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authorLarry Knox <lrknox@hdfgroup.org>2021-07-16 15:57:51 (GMT)
committerGitHub <noreply@github.com>2021-07-16 15:57:51 (GMT)
commite2578640fedf671cf11535cf22313dd477da1165 (patch)
tree566b7a32bdd39ddc7120d426979af641343746f6 /src/H5EAiblock.c
parent14794490ec522fbd3ac2faa6efa0920979490fbc (diff)
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Merge issue 839 changes to hdf5 1 10 (#841)
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit 426b50484841118cf633fd6147302a63a30fd746. * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2. Squashed commit of the following: commit 60734e63fe077238f10de3d6ca8f037f9a42af89 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 24 14:20:39 2021 -0500 Hdf5 1 10 Fix tools test (#796) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit bfb780a4441e4ef43dd23708d415e5e3b84800f4 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 23 14:11:46 2021 -0500 Hdf5 1 10 Release Note (#786) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 22 07:03:26 2021 -0500 Hdf5 1 10 Update missing release note info. (#778) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb Author: Dana Robinson <43805+derobins@users.noreply.github.com> Date: Fri Jun 18 06:42:23 2021 -0700 Brings hash table IDs feature from develop/1.12 (#768) * Brings updated tid test from develop * Adds empty H5Iint.c and H5Idbg.c files * H5I renaming to match 1.12/develop * Splits off H5I debug code to H5Idbg.c * Splits internal H5I.c functionality to H5Iint.c * Header cleanup * More renaming cleanup to match develop/1.12 * Adds "save last ID" optimization * Adds uthash.h * Adds hash table IDs from develop/1.12 * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 17 11:21:43 2021 -0500 Hdf5 1 10 Fix cmake configure path (#762) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 16 15:45:58 2021 -0500 Hdf5 1 10 merge warnings changes (#756) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit e25980e7f35b8508db90648409ba80ee36d61c9e Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 8 14:37:13 2021 -0500 Hdf5 1 10 merges of CMake changes (#738) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jun 3 16:07:23 2021 -0500 Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit 426b50484841118cf633fd6147302a63a30fd746. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * (fix) Segmentation fault when using a compound type. (#143) * (fix) Segmentation fault when using a compound type. In the case when a compounded attribute is written to dataset followed by writing the data with a data transform function to the dataset will result in a segmentation fault. It turns out the data is classified as compounded while it is not. Now, the state is always reset first to not compounded followed by the existing check if the variable is compounded. * (fix) Removed undesired comment lines. * (fix) Segmentation fault when using a compound type: added test. * (fix) Added the missing cmpd_transform.c file to MANIFEST. * (fix) cmpd_dtransform test: autotools and source header. Added the cmp_dtransform test to the autotools configuration and updated the HDF Group copyright header. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * (fix) H5Z_xform_create function and scientific notation (#144) * (fix) H5Z_xform_create function and scientific notation Implemented a more sophisticated check to support scientific notation in the expression of the H5Zset_data_transform function. * (fix) H5Z_xform_create and scientific notation: Added test. Added a test to demonstrate that the parsing of expression which includes scientific notation works correctly. Improved inline comment. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * Adds const to a few global variables (#623) * Committing clang-format changes * Adds consts to a few global variables Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Made private my_yyinput function static (#618) This prevents it being exported as a public symbol. * Reduces overly-pedantic casting in the public headers (#644) * Committing clang-format changes * Fixes overly pedantic casting in public headers Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Use internal version of H5Eprint2 to avoid possible stack overflow (#661) * Fixes for a couple of trivial warnings (#676) * Committing clang-format changes * Trivial warning fixes: * Removes an unused done target in H5Tbit.c * Add (void) to quiet "ignored return value" warnings in the generators (which generally ignore errors) Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Various CMake changes (#679) * Committing clang-format changes * Several CMake updates: * Removes unused HDF5_ENABLE_HSIZET * Switches TEST_SHELL_SCRIPTS to ON * Sets SH_PROGRAM to bash instead of sh * Set default build type back to RelWithDebInfo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Revert "Removes alternative function enter/leave macro scheme (#678)" This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a. * err_compat test cleanup (#681) * Committing clang-format changes * Cleans up err_compat test and output * Formatted source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Sets the memory alloc sanity check option to disabled in autotools (#686) * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)" This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b. (Only for release branch). * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> Co-authored-by: Jan-Willem Blokland <J.W.S.Blokland@XS4All.nl> Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> Co-authored-by: Sean McBride <sean@rogue-research.com>
Diffstat (limited to 'src/H5EAiblock.c')
-rw-r--r--src/H5EAiblock.c169
1 files changed, 105 insertions, 64 deletions
diff --git a/src/H5EAiblock.c b/src/H5EAiblock.c
index 1ef7980..5afb28a 100644
--- a/src/H5EAiblock.c
+++ b/src/H5EAiblock.c
@@ -91,21 +91,25 @@ H5FL_SEQ_DEFINE_STATIC(haddr_t);
*
*-------------------------------------------------------------------------
*/
-BEGIN_FUNC(PKG, ERR, H5EA_iblock_t *, NULL, NULL, H5EA__iblock_alloc(H5EA_hdr_t *hdr))
+H5EA_iblock_t *
+H5EA__iblock_alloc(H5EA_hdr_t *hdr)
+{
+ H5EA_iblock_t *iblock = NULL; /* Extensible array index block */
+ H5EA_iblock_t *ret_value = NULL;
- /* Local variables */
- H5EA_iblock_t *iblock = NULL; /* Extensible array index block */
+ FUNC_ENTER_PACKAGE
/* Check arguments */
HDassert(hdr);
/* Allocate memory for the index block */
if (NULL == (iblock = H5FL_CALLOC(H5EA_iblock_t)))
- H5E_THROW(H5E_CANTALLOC, "memory allocation failed for extensible array index block")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, NULL,
+ "memory allocation failed for extensible array index block")
/* Share common array information */
if (H5EA__hdr_incr(hdr) < 0)
- H5E_THROW(H5E_CANTINC, "can't increment reference count on shared array header")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTINC, NULL, "can't increment reference count on shared array header")
iblock->hdr = hdr;
/* Set non-zero internal fields */
@@ -121,27 +125,30 @@ BEGIN_FUNC(PKG, ERR, H5EA_iblock_t *, NULL, NULL, H5EA__iblock_alloc(H5EA_hdr_t
if (NULL ==
(iblock->elmts = H5FL_BLK_MALLOC(
idx_blk_elmt_buf, (size_t)(hdr->cparam.idx_blk_elmts * hdr->cparam.cls->nat_elmt_size))))
- H5E_THROW(H5E_CANTALLOC, "memory allocation failed for index block data element buffer")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, NULL,
+ "memory allocation failed for index block data element buffer")
/* Allocate buffer for data block addresses in index block */
if (iblock->ndblk_addrs > 0)
if (NULL == (iblock->dblk_addrs = H5FL_SEQ_MALLOC(haddr_t, iblock->ndblk_addrs)))
- H5E_THROW(H5E_CANTALLOC, "memory allocation failed for index block data block addresses")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, NULL,
+ "memory allocation failed for index block data block addresses")
/* Allocate buffer for super block addresses in index block */
if (iblock->nsblk_addrs > 0)
if (NULL == (iblock->sblk_addrs = H5FL_SEQ_MALLOC(haddr_t, iblock->nsblk_addrs)))
- H5E_THROW(H5E_CANTALLOC, "memory allocation failed for index block super block addresses")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, NULL,
+ "memory allocation failed for index block super block addresses")
/* Set the return value */
ret_value = iblock;
- CATCH
+done:
if (!ret_value)
if (iblock && H5EA__iblock_dest(iblock) < 0)
- H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array index block")
-
-END_FUNC(PKG) /* end H5EA__iblock_alloc() */
+ HDONE_ERROR(H5E_EARRAY, H5E_CANTFREE, NULL, "unable to destroy extensible array index block")
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5EA__iblock_alloc() */
/*-------------------------------------------------------------------------
* Function: H5EA__iblock_create
@@ -155,13 +162,15 @@ END_FUNC(PKG) /* end H5EA__iblock_alloc() */
*
*-------------------------------------------------------------------------
*/
-BEGIN_FUNC(PKG, ERR, haddr_t, HADDR_UNDEF, HADDR_UNDEF,
- H5EA__iblock_create(H5EA_hdr_t *hdr, hbool_t *stats_changed))
+haddr_t
+H5EA__iblock_create(H5EA_hdr_t *hdr, hbool_t *stats_changed)
+{
+ H5EA_iblock_t *iblock = NULL; /* Extensible array index block */
+ haddr_t iblock_addr; /* Extensible array index block address */
+ hbool_t inserted = FALSE; /* Whether the header was inserted into cache */
+ haddr_t ret_value = HADDR_UNDEF;
- /* Local variables */
- H5EA_iblock_t *iblock = NULL; /* Extensible array index block */
- haddr_t iblock_addr; /* Extensible array index block address */
- hbool_t inserted = FALSE; /* Whether the header was inserted into cache */
+ FUNC_ENTER_PACKAGE
/* Sanity check */
HDassert(hdr);
@@ -169,21 +178,24 @@ BEGIN_FUNC(PKG, ERR, haddr_t, HADDR_UNDEF, HADDR_UNDEF,
/* Allocate the index block */
if (NULL == (iblock = H5EA__iblock_alloc(hdr)))
- H5E_THROW(H5E_CANTALLOC, "memory allocation failed for extensible array index block")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, HADDR_UNDEF,
+ "memory allocation failed for extensible array index block")
/* Set size of index block on disk */
iblock->size = H5EA_IBLOCK_SIZE(iblock);
/* Allocate space for the index block on disk */
if (HADDR_UNDEF == (iblock_addr = H5MF_alloc(hdr->f, H5FD_MEM_EARRAY_IBLOCK, (hsize_t)iblock->size)))
- H5E_THROW(H5E_CANTALLOC, "file allocation failed for extensible array index block")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, HADDR_UNDEF,
+ "file allocation failed for extensible array index block")
iblock->addr = iblock_addr;
/* Clear any elements in index block to fill value */
if (hdr->cparam.idx_blk_elmts > 0) {
/* Call the class's 'fill' callback */
if ((hdr->cparam.cls->fill)(iblock->elmts, (size_t)hdr->cparam.idx_blk_elmts) < 0)
- H5E_THROW(H5E_CANTSET, "can't set extensible array index block elements to class's fill value")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTSET, HADDR_UNDEF,
+ "can't set extensible array index block elements to class's fill value")
} /* end if */
/* Reset any data block addresses in the index block */
@@ -204,13 +216,15 @@ BEGIN_FUNC(PKG, ERR, haddr_t, HADDR_UNDEF, HADDR_UNDEF,
/* Cache the new extensible array index block */
if (H5AC_insert_entry(hdr->f, H5AC_EARRAY_IBLOCK, iblock_addr, iblock, H5AC__NO_FLAGS_SET) < 0)
- H5E_THROW(H5E_CANTINSERT, "can't add extensible array index block to cache")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTINSERT, HADDR_UNDEF,
+ "can't add extensible array index block to cache")
inserted = TRUE;
/* Add index block as child of 'top' proxy */
if (hdr->top_proxy) {
if (H5AC_proxy_entry_add_child(hdr->top_proxy, hdr->f, iblock) < 0)
- H5E_THROW(H5E_CANTSET, "unable to add extensible array entry as child of array proxy")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTSET, HADDR_UNDEF,
+ "unable to add extensible array entry as child of array proxy")
iblock->top_proxy = hdr->top_proxy;
} /* end if */
@@ -229,25 +243,29 @@ BEGIN_FUNC(PKG, ERR, haddr_t, HADDR_UNDEF, HADDR_UNDEF,
/* Set address of index block to return */
ret_value = iblock_addr;
- CATCH
+done:
if (!H5F_addr_defined(ret_value))
if (iblock) {
/* Remove from cache, if inserted */
if (inserted)
if (H5AC_remove_entry(iblock) < 0)
- H5E_THROW(H5E_CANTREMOVE, "unable to remove extensible array index block from cache")
+ HDONE_ERROR(H5E_EARRAY, H5E_CANTREMOVE, HADDR_UNDEF,
+ "unable to remove extensible array index block from cache")
/* Release index block's disk space */
if (H5F_addr_defined(iblock->addr) &&
H5MF_xfree(hdr->f, H5FD_MEM_EARRAY_IBLOCK, iblock->addr, (hsize_t)iblock->size) < 0)
- H5E_THROW(H5E_CANTFREE, "unable to release file space for extensible array index block")
+ HDONE_ERROR(H5E_EARRAY, H5E_CANTFREE, HADDR_UNDEF,
+ "unable to release file space for extensible array index block")
/* Destroy index block */
if (H5EA__iblock_dest(iblock) < 0)
- H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array index block")
+ HDONE_ERROR(H5E_EARRAY, H5E_CANTFREE, HADDR_UNDEF,
+ "unable to destroy extensible array index block")
} /* end if */
-END_FUNC(PKG) /* end H5EA__iblock_create() */
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5EA__iblock_create() */
/*-------------------------------------------------------------------------
* Function: H5EA__iblock_protect
@@ -261,10 +279,13 @@ END_FUNC(PKG) /* end H5EA__iblock_create() */
*
*-------------------------------------------------------------------------
*/
-BEGIN_FUNC(PKG, ERR, H5EA_iblock_t *, NULL, NULL, H5EA__iblock_protect(H5EA_hdr_t *hdr, unsigned flags))
+H5EA_iblock_t *
+H5EA__iblock_protect(H5EA_hdr_t *hdr, unsigned flags)
+{
+ H5EA_iblock_t *iblock = NULL; /* Pointer to index block */
+ H5EA_iblock_t *ret_value = NULL;
- /* Local variables */
- H5EA_iblock_t *iblock = NULL; /* Pointer to index block */
+ FUNC_ENTER_PACKAGE
/* Sanity check */
HDassert(hdr);
@@ -275,31 +296,35 @@ BEGIN_FUNC(PKG, ERR, H5EA_iblock_t *, NULL, NULL, H5EA__iblock_protect(H5EA_hdr_
/* Protect the index block */
if (NULL ==
(iblock = (H5EA_iblock_t *)H5AC_protect(hdr->f, H5AC_EARRAY_IBLOCK, hdr->idx_blk_addr, hdr, flags)))
- H5E_THROW(H5E_CANTPROTECT, "unable to protect extensible array index block, address = %llu",
- (unsigned long long)hdr->idx_blk_addr)
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTPROTECT, NULL,
+ "unable to protect extensible array index block, address = %llu",
+ (unsigned long long)hdr->idx_blk_addr)
/* Create top proxy, if it doesn't exist */
if (hdr->top_proxy && NULL == iblock->top_proxy) {
/* Add index block as child of 'top' proxy */
if (H5AC_proxy_entry_add_child(hdr->top_proxy, hdr->f, iblock) < 0)
- H5E_THROW(H5E_CANTSET, "unable to add extensible array entry as child of array proxy")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTSET, NULL,
+ "unable to add extensible array entry as child of array proxy")
iblock->top_proxy = hdr->top_proxy;
} /* end if */
/* Set return value */
ret_value = iblock;
- CATCH
+done:
/* Clean up on error */
if (!ret_value) {
/* Release the index block, if it was protected */
if (iblock &&
H5AC_unprotect(hdr->f, H5AC_EARRAY_IBLOCK, iblock->addr, iblock, H5AC__NO_FLAGS_SET) < 0)
- H5E_THROW(H5E_CANTUNPROTECT, "unable to unprotect extensible array index block, address = %llu",
- (unsigned long long)iblock->addr)
+ HDONE_ERROR(H5E_EARRAY, H5E_CANTUNPROTECT, NULL,
+ "unable to unprotect extensible array index block, address = %llu",
+ (unsigned long long)iblock->addr)
} /* end if */
-END_FUNC(PKG) /* end H5EA__iblock_protect() */
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5EA__iblock_protect() */
/*-------------------------------------------------------------------------
* Function: H5EA__iblock_unprotect
@@ -313,22 +338,25 @@ END_FUNC(PKG) /* end H5EA__iblock_protect() */
*
*-------------------------------------------------------------------------
*/
-BEGIN_FUNC(PKG, ERR, herr_t, SUCCEED, FAIL,
- H5EA__iblock_unprotect(H5EA_iblock_t *iblock, unsigned cache_flags))
+herr_t
+H5EA__iblock_unprotect(H5EA_iblock_t *iblock, unsigned cache_flags)
+{
+ herr_t ret_value = SUCCEED;
- /* Local variables */
+ FUNC_ENTER_PACKAGE
/* Sanity check */
HDassert(iblock);
/* Unprotect the index block */
if (H5AC_unprotect(iblock->hdr->f, H5AC_EARRAY_IBLOCK, iblock->addr, iblock, cache_flags) < 0)
- H5E_THROW(H5E_CANTUNPROTECT, "unable to unprotect extensible array index block, address = %llu",
- (unsigned long long)iblock->addr)
-
- CATCH
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTUNPROTECT, FAIL,
+ "unable to unprotect extensible array index block, address = %llu",
+ (unsigned long long)iblock->addr)
-END_FUNC(PKG) /* end H5EA__iblock_unprotect() */
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5EA__iblock_unprotect() */
/*-------------------------------------------------------------------------
* Function: H5EA__iblock_delete
@@ -342,10 +370,13 @@ END_FUNC(PKG) /* end H5EA__iblock_unprotect() */
*
*-------------------------------------------------------------------------
*/
-BEGIN_FUNC(PKG, ERR, herr_t, SUCCEED, FAIL, H5EA__iblock_delete(H5EA_hdr_t *hdr))
+herr_t
+H5EA__iblock_delete(H5EA_hdr_t *hdr)
+{
+ H5EA_iblock_t *iblock = NULL; /* Pointer to index block */
+ herr_t ret_value = SUCCEED;
- /* Local variables */
- H5EA_iblock_t *iblock = NULL; /* Pointer to index block */
+ FUNC_ENTER_PACKAGE
/* Sanity check */
HDassert(hdr);
@@ -353,8 +384,9 @@ BEGIN_FUNC(PKG, ERR, herr_t, SUCCEED, FAIL, H5EA__iblock_delete(H5EA_hdr_t *hdr)
/* Protect index block */
if (NULL == (iblock = H5EA__iblock_protect(hdr, H5AC__NO_FLAGS_SET)))
- H5E_THROW(H5E_CANTPROTECT, "unable to protect extensible array index block, address = %llu",
- (unsigned long long)hdr->idx_blk_addr)
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTPROTECT, FAIL,
+ "unable to protect extensible array index block, address = %llu",
+ (unsigned long long)hdr->idx_blk_addr)
/* Check for index block having data block pointers */
if (iblock->ndblk_addrs > 0) {
@@ -370,7 +402,8 @@ BEGIN_FUNC(PKG, ERR, herr_t, SUCCEED, FAIL, H5EA__iblock_delete(H5EA_hdr_t *hdr)
/* Delete data block */
if (H5EA__dblock_delete(hdr, iblock, iblock->dblk_addrs[u],
hdr->sblk_info[sblk_idx].dblk_nelmts) < 0)
- H5E_THROW(H5E_CANTDELETE, "unable to delete extensible array data block")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTDELETE, FAIL,
+ "unable to delete extensible array data block")
iblock->dblk_addrs[u] = HADDR_UNDEF;
} /* end if */
@@ -396,19 +429,21 @@ BEGIN_FUNC(PKG, ERR, herr_t, SUCCEED, FAIL, H5EA__iblock_delete(H5EA_hdr_t *hdr)
/* Delete super block */
if (H5EA__sblock_delete(hdr, iblock, iblock->sblk_addrs[u], (unsigned)(u + iblock->nsblks)) <
0)
- H5E_THROW(H5E_CANTDELETE, "unable to delete extensible array super block")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTDELETE, FAIL,
+ "unable to delete extensible array super block")
iblock->sblk_addrs[u] = HADDR_UNDEF;
- } /* end if */
- } /* end for */
- } /* end if */
+ }
+ }
+ }
- CATCH
+done:
/* Finished deleting index block in metadata cache */
if (iblock && H5EA__iblock_unprotect(iblock, H5AC__DIRTIED_FLAG | H5AC__DELETED_FLAG |
H5AC__FREE_FILE_SPACE_FLAG) < 0)
- H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array index block")
+ HDONE_ERROR(H5E_EARRAY, H5E_CANTUNPROTECT, FAIL, "unable to release extensible array index block")
-END_FUNC(PKG) /* end H5EA__iblock_delete() */
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5EA__iblock_delete() */
/*-------------------------------------------------------------------------
* Function: H5EA__iblock_dest
@@ -422,7 +457,12 @@ END_FUNC(PKG) /* end H5EA__iblock_delete() */
*
*-------------------------------------------------------------------------
*/
-BEGIN_FUNC(PKG, ERR, herr_t, SUCCEED, FAIL, H5EA__iblock_dest(H5EA_iblock_t *iblock))
+herr_t
+H5EA__iblock_dest(H5EA_iblock_t *iblock)
+{
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE
/* Sanity check */
HDassert(iblock);
@@ -454,7 +494,8 @@ BEGIN_FUNC(PKG, ERR, herr_t, SUCCEED, FAIL, H5EA__iblock_dest(H5EA_iblock_t *ibl
/* Decrement reference count on shared info */
if (H5EA__hdr_decr(iblock->hdr) < 0)
- H5E_THROW(H5E_CANTDEC, "can't decrement reference count on shared array header")
+ HGOTO_ERROR(H5E_EARRAY, H5E_CANTDEC, FAIL,
+ "can't decrement reference count on shared array header")
iblock->hdr = NULL;
} /* end if */
@@ -464,6 +505,6 @@ BEGIN_FUNC(PKG, ERR, herr_t, SUCCEED, FAIL, H5EA__iblock_dest(H5EA_iblock_t *ibl
/* Free the index block itself */
iblock = H5FL_FREE(H5EA_iblock_t, iblock);
- CATCH
-
-END_FUNC(PKG) /* end H5EA__iblock_dest() */
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5EA__iblock_dest() */
generated by cgit v0.12 at 2024-12-30 21:47:53 (GMT)