
+ || (entry_ptr->prev != prev_ptr) || entry_ptr->is_protected
+ || !entry_ptr->is_pinned)) {
+ /* Something has happened to the pinned entry list -- start
+ * over from the head.
+ *
+ * Recall that this code should be un-reachable at present,
+ * as all the operations by entries on flush that could cause
+ * it to be reachable are disallowed in the parallel case at
+ * present. Hence the following assertion which should be
+ * removed if the above changes.
+ */
+
+ HDassert(!restart_scan);
+ HDassert(entry_ptr->is_dirty == next_is_dirty);
+ HDassert(entry_ptr->prev == prev_ptr);
+ HDassert(!entry_ptr->is_protected);
+ HDassert(entry_ptr->is_pinned);
+
+ HDassert(FALSE); /* see comment above */
+
+ restart_scan = FALSE;
+
+ entry_ptr = cache_ptr->pel_head_ptr;
+
+ /* we don't keeps stats for pinned entry list scan
+ * restarts. If this code ever becomes reachable,
+ * define the necessary field, and implement the
+ * the following macro:
+ *
+ * H5C__UPDATE_STATS_FOR_PEL_SCAN_RESTART(cache_ptr)
+ */
+ } /* end if */
+ } /* end while ( ( entry_ptr != NULL ) &&
+ * ( ( entries_flushed > entries_to_flush ) ||
+ * ( entries_cleared > entries_to_clear ) ) )
+ */
+ } /* end while ( ( ( entries_flushed > entries_to_flush ) ||
+ * ( entries_cleared > entries_to_clear ) ) &&
+ * ( progress ) )
+ */
+
+#if H5C_DO_SANITY_CHECKS
+ HDassert(init_index_len == cache_ptr->index_len);
+#endif /* H5C_DO_SANITY_CHECKS */
+
+ if(entries_flushed != entries_to_flush || entries_cleared != entries_to_clear) {
+ entry_ptr = cache_ptr->il_head;
+ while(entry_ptr != NULL) {
+ HDassert(!entry_ptr->clear_on_unprotect || (entry_ptr->ring > ring));
+ HDassert(!entry_ptr->flush_immediately || (entry_ptr->ring > ring));
+ entry_ptr = entry_ptr->il_next;
+ } /* end while */
+
+ HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't flush/clear all entries")
+ } /* end if */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5C__flush_candidates_in_ring() */
#endif /* H5_HAVE_PARALLEL */
+