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author | Quincey Koziol <koziol@hdfgroup.org> | 2008-06-03 19:44:12 (GMT) |
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committer | Quincey Koziol <koziol@hdfgroup.org> | 2008-06-03 19:44:12 (GMT) |
commit | 771bae88881f4ae8102c9553fd10e0938aa3094c (patch) | |
tree | 62ac7bce1e109e1b0b8899ea14da603a2b6e6ffc /src/H5Dcontig.c | |
parent | d36f67c0e27a39a54f870c4f917ab2c1754e80d6 (diff) | |
download | hdf5-771bae88881f4ae8102c9553fd10e0938aa3094c.zip hdf5-771bae88881f4ae8102c9553fd10e0938aa3094c.tar.gz hdf5-771bae88881f4ae8102c9553fd10e0938aa3094c.tar.bz2 |
[svn-r15131] Description:
Finish omnibus chunked dataset I/O refactoring, to separate general
actions on chunked datasets from actions that are specific to using the v1
B-tree index.
Cleaned up a few bugs and added some additional tests also.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.5.2 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Diffstat (limited to 'src/H5Dcontig.c')
-rw-r--r-- | src/H5Dcontig.c | 70 |
1 files changed, 65 insertions, 5 deletions
diff --git a/src/H5Dcontig.c b/src/H5Dcontig.c index 1a3fda5..14ad520 100644 --- a/src/H5Dcontig.c +++ b/src/H5Dcontig.c @@ -61,6 +61,8 @@ /********************/ /* Layout operation callbacks */ +static herr_t H5D_contig_new(H5F_t *f, hid_t dxpl_id, H5D_t *dset, + const H5P_genplist_t *dc_plist); static herr_t H5D_contig_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t *cm); @@ -76,6 +78,7 @@ static herr_t H5D_contig_write_one(H5D_io_info_t *io_info, hsize_t offset, /* Contiguous storage layout I/O ops */ const H5D_layout_ops_t H5D_LOPS_CONTIG[1] = {{ + H5D_contig_new, H5D_contig_io_init, H5D_contig_read, H5D_contig_write, @@ -102,7 +105,7 @@ H5FL_BLK_EXTERN(type_conv); /*------------------------------------------------------------------------- - * Function: H5D_contig_create + * Function: H5D_contig_alloc * * Purpose: Allocate file space for a contiguously stored dataset * @@ -114,11 +117,11 @@ H5FL_BLK_EXTERN(type_conv); *------------------------------------------------------------------------- */ herr_t -H5D_contig_create(H5F_t *f, hid_t dxpl_id, H5O_layout_t *layout /*out */ ) +H5D_contig_alloc(H5F_t *f, hid_t dxpl_id, H5O_layout_t *layout /*out */ ) { herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI(H5D_contig_create, FAIL) + FUNC_ENTER_NOAPI(H5D_contig_alloc, FAIL) /* check args */ HDassert(f); @@ -130,7 +133,7 @@ H5D_contig_create(H5F_t *f, hid_t dxpl_id, H5O_layout_t *layout /*out */ ) done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5D_contig_create */ +} /* end H5D_contig_alloc */ /*------------------------------------------------------------------------- @@ -355,6 +358,63 @@ H5D_contig_get_addr(const H5D_t *dset) /*------------------------------------------------------------------------- + * Function: H5D_contig_new + * + * Purpose: Constructs new contiguous layout information for dataset + * + * Return: Non-negative on success/Negative on failure + * + * Programmer: Quincey Koziol + * Thursday, May 22, 2008 + * + *------------------------------------------------------------------------- + */ +/* ARGSUSED */ +static herr_t +H5D_contig_new(H5F_t *f, hid_t UNUSED dxpl_id, H5D_t *dset, + const H5P_genplist_t UNUSED *dc_plist) +{ + const H5T_t *type = dset->shared->type; /* Convenience pointer to dataset's datatype */ + hssize_t tmp_size; /* Temporary holder for raw data size */ + hsize_t dim[H5O_LAYOUT_NDIMS]; /* Current size of data in elements */ + hsize_t max_dim[H5O_LAYOUT_NDIMS]; /* Maximum size of data in elements */ + int ndims; /* Rank of dataspace */ + int i; /* Local index variable */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI_NOINIT(H5D_contig_new) + + /* Sanity checks */ + HDassert(f); + HDassert(dset); + + /* + * The maximum size of the dataset cannot exceed the storage size. + * Also, only the slowest varying dimension of a simple data space + * can be extendible (currently only for external data storage). + */ + dset->shared->layout.u.contig.addr = HADDR_UNDEF; /* Initialize to no address */ + + /* Check for invalid dataset dimensions */ + if((ndims = H5S_get_simple_extent_dims(dset->shared->space, dim, max_dim)) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize contiguous storage") + for(i = 0; i < ndims; i++) + if(max_dim[i] > dim[i]) + HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "extendible contiguous non-external dataset") + + /* Compute the total size of dataset */ + tmp_size = H5S_GET_EXTENT_NPOINTS(dset->shared->space) * H5T_get_size(type); + H5_ASSIGN_OVERFLOW(dset->shared->layout.u.contig.size, tmp_size, hssize_t, hsize_t); + + /* Get the sieve buffer size for this dataset */ + dset->shared->cache.contig.sieve_buf_size = H5F_SIEVE_BUF_SIZE(f); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5D_contig_new() */ + + +/*------------------------------------------------------------------------- * Function: H5D_contig_io_init * * Purpose: Performs initialization before any sort of I/O on the raw data @@ -1137,7 +1197,7 @@ H5D_contig_copy(H5F_t *f_src, const H5O_layout_t *layout_src, H5F_t *f_dst, HDassert(dt_src); /* Allocate space for destination raw data */ - if(H5D_contig_create(f_dst, dxpl_id, layout_dst) < 0) + if(H5D_contig_alloc(f_dst, dxpl_id, layout_dst) < 0) HGOTO_ERROR(H5E_IO, H5E_CANTINIT, FAIL, "unable to allocate contiguous storage") /* Set up number of bytes to copy, and initial buffer size */ |