[svn-r15614] Description:

	More extensible array features: add support for setting/getting
elements in the array's index block.

Tested on:
        Mac OS X/32 10.5.4 (amazon) in debug mode
        Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode

1 files changed, 325 insertions, 0 deletions

diff --git a/src/H5EAiblock.c b/src/H5EAiblock.c
new file mode 100644
index 0000000..2e924a9
--- /dev/null
+++ b/src/H5EAiblock.c
@@ -0,0 +1,325 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group.                                               *
+ * Copyright by the Board of Trustees of the University of Illinois.         *
+ * All rights reserved.                                                      *
+ *                                                                           *
+ * This file is part of HDF5.  The full HDF5 copyright notice, including     *
+ * terms governing use, modification, and redistribution, is contained in    *
+ * the files COPYING and Copyright.html.  COPYING can be found at the root   *
+ * of the source code distribution tree; Copyright.html can be found at the  *
+ * root level of an installed copy of the electronic HDF5 document set and   *
+ * is linked from the top-level documents page.  It can also be found at     *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have          *
+ * access to either file, you may request a copy from help@hdfgroup.org.     *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created:		H5EAiblock.c
+ *			Sep  9 2008
+ *			Quincey Koziol <koziol@hdfgroup.org>
+ *
+ * Purpose:		Index block routines for extensible arrays.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+/**********************/
+/* Module Declaration */
+/**********************/
+
+#define H5EA_MODULE
+
+
+/***********************/
+/* Other Packages Used */
+/***********************/
+
+
+/***********/
+/* Headers */
+/***********/
+#include "H5private.h"		/* Generic Functions			*/
+#include "H5Eprivate.h"		/* Error handling		  	*/
+#include "H5EApkg.h"		/* Extensible Arrays			*/
+#include "H5MFprivate.h"	/* File memory management		*/
+
+
+/****************/
+/* Local Macros */
+/****************/
+
+
+/******************/
+/* Local Typedefs */
+/******************/
+
+
+/********************/
+/* Package Typedefs */
+/********************/
+
+
+/********************/
+/* Local Prototypes */
+/********************/
+
+
+/*********************/
+/* Package Variables */
+/*********************/
+
+
+/*****************************/
+/* Library Private Variables */
+/*****************************/
+
+
+/*******************/
+/* Local Variables */
+/*******************/
+
+/* Declare a free list to manage the H5EA_iblock_t struct */
+H5FL_DEFINE(H5EA_iblock_t);
+
+/* Declare a free list to manage the index block elements */
+H5FL_BLK_DEFINE(elmt_buf);
+
+
+
+/*-------------------------------------------------------------------------
+ * Function:	H5EA__iblock_alloc
+ *
+ * Purpose:	Allocate shared extensible array index block
+ *
+ * Return:	Non-NULL pointer to index block on success/NULL on failure
+ *
+ * Programmer:	Quincey Koziol
+ *		koziol@hdfgroup.org
+ *		Sep  9 2008
+ *
+ *-------------------------------------------------------------------------
+ */
+BEGIN_FUNC(PKG, ERR,
+H5EA_iblock_t *, NULL, NULL,
+H5EA__iblock_alloc(H5EA_hdr_t *hdr))
+
+    /* Local variables */
+    H5EA_iblock_t *iblock = NULL;          /* Extensible array index block */
+
+    /* Check arguments */
+    HDassert(hdr);
+
+    /* Allocate memory for the index block */
+    if(NULL == (iblock = H5FL_CALLOC(H5EA_iblock_t)))
+	H5E_THROW(H5E_CANTALLOC, "memory allocation failed for extensible array index block")
+
+    /* Set non-zero internal fields */
+    iblock->addr = HADDR_UNDEF;
+
+    /* Allocate buffer for elements in index block */
+    if(hdr->idx_blk_elmts > 0)
+        if(NULL == (iblock->elmts = H5FL_BLK_MALLOC(elmt_buf, (size_t)(hdr->idx_blk_elmts * hdr->cls->nat_elmt_size))))
+            H5E_THROW(H5E_CANTALLOC, "memory allocation failed for index block data element buffer")
+
+    /* Set the return value */
+    ret_value = iblock;
+
+CATCH
+    if(!ret_value)
+        if(iblock && H5EA__cache_iblock_dest(hdr->f, iblock) < 0)
+            H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array index block")
+
+END_FUNC(PKG)   /* end H5EA__iblock_alloc() */
+
+
+/*-------------------------------------------------------------------------
+ * Function:	H5EA__iblock_create
+ *
+ * Purpose:	Creates a new extensible array index block in the file
+ *
+ * Return:	Valid file address on success/HADDR_UNDEF on failure
+ *
+ * Programmer:	Quincey Koziol
+ *		koziol@hdfgroup.org
+ *		Sep  9 2008
+ *
+ *-------------------------------------------------------------------------
+ */
+BEGIN_FUNC(PKG, ERR,
+haddr_t, HADDR_UNDEF, HADDR_UNDEF,
+H5EA__iblock_create(H5EA_hdr_t *hdr, hid_t dxpl_id))
+
+    /* Local variables */
+    H5EA_iblock_t *iblock = NULL;      /* Extensible array index block */
+
+#ifdef QAK
+HDfprintf(stderr, "%s: Called\n", __func__);
+#endif /* QAK */
+
+    /* Sanity check */
+    HDassert(hdr);
+
+    /* Allocate the index block */
+    if(NULL == (iblock = H5EA__iblock_alloc(hdr)))
+	H5E_THROW(H5E_CANTALLOC, "memory allocation failed for extensible array index block")
+
+    /* Set size of header on disk */
+    iblock->size = H5EA_IBLOCK_SIZE(hdr);
+#ifdef QAK
+HDfprintf(stderr, "%s: iblock->size = %Zu\n", __func__, iblock->size);
+#endif /* QAK */
+
+    /* Allocate space for the index block on disk */
+    if(HADDR_UNDEF == (iblock->addr = H5MF_alloc(hdr->f, H5FD_MEM_EARRAY_IBLOCK, dxpl_id, iblock->size)))
+	H5E_THROW(H5E_CANTALLOC, "file allocation failed for extensible array index block")
+
+    /* Share common array information */
+    iblock->hdr = hdr;
+    if(H5EA__hdr_incr(hdr) < 0)
+	H5E_THROW(H5E_CANTINC, "can't increment reference count on shared array header")
+
+    /* Clear any elements in index block to fill value */
+    if(hdr->idx_blk_elmts > 0) {
+        /* Call the class's 'fill' callback */
+        if((hdr->cls->fill)(iblock->elmts, (size_t)hdr->idx_blk_elmts) < 0)
+            H5E_THROW(H5E_CANTSET, "can't set extensible array index block elements to class's fill value")
+    } /* end if */
+
+    /* Cache the new extensible array index block */
+    if(H5AC_set(hdr->f, dxpl_id, H5AC_EARRAY_IBLOCK, iblock->addr, iblock, H5AC__NO_FLAGS_SET) < 0)
+	H5E_THROW(H5E_CANTINSERT, "can't add extensible array index block to cache")
+
+    /* Set address of index block to return */
+    ret_value = iblock->addr;
+
+CATCH
+    if(!H5F_addr_defined(ret_value))
+        if(iblock) {
+            /* Release index block's disk space */
+            if(H5F_addr_defined(iblock->addr) && H5MF_xfree(hdr->f, H5FD_MEM_EARRAY_IBLOCK, dxpl_id, iblock->addr, (hsize_t)iblock->size) < 0)
+                H5E_THROW(H5E_CANTFREE, "unable to release extensible array index block")
+
+            /* Destroy index block */
+            if(H5EA__cache_iblock_dest(hdr->f, iblock) < 0)
+                H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array index block")
+        } /* end if */
+
+END_FUNC(PKG)   /* end H5EA__iblock_create() */
+
+
+/*-------------------------------------------------------------------------
+ * Function:	H5EA__iblock_protect
+ *
+ * Purpose:	Convenience wrapper around protecting extensible array index block
+ *
+ * Return:	Non-NULL pointer to index block on success/NULL on failure
+ *
+ * Programmer:	Quincey Koziol
+ *		koziol@hdfgroup.org
+ *		Sep  9 2008
+ *
+ *-------------------------------------------------------------------------
+ */
+BEGIN_FUNC(PKG, ERR,
+H5EA_iblock_t *, NULL, NULL,
+H5EA__iblock_protect(H5EA_hdr_t *hdr, hid_t dxpl_id, H5AC_protect_t rw))
+
+    /* Local variables */
+
+#ifdef QAK
+HDfprintf(stderr, "%s: Called\n", __func__);
+#endif /* QAK */
+
+    /* Sanity check */
+    HDassert(hdr);
+
+    /* Protect the index block */
+    if(NULL == (ret_value = (H5EA_iblock_t *)H5AC_protect(hdr->f, dxpl_id, H5AC_EARRAY_IBLOCK, hdr->idx_blk_addr, NULL, hdr, rw)))
+        H5E_THROW(H5E_CANTPROTECT, "unable to protect extensible array index block, address = %llu", (unsigned long_long)hdr->idx_blk_addr)
+
+CATCH
+
+END_FUNC(PKG)   /* end H5EA__iblock_protect() */
+
+
+/*-------------------------------------------------------------------------
+ * Function:	H5EA__iblock_unprotect
+ *
+ * Purpose:	Convenience wrapper around unprotecting extensible array index block
+ *
+ * Return:	SUCCEED/FAIL
+ *
+ * Programmer:	Quincey Koziol
+ *		koziol@hdfgroup.org
+ *		Sep  9 2008
+ *
+ *-------------------------------------------------------------------------
+ */
+BEGIN_FUNC(PKG, ERR,
+herr_t, SUCCEED, FAIL,
+H5EA__iblock_unprotect(H5EA_iblock_t *iblock, hid_t dxpl_id, unsigned cache_flags))
+
+    /* Local variables */
+
+#ifdef QAK
+HDfprintf(stderr, "%s: Called\n", __func__);
+#endif /* QAK */
+
+    /* Sanity check */
+    HDassert(iblock);
+
+    /* Unprotect the index block */
+    if(H5AC_unprotect(iblock->hdr->f, dxpl_id, H5AC_EARRAY_IBLOCK, iblock->addr, iblock, cache_flags) < 0)
+        H5E_THROW(H5E_CANTUNPROTECT, "unable to unprotect extensible array index block, address = %llu", (unsigned long_long)iblock->addr)
+
+CATCH
+
+END_FUNC(PKG)   /* end H5EA__iblock_unprotect() */
+
+
+/*-------------------------------------------------------------------------
+ * Function:	H5EA__iblock_delete
+ *
+ * Purpose:	Delete index block
+ *
+ * Return:	SUCCEED/FAIL
+ *
+ * Programmer:	Quincey Koziol
+ *		koziol@hdfgroup.org
+ *		Sep  9 2008
+ *
+ *-------------------------------------------------------------------------
+ */
+BEGIN_FUNC(PKG, ERR,
+herr_t, SUCCEED, FAIL,
+H5EA__iblock_delete(H5EA_hdr_t *hdr, hid_t dxpl_id))
+
+    /* Local variables */
+    H5EA_iblock_t *iblock = NULL;       /* Pointer to index block */
+
+#ifdef QAK
+HDfprintf(stderr, "%s: Called\n", __func__);
+#endif /* QAK */
+
+    /* Sanity check */
+    HDassert(hdr);
+    HDassert(H5F_addr_defined(hdr->idx_blk_addr));
+
+    /* Protect index block */
+    if(NULL == (iblock = H5EA__iblock_protect(hdr, dxpl_id, H5AC_WRITE)))
+        H5E_THROW(H5E_CANTPROTECT, "unable to protect extensible array index block, address = %llu", (unsigned long_long)hdr->idx_blk_addr)
+
+    /* Iterate over data blocks & super blocks (not yet) */
+
+    /* Release index block's disk space */
+    if(H5MF_xfree(hdr->f, H5FD_MEM_EARRAY_IBLOCK, dxpl_id, hdr->idx_blk_addr, (hsize_t)iblock->size) < 0)
+        H5E_THROW(H5E_CANTFREE, "unable to free extensible array index block")
+
+CATCH
+    /* Finished deleting index block in metadata cache */
+    if(iblock && H5EA__iblock_unprotect(iblock, dxpl_id, H5AC__DIRTIED_FLAG | H5AC__DELETED_FLAG) < 0)
+        H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array index block")
+
+END_FUNC(PKG)   /* end H5EA__iblock_delete() */
+