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authorQuincey Koziol <koziol@hdfgroup.org>2008-12-11 18:49:25 (GMT)
committerQuincey Koziol <koziol@hdfgroup.org>2008-12-11 18:49:25 (GMT)
commit4168cf3af65596824715ee7d4dd989d8578a95c0 (patch)
treebead2aaeb7e6e1852985f0a5593e2af344745a1f /src/H5Dbtree.c
parent32ce1dd47d5d0ee511373e86812185bd6b96c8b5 (diff)
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[svn-r16181] Description:
Bring r16180 back from trunk: Rename the current chunk indexing routines module for B-tree indices to better reflect their purpose, and to make the upcoming extensible array index module fit in better. Tested: FreeBSD/32 6.3 Too minor to require h5committest
Diffstat (limited to 'src/H5Dbtree.c')
-rw-r--r--src/H5Dbtree.c1389
1 files changed, 1389 insertions, 0 deletions
diff --git a/src/H5Dbtree.c b/src/H5Dbtree.c
new file mode 100644
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+++ b/src/H5Dbtree.c
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+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Programmer: Robb Matzke <matzke@llnl.gov>
+ * Wednesday, October 8, 1997
+ *
+ * Purpose: Indexed (chunked) I/O functions. The logical
+ * multi-dimensional data space is regularly partitioned into
+ * same-sized "chunks", the first of which is aligned with the
+ * logical origin. The chunks are given a multi-dimensional
+ * index which is used as a lookup key in a B-tree that maps
+ * chunk index to disk address. Each chunk can be compressed
+ * independently and the chunks may move around in the file as
+ * their storage requirements change.
+ *
+ * Cache: Disk I/O is performed in units of chunks and H5MF_alloc()
+ * contains code to optionally align chunks on disk block
+ * boundaries for performance.
+ *
+ * The chunk cache is an extendible hash indexed by a function
+ * of storage B-tree address and chunk N-dimensional offset
+ * within the dataset. Collisions are not resolved -- one of
+ * the two chunks competing for the hash slot must be preempted
+ * from the cache. All entries in the hash also participate in
+ * a doubly-linked list and entries are penalized by moving them
+ * toward the front of the list. When a new chunk is about to
+ * be added to the cache the heap is pruned by preempting
+ * entries near the front of the list to make room for the new
+ * entry which is added to the end of the list.
+ */
+
+/****************/
+/* Module Setup */
+/****************/
+
+#define H5B_PACKAGE /*suppress error about including H5Bpkg */
+#define H5D_PACKAGE /*suppress error about including H5Dpkg */
+
+
+/***********/
+/* Headers */
+/***********/
+#include "H5private.h" /* Generic Functions */
+#include "H5Bpkg.h" /* B-link trees */
+#include "H5Dpkg.h" /* Datasets */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5Fprivate.h" /* Files */
+#include "H5FDprivate.h" /* File drivers */
+#include "H5FLprivate.h" /* Free Lists */
+#include "H5Iprivate.h" /* IDs */
+#include "H5MFprivate.h" /* File space management */
+#include "H5MMprivate.h" /* Memory management */
+#include "H5Oprivate.h" /* Object headers */
+#include "H5Pprivate.h" /* Property lists */
+#include "H5Sprivate.h" /* Dataspaces */
+#include "H5SLprivate.h" /* Skip lists */
+#include "H5Vprivate.h" /* Vector and array functions */
+
+/****************/
+/* Local Macros */
+/****************/
+
+/*
+ * Given a B-tree node return the dimensionality of the chunks pointed to by
+ * that node.
+ */
+#define H5D_ISTORE_NDIMS(X) (((X)->sizeof_rkey-8)/8)
+
+/******************/
+/* Local Typedefs */
+/******************/
+
+/*
+ * B-tree key. A key contains the minimum logical N-dimensional coordinates and
+ * the logical size of the chunk to which this key refers. The
+ * fastest-varying dimension is assumed to reference individual bytes of the
+ * array, so a 100-element 1-d array of 4-byte integers would really be a 2-d
+ * array with the slow varying dimension of size 100 and the fast varying
+ * dimension of size 4 (the storage dimensionality has very little to do with
+ * the real dimensionality).
+ *
+ * Only the first few values of the OFFSET and SIZE fields are actually
+ * stored on disk, depending on the dimensionality.
+ *
+ * The chunk's file address is part of the B-tree and not part of the key.
+ */
+typedef struct H5D_istore_key_t {
+ uint32_t nbytes; /*size of stored data */
+ hsize_t offset[H5O_LAYOUT_NDIMS]; /*logical offset to start*/
+ unsigned filter_mask; /*excluded filters */
+} H5D_istore_key_t;
+
+/*
+ * Data exchange structure for indexed storage nodes. This structure is
+ * passed through the B-link tree layer to the methods for the objects
+ * to which the B-link tree points for operations which require no
+ * additional information.
+ *
+ * (Just an alias for the "common" info).
+ */
+typedef H5D_chunk_common_ud_t H5D_istore_ud0_t;
+
+/* B-tree callback info for iteration over chunks */
+typedef struct H5D_istore_it_ud_t {
+ H5D_chunk_common_ud_t common; /* Common info for B-tree user data (must be first) */
+ H5D_chunk_cb_func_t cb; /* Chunk callback routine */
+ void *udata; /* User data for chunk callback routine */
+} H5D_istore_it_ud_t;
+
+
+/********************/
+/* Local Prototypes */
+/********************/
+
+static herr_t H5D_istore_shared_create(const H5F_t *f, H5O_layout_t *layout);
+
+/* B-tree iterator callbacks */
+static int H5D_istore_idx_iterate_cb(H5F_t *f, hid_t dxpl_id, const void *left_key,
+ haddr_t addr, const void *right_key, void *_udata);
+
+/* B-tree callbacks */
+static H5RC_t *H5D_istore_get_shared(const H5F_t *f, const void *_udata);
+static herr_t H5D_istore_new_node(H5F_t *f, hid_t dxpl_id, H5B_ins_t, void *_lt_key,
+ void *_udata, void *_rt_key,
+ haddr_t *addr_p /*out*/);
+static int H5D_istore_cmp2(H5F_t *f, hid_t dxpl_id, void *_lt_key, void *_udata,
+ void *_rt_key);
+static int H5D_istore_cmp3(H5F_t *f, hid_t dxpl_id, void *_lt_key, void *_udata,
+ void *_rt_key);
+static htri_t H5D_istore_found(H5F_t *f, hid_t dxpl_id, haddr_t addr, const void *_lt_key,
+ void *_udata);
+static H5B_ins_t H5D_istore_insert(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_lt_key,
+ hbool_t *lt_key_changed, void *_md_key,
+ void *_udata, void *_rt_key,
+ hbool_t *rt_key_changed,
+ haddr_t *new_node/*out*/);
+static H5B_ins_t H5D_istore_remove( H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_lt_key,
+ hbool_t *lt_key_changed, void *_udata, void *_rt_key,
+ hbool_t *rt_key_changed);
+static herr_t H5D_istore_decode_key(const H5F_t *f, const H5B_t *bt, const uint8_t *raw,
+ void *_key);
+static herr_t H5D_istore_encode_key(const H5F_t *f, const H5B_t *bt, uint8_t *raw,
+ void *_key);
+static herr_t H5D_istore_debug_key(FILE *stream, H5F_t *f, hid_t dxpl_id,
+ int indent, int fwidth, const void *key,
+ const void *udata);
+
+/* Chunked layout indexing callbacks */
+static herr_t H5D_istore_idx_init(const H5D_chk_idx_info_t *idx_info);
+static herr_t H5D_istore_idx_create(const H5D_chk_idx_info_t *idx_info);
+static herr_t H5D_istore_idx_insert(const H5D_chk_idx_info_t *idx_info,
+ H5D_chunk_ud_t *udata);
+static herr_t H5D_istore_idx_get_addr(const H5D_chk_idx_info_t *idx_info,
+ H5D_chunk_ud_t *udata);
+static int H5D_istore_idx_iterate(const H5D_chk_idx_info_t *idx_info,
+ H5D_chunk_cb_func_t chunk_cb, void *chunk_udata);
+static herr_t H5D_istore_idx_remove(const H5D_chk_idx_info_t *idx_info,
+ H5D_chunk_common_ud_t *udata);
+static herr_t H5D_istore_idx_delete(const H5D_chk_idx_info_t *idx_info);
+static herr_t H5D_istore_idx_copy_setup(const H5D_chk_idx_info_t *idx_info_src,
+ const H5D_chk_idx_info_t *idx_info_dst);
+static herr_t H5D_istore_idx_copy_shutdown(H5O_layout_t *layout_src,
+ H5O_layout_t *layout_dst);
+static herr_t H5D_istore_idx_size(const H5D_chk_idx_info_t *idx_info,
+ hsize_t *size);
+static herr_t H5D_istore_idx_dest(const H5D_chk_idx_info_t *idx_info);
+
+
+/*********************/
+/* Package Variables */
+/*********************/
+
+/* v1 B-tree indexed chunk I/O ops */
+const H5D_chunk_ops_t H5D_COPS_ISTORE[1] = {{
+ H5D_istore_idx_init,
+ H5D_istore_idx_create,
+ H5D_istore_idx_insert,
+ H5D_istore_idx_get_addr,
+ H5D_istore_idx_iterate,
+ H5D_istore_idx_remove,
+ H5D_istore_idx_delete,
+ H5D_istore_idx_copy_setup,
+ H5D_istore_idx_copy_shutdown,
+ H5D_istore_idx_size,
+ H5D_istore_idx_dest
+}};
+
+
+/*****************************/
+/* Library Private Variables */
+/*****************************/
+
+/* inherits B-tree like properties from H5B */
+H5B_class_t H5B_ISTORE[1] = {{
+ H5B_ISTORE_ID, /*id */
+ sizeof(H5D_istore_key_t), /*sizeof_nkey */
+ H5D_istore_get_shared, /*get_shared */
+ H5D_istore_new_node, /*new */
+ H5D_istore_cmp2, /*cmp2 */
+ H5D_istore_cmp3, /*cmp3 */
+ H5D_istore_found, /*found */
+ H5D_istore_insert, /*insert */
+ FALSE, /*follow min branch? */
+ FALSE, /*follow max branch? */
+ H5D_istore_remove, /*remove */
+ H5D_istore_decode_key, /*decode */
+ H5D_istore_encode_key, /*encode */
+ H5D_istore_debug_key, /*debug */
+}};
+
+
+/*******************/
+/* Local Variables */
+/*******************/
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_get_shared
+ *
+ * Purpose: Returns the shared B-tree info for the specified UDATA.
+ *
+ * Return: Success: Pointer to the raw B-tree page for this dataset
+ *
+ * Failure: Can't fail
+ *
+ * Programmer: Quincey Koziol
+ * Monday, July 5, 2004
+ *
+ *-------------------------------------------------------------------------
+ */
+/* ARGSUSED */
+static H5RC_t *
+H5D_istore_get_shared(const H5F_t UNUSED *f, const void *_udata)
+{
+ const H5D_istore_ud0_t *udata = (const H5D_istore_ud0_t *) _udata;
+
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5D_istore_get_shared)
+
+ HDassert(udata);
+ HDassert(udata->mesg);
+ HDassert(udata->mesg->u.chunk.btree_shared);
+
+ /* Increment reference count on B-tree info */
+ H5RC_INC(udata->mesg->u.chunk.btree_shared);
+
+ /* Return the pointer to the ref-count object */
+ FUNC_LEAVE_NOAPI(udata->mesg->u.chunk.btree_shared)
+} /* end H5D_istore_get_shared() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_decode_key
+ *
+ * Purpose: Decodes a raw key into a native key for the B-tree
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Robb Matzke
+ * Friday, October 10, 1997
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_decode_key(const H5F_t UNUSED *f, const H5B_t *bt, const uint8_t *raw, void *_key)
+{
+ H5D_istore_key_t *key = (H5D_istore_key_t *) _key;
+ H5B_shared_t *shared; /* Pointer to shared B-tree info */
+ size_t ndims;
+ unsigned u;
+
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5D_istore_decode_key)
+
+ /* check args */
+ HDassert(f);
+ HDassert(bt);
+ shared = (H5B_shared_t *)H5RC_GET_OBJ(bt->rc_shared);
+ HDassert(shared);
+ HDassert(raw);
+ HDassert(key);
+ ndims = H5D_ISTORE_NDIMS(shared);
+ HDassert(ndims <= H5O_LAYOUT_NDIMS);
+
+ /* decode */
+ UINT32DECODE(raw, key->nbytes);
+ UINT32DECODE(raw, key->filter_mask);
+ for(u = 0; u < ndims; u++)
+ UINT64DECODE(raw, key->offset[u]);
+
+ FUNC_LEAVE_NOAPI(SUCCEED)
+} /* end H5D_istore_decode_key() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_encode_key
+ *
+ * Purpose: Encode a key from native format to raw format.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Robb Matzke
+ * Friday, October 10, 1997
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_encode_key(const H5F_t UNUSED *f, const H5B_t *bt, uint8_t *raw, void *_key)
+{
+ H5D_istore_key_t *key = (H5D_istore_key_t *) _key;
+ H5B_shared_t *shared; /* Pointer to shared B-tree info */
+ size_t ndims;
+ unsigned u;
+
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5D_istore_encode_key)
+
+ /* check args */
+ HDassert(f);
+ HDassert(bt);
+ shared = (H5B_shared_t *)H5RC_GET_OBJ(bt->rc_shared);
+ HDassert(shared);
+ HDassert(raw);
+ HDassert(key);
+ ndims = H5D_ISTORE_NDIMS(shared);
+ HDassert(ndims <= H5O_LAYOUT_NDIMS);
+
+ /* encode */
+ UINT32ENCODE(raw, key->nbytes);
+ UINT32ENCODE(raw, key->filter_mask);
+ for(u = 0; u < ndims; u++)
+ UINT64ENCODE(raw, key->offset[u]);
+
+ FUNC_LEAVE_NOAPI(SUCCEED)
+} /* end H5D_istore_encode_key() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_debug_key
+ *
+ * Purpose: Prints a key.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Robb Matzke
+ * Thursday, April 16, 1998
+ *
+ *-------------------------------------------------------------------------
+ */
+/* ARGSUSED */
+static herr_t
+H5D_istore_debug_key(FILE *stream, H5F_t UNUSED *f, hid_t UNUSED dxpl_id, int indent, int fwidth,
+ const void *_key, const void *_udata)
+{
+ const H5D_istore_key_t *key = (const H5D_istore_key_t *)_key;
+ const H5D_istore_ud0_t *udata = (const H5D_istore_ud0_t *)_udata;
+ unsigned u;
+
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5D_istore_debug_key)
+
+ HDassert(key);
+
+ HDfprintf(stream, "%*s%-*s %u bytes\n", indent, "", fwidth, "Chunk size:", (unsigned)key->nbytes);
+ HDfprintf(stream, "%*s%-*s 0x%08x\n", indent, "", fwidth, "Filter mask:", key->filter_mask);
+ HDfprintf(stream, "%*s%-*s {", indent, "", fwidth, "Logical offset:");
+ for(u = 0; u < udata->mesg->u.chunk.ndims; u++)
+ HDfprintf(stream, "%s%Hd", u?", ":"", key->offset[u]);
+ HDfputs("}\n", stream);
+
+ FUNC_LEAVE_NOAPI(SUCCEED)
+} /* end H5D_istore_debug_key() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_cmp2
+ *
+ * Purpose: Compares two keys sort of like strcmp(). The UDATA pointer
+ * is only to supply extra information not carried in the keys
+ * (in this case, the dimensionality) and is not compared
+ * against the keys.
+ *
+ * Return: Success: -1 if LT_KEY is less than RT_KEY;
+ * 1 if LT_KEY is greater than RT_KEY;
+ * 0 if LT_KEY and RT_KEY are equal.
+ *
+ * Failure: FAIL (same as LT_KEY<RT_KEY)
+ *
+ * Programmer: Robb Matzke
+ * Thursday, November 6, 1997
+ *
+ *-------------------------------------------------------------------------
+ */
+/* ARGSUSED */
+static int
+H5D_istore_cmp2(H5F_t UNUSED *f, hid_t UNUSED dxpl_id, void *_lt_key, void *_udata,
+ void *_rt_key)
+{
+ H5D_istore_key_t *lt_key = (H5D_istore_key_t *) _lt_key;
+ H5D_istore_key_t *rt_key = (H5D_istore_key_t *) _rt_key;
+ H5D_istore_ud0_t *udata = (H5D_istore_ud0_t *) _udata;
+ int ret_value;
+
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5D_istore_cmp2)
+
+ HDassert(lt_key);
+ HDassert(rt_key);
+ HDassert(udata);
+ HDassert(udata->mesg->u.chunk.ndims > 0 && udata->mesg->u.chunk.ndims <= H5O_LAYOUT_NDIMS);
+
+ /* Compare the offsets but ignore the other fields */
+ ret_value = H5V_vector_cmp_u(udata->mesg->u.chunk.ndims, lt_key->offset, rt_key->offset);
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_cmp2() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_cmp3
+ *
+ * Purpose: Compare the requested datum UDATA with the left and right
+ * keys of the B-tree.
+ *
+ * Return: Success: negative if the min_corner of UDATA is less
+ * than the min_corner of LT_KEY.
+ *
+ * positive if the min_corner of UDATA is
+ * greater than or equal the min_corner of
+ * RT_KEY.
+ *
+ * zero otherwise. The min_corner of UDATA is
+ * not necessarily contained within the address
+ * space represented by LT_KEY, but a key that
+ * would describe the UDATA min_corner address
+ * would fall lexicographically between LT_KEY
+ * and RT_KEY.
+ *
+ * Failure: FAIL (same as UDATA < LT_KEY)
+ *
+ * Programmer: Robb Matzke
+ * Wednesday, October 8, 1997
+ *
+ *-------------------------------------------------------------------------
+ */
+/* ARGSUSED */
+static int
+H5D_istore_cmp3(H5F_t UNUSED *f, hid_t UNUSED dxpl_id, void *_lt_key, void *_udata,
+ void *_rt_key)
+{
+ H5D_istore_key_t *lt_key = (H5D_istore_key_t *) _lt_key;
+ H5D_istore_key_t *rt_key = (H5D_istore_key_t *) _rt_key;
+ H5D_istore_ud0_t *udata = (H5D_istore_ud0_t *) _udata;
+ int ret_value = 0;
+
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5D_istore_cmp3)
+
+ HDassert(lt_key);
+ HDassert(rt_key);
+ HDassert(udata);
+ HDassert(udata->mesg->u.chunk.ndims > 0 && udata->mesg->u.chunk.ndims <= H5O_LAYOUT_NDIMS);
+
+ /* Special case for faster checks on 1-D chunks */
+ /* (Checking for ndims==2 because last dimension is the datatype size) */
+ /* The additional checking for the right key is necessary due to the */
+ /* slightly odd way the library initializes the right-most node in the */
+ /* indexed storage B-tree... */
+ /* (Dump the B-tree with h5debug to look at it) -QAK */
+ if(udata->mesg->u.chunk.ndims == 2) {
+ if(udata->offset[0] > rt_key->offset[0])
+ ret_value = 1;
+ else if(udata->offset[0] == rt_key->offset[0] &&
+ udata->offset[1] >= rt_key->offset[1])
+ ret_value = 1;
+ else if(udata->offset[0] < lt_key->offset[0])
+ ret_value = (-1);
+ } /* end if */
+ else {
+ if(H5V_vector_ge_u(udata->mesg->u.chunk.ndims, udata->offset, rt_key->offset))
+ ret_value = 1;
+ else if(H5V_vector_lt_u(udata->mesg->u.chunk.ndims, udata->offset, lt_key->offset))
+ ret_value = (-1);
+ } /* end else */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_cmp3() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_new_node
+ *
+ * Purpose: Adds a new entry to an i-storage B-tree. We can assume that
+ * the domain represented by UDATA doesn't intersect the domain
+ * already represented by the B-tree.
+ *
+ * Return: Success: Non-negative. The address of leaf is returned
+ * through the ADDR argument. It is also added
+ * to the UDATA.
+ *
+ * Failure: Negative
+ *
+ * Programmer: Robb Matzke
+ * Tuesday, October 14, 1997
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_new_node(H5F_t *f, hid_t dxpl_id, H5B_ins_t op,
+ void *_lt_key, void *_udata, void *_rt_key,
+ haddr_t *addr_p/*out*/)
+{
+ H5D_istore_key_t *lt_key = (H5D_istore_key_t *) _lt_key;
+ H5D_istore_key_t *rt_key = (H5D_istore_key_t *) _rt_key;
+ H5D_chunk_ud_t *udata = (H5D_chunk_ud_t *) _udata;
+ unsigned u;
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_new_node)
+
+ /* check args */
+ HDassert(f);
+ HDassert(lt_key);
+ HDassert(rt_key);
+ HDassert(udata);
+ HDassert(udata->common.mesg->u.chunk.ndims > 0 && udata->common.mesg->u.chunk.ndims < H5O_LAYOUT_NDIMS);
+ HDassert(addr_p);
+
+ /* Allocate new storage */
+ HDassert(udata->nbytes > 0);
+ H5_CHECK_OVERFLOW(udata->nbytes, uint32_t, hsize_t);
+ if(HADDR_UNDEF == (*addr_p = H5MF_alloc(f, H5FD_MEM_DRAW, dxpl_id, (hsize_t)udata->nbytes)))
+ HGOTO_ERROR(H5E_IO, H5E_CANTINIT, FAIL, "couldn't allocate new file storage")
+ udata->addr = *addr_p;
+
+ /*
+ * The left key describes the storage of the UDATA chunk being
+ * inserted into the tree.
+ */
+ lt_key->nbytes = udata->nbytes;
+ lt_key->filter_mask = udata->filter_mask;
+ for(u = 0; u < udata->common.mesg->u.chunk.ndims; u++)
+ lt_key->offset[u] = udata->common.offset[u];
+
+ /*
+ * The right key might already be present. If not, then add a zero-width
+ * chunk.
+ */
+ if(H5B_INS_LEFT != op) {
+ rt_key->nbytes = 0;
+ rt_key->filter_mask = 0;
+ for(u = 0; u < udata->common.mesg->u.chunk.ndims; u++) {
+ HDassert(udata->common.offset[u] + udata->common.mesg->u.chunk.dim[u] >
+ udata->common.offset[u]);
+ rt_key->offset[u] = udata->common.offset[u] + udata->common.mesg->u.chunk.dim[u];
+ } /* end if */
+ } /* end if */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_new_node() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_found
+ *
+ * Purpose: This function is called when the B-tree search engine has
+ * found the leaf entry that points to a chunk of storage that
+ * contains the beginning of the logical address space
+ * represented by UDATA. The LT_KEY is the left key (the one
+ * that describes the chunk) and RT_KEY is the right key (the
+ * one that describes the next or last chunk).
+ *
+ * Note: It's possible that the chunk isn't really found. For
+ * instance, in a sparse dataset the requested chunk might fall
+ * between two stored chunks in which case this function is
+ * called with the maximum stored chunk indices less than the
+ * requested chunk indices.
+ *
+ * Return: Non-negative (TRUE/FALSE) on success with information about the
+ * chunk returned through the UDATA argument. Negative on failure.
+ *
+ * Programmer: Robb Matzke
+ * Thursday, October 9, 1997
+ *
+ *-------------------------------------------------------------------------
+ */
+/* ARGSUSED */
+static htri_t
+H5D_istore_found(H5F_t UNUSED *f, hid_t UNUSED dxpl_id, haddr_t addr, const void *_lt_key,
+ void *_udata)
+{
+ H5D_chunk_ud_t *udata = (H5D_chunk_ud_t *) _udata;
+ const H5D_istore_key_t *lt_key = (const H5D_istore_key_t *) _lt_key;
+ unsigned u;
+ htri_t ret_value = TRUE; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5D_istore_found)
+
+ /* Check arguments */
+ HDassert(f);
+ HDassert(H5F_addr_defined(addr));
+ HDassert(udata);
+ HDassert(lt_key);
+
+ /* Is this *really* the requested chunk? */
+ for(u = 0; u < udata->common.mesg->u.chunk.ndims; u++)
+ if(udata->common.offset[u] >= lt_key->offset[u] + udata->common.mesg->u.chunk.dim[u])
+ HGOTO_DONE(FALSE)
+
+ /* Initialize return values */
+ HDassert(lt_key->nbytes > 0);
+ udata->addr = addr;
+ udata->nbytes = lt_key->nbytes;
+ udata->filter_mask = lt_key->filter_mask;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_found() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_insert
+ *
+ * Purpose: This function is called when the B-tree insert engine finds
+ * the node to use to insert new data. The UDATA argument
+ * points to a struct that describes the logical addresses being
+ * added to the file. This function allocates space for the
+ * data and returns information through UDATA describing a
+ * file chunk to receive (part of) the data.
+ *
+ * The LT_KEY is always the key describing the chunk of file
+ * memory at address ADDR. On entry, UDATA describes the logical
+ * addresses for which storage is being requested (through the
+ * `offset' and `size' fields). On return, UDATA describes the
+ * logical addresses contained in a chunk on disk.
+ *
+ * Return: Success: An insertion command for the caller, one of
+ * the H5B_INS_* constants. The address of the
+ * new chunk is returned through the NEW_NODE
+ * argument.
+ *
+ * Failure: H5B_INS_ERROR
+ *
+ * Programmer: Robb Matzke
+ * Thursday, October 9, 1997
+ *
+ *-------------------------------------------------------------------------
+ */
+/* ARGSUSED */
+static H5B_ins_t
+H5D_istore_insert(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_lt_key,
+ hbool_t *lt_key_changed,
+ void *_md_key, void *_udata, void *_rt_key,
+ hbool_t UNUSED *rt_key_changed,
+ haddr_t *new_node_p/*out*/)
+{
+ H5D_istore_key_t *lt_key = (H5D_istore_key_t *) _lt_key;
+ H5D_istore_key_t *md_key = (H5D_istore_key_t *) _md_key;
+ H5D_istore_key_t *rt_key = (H5D_istore_key_t *) _rt_key;
+ H5D_chunk_ud_t *udata = (H5D_chunk_ud_t *) _udata;
+ int cmp;
+ unsigned u;
+ H5B_ins_t ret_value;
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_insert)
+
+ /* check args */
+ HDassert(f);
+ HDassert(H5F_addr_defined(addr));
+ HDassert(lt_key);
+ HDassert(lt_key_changed);
+ HDassert(md_key);
+ HDassert(udata);
+ HDassert(rt_key);
+ HDassert(new_node_p);
+
+ cmp = H5D_istore_cmp3(f, dxpl_id, lt_key, udata, rt_key);
+ HDassert(cmp <= 0);
+
+ if(cmp < 0) {
+ /* Negative indices not supported yet */
+ HGOTO_ERROR(H5E_STORAGE, H5E_UNSUPPORTED, H5B_INS_ERROR, "internal error")
+
+ } else if(H5V_vector_eq_u(udata->common.mesg->u.chunk.ndims,
+ udata->common.offset, lt_key->offset) &&
+ lt_key->nbytes > 0) {
+ /*
+ * Already exists. If the new size is not the same as the old size
+ * then we should reallocate storage.
+ */
+ if(lt_key->nbytes != udata->nbytes) {
+/* Currently, the old chunk data is "thrown away" after the space is reallocated,
+ * so avoid data copy in H5MF_realloc() call by just free'ing the space and
+ * allocating new space.
+ *
+ * This should keep the file smaller also, by freeing the space and then
+ * allocating new space, instead of vice versa (in H5MF_realloc).
+ *
+ * QAK - 11/19/2002
+ */
+#ifdef OLD_WAY
+ if(HADDR_UNDEF == (*new_node_p = H5MF_realloc(f, H5FD_MEM_DRAW, addr,
+ (hsize_t)lt_key->nbytes, (hsize_t)udata->nbytes)))
+ HGOTO_ERROR(H5E_STORAGE, H5E_NOSPACE, H5B_INS_ERROR, "unable to reallocate chunk storage")
+#else /* OLD_WAY */
+ H5_CHECK_OVERFLOW(lt_key->nbytes, uint32_t, hsize_t);
+ if(H5MF_xfree(f, H5FD_MEM_DRAW, dxpl_id, addr, (hsize_t)lt_key->nbytes) < 0)
+ HGOTO_ERROR(H5E_STORAGE, H5E_CANTFREE, H5B_INS_ERROR, "unable to free chunk")
+ H5_CHECK_OVERFLOW(udata->nbytes, uint32_t, hsize_t);
+ if(HADDR_UNDEF == (*new_node_p = H5MF_alloc(f, H5FD_MEM_DRAW, dxpl_id, (hsize_t)udata->nbytes)))
+ HGOTO_ERROR(H5E_STORAGE, H5E_NOSPACE, H5B_INS_ERROR, "unable to reallocate chunk")
+#endif /* OLD_WAY */
+ lt_key->nbytes = udata->nbytes;
+ lt_key->filter_mask = udata->filter_mask;
+ *lt_key_changed = TRUE;
+ udata->addr = *new_node_p;
+ ret_value = H5B_INS_CHANGE;
+ } else {
+ udata->addr = addr;
+ ret_value = H5B_INS_NOOP;
+ }
+
+ } else if (H5V_hyper_disjointp(udata->common.mesg->u.chunk.ndims,
+ lt_key->offset, udata->common.mesg->u.chunk.dim,
+ udata->common.offset, udata->common.mesg->u.chunk.dim)) {
+ HDassert(H5V_hyper_disjointp(udata->common.mesg->u.chunk.ndims,
+ rt_key->offset, udata->common.mesg->u.chunk.dim,
+ udata->common.offset, udata->common.mesg->u.chunk.dim));
+ /*
+ * Split this node, inserting the new new node to the right of the
+ * current node. The MD_KEY is where the split occurs.
+ */
+ md_key->nbytes = udata->nbytes;
+ md_key->filter_mask = udata->filter_mask;
+ for(u = 0; u < udata->common.mesg->u.chunk.ndims; u++) {
+ HDassert(0 == udata->common.offset[u] % udata->common.mesg->u.chunk.dim[u]);
+ md_key->offset[u] = udata->common.offset[u];
+ } /* end for */
+
+ /*
+ * Allocate storage for the new chunk
+ */
+ H5_CHECK_OVERFLOW(udata->nbytes, uint32_t, hsize_t);
+ if(HADDR_UNDEF == (*new_node_p = H5MF_alloc(f, H5FD_MEM_DRAW, dxpl_id, (hsize_t)udata->nbytes)))
+ HGOTO_ERROR(H5E_STORAGE, H5E_NOSPACE, H5B_INS_ERROR, "file allocation failed")
+ udata->addr = *new_node_p;
+ ret_value = H5B_INS_RIGHT;
+
+ } else {
+ HGOTO_ERROR(H5E_IO, H5E_UNSUPPORTED, H5B_INS_ERROR, "internal error")
+ }
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_insert() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_remove
+ *
+ * Purpose: Removes chunks that are no longer necessary in the B-tree.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Robb Matzke
+ * Pedro Vicente, pvn@ncsa.uiuc.edu
+ * March 28, 2002
+ *
+ *-------------------------------------------------------------------------
+ */
+/* ARGSUSED */
+static H5B_ins_t
+H5D_istore_remove(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_lt_key /*in,out */ ,
+ hbool_t *lt_key_changed /*out */ ,
+ void UNUSED * _udata /*in,out */ ,
+ void UNUSED * _rt_key /*in,out */ ,
+ hbool_t *rt_key_changed /*out */ )
+{
+ H5D_istore_key_t *lt_key = (H5D_istore_key_t *)_lt_key;
+ H5B_ins_t ret_value=H5B_INS_REMOVE; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_remove)
+
+ /* Remove raw data chunk from file */
+ H5_CHECK_OVERFLOW(lt_key->nbytes, uint32_t, hsize_t);
+ if(H5MF_xfree(f, H5FD_MEM_DRAW, dxpl_id, addr, (hsize_t)lt_key->nbytes) < 0)
+ HGOTO_ERROR(H5E_STORAGE, H5E_CANTFREE, H5B_INS_ERROR, "unable to free chunk")
+
+ /* Mark keys as unchanged */
+ *lt_key_changed = FALSE;
+ *rt_key_changed = FALSE;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_remove() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_shared_create
+ *
+ * Purpose: Create & initialize B-tree shared info
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * Monday, September 27, 2004
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_shared_create(const H5F_t *f, H5O_layout_t *layout)
+{
+ H5B_shared_t *shared; /* Shared B-tree node info */
+ size_t sizeof_rkey; /* Size of raw (disk) key */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_shared_create)
+
+ /* Set the raw key size */
+ sizeof_rkey = 4 + /*storage size */
+ 4 + /*filter mask */
+ layout->u.chunk.ndims * 8; /*dimension indices */
+
+ /* Allocate & initialize global info for the shared structure */
+ if(NULL == (shared = H5B_shared_new(f, H5B_ISTORE, sizeof_rkey)))
+ HGOTO_ERROR(H5E_BTREE, H5E_NOSPACE, FAIL, "memory allocation failed for shared B-tree info")
+
+ /* Set up the "local" information for this dataset's chunks */
+ /* <none> */
+
+ /* Make shared B-tree info reference counted */
+ if(NULL == (layout->u.chunk.btree_shared = H5RC_create(shared, H5B_shared_free)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't create ref-count wrapper for shared B-tree info")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_shared_create() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_idx_init
+ *
+ * Purpose: Initialize the indexing information for a dataset.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Robb Matzke
+ * Monday, May 18, 1998
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_idx_init(const H5D_chk_idx_info_t *idx_info)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_idx_init)
+
+ /* Check args */
+ HDassert(idx_info);
+ HDassert(idx_info->f);
+ HDassert(idx_info->layout);
+
+ /* Allocate the shared structure */
+ if(H5D_istore_shared_create(idx_info->f, idx_info->layout) < 0)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't create wrapper for shared B-tree info")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_idx_init() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_idx_create
+ *
+ * Purpose: Creates a new indexed-storage B-tree and initializes the
+ * layout struct with information about the storage. The
+ * struct should be immediately written to the object header.
+ *
+ * This function must be called before passing LAYOUT to any of
+ * the other indexed storage functions!
+ *
+ * Return: Non-negative on success (with the LAYOUT argument initialized
+ * and ready to write to an object header). Negative on failure.
+ *
+ * Programmer: Robb Matzke
+ * Tuesday, October 21, 1997
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_idx_create(const H5D_chk_idx_info_t *idx_info)
+{
+ H5D_istore_ud0_t udata; /* User data for B-tree callback */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_idx_create)
+
+ /* Check args */
+ HDassert(idx_info);
+ HDassert(idx_info->f);
+ HDassert(idx_info->layout);
+
+ /* Initialize "user" data for B-tree callbacks, etc. */
+ udata.mesg = idx_info->layout;
+
+ /* Create the v1 B-tree for the chunk index */
+ if(H5B_create(idx_info->f, idx_info->dxpl_id, H5B_ISTORE, &udata, &(idx_info->layout->u.chunk.addr)/*out*/) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create B-tree")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_idx_create() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_idx_insert
+ *
+ * Purpose: Create the chunk it if it doesn't exist, or reallocate the
+ * chunk if its size changed.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Robb Matzke
+ * Thursday, May 21, 1998
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_idx_insert)
+
+ HDassert(idx_info);
+ HDassert(idx_info->f);
+ HDassert(idx_info->layout);
+ HDassert(udata);
+
+ /*
+ * Create the chunk it if it doesn't exist, or reallocate the chunk if
+ * its size changed.
+ */
+ if(H5B_insert(idx_info->f, idx_info->dxpl_id, H5B_ISTORE, idx_info->layout->u.chunk.addr, udata) < 0)
+ HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "unable to allocate chunk")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5D_istore_idx_insert() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_idx_get_addr
+ *
+ * Purpose: Get the file address of a chunk if file space has been
+ * assigned. Save the retrieved information in the udata
+ * supplied.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Albert Cheng
+ * June 27, 1998
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_idx_get_addr)
+
+ HDassert(idx_info);
+ HDassert(idx_info->f);
+ HDassert(idx_info->layout);
+ HDassert(idx_info->layout->u.chunk.ndims > 0);
+ HDassert(udata);
+
+ /* Go get the chunk information from the B-tree */
+ if(H5B_find(idx_info->f, idx_info->dxpl_id, H5B_ISTORE, idx_info->layout->u.chunk.addr, udata) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get chunk info")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5D_istore_idx_get_addr() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_idx_iterate_cb
+ *
+ * Purpose: Translate the B-tree specific chunk record into a generic
+ * form and make the callback to the generic chunk callback
+ * routine.
+ *
+ * Return: Success: Non-negative
+ * Failure: Negative
+ *
+ * Programmer: Quincey Koziol
+ * Tuesday, May 20, 2008
+ *
+ *-------------------------------------------------------------------------
+ */
+/* ARGSUSED */
+static int
+H5D_istore_idx_iterate_cb(H5F_t UNUSED *f, hid_t UNUSED dxpl_id,
+ const void *_lt_key, haddr_t addr, const void UNUSED *_rt_key,
+ void *_udata)
+{
+ H5D_istore_it_ud_t *udata = (H5D_istore_it_ud_t *)_udata; /* User data */
+ const H5D_istore_key_t *lt_key = (const H5D_istore_key_t *)_lt_key; /* B-tree key for chunk */
+ H5D_chunk_rec_t chunk_rec; /* Generic chunk record for callback */
+ int ret_value; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_idx_iterate_cb)
+
+ /* Sanity check for memcpy() */
+ HDcompile_assert(offsetof(H5D_chunk_rec_t, nbytes) == offsetof(H5D_istore_key_t, nbytes));
+ HDcompile_assert(sizeof(chunk_rec.nbytes) == sizeof(lt_key->nbytes));
+ HDcompile_assert(offsetof(H5D_chunk_rec_t, offset) == offsetof(H5D_istore_key_t, offset));
+ HDcompile_assert(sizeof(chunk_rec.offset) == sizeof(lt_key->offset));
+ HDcompile_assert(offsetof(H5D_chunk_rec_t, filter_mask) == offsetof(H5D_istore_key_t, filter_mask));
+ HDcompile_assert(sizeof(chunk_rec.filter_mask) == sizeof(lt_key->filter_mask));
+
+ /* Compose generic chunk record for callback */
+ HDmemcpy(&chunk_rec, lt_key, sizeof(*lt_key));
+ chunk_rec.chunk_addr = addr;
+
+ /* Make "generic chunk" callback */
+ if((ret_value = (udata->cb)(&chunk_rec, udata->udata)) < 0)
+ HERROR(H5E_DATASET, H5E_CALLBACK, "failure in generic chunk iterator callback");
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5D_istore_idx_iterate_cb() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_idx_iterate
+ *
+ * Purpose: Iterate over the chunks in the B-tree index, making a callback
+ * for each one.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * Tuesday, May 20, 2008
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+H5D_istore_idx_iterate(const H5D_chk_idx_info_t *idx_info,
+ H5D_chunk_cb_func_t chunk_cb, void *chunk_udata)
+{
+ H5D_istore_it_ud_t udata; /* User data for B-tree iterator callback */
+ int ret_value; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_idx_iterate)
+
+ HDassert(idx_info);
+ HDassert(idx_info->f);
+ HDassert(idx_info->layout);
+ HDassert(chunk_cb);
+ HDassert(chunk_udata);
+
+ /* Initialize userdata */
+ HDmemset(&udata, 0, sizeof udata);
+ udata.common.mesg = idx_info->layout;
+ udata.cb = chunk_cb;
+ udata.udata = chunk_udata;
+
+ /* Iterate over existing chunks */
+ if((ret_value = H5B_iterate(idx_info->f, idx_info->dxpl_id, H5B_ISTORE, idx_info->layout->u.chunk.addr, H5D_istore_idx_iterate_cb, &udata)) < 0)
+ HERROR(H5E_DATASET, H5E_BADITER, "unable to iterate over chunk B-tree");
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_idx_iterate() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_idx_remove
+ *
+ * Purpose: Remove chunk from v1 B-tree index.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * Thursday, May 22, 2008
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_idx_remove(const H5D_chk_idx_info_t *idx_info, H5D_chunk_common_ud_t *udata)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_idx_remove)
+
+ HDassert(idx_info);
+ HDassert(idx_info->f);
+ HDassert(idx_info->layout);
+ HDassert(udata);
+
+ /* Remove the chunk from the v1 B-tree index and release the space for the
+ * chunk (in the B-tree callback).
+ */
+ if(H5B_remove(idx_info->f, idx_info->dxpl_id, H5B_ISTORE, idx_info->layout->u.chunk.addr, udata) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTDELETE, FAIL, "unable to remove chunk entry")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5D_istore_idx_remove() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_idx_delete
+ *
+ * Purpose: Delete v1 B-tree index and raw data storage for entire dataset
+ * (i.e. all chunks)
+ *
+ * Return: Success: Non-negative
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Thursday, March 20, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_idx_delete(const H5D_chk_idx_info_t *idx_info)
+{
+ H5O_layout_t tmp_layout; /* Local copy of layout info */
+ H5D_istore_ud0_t udata; /* User data for B-tree iterator call */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_idx_delete)
+
+ /* Sanity checks */
+ HDassert(idx_info);
+ HDassert(idx_info->f);
+ HDassert(idx_info->layout);
+ HDassert(H5F_addr_defined(idx_info->layout->u.chunk.addr));
+
+ /* Set up user data for B-tree deletion */
+ HDmemset(&udata, 0, sizeof udata);
+ tmp_layout = *idx_info->layout;
+ udata.mesg = &tmp_layout;
+
+ /* Set up the shared structure */
+ if(H5D_istore_shared_create(idx_info->f, &tmp_layout) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create wrapper for shared B-tree info")
+
+ /* Delete entire B-tree */
+ if(H5B_delete(idx_info->f, idx_info->dxpl_id, H5B_ISTORE, tmp_layout.u.chunk.addr, &udata) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTDELETE, FAIL, "unable to delete chunk B-tree")
+
+ /* Free the raw B-tree node buffer */
+ if(NULL == tmp_layout.u.chunk.btree_shared)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "ref-counted page nil")
+ if(H5RC_DEC(tmp_layout.u.chunk.btree_shared) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "unable to decrement ref-counted page")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_idx_delete() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_idx_copy_setup
+ *
+ * Purpose: Set up any necessary information for copying chunks
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * Thursday, May 29, 2008
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_idx_copy_setup(const H5D_chk_idx_info_t *idx_info_src,
+ const H5D_chk_idx_info_t *idx_info_dst)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_idx_copy_setup)
+
+ HDassert(idx_info_src);
+ HDassert(idx_info_src->f);
+ HDassert(idx_info_src->layout);
+ HDassert(idx_info_dst);
+ HDassert(idx_info_dst->f);
+ HDassert(idx_info_dst->layout);
+ HDassert(!H5F_addr_defined(idx_info_dst->layout->u.chunk.addr));
+
+ /* Create shared B-tree info for each file */
+ if(H5D_istore_shared_create(idx_info_src->f, idx_info_src->layout) < 0)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't create wrapper for source shared B-tree info")
+ if(H5D_istore_shared_create(idx_info_dst->f, idx_info_dst->layout) < 0)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't create wrapper for destination shared B-tree info")
+
+ /* Create the root of the B-tree that describes chunked storage in the dest. file */
+ if(H5D_istore_idx_create(idx_info_dst) < 0)
+ HGOTO_ERROR(H5E_IO, H5E_CANTINIT, FAIL, "unable to initialize chunked storage")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_idx_copy_setup() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_idx_copy_shutdown
+ *
+ * Purpose: Shutdown any information from copying chunks
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * Thursday, May 29, 2008
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_idx_copy_shutdown(H5O_layout_t *layout_src, H5O_layout_t *layout_dst)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_idx_copy_shutdown)
+
+ HDassert(layout_src);
+ HDassert(layout_dst);
+
+ /* Decrement refcount on shared B-tree info */
+ if(H5RC_DEC(layout_src->u.chunk.btree_shared) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTDEC, FAIL, "unable to decrement ref-counted page")
+ if(H5RC_DEC(layout_dst->u.chunk.btree_shared) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTDEC, FAIL, "unable to decrement ref-counted page")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_idx_copy_shutdown() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_idx_size
+ *
+ * Purpose: Retrieve the amount of B-tree storage for chunked dataset
+ *
+ * Return: Success: Non-negative
+ * Failure: negative
+ *
+ * Programmer: Vailin Choi
+ * June 8, 2007
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D_istore_idx_size(const H5D_chk_idx_info_t *idx_info, hsize_t *index_size)
+{
+ H5D_istore_ud0_t udata; /* User-data for loading istore nodes */
+ H5B_info_t bt_info; /* B-tree info */
+ hbool_t shared_init = FALSE; /* Whether shared B-tree info is initialized */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(H5D_istore_idx_size, FAIL)
+
+ /* Check args */
+ HDassert(idx_info);
+ HDassert(idx_info->f);
+ HDassert(idx_info->layout);
+ HDassert(index_size);
+
+ /* Initialize the shared info for the B-tree traversal */
+ if(H5D_istore_shared_create(idx_info->f, idx_info->layout) < 0)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't create wrapper for shared B-tree info")
+ shared_init = TRUE;
+
+ /* Initialize istore node user-data */
+ HDmemset(&udata, 0, sizeof udata);
+ udata.mesg = idx_info->layout;
+
+ /* Get metadata information for B-tree */
+ if(H5B_get_info(idx_info->f, idx_info->dxpl_id, H5B_ISTORE, idx_info->layout->u.chunk.addr, &bt_info, NULL, &udata) < 0)
+ HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, FAIL, "unable to iterate over chunk B-tree")
+
+ /* Set the size of the B-tree */
+ *index_size = bt_info.size;
+
+done:
+ if(shared_init) {
+ if(idx_info->layout->u.chunk.btree_shared == NULL)
+ HDONE_ERROR(H5E_IO, H5E_CANTFREE, FAIL, "ref-counted page nil")
+ if(H5RC_DEC(idx_info->layout->u.chunk.btree_shared) < 0)
+ HDONE_ERROR(H5E_IO, H5E_CANTFREE, FAIL, "unable to decrement ref-counted page")
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_idx_size() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_idx_dest
+ *
+ * Purpose: Release indexing information in memory.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Robb Matzke
+ * Thursday, May 21, 1998
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D_istore_idx_dest(const H5D_chk_idx_info_t *idx_info)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5D_istore_idx_dest)
+
+ HDassert(idx_info);
+ HDassert(idx_info->f);
+ HDassert(idx_info->layout);
+
+ /* Free the raw B-tree node buffer */
+ if(idx_info->layout->u.chunk.btree_shared == NULL)
+ HGOTO_ERROR(H5E_IO, H5E_CANTFREE, FAIL, "ref-counted page nil")
+ if(H5RC_DEC(idx_info->layout->u.chunk.btree_shared) < 0)
+ HGOTO_ERROR(H5E_IO, H5E_CANTFREE, FAIL, "unable to decrement ref-counted page")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_idx_dest() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_istore_debug
+ *
+ * Purpose: Debugs a B-tree node for indexed raw data storage.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Robb Matzke
+ * Thursday, April 16, 1998
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D_istore_debug(H5F_t *f, hid_t dxpl_id, haddr_t addr, FILE * stream, int indent,
+ int fwidth, unsigned ndims)
+{
+ H5D_istore_ud0_t udata; /* B-tree user data */
+ H5O_layout_t layout; /* Layout information for B-tree callback */
+ hbool_t shared_init = FALSE; /* Whether B-tree shared info is initialized */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(H5D_istore_debug, FAIL)
+
+ /* Set up "fake" layout info */
+ layout.u.chunk.ndims = ndims;
+
+ /* Allocate the shared structure */
+ if(H5D_istore_shared_create(f, &layout) < 0)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't create wrapper for shared B-tree info")
+ shared_init = TRUE;
+
+ /* Set up B-tree user data */
+ HDmemset(&udata, 0, sizeof udata);
+ udata.mesg = &layout;
+
+ (void)H5B_debug(f, dxpl_id, addr, stream, indent, fwidth, H5B_ISTORE, &udata);
+
+done:
+ if(shared_init) {
+ /* Free the raw B-tree node buffer */
+ if(layout.u.chunk.btree_shared == NULL)
+ HDONE_ERROR(H5E_IO, H5E_CANTFREE, FAIL, "ref-counted page nil")
+ if(H5RC_DEC(layout.u.chunk.btree_shared) < 0)
+ HDONE_ERROR(H5E_IO, H5E_CANTFREE, FAIL, "unable to decrement ref-counted page")
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_istore_debug() */
+