Merge pull request #2203 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:1.10/master to 1.10/masterhdf5-1_10_6

* commit 'e0fa36bfe008c03365ce8ea94d705f8fdebccdf0': (166 commits)
  Update release date strings in README.txt and release_docs/RELEASE.txt
  Add release note about using ompio instead of romio when collective writes fail with OpenMPI.
  Fixed typos, grammatical errors, etc. Expanded entry for S3 and HDFS VFDs. Moved Mac 10.11 and 10.12 from Supported Platforms to More Platforms Tested.
  Add qualification to RELEASE.txt regarding performance improvements
  Standalone doesn't use h5test implementation.
  Add missing note
  Update COPYING file with new HDF5 license.
  Update bin/config.guess and config.sub to current version available from git.savannah.gnu.org.
  Fix include to correct memory calls - big-endian issue.
  Revert BLDLIBDIR value in junit.sh.in.
  Corrections to CMake functions
  Update version for HDF5 1.10.6 release. Remove autom4te.cache directory that shouldn't have been added.
  Remove duplicate instance
  Fix merge issue
  HDFFV-10979 - fix global name clash
  Correct clang search and java include
  Latest date first in RELEASE.txt
  Update RELEASE.txt with performance improvements and Steven Varga's bugfix.
  Update version numbers for shared lib files according to api compatibility report.
  Created hdf5_1_10_6 branch for HDF5 1.10.6 release preparation. Set version to 1.10.6-pre1. Switched default  maintainer mode to disabled and default build mode to production. Added files produced by autogen.sh to commit except for src/H5config.h.in~ and src/H5public.h~.
  ...

1 files changed, 228 insertions, 228 deletions

diff --git a/src/H5Dfarray.c b/src/H5Dfarray.c
index 372ae26..5972f10 100644
--- a/src/H5Dfarray.c
+++ b/src/H5Dfarray.c
@@ -11,12 +11,12 @@
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
-/* Programmer: 	Vailin Choi <vchoi@hdfgroup.org>
- *	       	Thursday, April 30, 2009
+/* Programmer:     Vailin Choi <vchoi@hdfgroup.org>
+ *               Thursday, April 30, 2009
  *
- * Purpose:	Fixed array indexed (chunked) I/O functions.  
- *		The chunk coordinate is mapped as an index into an array of 
- *		disk addresses for the chunks.
+ * Purpose:    Fixed array indexed (chunked) I/O functions.
+ *        The chunk coordinate is mapped as an index into an array of
+ *        disk addresses for the chunks.
  *
  */
 
@@ -30,13 +30,13 @@
 /***********/
 /* Headers */
 /***********/
-#include "H5private.h"		/* Generic Functions			*/
-#include "H5Dpkg.h"		/* Datasets				*/
-#include "H5Eprivate.h"		/* Error handling		  	*/
-#include "H5FAprivate.h"	/* Fixed arrays		  		*/
-#include "H5FLprivate.h"	/* Free Lists                           */
-#include "H5MFprivate.h"	/* File space management		*/
-#include "H5VMprivate.h"         /* Vector functions			*/
+#include "H5private.h"        /* Generic Functions            */
+#include "H5Dpkg.h"        /* Datasets                */
+#include "H5Eprivate.h"        /* Error handling              */
+#include "H5FAprivate.h"    /* Fixed arrays                  */
+#include "H5FLprivate.h"    /* Free Lists                           */
+#include "H5MFprivate.h"    /* File space management        */
+#include "H5VMprivate.h"         /* Vector functions            */
 
 
 /****************/
@@ -210,16 +210,16 @@ H5FL_DEFINE_STATIC(H5D_farray_ctx_t);
 /* Declare a free list to manage the H5D_farray_ctx_ud_t struct */
 H5FL_DEFINE_STATIC(H5D_farray_ctx_ud_t);
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_crt_context
+ * Function:    H5D__farray_crt_context
  *
- * Purpose:	Create context for callbacks
+ * Purpose:    Create context for callbacks
  *
- * Return:	Success:	non-NULL
- *		Failure:	NULL
+ * Return:    Success:    non-NULL
+ *        Failure:    NULL
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -259,16 +259,16 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5D__farray_crt_context() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_dst_context
+ * Function:    H5D__farray_dst_context
  *
- * Purpose:	Destroy context for callbacks
+ * Purpose:    Destroy context for callbacks
  *
- * Return:	Success:	non-NULL
- *		Failure:	NULL
+ * Return:    Success:    non-NULL
+ *        Failure:    NULL
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -289,16 +289,16 @@ H5D__farray_dst_context(void *_ctx)
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_dst_context() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_fill
+ * Function:    H5D__farray_fill
  *
- * Purpose:	Fill "missing elements" in block of elements
+ * Purpose:    Fill "missing elements" in block of elements
  *
- * Return:	Success:	non-negative
- *		Failure:	negative
+ * Return:    Success:    non-negative
+ *        Failure:    negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -319,16 +319,16 @@ H5D__farray_fill(void *nat_blk, size_t nelmts)
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_fill() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_encode
+ * Function:    H5D__farray_encode
  *
- * Purpose:	Encode an element from "native" to "raw" form
+ * Purpose:    Encode an element from "native" to "raw" form
  *
- * Return:	Success:	non-negative
- *		Failure:	negative
+ * Return:    Success:    non-negative
+ *        Failure:    negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -363,16 +363,16 @@ H5D__farray_encode(void *raw, const void *_elmt, size_t nelmts, void *_ctx)
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_encode() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_decode
+ * Function:    H5D__farray_decode
  *
- * Purpose:	Decode an element from "raw" to "native" form
+ * Purpose:    Decode an element from "raw" to "native" form
  *
- * Return:	Success:	non-negative
- *		Failure:	negative
+ * Return:    Success:    non-negative
+ *        Failure:    negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -407,16 +407,16 @@ H5D__farray_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx)
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_decode() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_debug
+ * Function:    H5D__farray_debug
  *
- * Purpose:	Display an element for debugging
+ * Purpose:    Display an element for debugging
  *
- * Return:	Success:	non-negative
- *		Failure:	negative
+ * Return:    Success:    non-negative
+ *        Failure:    negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -434,32 +434,32 @@ H5D__farray_debug(FILE *stream, int indent, int fwidth, hsize_t idx,
     HDassert(elmt);
 
     /* Print element */
-    sprintf(temp_str, "Element #%llu:", (unsigned long long)idx);
+    HDsprintf(temp_str, "Element #%llu:", (unsigned long long)idx);
     HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth, temp_str,
         *(const haddr_t *)elmt);
 
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_debug() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_crt_dbg_context
+ * Function:    H5D__farray_crt_dbg_context
  *
- * Purpose:	Create context for debugging callback
- *		(get the layout message in the specified object header)
+ * Purpose:    Create context for debugging callback
+ *        (get the layout message in the specified object header)
  *
- * Return:	Success:	non-NULL
- *		Failure:	NULL
+ * Return:    Success:    non-NULL
+ *        Failure:    NULL
  *
- * Programmer:	Vailin Choi
- *		5th August, 2009
+ * Programmer:    Vailin Choi
+ *        5th August, 2009
  *
  *-------------------------------------------------------------------------
  */
 static void *
 H5D__farray_crt_dbg_context(H5F_t *f, haddr_t obj_addr)
 {
-    H5D_farray_ctx_ud_t	*dbg_ctx = NULL;   /* Context for fixed array callback */
+    H5D_farray_ctx_ud_t    *dbg_ctx = NULL;   /* Context for fixed array callback */
     H5O_loc_t obj_loc;          /* Pointer to an object's location */
     hbool_t obj_opened = FALSE; /* Flag to indicate that the object header was opened */
     H5O_layout_t layout;        /* Layout message */
@@ -516,25 +516,25 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5D__farray_crt_dbg_context() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_dst_dbg_context
+ * Function:    H5D__farray_dst_dbg_context
  *
- * Purpose:	Destroy context for debugging callback
- *		(free the layout message from the specified object header)
+ * Purpose:    Destroy context for debugging callback
+ *        (free the layout message from the specified object header)
  *
- * Return:	Success:	non-negative
- *		Failure:	negative
+ * Return:    Success:    non-negative
+ *        Failure:    negative
  *
- * Programmer:	Quincey Koziol
- *		24th September, 2009
+ * Programmer:    Quincey Koziol
+ *        24th September, 2009
  *
  *-------------------------------------------------------------------------
  */
 static herr_t
 H5D__farray_dst_dbg_context(void *_dbg_ctx)
 {
-    H5D_farray_ctx_ud_t	*dbg_ctx = (H5D_farray_ctx_ud_t	*)_dbg_ctx; /* Context for fixed array callback */
+    H5D_farray_ctx_ud_t    *dbg_ctx = (H5D_farray_ctx_ud_t    *)_dbg_ctx; /* Context for fixed array callback */
 
     FUNC_ENTER_STATIC_NOERR
 
@@ -547,16 +547,16 @@ H5D__farray_dst_dbg_context(void *_dbg_ctx)
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_dst_dbg_context() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_filt_fill
+ * Function:    H5D__farray_filt_fill
  *
- * Purpose:	Fill "missing elements" in block of elements
+ * Purpose:    Fill "missing elements" in block of elements
  *
- * Return:	Success:	non-negative
- *		Failure:	negative
+ * Return:    Success:    non-negative
+ *        Failure:    negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -578,16 +578,16 @@ H5D__farray_filt_fill(void *nat_blk, size_t nelmts)
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_filt_fill() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_filt_encode
+ * Function:    H5D__farray_filt_encode
  *
- * Purpose:	Encode an element from "native" to "raw" form
+ * Purpose:    Encode an element from "native" to "raw" form
  *
- * Return:	Success:	non-negative
- *		Failure:	negative
+ * Return:    Success:    non-negative
+ *        Failure:    negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -612,7 +612,7 @@ H5D__farray_filt_encode(void *_raw, const void *_elmt, size_t nelmts, void *_ctx
         /* Encode element */
         /* (advances 'raw' pointer) */
         H5F_addr_encode_len(ctx->file_addr_len, &raw, elmt->addr);
-	UINT64ENCODE_VAR(raw, elmt->nbytes, ctx->chunk_size_len);
+    UINT64ENCODE_VAR(raw, elmt->nbytes, ctx->chunk_size_len);
         UINT32ENCODE(raw, elmt->filter_mask);
 
         /* Advance native element pointer */
@@ -625,16 +625,16 @@ H5D__farray_filt_encode(void *_raw, const void *_elmt, size_t nelmts, void *_ctx
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_filt_encode() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_filt_decode
+ * Function:    H5D__farray_filt_decode
  *
- * Purpose:	Decode an element from "raw" to "native" form
+ * Purpose:    Decode an element from "raw" to "native" form
  *
- * Return:	Success:	non-negative
- *		Failure:	negative
+ * Return:    Success:    non-negative
+ *        Failure:    negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -658,7 +658,7 @@ H5D__farray_filt_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx
         /* Decode element */
         /* (advances 'raw' pointer) */
         H5F_addr_decode_len(ctx->file_addr_len, &raw, &elmt->addr);
-	UINT64DECODE_VAR(raw, elmt->nbytes, ctx->chunk_size_len);
+    UINT64DECODE_VAR(raw, elmt->nbytes, ctx->chunk_size_len);
         UINT32DECODE(raw, elmt->filter_mask);
 
         /* Advance native element pointer */
@@ -671,16 +671,16 @@ H5D__farray_filt_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_filt_decode() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_filt_debug
+ * Function:    H5D__farray_filt_debug
  *
- * Purpose:	Display an element for debugging
+ * Purpose:    Display an element for debugging
  *
- * Return:	Success:	non-negative
- *		Failure:	negative
+ * Return:    Success:    non-negative
+ *        Failure:    negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -699,24 +699,24 @@ H5D__farray_filt_debug(FILE *stream, int indent, int fwidth, hsize_t idx,
     HDassert(elmt);
 
     /* Print element */
-    sprintf(temp_str, "Element #%llu:", (unsigned long long)idx);
+    HDsprintf(temp_str, "Element #%llu:", (unsigned long long)idx);
     HDfprintf(stream, "%*s%-*s {%a, %u, %0x}\n", indent, "", fwidth, temp_str,
         elmt->addr, elmt->nbytes, elmt->filter_mask);
 
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_filt_debug() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_depend
+ * Function:    H5D__farray_idx_depend
  *
- * Purpose:	Create flush dependency between fixed array and dataset's
+ * Purpose:    Create flush dependency between fixed array and dataset's
  *              object header.
  *
- * Return:	Success:	non-negative
- *		Failure:	negative
+ * Return:    Success:    non-negative
+ *        Failure:    negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -768,7 +768,7 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5D__farray_idx_depend() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function:    H5D__farray_idx_init
  *
@@ -796,17 +796,17 @@ H5D__farray_idx_init(const H5D_chk_idx_info_t *idx_info, const H5S_t H5_ATTR_UNU
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_idx_init() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_open
+ * Function:    H5D__farray_idx_open
  *
- * Purpose:	Opens an existing fixed array and initializes
+ * Purpose:    Opens an existing fixed array and initializes
  *              the layout struct with information about the storage.
  *
- * Return:	Success:	non-negative
- *		Failure:	negative
+ * Return:    Success:    non-negative
+ *        Failure:    negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -836,7 +836,7 @@ H5D__farray_idx_open(const H5D_chk_idx_info_t *idx_info)
 
     /* Open the fixed array for the chunk index */
     if(NULL == (idx_info->storage->u.farray.fa = H5FA_open(idx_info->f, idx_info->storage->idx_addr, &udata)))
-	HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open fixed array")
+    HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open fixed array")
 
      /* Check for SWMR writes to the file */
     if(H5F_INTENT(idx_info->f) & H5F_ACC_SWMR_WRITE)
@@ -847,21 +847,21 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5D__farray_idx_open() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_create
+ * Function:    H5D__farray_idx_create
  *
- * Purpose:	Creates a new indexed-storage fixed array and initializes
+ * Purpose:    Creates a new indexed-storage fixed array and initializes
  *              the layout struct with information about the storage.  The
- *		struct should be immediately written to the object header.
+ *        struct should be immediately written to the object header.
  *
- *		This function must be called before passing LAYOUT to any of
- *		the other indexed storage functions!
+ *        This function must be called before passing LAYOUT to any of
+ *        the other indexed storage functions!
  *
- * Return:	Non-negative on success (with the LAYOUT argument initialized
- *		and ready to write to an object header). Negative on failure.
+ * Return:    Non-negative on success (with the LAYOUT argument initialized
+ *        and ready to write to an object header). Negative on failure.
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -869,9 +869,9 @@ done:
 static herr_t
 H5D__farray_idx_create(const H5D_chk_idx_info_t *idx_info)
 {
-    H5FA_create_t 	cparam; /* Fixed array creation parameters */
+    H5FA_create_t     cparam; /* Fixed array creation parameters */
     H5D_farray_ctx_ud_t udata;  /* User data for fixed array create call */
-    herr_t 	ret_value = SUCCEED; 	/* Return value */
+    herr_t     ret_value = SUCCEED;     /* Return value */
 
     FUNC_ENTER_STATIC
 
@@ -887,7 +887,7 @@ H5D__farray_idx_create(const H5D_chk_idx_info_t *idx_info)
 
     /* General parameters */
     if(idx_info->pline->nused > 0) {
-	unsigned chunk_size_len;        /* Size of encoded chunk size */
+    unsigned chunk_size_len;        /* Size of encoded chunk size */
 
         /* Compute the size required for encoding the size of a chunk, allowing
          *      for an extra byte, in case the filter makes the chunk larger.
@@ -910,14 +910,14 @@ H5D__farray_idx_create(const H5D_chk_idx_info_t *idx_info)
     /* Set up the user data */
     udata.f = idx_info->f;
     udata.chunk_size = idx_info->layout->size;
-    
+
     /* Create the fixed array for the chunk index */
     if(NULL == (idx_info->storage->u.farray.fa = H5FA_create(idx_info->f, &cparam, &udata)))
-	HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create fixed array")
+    HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create fixed array")
 
     /* Get the address of the fixed array in file */
     if(H5FA_get_addr(idx_info->storage->u.farray.fa, &(idx_info->storage->idx_addr)) < 0)
-	HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query fixed array address")
+    HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query fixed array address")
 
     /* Check for SWMR writes to the file */
     if(H5F_INTENT(idx_info->f) & H5F_ACC_SWMR_WRITE)
@@ -928,15 +928,15 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5D__farray_idx_create() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_is_space_alloc
+ * Function:    H5D__farray_idx_is_space_alloc
  *
- * Purpose:	Query if space is allocated for index method
+ * Purpose:    Query if space is allocated for index method
  *
- * Return:	Non-negative on success/Negative on failure
+ * Return:    Non-negative on success/Negative on failure
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -952,24 +952,24 @@ H5D__farray_idx_is_space_alloc(const H5O_storage_chunk_t *storage)
     FUNC_LEAVE_NOAPI((hbool_t)H5F_addr_defined(storage->idx_addr))
 } /* end H5D__farray_idx_is_space_alloc() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_insert
+ * Function:    H5D__farray_idx_insert
  *
- * Purpose:	Insert chunk address into the indexing structure.
+ * Purpose:    Insert chunk address into the indexing structure.
  *
- * Return:	Non-negative on success/Negative on failure
+ * Return:    Non-negative on success/Negative on failure
+ *
+ * Programmer:    Vailin Choi; 5 May 2014
  *
- * Programmer:	Vailin Choi; 5 May 2014
- *              
  *-------------------------------------------------------------------------
  */
 static herr_t
 H5D__farray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata,
     const H5D_t H5_ATTR_UNUSED *dset)
 {
-    H5FA_t      *fa;  	/* Pointer to fixed array structure */
-    herr_t	ret_value = SUCCEED;		/* Return value */
+    H5FA_t      *fa;      /* Pointer to fixed array structure */
+    herr_t    ret_value = SUCCEED;        /* Return value */
 
     FUNC_ENTER_STATIC
 
@@ -988,7 +988,7 @@ H5D__farray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata
         if(H5D__farray_idx_open(idx_info) < 0)
             HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't open fixed array")
     } else  /* Patch the top level file pointer contained in fa if needed */
-	H5FA_patch_file(idx_info->storage->u.farray.fa, idx_info->f);
+    H5FA_patch_file(idx_info->storage->u.farray.fa, idx_info->f);
 
     /* Set convenience pointer to fixed array structure */
     fa = idx_info->storage->u.farray.fa;
@@ -1002,13 +1002,13 @@ H5D__farray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata
     if(idx_info->pline->nused > 0) {
         H5D_farray_filt_elmt_t elmt;            /* Fixed array element */
 
-	elmt.addr = udata->chunk_block.offset;
+    elmt.addr = udata->chunk_block.offset;
         H5_CHECKED_ASSIGN(elmt.nbytes, uint32_t, udata->chunk_block.length, hsize_t);
         elmt.filter_mask = udata->filter_mask;
 
         /* Set the info for the chunk */
         if(H5FA_set(fa, udata->chunk_idx, &elmt) < 0)
-	    HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk info")
+        HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk info")
     } /* end if */
     else {
         /* Set the address for the chunk */
@@ -1020,17 +1020,17 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* H5D__farray_idx_insert() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_get_addr
+ * Function:    H5D__farray_idx_get_addr
  *
- * Purpose:	Get the file address of a chunk if file space has been
- *		assigned.  Save the retrieved information in the udata
- *		supplied.
+ * Purpose:    Get the file address of a chunk if file space has been
+ *        assigned.  Save the retrieved information in the udata
+ *        supplied.
  *
- * Return:	Non-negative on success/Negative on failure
+ * Return:    Non-negative on success/Negative on failure
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -1038,9 +1038,9 @@ done:
 static herr_t
 H5D__farray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata)
 {
-    H5FA_t      *fa;  	/* Pointer to fixed array structure */
-    hsize_t     idx;   	/* Array index of chunk */
-    herr_t	ret_value = SUCCEED;		/* Return value */
+    H5FA_t      *fa;      /* Pointer to fixed array structure */
+    hsize_t     idx;       /* Array index of chunk */
+    herr_t    ret_value = SUCCEED;        /* Return value */
 
     FUNC_ENTER_STATIC
 
@@ -1059,7 +1059,7 @@ H5D__farray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda
         if(H5D__farray_idx_open(idx_info) < 0)
             HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't open fixed array")
     } else  /* Patch the top level file pointer contained in fa if needed */
-	H5FA_patch_file(idx_info->storage->u.farray.fa, idx_info->f);
+    H5FA_patch_file(idx_info->storage->u.farray.fa, idx_info->f);
 
     /* Set convenience pointer to fixed array structure */
     fa = idx_info->storage->u.farray.fa;
@@ -1088,26 +1088,26 @@ H5D__farray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda
             HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get chunk address")
 
         /* Update the other (constant) information for the chunk */
-	udata->chunk_block.length = idx_info->layout->size;
+    udata->chunk_block.length = idx_info->layout->size;
         udata->filter_mask = 0;
     } /* end else */
 
     if(!H5F_addr_defined(udata->chunk_block.offset))
-	udata->chunk_block.length = 0;
+    udata->chunk_block.length = 0;
 
 done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* H5D__farray_idx_get_addr() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_iterate_cb
+ * Function:    H5D__farray_idx_iterate_cb
  *
- * Purpose:	Callback routine for fixed array element iteration.
+ * Purpose:    Callback routine for fixed array element iteration.
  *
- * Return:	Non-negative on success/Negative on failure
+ * Return:    Non-negative on success/Negative on failure
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -1135,8 +1135,8 @@ H5D__farray_idx_iterate_cb(hsize_t H5_ATTR_UNUSED idx, const void *_elmt, void *
 
     /* Make "generic chunk" callback */
     if(H5F_addr_defined(udata->chunk_rec.chunk_addr))
-	if((ret_value = (udata->cb)(&udata->chunk_rec, udata->udata)) < 0)
-	    HERROR(H5E_DATASET, H5E_CALLBACK, "failure in generic chunk iterator callback");
+    if((ret_value = (udata->cb)(&udata->chunk_rec, udata->udata)) < 0)
+        HERROR(H5E_DATASET, H5E_CALLBACK, "failure in generic chunk iterator callback");
 
     /* Update coordinates of chunk in dataset */
     ndims = udata->common.layout->ndims - 1;
@@ -1159,16 +1159,16 @@ H5D__farray_idx_iterate_cb(hsize_t H5_ATTR_UNUSED idx, const void *_elmt, void *
     FUNC_LEAVE_NOAPI(ret_value)
 } /* H5D__farray_idx_iterate_cb() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_iterate
+ * Function:    H5D__farray_idx_iterate
  *
- * Purpose:	Iterate over the chunks in an index, making a callback
+ * Purpose:    Iterate over the chunks in an index, making a callback
  *              for each one.
  *
- * Return:	Non-negative on success/Negative on failure
+ * Return:    Non-negative on success/Negative on failure
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -1199,50 +1199,50 @@ H5D__farray_idx_iterate(const H5D_chk_idx_info_t *idx_info,
         if(H5D__farray_idx_open(idx_info) < 0)
             HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't open fixed array")
     } else  /* Patch the top level file pointer contained in fa if needed */
-	H5FA_patch_file(idx_info->storage->u.farray.fa, idx_info->f);
+    H5FA_patch_file(idx_info->storage->u.farray.fa, idx_info->f);
 
     /* Set convenience pointer to fixed array structure */
     fa = idx_info->storage->u.farray.fa;
 
     /* Get the fixed array statistics */
     if(H5FA_get_stats(fa, &fa_stat) < 0)
-	HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query fixed array statistics")
+    HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query fixed array statistics")
 
     /* Check if there are any array elements */
     if(fa_stat.nelmts > 0) {
         H5D_farray_it_ud_t udata;   /* User data for iteration callback */
 
-	/* Initialize userdata */
-	HDmemset(&udata, 0, sizeof udata);
-	udata.common.layout = idx_info->layout;
-	udata.common.storage = idx_info->storage;
+    /* Initialize userdata */
+    HDmemset(&udata, 0, sizeof udata);
+    udata.common.layout = idx_info->layout;
+    udata.common.storage = idx_info->storage;
         HDmemset(&udata.chunk_rec, 0, sizeof(udata.chunk_rec));
         udata.filtered = (idx_info->pline->nused > 0);
         if(!udata.filtered) {
             udata.chunk_rec.nbytes = idx_info->layout->size;
             udata.chunk_rec.filter_mask = 0;
         } /* end if */
-	udata.cb = chunk_cb;
-	udata.udata = chunk_udata;
-	
+    udata.cb = chunk_cb;
+    udata.udata = chunk_udata;
+
         /* Iterate over the fixed array elements */
-	if((ret_value = H5FA_iterate(fa, H5D__farray_idx_iterate_cb, &udata)) < 0)
-	    HERROR(H5E_DATASET, H5E_BADITER, "unable to iterate over fixed array chunk index");
+    if((ret_value = H5FA_iterate(fa, H5D__farray_idx_iterate_cb, &udata)) < 0)
+        HERROR(H5E_DATASET, H5E_BADITER, "unable to iterate over fixed array chunk index");
     } /* end if */
 
 done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5D__farray_idx_iterate() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_remove
+ * Function:    H5D__farray_idx_remove
  *
- * Purpose:	Remove chunk from index.
+ * Purpose:    Remove chunk from index.
  *
- * Return:	Non-negative on success/Negative on failure
+ * Return:    Non-negative on success/Negative on failure
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -1250,9 +1250,9 @@ done:
 static herr_t
 H5D__farray_idx_remove(const H5D_chk_idx_info_t *idx_info, H5D_chunk_common_ud_t *udata)
 {
-    H5FA_t      *fa;  	/* Pointer to fixed array structure */
-    hsize_t     idx;   	/* Array index of chunk */
-    herr_t	ret_value = SUCCEED;		/* Return value */
+    H5FA_t      *fa;      /* Pointer to fixed array structure */
+    hsize_t     idx;       /* Array index of chunk */
+    herr_t    ret_value = SUCCEED;        /* Return value */
 
     FUNC_ENTER_STATIC
 
@@ -1271,7 +1271,7 @@ H5D__farray_idx_remove(const H5D_chk_idx_info_t *idx_info, H5D_chunk_common_ud_t
         if(H5D__farray_idx_open(idx_info) < 0)
             HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't open fixed array")
     } else  /* Patch the top level file pointer contained in fa if needed */
-	if(H5FA_patch_file(idx_info->storage->u.farray.fa, idx_info->f) < 0)
+    if(H5FA_patch_file(idx_info->storage->u.farray.fa, idx_info->f) < 0)
             HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't patch fixed array file pointer")
 
     /* Set convenience pointer to fixed array structure */
@@ -1328,16 +1328,16 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* H5D__farray_idx_remove() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_delete_cb
+ * Function:    H5D__farray_idx_delete_cb
  *
- * Purpose:	Delete space for chunk in file
+ * Purpose:    Delete space for chunk in file
  *
- * Return:	Success:	Non-negative
- *		Failure:	negative
+ * Return:    Success:    Non-negative
+ *        Failure:    negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -1365,17 +1365,17 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5D__farray_idx_delete_cb() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_delete
+ * Function:    H5D__farray_idx_delete
  *
- * Purpose:	Delete index and raw data storage for entire dataset
+ * Purpose:    Delete index and raw data storage for entire dataset
  *              (i.e. all chunks)
  *
- * Return:	Success:	Non-negative
- *		Failure:	negative
+ * Return:    Success:    Non-negative
+ *        Failure:    negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -1398,7 +1398,7 @@ H5D__farray_idx_delete(const H5D_chk_idx_info_t *idx_info)
     if(H5F_addr_defined(idx_info->storage->idx_addr)) {
         H5D_farray_ctx_ud_t ctx_udata;  /* User data for fixed array open call */
 
-	/* Iterate over the chunk addresses in the fixed array, deleting each chunk */
+    /* Iterate over the chunk addresses in the fixed array, deleting each chunk */
         if(H5D__farray_idx_iterate(idx_info, H5D__farray_idx_delete_cb, idx_info->f) < 0)
             HGOTO_ERROR(H5E_DATASET, H5E_BADITER, FAIL, "unable to iterate over chunk addresses")
 
@@ -1423,15 +1423,15 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5D__farray_idx_delete() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_copy_setup
+ * Function:    H5D__farray_idx_copy_setup
  *
- * Purpose:	Set up any necessary information for copying chunks
+ * Purpose:    Set up any necessary information for copying chunks
  *
- * Return:	Non-negative on success/Negative on failure
+ * Return:    Non-negative on success/Negative on failure
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -1478,15 +1478,15 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5D__farray_idx_copy_setup() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_copy_shutdown
+ * Function:    H5D__farray_idx_copy_shutdown
  *
- * Purpose:	Shutdown any information from copying chunks
+ * Purpose:    Shutdown any information from copying chunks
  *
- * Return:	Non-negative on success/Negative on failure
+ * Return:    Non-negative on success/Negative on failure
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -1517,7 +1517,7 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5D__farray_idx_copy_shutdown() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function:    H5D__farray_idx_size
  *
@@ -1526,7 +1526,7 @@ done:
  * Return:      Success:        Non-negative
  *              Failure:        negative
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -1558,7 +1558,7 @@ H5D__farray_idx_size(const H5D_chk_idx_info_t *idx_info, hsize_t *index_size)
 
     /* Get the fixed array statistics */
     if(H5FA_get_stats(fa, &fa_stat) < 0)
-	HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query fixed array statistics")
+    HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query fixed array statistics")
 
     *index_size = fa_stat.hdr_size;
     *index_size += fa_stat.dblk_size;
@@ -1573,15 +1573,15 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5D__farray_idx_size() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_reset
+ * Function:    H5D__farray_idx_reset
  *
- * Purpose:	Reset indexing information.
+ * Purpose:    Reset indexing information.
  *
- * Return:	Non-negative on success/Negative on failure
+ * Return:    Non-negative on success/Negative on failure
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -1596,21 +1596,21 @@ H5D__farray_idx_reset(H5O_storage_chunk_t *storage, hbool_t reset_addr)
 
     /* Reset index info */
     if(reset_addr)
-	storage->idx_addr = HADDR_UNDEF;
+    storage->idx_addr = HADDR_UNDEF;
     storage->u.farray.fa = NULL;
 
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_idx_reset() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_dump
+ * Function:    H5D__farray_idx_dump
  *
- * Purpose:	Dump indexing information to a stream.
+ * Purpose:    Dump indexing information to a stream.
  *
- * Return:	Non-negative on success/Negative on failure
+ * Return:    Non-negative on success/Negative on failure
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -1629,15 +1629,15 @@ H5D__farray_idx_dump(const H5O_storage_chunk_t *storage, FILE *stream)
     FUNC_LEAVE_NOAPI(SUCCEED)
 } /* end H5D__farray_idx_dump() */
 
-
+
 /*-------------------------------------------------------------------------
- * Function:	H5D__farray_idx_dest
+ * Function:    H5D__farray_idx_dest
  *
- * Purpose:	Release indexing information in memory.
+ * Purpose:    Release indexing information in memory.
  *
- * Return:	Non-negative on success/Negative on failure
+ * Return:    Non-negative on success/Negative on failure
  *
- * Programmer:	Vailin Choi
+ * Programmer:    Vailin Choi
  *              Thursday, April 30, 2009
  *
  *-------------------------------------------------------------------------
@@ -1657,8 +1657,8 @@ H5D__farray_idx_dest(const H5D_chk_idx_info_t *idx_info)
     /* Check if the fixed array is open */
     if(idx_info->storage->u.farray.fa) {
 
-	/* Patch the top level file pointer contained in fa if needed */
-	if(H5FA_patch_file(idx_info->storage->u.farray.fa, idx_info->f) < 0)
+    /* Patch the top level file pointer contained in fa if needed */
+    if(H5FA_patch_file(idx_info->storage->u.farray.fa, idx_info->f) < 0)
             HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't patch fixed array file pointer")
 
         /* Close fixed array */