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authorQuincey Koziol <koziol@hdfgroup.org>2019-01-06 04:31:42 (GMT)
committerM. Scot Breitenfeld <brtnfld@hdfgroup.org>2019-01-07 22:55:59 (GMT)
commitfed17ed3838d2cf73f8848c9d340a9139c0c02dc (patch)
tree32ff8b32b33a2947c27cbff5a05baee35c23d58b /src/H5FDmpio.c
parent5dfe00629588a54dbfb6f2d09dfbd88177e37cc2 (diff)
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HDFFV-10625 -- Implemented a process-0 read and then broadcast for collective read of full (HS_ALL), contiguous, atomic datasets by all the processes in the file communicator.
Diffstat (limited to 'src/H5FDmpio.c')
-rw-r--r--src/H5FDmpio.c43
1 files changed, 37 insertions, 6 deletions
diff --git a/src/H5FDmpio.c b/src/H5FDmpio.c
index d160858..3ab90aa 100644
--- a/src/H5FDmpio.c
+++ b/src/H5FDmpio.c
@@ -1354,6 +1354,7 @@ H5FD__mpio_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type,
int n;
#endif
hbool_t use_view_this_time = FALSE;
+ hbool_t rank0_bcast = FALSE; /* If read-with-rank0-and-bcast flag was used */
herr_t ret_value = SUCCEED;
FUNC_ENTER_STATIC
@@ -1437,8 +1438,25 @@ H5FD__mpio_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type,
if(H5FD_mpio_Debug[(int)'r'])
HDfprintf(stdout, "%s: doing MPI collective IO\n", FUNC);
#endif
- if(MPI_SUCCESS != (mpi_code = MPI_File_read_at_all(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat)))
- HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at_all failed", mpi_code)
+ /* Check whether we should read from rank 0 and broadcast to other ranks */
+ if(H5CX_get_mpio_rank0_bcast()) {
+#ifdef H5FDmpio_DEBUG
+ if(H5FD_mpio_Debug[(int)'r'])
+ HDfprintf(stdout, "%s: doing read-rank0-and-MPI_Bcast\n", FUNC);
+#endif
+ /* Indicate path we've taken */
+ rank0_bcast = TRUE;
+
+ /* Read on rank 0 Bcast to other ranks */
+ if(file->mpi_rank == 0)
+ if(MPI_SUCCESS != (mpi_code = MPI_File_read_at(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat)))
+ HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at failed", mpi_code)
+ if(MPI_SUCCESS != (mpi_code = MPI_Bcast(buf, size_i, buf_type, 0, file->comm)))
+ HMPI_GOTO_ERROR(FAIL, "MPI_Bcast failed", mpi_code)
+ } /* end if */
+ else
+ if(MPI_SUCCESS != (mpi_code = MPI_File_read_at_all(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat)))
+ HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at_all failed", mpi_code)
} /* end if */
else {
#ifdef H5FDmpio_DEBUG
@@ -1460,13 +1478,26 @@ H5FD__mpio_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type,
if(MPI_SUCCESS != (mpi_code = MPI_File_read_at(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat)))
HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at failed", mpi_code)
- /* How many bytes were actually read? */
+ /* Only retrieve bytes read if this rank _actually_ participated in I/O */
+ if(!rank0_bcast || (rank0_bcast && file->mpi_rank == 0) ) {
+ /* How many bytes were actually read? */
#if MPI_VERSION >= 3
- if(MPI_SUCCESS != (mpi_code = MPI_Get_elements_x(&mpi_stat, buf_type, &bytes_read)))
+ if(MPI_SUCCESS != (mpi_code = MPI_Get_elements_x(&mpi_stat, buf_type, &bytes_read)))
#else
- if(MPI_SUCCESS != (mpi_code = MPI_Get_elements(&mpi_stat, MPI_BYTE, &bytes_read)))
+ if(MPI_SUCCESS != (mpi_code = MPI_Get_elements(&mpi_stat, MPI_BYTE, &bytes_read)))
#endif
- HMPI_GOTO_ERROR(FAIL, "MPI_Get_elements failed", mpi_code)
+ HMPI_GOTO_ERROR(FAIL, "MPI_Get_elements failed", mpi_code)
+ } /* end if */
+
+ /* If the rank0-bcast feature was used, broadcast the # of bytes read to
+ * other ranks, which didn't perform any I/O.
+ */
+ /* NOTE: This could be optimized further to be combined with the broadcast
+ * of the data. (QAK - 2019/1/2)
+ */
+ if(rank0_bcast)
+ if(MPI_SUCCESS != MPI_Bcast(&bytes_read, 1, MPI_LONG_LONG, 0, file->comm))
+ HMPI_GOTO_ERROR(FAIL, "MPI_Bcast failed", 0)
/* Get the type's size */
#if MPI_VERSION >= 3