Sync 1.14 branch with develop (#3923)

* Fix build error on freebsd (#3883)

Fixes:

checking for config freebsd12.1... no
checking for config freebsd... found
compiler '/home/svcpetsc/petsc-hash-pkgs/39f577/bin/mpicc' is GNU gcc-9.2.0
compiler '/home/svcpetsc/petsc-hash-pkgs/39f577/bin/mpif90' is GNU gfortran-9.2.0
stdout: .: cannot open ./config/classic-fflags: No such file or directory

* Correct CMake command and example packaging (#3888)

* Feat: Hashpin sensitive dependencies on GitHub Actions and enable Dependabot to update them monthly (#3892)

* feat: hashpin sensitive dependencies on GHAs

Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>

* feat: enable dependabot for monthly updates on GHA

Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>

---------

Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>

* Some changes to portal links when they could be found on docs.hdfgroup.org, and changed the helpdesk link to help.hdfgroup.org (#3893)

* Updated some portal links to go directly to docs.hdfgroup. 

* Fixed some portal and help desk links

* Add variable option syncing for examples (#3885)

* Add period(.) at the end of the sentence for consistency. (#3897)

* Remove redundant backslash character from comment. (#3899)

* Disable doxygen as errors for netcdf (#3900)

* disable building doxygen for netcdf test

* Doc versions (#3903)

* Added missing \since tags to H5D.

* Committing clang-format changes

* Fixed H5T version info.

* Committing clang-format changes

* Added missing version info to H5E.

* Committing clang-format changes

* Added version info to H5F public APIs.

* Committing clang-format changes

* Added missing H5Z public API version info.

* Added missing version info to H5G public APIs

* Added missing version info to H5I public API.

* Added missing version info to H5 public APIs

* Committing clang-format changes

* Added missing version info to H5P public APIs

* Added missing version info to H5R public APIs

* Fix comment error.

* Committing clang-format changes

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Change Trouble Shooting to Troubleshooting (#3905)

* Implement optimized support for vector I/O in Subfiling VFD (#3896)

Vector I/O requests are now processed within a single
set of I/O call batches, rather than each I/O vector
entry (tuple constructed from the types, addrs, sizes
and bufs arrays) being processed individually. This allows I/O to be
more efficiently parallelized among the I/O concentrator processes
during large I/O requests.

* Fixed some calculations and add test cases for issues spotted from review

* Removed a variable that was compensating for previous miscalculations

* Add 'warning density' computation to the warnhist script (#3910)

* Add 'warning density' computation to the warnhist script, along with several
cleanups to it.   Add "--enable-show-all-warnings" configure (and CMake)
option to disable compiler diagnostic suppression (and therefore show all the
otherwise suppressed compiler diagnostics), disabled by default.  Clean up
a buncn of misc. warnings.

Signed-off-by: Quincey Koziol <qkoziol@amazon.com>

* Added H5Fdelete_f with test (#3912)

* New Fortran Examples added (#3916)

* added subfiling example

* Added filtered writes with no selection example

* Version and space corrections.

* Restore H5_VERSION definition in configure.ac.

* renamed defined H5_VERS* to avoid conflicts (#3926)

1 files changed, 16 insertions, 1 deletions

diff --git a/src/H5Dpublic.h b/src/H5Dpublic.h
index a4c60cd..35d0edf 100644
--- a/src/H5Dpublic.h
+++ b/src/H5Dpublic.h
@@ -424,6 +424,8 @@ H5_DLL hid_t  H5Dopen_async(hid_t loc_id, const char *name, hid_t dapl_id, hid_t
  *          be released with H5Sclose() when the identifier is no longer
  *          needed so that resource leaks will not occur.
  *
+ * \since 1.0.0
+ *
  * \par Example
  * \snippet H5D_examples.c update
  *
@@ -494,6 +496,8 @@ H5_DLL herr_t H5Dget_space_status(hid_t dset_id, H5D_space_status_t *allocation)
  *          opened datatype is returned. Otherwise, the returned datatype
  *          is read-only.
  *
+ * \since 1.0.0
+ *
  */
 H5_DLL hid_t H5Dget_type(hid_t dset_id);
 
@@ -515,6 +519,8 @@ H5_DLL hid_t H5Dget_type(hid_t dset_id);
  *          The creation property list identifier should be released with
  *          H5Pclose() to prevent resource leaks.
  *
+ * \since 1.0.0
+ *
  */
 H5_DLL hid_t H5Dget_create_plist(hid_t dset_id);
 
@@ -590,6 +596,7 @@ H5_DLL hid_t H5Dget_access_plist(hid_t dset_id);
  *          with no stored values, and 0 (zero), the value returned to
  *          indicate an error.
  *
+ * \since 1.2.0
  *
  */
 H5_DLL hsize_t H5Dget_storage_size(hid_t dset_id);
@@ -872,6 +879,8 @@ H5_DLL haddr_t H5Dget_offset(hid_t dset_id);
  * \par Example
  * \snippet H5D_examples.c read
  *
+ * \since 1.0.0
+ *
  */
 H5_DLL herr_t H5Dread(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id,
                       hid_t dxpl_id, void *buf /*out*/);
@@ -1060,6 +1069,8 @@ H5_DLL herr_t H5Dread_multi_async(size_t count, hid_t dset_id[], hid_t mem_type_
  * \par Example
  * \snippet H5D_examples.c update
  *
+ * \since 1.0.0
+ *
  * \see H5Pset_fill_time(), H5Pset_alloc_time()
  *
  */
@@ -1355,6 +1366,7 @@ H5_DLL herr_t H5Dvlen_get_buf_size(hid_t dset_id, hid_t type_id, hid_t space_id,
  *
  * \see H5Pset_fill_value(), H5Pget_fill_value(), H5Pfill_value_defined(),
  *      H5Pset_fill_time(), H5Pget_fill_time(), H5Pcreate(), H5Dcreate_anon()
+ * \since 1.6.0
  *
  */
 H5_DLL herr_t H5Dfill(const void *fill, hid_t fill_type_id, void *buf, hid_t buf_type_id, hid_t space_id);
@@ -1598,7 +1610,7 @@ H5_DLL herr_t H5Dgather(hid_t src_space_id, const void *src_buf, hid_t type_id,
  * \par Example
  * \snippet H5D_examples.c read
  *
- * \since 1.8.0
+ * \since 1.0.0
  *
  * \see H5Dcreate2(), H5Dopen2()
  *
@@ -1811,6 +1823,7 @@ H5_DLL hid_t H5Dopen1(hid_t loc_id, const char *name);
  *
  * \version 1.8.0 Function deprecated in this release. Parameter size
  *                syntax changed to \Code{const hsize_t size[]} in this release.
+ * \since 1.0.0
  *
  */
 H5_DLL herr_t H5Dextend(hid_t dset_id, const hsize_t size[]);
@@ -1847,6 +1860,8 @@ H5_DLL herr_t H5Dextend(hid_t dset_id, const hsize_t size[]);
  *
  * \version 1.12.0 Function was deprecated
  *
+ * \since 1.2.0
+ *
  */
 H5_DLL herr_t H5Dvlen_reclaim(hid_t type_id, hid_t space_id, hid_t dxpl_id, void *buf);