summaryrefslogtreecommitdiffstats
path: root/src/H5FDonion.c
diff options
context:
space:
mode:
authorDana Robinson <43805+derobins@users.noreply.github.com>2022-08-02 19:54:40 (GMT)
committerGitHub <noreply@github.com>2022-08-02 19:54:40 (GMT)
commitfcf41b3cd60df51af9be529e379a9dd6c488d088 (patch)
treee486d5f8254a33b978c34069b9810ce171ba7c2c /src/H5FDonion.c
parentea13de1bb0aba8a97c75f10343dc4c792193b215 (diff)
downloadhdf5-fcf41b3cd60df51af9be529e379a9dd6c488d088.zip
hdf5-fcf41b3cd60df51af9be529e379a9dd6c488d088.tar.gz
hdf5-fcf41b3cd60df51af9be529e379a9dd6c488d088.tar.bz2
Onion VFD (#1953)
* Onion VFD feature * Fixes onion VFD errors with non-sec2 backing store VFDs * Disables the onion VFD tests w/ ph5diff * Disables non-sec2 VFDs as onion VFD backing stores * Committing clang-format changes * Formatted source * Typo * Adds onion VFD tools tests to CMake * Fixes for v16 API compatibility * Memset structs to avoid bad frees on errors * H5Dwrite() calls now use H5T_NATIVE_INT as the memory type vs LE * Properly decodes checksums on BE machines * Be more careful about uint64_t to haddr_t/hsize_t conversions * Another fix for BE data comparison * Removed double underscores from onion constants * Replace hard-coded onion header string w/ constant * Fixes cleanup paths in H5FD__onion_ingest_history() * Fixed use of size_t revision numbers * Fix h5dump revision count format string Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Diffstat (limited to 'src/H5FDonion.c')
-rw-r--r--src/H5FDonion.c1762
1 files changed, 1762 insertions, 0 deletions
diff --git a/src/H5FDonion.c b/src/H5FDonion.c
new file mode 100644
index 0000000..23ea624
--- /dev/null
+++ b/src/H5FDonion.c
@@ -0,0 +1,1762 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Onion Virtual File Driver (VFD)
+ *
+ * Purpose: Provide in-file provenance and revision/version control.
+ */
+
+/* This source code file is part of the H5FD driver module */
+#include "H5FDdrvr_module.h"
+
+#include "H5private.h" /* Generic Functions */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5Fprivate.h" /* Files */
+#include "H5FDprivate.h" /* File drivers */
+#include "H5FDonion.h" /* Onion file driver */
+#include "H5FDonion_priv.h" /* Onion file driver internals */
+#include "H5FDsec2.h" /* Sec2 file driver */
+#include "H5FLprivate.h" /* Free Lists */
+#include "H5Iprivate.h" /* IDs */
+#include "H5MMprivate.h" /* Memory management */
+
+/* The driver identification number, initialized at runtime */
+static hid_t H5FD_ONION_g = 0;
+
+/******************************************************************************
+ *
+ * Structure: H5FD_onion_t
+ *
+ * Purpose: Store information required to manage an onionized file.
+ * This structure is created when such a file is "opened" and
+ * discarded when it is "closed".
+ *
+ * pu
+ *
+ * Instance of H5FD_t which contains fields common to all VFDs.
+ * It must be the first item in this structure, since at higher levels,
+ * this structure will be treated as an instance of H5FD_t.
+ *
+ * fa
+ *
+ * Instance of `H5FD_onion_fapl_info_t` containing the configuration data
+ * needed to "open" the HDF5 file.
+ *
+ * original_file
+ *
+ * VFD handle for the original HDF5 file.
+ *
+ * onion_file
+ *
+ * VFD handle for the onion file.
+ * NULL if not set to use the single, separate storage target.
+ *
+ * recovery_file
+ *
+ * VFD handle for the history recovery file. This file is a backup of
+ * the existing history when an existing onion file is opened in RW mode.
+ *
+ * recovery_file_name
+ *
+ * String allocated and populated on file-open in write mode and freed on
+ * file-close, stores the path/name of the 'recovery' file. The file
+ * created at this location is to be removed upon successful file-close
+ * from write mode.
+ *
+ * is_open_rw
+ *
+ * Remember whether the file was opened in a read-write mode.
+ *
+ * align_history_on_pages
+ *
+ * Remember whether onion-writes must be aligned to page boundaries.
+ *
+ * header
+ *
+ * In-memory copy of the onion history data header.
+ *
+ * history
+ *
+ * In-memory copy of the onion history.
+ *
+ * curr_rev_record
+ *
+ * Record for the currently open revision.
+ *
+ * rev_index
+ *
+ * Index for maintaining modified pages (RW mode only).
+ * Pointer is NULL when the file is not opened in write mode.
+ * Pointer is allocated on open and must be freed on close.
+ * Contents must be merged with the revision record's archival index prior
+ * to commitment of history to backing store.
+ *
+ * onion_eof
+ *
+ * Last byte in the onion file.
+ *
+ * origin_eof
+ *
+ * Size of the original HDF5 file.
+ *
+ * logical_eoa
+ *
+ * Address of first byte past addressed space in the logical 'file'
+ * presented by this VFD.
+ *
+ * logical_eof
+ *
+ * Address of first byte past last byte in the logical 'file' presented
+ * by this VFD.
+ * Must be copied into the revision record on close to write onion data.
+ *
+ ******************************************************************************
+ */
+typedef struct H5FD_onion_t {
+ H5FD_t pub;
+ H5FD_onion_fapl_info_t fa;
+ hbool_t is_open_rw;
+ hbool_t align_history_on_pages;
+
+ /* Onion-related files */
+ H5FD_t *original_file;
+ H5FD_t *onion_file;
+ H5FD_t *recovery_file;
+ char *recovery_file_name;
+
+ /* Onion data structures */
+ H5FD_onion_header_t header;
+ H5FD_onion_history_t history;
+ H5FD_onion_revision_record_t curr_rev_record;
+ H5FD_onion_revision_index_t *rev_index;
+
+ /* End of addresses and files */
+ haddr_t onion_eof;
+ haddr_t origin_eof;
+ haddr_t logical_eoa;
+ haddr_t logical_eof;
+} H5FD_onion_t;
+
+H5FL_DEFINE_STATIC(H5FD_onion_t);
+
+#define MAXADDR (((haddr_t)1 << (8 * sizeof(HDoff_t) - 1)) - 1)
+
+#define H5FD_CTL_GET_NUM_REVISIONS 20001
+
+/* Prototypes */
+static herr_t H5FD__onion_close(H5FD_t *);
+static haddr_t H5FD__onion_get_eoa(const H5FD_t *, H5FD_mem_t);
+static haddr_t H5FD__onion_get_eof(const H5FD_t *, H5FD_mem_t);
+static H5FD_t *H5FD__onion_open(const char *, unsigned int, hid_t, haddr_t);
+static herr_t H5FD__onion_read(H5FD_t *, H5FD_mem_t, hid_t, haddr_t, size_t, void *);
+static herr_t H5FD__onion_set_eoa(H5FD_t *, H5FD_mem_t, haddr_t);
+static herr_t H5FD__onion_term(void);
+static herr_t H5FD__onion_write(H5FD_t *, H5FD_mem_t, hid_t, haddr_t, size_t, const void *);
+
+static herr_t H5FD__onion_open_rw(H5FD_onion_t *, unsigned int, haddr_t, bool new_open);
+static herr_t H5FD__onion_sb_encode(H5FD_t *_file, char *name /*out*/, unsigned char *buf /*out*/);
+static herr_t H5FD__onion_sb_decode(H5FD_t *_file, const char *name, const unsigned char *buf);
+static hsize_t H5FD__onion_sb_size(H5FD_t *_file);
+static herr_t H5FD__onion_ctl(H5FD_t *_file, uint64_t op_code, uint64_t flags,
+ const void H5_ATTR_UNUSED *input, void H5_ATTR_UNUSED **output);
+static herr_t H5FD__get_onion_revision_count(H5FD_t *file, uint64_t *revision_count);
+
+/* Temporary */
+H5_DLL herr_t H5FD__onion_write_final_history(H5FD_onion_t *file);
+
+static const H5FD_class_t H5FD_onion_g = {
+ H5FD_CLASS_VERSION, /* struct version */
+ H5FD_ONION_VALUE, /* value */
+ "onion", /* name */
+ MAXADDR, /* maxaddr */
+ H5F_CLOSE_WEAK, /* fc_degree */
+ H5FD__onion_term, /* terminate */
+ H5FD__onion_sb_size, /* sb_size */
+ H5FD__onion_sb_encode, /* sb_encode */
+ H5FD__onion_sb_decode, /* sb_decode */
+ sizeof(H5FD_onion_fapl_info_t), /* fapl_size */
+ NULL, /* fapl_get */
+ NULL, /* fapl_copy */
+ NULL, /* fapl_free */
+ 0, /* dxpl_size */
+ NULL, /* dxpl_copy */
+ NULL, /* dxpl_free */
+ H5FD__onion_open, /* open */
+ H5FD__onion_close, /* close */
+ NULL, /* cmp */
+ NULL, /* query */
+ NULL, /* get_type_map */
+ NULL, /* alloc */
+ NULL, /* free */
+ H5FD__onion_get_eoa, /* get_eoa */
+ H5FD__onion_set_eoa, /* set_eoa */
+ H5FD__onion_get_eof, /* get_eof */
+ NULL, /* get_handle */
+ H5FD__onion_read, /* read */
+ H5FD__onion_write, /* write */
+ NULL, /* read_vector */
+ NULL, /* write_vector */
+ NULL, /* read_selection */
+ NULL, /* write_selection */
+ NULL, /* flush */
+ NULL, /* truncate */
+ NULL, /* lock */
+ NULL, /* unlock */
+ NULL, /* del */
+ H5FD__onion_ctl, /* ctl */
+ H5FD_FLMAP_DICHOTOMY /* fl_map */
+};
+
+/*-----------------------------------------------------------------------------
+ * Function: H5FD_onion_init
+ *
+ * Purpose: Initialize this driver by registering the driver with the
+ * library.
+ *
+ * Return: Success: The driver ID for the onion driver.
+ * Failure: Negative
+ *-----------------------------------------------------------------------------
+ */
+hid_t
+H5FD_onion_init(void)
+{
+ hid_t ret_value = H5I_INVALID_HID;
+
+ FUNC_ENTER_NOAPI_NOERR
+
+ if (H5I_VFL != H5I_get_type(H5FD_ONION_g))
+ H5FD_ONION_g = H5FD_register(&H5FD_onion_g, sizeof(H5FD_class_t), FALSE);
+
+ /* Set return value */
+ ret_value = H5FD_ONION_g;
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5FD_onion_init() */
+
+/*-----------------------------------------------------------------------------
+ * Function: H5FD__onion_term
+ *
+ * Purpose: Shut down the Onion VFD.
+ *
+ * Returns: SUCCEED (Can't fail)
+ *-----------------------------------------------------------------------------
+ */
+static herr_t
+H5FD__onion_term(void)
+{
+ FUNC_ENTER_PACKAGE_NOERR
+
+ /* Reset VFL ID */
+ H5FD_ONION_g = 0;
+
+ FUNC_LEAVE_NOAPI(SUCCEED);
+
+} /* end H5FD__onion_term() */
+
+/*-----------------------------------------------------------------------------
+ * Function: H5Pget_fapl_onion
+ *
+ * Purpose: Copy the Onion configuration information from the FAPL at
+ * `fapl_id` to the destination pointer `fa_out`.
+ *
+ * Return: Success: Non-negative value (SUCCEED).
+ * Failure: Negative value (FAIL).
+ *-----------------------------------------------------------------------------
+ */
+herr_t
+H5Pget_fapl_onion(hid_t fapl_id, H5FD_onion_fapl_info_t *fa_out)
+{
+ const H5FD_onion_fapl_info_t *info_ptr = NULL;
+ H5P_genplist_t *plist = NULL;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE2("e", "i*!", fapl_id, fa_out);
+
+ if (NULL == fa_out)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "NULL info-out pointer")
+
+ if (NULL == (plist = H5P_object_verify(fapl_id, H5P_FILE_ACCESS)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Not a valid FAPL ID")
+
+ if (H5FD_ONION != H5P_peek_driver(plist))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Incorrect VFL driver")
+
+ if (NULL == (info_ptr = (const H5FD_onion_fapl_info_t *)H5P_peek_driver_info(plist)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "bad VFL driver info")
+
+ HDmemcpy(fa_out, info_ptr, sizeof(H5FD_onion_fapl_info_t));
+
+done:
+ FUNC_LEAVE_API(ret_value)
+
+} /* end H5Pget_fapl_onion() */
+
+/*-----------------------------------------------------------------------------
+ * Function: H5Pset_fapl_onion
+ *
+ * Purpose Set the file access property list at `fapl_id` to use the
+ * Onion virtual file driver with the given configuration.
+ * The info structure may be modified or deleted after this call,
+ * as its contents are copied into the FAPL.
+ *
+ * Return: Success: Non-negative value (SUCCEED).
+ * Failure: Negative value (FAIL).
+ *-----------------------------------------------------------------------------
+ */
+herr_t
+H5Pset_fapl_onion(hid_t fapl_id, const H5FD_onion_fapl_info_t *fa)
+{
+ H5P_genplist_t *fapl = NULL;
+ H5P_genplist_t *backing_fapl = NULL;
+ hid_t backing_vfd_id = H5I_INVALID_HID;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE2("e", "i*!", fapl_id, fa);
+
+ if (NULL == (fapl = H5P_object_verify(fapl_id, H5P_FILE_ACCESS)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Not a valid FAPL ID");
+ if (NULL == fa)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "NULL info pointer");
+ if (H5FD_ONION_FAPL_INFO_VERSION_CURR != fa->version)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid info version");
+ if (!POWER_OF_TWO(fa->page_size))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid info page size");
+ if (fa->page_size < 1)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid info page size");
+
+ if (H5P_DEFAULT == fa->backing_fapl_id) {
+ if (NULL == (backing_fapl = H5P_object_verify(H5P_FILE_ACCESS_DEFAULT, H5P_FILE_ACCESS)))
+ HGOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL, "invalid backing fapl id");
+ }
+ else {
+ if (NULL == (backing_fapl = H5P_object_verify(fa->backing_fapl_id, H5P_FILE_ACCESS)))
+ HGOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL, "invalid backing fapl id");
+ }
+
+ /* The only backing fapl that is currently supported is sec2 */
+ if ((backing_vfd_id = H5P_peek_driver(backing_fapl)) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTGET, FAIL, "Can't get VFD from fapl");
+ if (backing_vfd_id != H5FD_SEC2)
+ HGOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL, "Onion VFD only supports sec2 backing store");
+
+ if (H5P_set_driver(fapl, H5FD_ONION, (const void *)fa, NULL) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTSET, FAIL, "Can't set the onion VFD");
+
+done:
+ FUNC_LEAVE_API(ret_value)
+} /* end H5Pset_fapl_onion() */
+
+/*-------------------------------------------------------------------------
+ * Function: H5FD__onion_sb_size
+ *
+ * Purpose: Returns the size of the private information to be stored in
+ * the superblock.
+ *
+ * Return: Success: The super block driver data size
+ * Failure: never fails
+ *-------------------------------------------------------------------------
+ */
+static hsize_t
+H5FD__onion_sb_size(H5FD_t *_file)
+{
+ H5FD_onion_t *file = (H5FD_onion_t *)_file;
+ hsize_t ret_value = 0;
+
+ FUNC_ENTER_PACKAGE_NOERR
+
+ /* Sanity check */
+ HDassert(file);
+ HDassert(file->original_file);
+
+ if (file->original_file)
+ ret_value = H5FD_sb_size(file->original_file);
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5FD__onion_sb_size */
+
+/*-------------------------------------------------------------------------
+ * Function: H5FD__onion_sb_encode
+ *
+ * Purpose: Encodes the superblock information for this driver
+ *
+ * Return: SUCCEED/FAIL
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FD__onion_sb_encode(H5FD_t *_file, char *name /*out*/, unsigned char *buf /*out*/)
+{
+ H5FD_onion_t *file = (H5FD_onion_t *)_file;
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_PACKAGE
+
+ /* Sanity check */
+ HDassert(file);
+ HDassert(file->original_file);
+
+ if (file->original_file && H5FD_sb_encode(file->original_file, name, buf) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTENCODE, FAIL, "unable to encode the superblock in R/W file")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5FD__onion_sb_encode */
+
+/*-------------------------------------------------------------------------
+ * Function: H5FD__onion_sb_decode
+ *
+ * Purpose: Decodes the superblock information for this driver
+ *
+ * Return: SUCCEED/FAIL
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FD__onion_sb_decode(H5FD_t *_file, const char *name, const unsigned char *buf)
+{
+ H5FD_onion_t *file = (H5FD_onion_t *)_file;
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_PACKAGE
+
+ /* Sanity check */
+ HDassert(file);
+ HDassert(file->original_file);
+
+ if (H5FD_sb_load(file->original_file, name, buf) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTDECODE, FAIL, "unable to decode the superblock in R/W file")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5FD__onion_sb_decode */
+
+/*-----------------------------------------------------------------------------
+ * Write in-memory revision record to appropriate backing file.
+ * Update information in other in-memory components.
+ *-----------------------------------------------------------------------------
+ */
+static herr_t
+H5FD__onion_commit_new_revision_record(H5FD_onion_t *file)
+{
+ uint32_t checksum = 0; /* required */
+ size_t size = 0;
+ haddr_t phys_addr = 0; /* offset in history file to record start */
+ unsigned char *buf = NULL;
+ herr_t ret_value = SUCCEED;
+ H5FD_onion_revision_record_t *rec = &file->curr_rev_record;
+ H5FD_onion_history_t *history = &file->history;
+ H5FD_onion_record_loc_t *new_list = NULL;
+
+ time_t rawtime;
+ struct tm *info;
+
+ FUNC_ENTER_PACKAGE
+
+ HDtime(&rawtime);
+ info = HDgmtime(&rawtime);
+ HDstrftime(rec->time_of_creation, sizeof(rec->time_of_creation), "%Y%m%dT%H%M%SZ", info);
+
+ rec->logical_eof = file->logical_eof;
+
+ if ((TRUE == file->is_open_rw) && (H5FD__onion_merge_revision_index_into_archival_index(
+ file->rev_index, &file->curr_rev_record.archival_index) < 0))
+ HGOTO_ERROR(H5E_VFL, H5E_INTERNAL, FAIL, "unable to update index to write")
+
+ if (NULL == (buf = H5MM_malloc(H5FD_ONION_ENCODED_SIZE_REVISION_RECORD + (size_t)rec->comment_size +
+ (H5FD_ONION_ENCODED_SIZE_INDEX_ENTRY * rec->archival_index.n_entries))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate buffer for encoded revision record")
+
+ if (0 == (size = H5FD__onion_revision_record_encode(rec, buf, &checksum)))
+ HGOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL, "problem encoding revision record")
+
+ phys_addr = file->onion_eof;
+ if (H5FD_set_eoa(file->onion_file, H5FD_MEM_DRAW, phys_addr + size) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTSET, FAIL, "can't modify EOA for new revision record")
+ if (H5FD_write(file->onion_file, H5FD_MEM_DRAW, phys_addr, size, buf) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_WRITEERROR, FAIL, "can't write new revision record")
+
+ file->onion_eof = phys_addr + size;
+ if (TRUE == file->align_history_on_pages)
+ file->onion_eof = (file->onion_eof + (file->header.page_size - 1)) & (~(file->header.page_size - 1));
+
+ /* Update history info to accommodate new revision */
+
+ if (history->n_revisions == 0) {
+ unsigned char *ptr = buf; /* re-use buffer space to compute checksum */
+
+ HDassert(history->record_locs == NULL);
+ history->n_revisions = 1;
+ if (NULL == (history->record_locs = H5MM_calloc(sizeof(H5FD_onion_record_loc_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate temporary record pointer list")
+
+ history->record_locs[0].phys_addr = phys_addr;
+ history->record_locs[0].record_size = size;
+ UINT64ENCODE(ptr, phys_addr);
+ UINT64ENCODE(ptr, size);
+ history->record_locs[0].checksum = H5_checksum_fletcher32(buf, (size_t)(ptr - buf));
+ /* TODO: size-reset belongs where? */
+ file->header.history_size += H5FD_ONION_ENCODED_SIZE_RECORD_POINTER;
+ } /* end if no extant revisions in history */
+ else {
+ unsigned char *ptr = buf; /* re-use buffer space to compute checksum */
+
+ HDassert(history->record_locs != NULL);
+
+ if (NULL == (new_list = H5MM_calloc((history->n_revisions + 1) * sizeof(H5FD_onion_record_loc_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "unable to resize record pointer list")
+ HDmemcpy(new_list, history->record_locs, sizeof(H5FD_onion_record_loc_t) * history->n_revisions);
+ H5MM_xfree(history->record_locs);
+ history->record_locs = new_list;
+ new_list = NULL;
+ history->record_locs[history->n_revisions].phys_addr = phys_addr;
+ history->record_locs[history->n_revisions].record_size = size;
+ UINT64ENCODE(ptr, phys_addr);
+ UINT64ENCODE(ptr, size);
+ history->record_locs[history->n_revisions].checksum =
+ H5_checksum_fletcher32(buf, (size_t)(ptr - buf));
+
+ file->header.history_size += H5FD_ONION_ENCODED_SIZE_RECORD_POINTER;
+ history->n_revisions += 1;
+ } /* end if one or more revisions present in history */
+
+ file->header.history_addr = file->onion_eof;
+
+done:
+ H5MM_xfree(buf);
+ H5MM_xfree(new_list);
+
+ FUNC_LEAVE_NOAPI(ret_value);
+} /* end H5FD__onion_commit_new_revision_record() */
+
+/*-----------------------------------------------------------------------------
+ * Function: H5FD__onion_close
+ *
+ * Purpose: Close an onionized file
+ *
+ * Return: SUCCEED/FAIL
+ *-----------------------------------------------------------------------------
+ */
+static herr_t
+H5FD__onion_close(H5FD_t *_file)
+{
+ H5FD_onion_t *file = (H5FD_onion_t *)_file;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE
+
+ HDassert(file);
+
+ if (H5FD_ONION_STORE_TARGET_ONION == file->fa.store_target) {
+
+ HDassert(file->onion_file);
+
+ if (file->is_open_rw) {
+
+ HDassert(file->recovery_file);
+
+ if (H5FD__onion_commit_new_revision_record(file) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_WRITEERROR, FAIL, "Can't write revision record to backing store")
+
+ if (H5FD__onion_write_final_history(file) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_WRITEERROR, FAIL, "Can't write history to backing store")
+
+ /* Unset write-lock flag and write header */
+ if (file->is_open_rw)
+ file->header.flags &= (uint32_t)~H5FD_ONION_HEADER_FLAG_WRITE_LOCK;
+ if (H5FD__onion_write_header(&(file->header), file->onion_file) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_WRITEERROR, FAIL, "Can't write updated header to backing store")
+ }
+ }
+ else if (H5FD_ONION_STORE_TARGET_H5 == file->fa.store_target)
+ HGOTO_ERROR(H5E_VFL, H5E_UNSUPPORTED, FAIL, "hdf5 store-target not supported")
+ else
+ HGOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL, "invalid history target")
+
+done:
+
+ /* Destroy things as best we can, even if there were earlier errors */
+ if (file->original_file)
+ if (H5FD_close(file->original_file) < 0)
+ HDONE_ERROR(H5E_VFL, H5E_CANTRELEASE, FAIL, "can't close backing canon file")
+ if (file->onion_file)
+ if (H5FD_close(file->onion_file) < 0)
+ HDONE_ERROR(H5E_VFL, H5E_CANTRELEASE, FAIL, "can't close backing onion file")
+ if (file->recovery_file) {
+ if (H5FD_close(file->recovery_file) < 0)
+ HDONE_ERROR(H5E_VFL, H5E_CANTRELEASE, FAIL, "can't close backing recovery file")
+ /* TODO: Use the VFD's del callback instead of remove (this requires
+ * storing a copy of the fapl that was used to open it)
+ */
+ HDremove(file->recovery_file_name);
+ }
+ if (file->rev_index)
+ if (H5FD__onion_revision_index_destroy(file->rev_index) < 0)
+ HDONE_ERROR(H5E_VFL, H5E_CANTRELEASE, FAIL, "can't close revision index")
+
+ H5MM_xfree(file->recovery_file_name);
+ H5MM_xfree(file->history.record_locs);
+ H5MM_xfree(file->curr_rev_record.comment);
+ H5MM_xfree(file->curr_rev_record.archival_index.list);
+
+ file = H5FL_FREE(H5FD_onion_t, file);
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5FD__onion_close() */
+
+/*-----------------------------------------------------------------------------
+ * Function: H5FD__onion_get_eoa
+ *
+ * Purpose: Get end-of-address address.
+ *
+ * Return: Address of first byte past the addressed space
+ *-----------------------------------------------------------------------------
+ */
+static haddr_t
+H5FD__onion_get_eoa(const H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type)
+{
+ const H5FD_onion_t *file = (const H5FD_onion_t *)_file;
+
+ FUNC_ENTER_PACKAGE_NOERR;
+
+ FUNC_LEAVE_NOAPI(file->logical_eoa)
+} /* end H5FD__onion_get_eoa() */
+
+/*-----------------------------------------------------------------------------
+ * Function: H5FD__onion_get_eof
+ *
+ * Purpose: Get end-of-file address.
+ *
+ * Return: Address of first byte past the file-end.
+ *-----------------------------------------------------------------------------
+ */
+static haddr_t
+H5FD__onion_get_eof(const H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type)
+{
+ const H5FD_onion_t *file = (const H5FD_onion_t *)_file;
+
+ FUNC_ENTER_PACKAGE_NOERR;
+
+ FUNC_LEAVE_NOAPI(file->logical_eof)
+} /* end H5FD__onion_get_eof() */
+
+/*-----------------------------------------------------------------------------
+ * Sanitize the backing FAPL ID
+ *-----------------------------------------------------------------------------
+ */
+static inline hid_t
+H5FD__onion_get_legit_fapl_id(hid_t fapl_id)
+{
+ if (H5P_DEFAULT == fapl_id)
+ return H5P_FILE_ACCESS_DEFAULT;
+ else if (TRUE == H5P_isa_class(fapl_id, H5P_FILE_ACCESS))
+ return fapl_id;
+ else
+ return H5I_INVALID_HID;
+}
+
+/*-----------------------------------------------------------------------------
+ * Function: H5FD_onion_create_truncate_onion
+ *
+ * Purpose: Create/truncate HDF5 and onion data for a fresh file
+ *
+ * Special open operation required to instantiate the canonical file and
+ * history simultaneously. If successful, the required backing files are
+ * craeated and given initial population on the backing store, and the Onion
+ * virtual file handle is set; open effects a write-mode open.
+ *
+ * Cannot create 'template' history and proceed with normal write-mode open,
+ * as this would in effect create an empty first revision, making the history
+ * unintuitive. (create file -> initialize and commit empty first revision
+ * (revision 0); any data written to file during the 'create' open, as seen by
+ * the user, would be in the second revision (revision 1).)
+ *
+ * Return: SUCCEED/FAIL
+ *-----------------------------------------------------------------------------
+ */
+static herr_t
+H5FD__onion_create_truncate_onion(H5FD_onion_t *file, const char *filename, const char *name_onion,
+ const char *recovery_file_nameery, unsigned int flags, haddr_t maxaddr)
+{
+ hid_t backing_fapl_id = H5I_INVALID_HID;
+ H5FD_onion_header_t *hdr = NULL;
+ H5FD_onion_history_t *history = NULL;
+ H5FD_onion_revision_record_t *rec = NULL;
+ unsigned char *buf = NULL;
+ size_t size = 0;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE;
+
+ HDassert(file != NULL);
+
+ hdr = &file->header;
+ history = &file->history;
+ rec = &file->curr_rev_record;
+
+ hdr->flags = H5FD_ONION_HEADER_FLAG_WRITE_LOCK;
+ if (H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_DIVERGENT_HISTORY & file->fa.creation_flags)
+ hdr->flags |= H5FD_ONION_HEADER_FLAG_DIVERGENT_HISTORY;
+ if (H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT & file->fa.creation_flags)
+ hdr->flags |= H5FD_ONION_HEADER_FLAG_PAGE_ALIGNMENT;
+
+ hdr->origin_eof = 0;
+
+ backing_fapl_id = H5FD__onion_get_legit_fapl_id(file->fa.backing_fapl_id);
+ if (H5I_INVALID_HID == backing_fapl_id)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid backing FAPL ID")
+
+ /* Create backing files for onion history */
+
+ if (NULL == (file->original_file = H5FD_open(filename, flags, backing_fapl_id, maxaddr)))
+ HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "cannot open the backing file")
+
+ if (NULL == (file->onion_file = H5FD_open(name_onion, flags, backing_fapl_id, maxaddr)))
+ HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "cannot open the backing onion file")
+
+ if (NULL == (file->recovery_file = H5FD_open(recovery_file_nameery, flags, backing_fapl_id, maxaddr)))
+ HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "cannot open the backing file")
+
+ /* Write "empty" .h5 file contents (signature ONIONEOF) */
+
+ if (H5FD_set_eoa(file->original_file, H5FD_MEM_DRAW, 8) < 0)
+ HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "can't extend EOA")
+ if (H5FD_write(file->original_file, H5FD_MEM_DRAW, 0, 8, "ONIONEOF") < 0)
+ HGOTO_ERROR(H5E_FILE, H5E_WRITEERROR, FAIL, "cannot write header to the backing h5 file")
+
+ /* Write nascent history (with no revisions) to "recovery" */
+
+ if (NULL == (buf = H5MM_malloc(H5FD_ONION_ENCODED_SIZE_HISTORY)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate buffer")
+ size = H5FD__onion_history_encode(history, buf, &history->checksum);
+ if (H5FD_ONION_ENCODED_SIZE_HISTORY != size)
+ HGOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL, "can't encode history")
+ if (H5FD_set_eoa(file->recovery_file, H5FD_MEM_DRAW, size) < 0)
+ HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "can't extend EOA")
+ if (H5FD_write(file->recovery_file, H5FD_MEM_DRAW, 0, size, buf) < 0)
+ HGOTO_ERROR(H5E_FILE, H5E_WRITEERROR, FAIL, "cannot write history to the backing recovery file")
+ hdr->history_size = size; /* record for later use */
+ H5MM_xfree(buf);
+ buf = NULL;
+
+ /* Write history header with "no" history.
+ * Size of the "recovery" history recorded for later use on close.
+ */
+
+ if (NULL == (buf = H5MM_malloc(H5FD_ONION_ENCODED_SIZE_HEADER)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate buffer")
+ size = H5FD__onion_header_encode(hdr, buf, &hdr->checksum);
+ if (H5FD_ONION_ENCODED_SIZE_HEADER != size)
+ HGOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL, "can't encode history header")
+ if (H5FD_set_eoa(file->onion_file, H5FD_MEM_DRAW, size) < 0)
+ HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "can't extend EOA")
+ if (H5FD_write(file->onion_file, H5FD_MEM_DRAW, 0, size, buf) < 0)
+ HGOTO_ERROR(H5E_FILE, H5E_WRITEERROR, FAIL, "cannot write header to the backing onion file")
+ file->onion_eof = (haddr_t)size;
+ if (TRUE == file->align_history_on_pages)
+ file->onion_eof = (file->onion_eof + (hdr->page_size - 1)) & (~(hdr->page_size - 1));
+
+ rec->archival_index.list = NULL;
+
+ if (NULL == (file->rev_index = H5FD__onion_revision_index_init(file->fa.page_size)))
+ HGOTO_ERROR(H5E_VFL, H5E_CANTINIT, FAIL, "can't initialize revision index")
+
+done:
+ H5MM_xfree(buf);
+
+ if (FAIL == ret_value)
+ HDremove(recovery_file_nameery); /* destroy new temp file, if 'twas created */
+
+ FUNC_LEAVE_NOAPI(ret_value);
+} /* end H5FD__onion_create_truncate_onion() */
+
+static herr_t
+H5FD__onion_remove_unused_symbols(char *s)
+{
+ char *d = s;
+
+ FUNC_ENTER_PACKAGE_NOERR;
+
+ do {
+ while (*d == '{' || *d == '}' || *d == ' ') {
+ ++d;
+ }
+ } while ((*s++ = *d++));
+
+ FUNC_LEAVE_NOAPI(SUCCEED);
+}
+
+static herr_t
+H5FD__onion_parse_config_str(const char *config_str, H5FD_onion_fapl_info_t *fa)
+{
+ char *config_str_copy = NULL;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE;
+
+ if (!HDstrcmp(config_str, ""))
+ HGOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL, "configure string can't be empty")
+
+ /* Initialize to the default values */
+ fa->version = H5FD_ONION_FAPL_INFO_VERSION_CURR;
+ fa->backing_fapl_id = H5P_DEFAULT;
+ fa->page_size = 4;
+ fa->store_target = H5FD_ONION_STORE_TARGET_ONION;
+ fa->revision_num = H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST;
+ fa->force_write_open = 0;
+ fa->creation_flags = 0;
+ HDstrcpy(fa->comment, "initial comment");
+
+ /* If a single integer is passed in as a string, it's a shortcut for the tools
+ * (h5repack, h5diff, h5dump). Otherwise, the string should have curly brackets,
+ * e.g. {revision_num: 2; page_size: 4;}
+ */
+ if (config_str[0] != '{')
+ fa->revision_num = (uint64_t)HDstrtoull(config_str, NULL, 10);
+ else {
+ char *token1 = NULL, *token2 = NULL;
+
+ /* Duplicate the configure string since strtok will mess with it */
+ if (NULL == (config_str_copy = H5MM_strdup(config_str)))
+ HGOTO_ERROR(H5E_VFL, H5E_CANTALLOC, FAIL, "can't duplicate configure string")
+
+ /* Remove the curly brackets and space from the configure string */
+ H5FD__onion_remove_unused_symbols(config_str_copy);
+
+ /* The configure string can't be empty after removing the curly brackets */
+ if (!HDstrcmp(config_str_copy, ""))
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "configure string can't be empty")
+
+ token1 = HDstrtok(config_str_copy, ":");
+ token2 = HDstrtok(NULL, ";");
+
+ do {
+ if (token1 && token2) {
+ if (!HDstrcmp(token1, "version")) {
+ if (!HDstrcmp(token2, "H5FD_ONION_FAPL_INFO_VERSION_CURR"))
+ fa->version = H5FD_ONION_FAPL_INFO_VERSION_CURR;
+ }
+ else if (!HDstrcmp(token1, "backing_fapl_id")) {
+ if (!HDstrcmp(token2, "H5P_DEFAULT"))
+ fa->backing_fapl_id = H5P_DEFAULT;
+ else if (!strcmp(token2, "H5I_INVALID_HID"))
+ fa->backing_fapl_id = H5I_INVALID_HID;
+ else
+ fa->backing_fapl_id = HDstrtoll(token2, NULL, 10);
+ }
+ else if (!HDstrcmp(token1, "page_size")) {
+ fa->page_size = (uint32_t)HDstrtoul(token2, NULL, 10);
+ }
+ else if (!HDstrcmp(token1, "revision_num")) {
+ if (!HDstrcmp(token2, "H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST"))
+ fa->revision_num = H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST;
+ else
+ fa->revision_num = (uint64_t)HDstrtoull(token2, NULL, 10);
+ }
+ else if (!HDstrcmp(token1, "force_write_open")) {
+ fa->force_write_open = (uint8_t)HDstrtoul(token2, NULL, 10);
+ }
+ else if (!HDstrcmp(token1, "creation_flags")) {
+ fa->creation_flags = (uint8_t)HDstrtoul(token2, NULL, 10);
+ }
+ else if (!HDstrcmp(token1, "comment")) {
+ HDstrcpy(fa->comment, token2);
+ }
+ else
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "unknown token in the configure string: %s",
+ token1)
+ }
+
+ token1 = HDstrtok(NULL, ":");
+ token2 = HDstrtok(NULL, ";");
+ } while (token1);
+ }
+
+ if (H5P_DEFAULT == fa->backing_fapl_id || H5I_INVALID_HID == fa->backing_fapl_id) {
+ H5P_genclass_t *pclass; /* Property list class to modify */
+
+ if (NULL == (pclass = (H5P_genclass_t *)H5I_object_verify(H5P_FILE_ACCESS, H5I_GENPROP_CLS)))
+ HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a property list class");
+
+ /* Create the new property list */
+ if ((fa->backing_fapl_id = H5P_create_id(pclass, TRUE)) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTCREATE, FAIL, "unable to create property list");
+ }
+
+done:
+ H5MM_free(config_str_copy);
+
+ FUNC_LEAVE_NOAPI(ret_value);
+}
+
+/*-----------------------------------------------------------------------------
+ * Function: H5FD__onion_open
+ *
+ * Purpose: Open an onionized file
+ *
+ * Return: Success: A pointer to a new file data structure
+ * Failure: NULL
+ *-----------------------------------------------------------------------------
+ */
+static H5FD_t *
+H5FD__onion_open(const char *filename, unsigned flags, hid_t fapl_id, haddr_t maxaddr)
+{
+ H5P_genplist_t *plist = NULL;
+ H5FD_onion_t *file = NULL;
+ const H5FD_onion_fapl_info_t *fa = NULL;
+ H5FD_onion_fapl_info_t *new_fa = NULL;
+ const char *config_str = NULL;
+ hid_t backing_fapl_id = H5I_INVALID_HID;
+ char *name_onion = NULL;
+ char *recovery_file_nameery = NULL;
+ bool new_open = false;
+ haddr_t canon_eof = 0;
+ H5FD_t *ret_value = NULL;
+
+ FUNC_ENTER_PACKAGE
+
+ /* Check arguments */
+ if (!filename || !*filename)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "invalid file name")
+ if (0 == maxaddr || HADDR_UNDEF == maxaddr)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, NULL, "bogus maxaddr")
+ HDassert(H5P_DEFAULT != fapl_id);
+ if (NULL == (plist = (H5P_genplist_t *)H5I_object(fapl_id)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file access property list")
+
+ /* This VFD can be invoked by either H5Pset_fapl_onion() or
+ * H5Pset_driver_by_name(). When invoked by the former, there will be
+ * driver info to peek at.
+ */
+ fa = (const H5FD_onion_fapl_info_t *)H5P_peek_driver_info(plist);
+
+ if (NULL == fa) {
+ if (NULL == (config_str = H5P_peek_driver_config_str(plist)))
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, NULL, "missing VFL driver configure string")
+
+ /* Allocate a new onion fapl info struct and fill it from the
+ * configuration string
+ */
+ if (NULL == (new_fa = H5MM_calloc(sizeof(H5FD_onion_fapl_info_t))))
+ HGOTO_ERROR(H5E_VFL, H5E_CANTALLOC, NULL, "can't allocate memory for onion fapl info struct")
+ if (H5FD__onion_parse_config_str(config_str, new_fa) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, NULL, "failed to parse configure string")
+
+ fa = new_fa;
+ }
+
+ /* Check for unsupported target values */
+ if (H5FD_ONION_STORE_TARGET_H5 == fa->store_target)
+ HGOTO_ERROR(H5E_ARGS, H5E_UNSUPPORTED, NULL, "same-file storage not implemented")
+ else if (H5FD_ONION_STORE_TARGET_ONION != fa->store_target)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "invalid store target")
+
+ /* Allocate space for the file struct */
+ if (NULL == (file = H5FL_CALLOC(H5FD_onion_t)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "unable to allocate file struct")
+
+ /* Allocate space for onion VFD file names */
+ if (NULL == (name_onion = H5MM_malloc(sizeof(char) * (HDstrlen(filename) + 7))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "unable to allocate onion name string")
+ HDsnprintf(name_onion, HDstrlen(filename) + 7, "%s.onion", filename);
+
+ if (NULL == (recovery_file_nameery = H5MM_malloc(sizeof(char) * (HDstrlen(name_onion) + 10))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "unable to allocate recovery name string")
+ HDsnprintf(recovery_file_nameery, HDstrlen(name_onion) + 10, "%s.recovery", name_onion);
+ file->recovery_file_name = recovery_file_nameery;
+
+ if (NULL == (file->recovery_file_name = H5MM_malloc(sizeof(char) * (HDstrlen(name_onion) + 10))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "unable to allocate recovery name string")
+ HDsnprintf(file->recovery_file_name, HDstrlen(name_onion) + 10, "%s.recovery", name_onion);
+
+ /* Translate H5P_DEFAULT to a a real fapl ID, if necessary */
+ backing_fapl_id = H5FD__onion_get_legit_fapl_id(file->fa.backing_fapl_id);
+ if (H5I_INVALID_HID == backing_fapl_id)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "invalid backing FAPL ID");
+
+ /* Initialize file structure fields */
+
+ HDmemcpy(&(file->fa), fa, sizeof(H5FD_onion_fapl_info_t));
+
+ file->header.version = H5FD_ONION_HEADER_VERSION_CURR;
+ file->header.page_size = file->fa.page_size; /* guarded on FAPL-set */
+
+ file->history.version = H5FD_ONION_HISTORY_VERSION_CURR;
+
+ file->curr_rev_record.version = H5FD_ONION_REVISION_RECORD_VERSION_CURR;
+ file->curr_rev_record.archival_index.version = H5FD_ONION_ARCHIVAL_INDEX_VERSION_CURR;
+
+ /* Check that the page size is a power of two */
+ if ((fa->page_size == 0) || ((fa->page_size & (fa->page_size - 1)) != 0))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "page size is not a power of two")
+
+ /* Assign the page size */
+ double log2_page_size = HDlog2((double)(fa->page_size));
+ file->curr_rev_record.archival_index.page_size_log2 = (uint32_t)log2_page_size;
+
+ /* Proceed with open. */
+
+ if ((H5F_ACC_CREAT | H5F_ACC_TRUNC) & flags) {
+
+ /* Create a new onion file from scratch */
+
+ /* Set flags */
+ if (fa->creation_flags & H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT) {
+ file->header.flags |= H5FD_ONION_HEADER_FLAG_PAGE_ALIGNMENT;
+ file->align_history_on_pages = TRUE;
+ }
+
+ /* Truncate and create everything as necessary */
+ if (H5FD__onion_create_truncate_onion(file, filename, name_onion, file->recovery_file_name, flags,
+ maxaddr) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTCREATE, NULL, "unable to create/truncate onionized files")
+ file->is_open_rw = TRUE;
+ }
+ else {
+
+ /* Opening an existing onion file */
+
+ /* Open the existing file using the specified fapl */
+ if (NULL == (file->original_file = H5FD_open(filename, flags, backing_fapl_id, maxaddr)))
+ HGOTO_ERROR(H5E_VFL, H5E_CANTOPENFILE, NULL, "unable to open canonical file (does not exist?)")
+
+ /* Try to open any existing onion file */
+ H5E_BEGIN_TRY
+ {
+ file->onion_file = H5FD_open(name_onion, flags, backing_fapl_id, maxaddr);
+ }
+ H5E_END_TRY;
+
+ /* If that didn't work, create a new onion file */
+ /* TODO: Move to a new function */
+ if (NULL == file->onion_file) {
+ if (H5F_ACC_RDWR & flags) {
+ H5FD_onion_header_t *hdr = NULL;
+ H5FD_onion_history_t *history = NULL;
+ H5FD_onion_revision_record_t *rec = NULL;
+ unsigned char *head_buf = NULL;
+ unsigned char *hist_buf = NULL;
+ size_t size = 0;
+ size_t saved_size = 0;
+
+ HDassert(file != NULL);
+
+ hdr = &file->header;
+ history = &file->history;
+ rec = &file->curr_rev_record;
+
+ new_open = true;
+
+ if (H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_DIVERGENT_HISTORY & file->fa.creation_flags)
+ hdr->flags |= H5FD_ONION_HEADER_FLAG_DIVERGENT_HISTORY;
+ if (H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT & file->fa.creation_flags) {
+ hdr->flags |= H5FD_ONION_HEADER_FLAG_PAGE_ALIGNMENT;
+ file->align_history_on_pages = TRUE;
+ }
+
+ if (HADDR_UNDEF == (canon_eof = H5FD_get_eof(file->original_file, H5FD_MEM_DEFAULT))) {
+ HGOTO_ERROR(H5E_VFL, H5E_CANTINIT, NULL, "cannot get size of canonical file")
+ }
+ if (H5FD_set_eoa(file->original_file, H5FD_MEM_DRAW, canon_eof) < 0)
+ HGOTO_ERROR(H5E_FILE, H5E_CANTSET, NULL, "can't extend EOA")
+ hdr->origin_eof = canon_eof;
+ file->logical_eof = canon_eof;
+
+ backing_fapl_id = H5FD__onion_get_legit_fapl_id(file->fa.backing_fapl_id);
+
+ if (H5I_INVALID_HID == backing_fapl_id)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "invalid backing FAPL ID")
+
+ /* Create backing files for onion history */
+
+ if ((file->onion_file = H5FD_open(name_onion, (H5F_ACC_RDWR | H5F_ACC_CREAT | H5F_ACC_TRUNC),
+ backing_fapl_id, maxaddr)) == NULL) {
+ HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "cannot open the backing onion file")
+ }
+
+ /* Write history header with "no" history */
+ hdr->history_size = H5FD_ONION_ENCODED_SIZE_HISTORY; /* record for later use */
+ hdr->history_addr =
+ H5FD_ONION_ENCODED_SIZE_HEADER + 1; /* TODO: comment these 2 or do some other way */
+ head_buf = H5MM_malloc(H5FD_ONION_ENCODED_SIZE_HEADER);
+ if (NULL == head_buf)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "can't allocate buffer")
+ size = H5FD__onion_header_encode(hdr, head_buf, &hdr->checksum);
+ if (H5FD_ONION_ENCODED_SIZE_HEADER != size)
+ HGOTO_ERROR(H5E_VFL, H5E_BADVALUE, NULL, "can't encode history header")
+
+ hist_buf = H5MM_malloc(H5FD_ONION_ENCODED_SIZE_HISTORY);
+ if (NULL == hist_buf)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "can't allocate buffer")
+ saved_size = size;
+ history->n_revisions = 0;
+ size = H5FD__onion_history_encode(history, hist_buf, &history->checksum);
+ file->header.history_size = size; /* record for later use */
+ if (H5FD_ONION_ENCODED_SIZE_HISTORY != size) {
+ HGOTO_ERROR(H5E_VFL, H5E_BADVALUE, NULL, "can't encode history")
+ }
+ if (H5FD_set_eoa(file->onion_file, H5FD_MEM_DRAW, saved_size + size + 1) < 0)
+ HGOTO_ERROR(H5E_FILE, H5E_CANTSET, NULL, "can't extend EOA")
+
+ if (H5FD_write(file->onion_file, H5FD_MEM_DRAW, 0, saved_size, head_buf) < 0) {
+ HGOTO_ERROR(H5E_FILE, H5E_WRITEERROR, NULL,
+ "cannot write header to the backing onion file")
+ }
+
+ file->onion_eof = (haddr_t)saved_size;
+ if (TRUE == file->align_history_on_pages)
+ file->onion_eof = (file->onion_eof + (hdr->page_size - 1)) & (~(hdr->page_size - 1));
+
+ rec->archival_index.list = NULL;
+
+ file->header.history_addr = file->onion_eof;
+
+ /* Write nascent history (with no revisions) to the backing onion file */
+ if (H5FD_write(file->onion_file, H5FD_MEM_DRAW, saved_size + 1, size, hist_buf) < 0) {
+ HGOTO_ERROR(H5E_FILE, H5E_WRITEERROR, NULL,
+ "cannot write history to the backing onion file")
+ }
+
+ file->header.history_size = size; /* record for later use */
+
+ H5MM_xfree(head_buf);
+ H5MM_xfree(hist_buf);
+ }
+ else {
+ HGOTO_ERROR(H5E_VFL, H5E_CANTOPENFILE, NULL, "unable to open onion file (does not exist?).")
+ }
+ }
+
+ if (HADDR_UNDEF == (canon_eof = H5FD_get_eof(file->original_file, H5FD_MEM_DEFAULT))) {
+ HGOTO_ERROR(H5E_VFL, H5E_CANTINIT, NULL, "cannot get size of canonical file")
+ }
+ if (H5FD_set_eoa(file->original_file, H5FD_MEM_DRAW, canon_eof) < 0)
+ HGOTO_ERROR(H5E_FILE, H5E_CANTSET, NULL, "can't extend EOA")
+
+ /* Get the history header from the onion file */
+ if (H5FD__onion_ingest_header(&file->header, file->onion_file, 0) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTDECODE, NULL, "can't get history header from backing store")
+ file->align_history_on_pages =
+ (file->header.flags & H5FD_ONION_HEADER_FLAG_PAGE_ALIGNMENT) ? TRUE : FALSE;
+
+ if (H5FD_ONION_HEADER_FLAG_WRITE_LOCK & file->header.flags) {
+ /* Opening a file twice in write mode is an error */
+ HGOTO_ERROR(H5E_VFL, H5E_UNSUPPORTED, NULL, "Can't open file already opened in write-mode")
+ }
+ else {
+ /* Read in the history from the onion file */
+ if (H5FD__onion_ingest_history(&file->history, file->onion_file, file->header.history_addr,
+ file->header.history_size) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTDECODE, NULL, "can't get history from backing store")
+
+ /* Sanity check on revision ID */
+ if (fa->revision_num > file->history.n_revisions &&
+ fa->revision_num != H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "target revision ID out of range")
+
+ if (fa->revision_num == 0) {
+ file->curr_rev_record.logical_eof = canon_eof;
+ }
+ else if (file->history.n_revisions > 0 &&
+ H5FD__onion_ingest_revision_record(
+ &file->curr_rev_record, file->onion_file, &file->history,
+ MIN(fa->revision_num - 1, (file->history.n_revisions - 1))) < 0) {
+ HGOTO_ERROR(H5E_VFL, H5E_CANTDECODE, NULL, "can't get revision record from backing store")
+ }
+
+ if (H5F_ACC_RDWR & flags)
+ if (H5FD__onion_open_rw(file, flags, maxaddr, new_open) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTOPENFILE, NULL, "can't write-open write-locked file")
+ }
+
+ } /* End if opening existing file */
+
+ /* Copy comment from FAPL info, if one is given */
+ if ((H5F_ACC_RDWR | H5F_ACC_CREAT | H5F_ACC_TRUNC) & flags) {
+ if (fa->comment) {
+ /* Free the old comment */
+ file->curr_rev_record.comment = H5MM_xfree(file->curr_rev_record.comment);
+
+ /* TODO: Lengths of strings should be size_t */
+ file->curr_rev_record.comment_size = (uint32_t)HDstrlen(fa->comment) + 1;
+
+ if (NULL == (file->curr_rev_record.comment = H5MM_xstrdup(fa->comment)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "unable to allocate comment string")
+ }
+ }
+ file->origin_eof = file->header.origin_eof;
+ file->logical_eof = MAX(file->curr_rev_record.logical_eof, file->logical_eof);
+ file->logical_eoa = 0;
+
+ file->onion_eof = H5FD_get_eoa(file->onion_file, H5FD_MEM_DRAW);
+ if (TRUE == file->align_history_on_pages)
+ file->onion_eof = (file->onion_eof + (file->header.page_size - 1)) & (~(file->header.page_size - 1));
+
+ ret_value = (H5FD_t *)file;
+
+done:
+ H5MM_xfree(name_onion);
+ H5MM_xfree(recovery_file_nameery);
+
+ if (config_str && new_fa)
+ if (fa && fa->backing_fapl_id)
+ if (H5I_GENPROP_LST == H5I_get_type(fa->backing_fapl_id))
+ H5I_dec_app_ref(fa->backing_fapl_id);
+
+ if ((NULL == ret_value) && file) {
+
+ if (file->original_file)
+ if (H5FD_close(file->original_file) < 0)
+ HDONE_ERROR(H5E_VFL, H5E_CANTRELEASE, NULL, "can't destroy backing canon")
+ if (file->onion_file)
+ if (H5FD_close(file->onion_file) < 0)
+ HDONE_ERROR(H5E_VFL, H5E_CANTRELEASE, NULL, "can't destroy backing onion")
+ if (file->recovery_file)
+ if (H5FD_close(file->recovery_file) < 0)
+ HDONE_ERROR(H5E_VFL, H5E_CANTRELEASE, NULL, "can't destroy backing recov")
+
+ if (file->rev_index)
+ if (H5FD__onion_revision_index_destroy(file->rev_index) < 0)
+ HDONE_ERROR(H5E_VFL, H5E_CANTRELEASE, NULL, "can't destroy revision index")
+
+ H5MM_xfree(file->history.record_locs);
+
+ H5MM_xfree(file->recovery_file_name);
+ H5MM_xfree(file->curr_rev_record.comment);
+
+ H5FL_FREE(H5FD_onion_t, file);
+ }
+
+ H5MM_xfree(new_fa);
+
+ FUNC_LEAVE_NOAPI(ret_value);
+} /* end H5FD__onion_open() */
+
+/*-----------------------------------------------------------------------------
+ * Function: H5FD__onion_open_rw
+ *
+ * Purpose: Complete onion file-open, handling process for write mode.
+ *
+ * Creates recovery file if one does not exist.
+ * Initializes 'live' revision index.
+ * Force write-open is not yet supported (recovery provision) TODO
+ * Establishes write-lock in history header (sets lock flag).
+ *
+ * Return: SUCCEED/FAIL
+ *-----------------------------------------------------------------------------
+ */
+static herr_t
+H5FD__onion_open_rw(H5FD_onion_t *file, unsigned int flags, haddr_t maxaddr, bool new_open)
+{
+ unsigned char *buf = NULL;
+ size_t size = 0;
+ uint32_t checksum = 0;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE;
+
+ /* Guard against simultaneous write-open.
+ * TODO: support recovery open with force-write-open flag in FAPL info.
+ */
+
+ if (file->header.flags & H5FD_ONION_HEADER_FLAG_WRITE_LOCK)
+ HGOTO_ERROR(H5E_VFL, H5E_UNSUPPORTED, FAIL, "can't write-open write-locked file")
+
+ /* Copy history to recovery file */
+
+ if (NULL ==
+ (file->recovery_file = H5FD_open(file->recovery_file_name, (flags | H5F_ACC_CREAT | H5F_ACC_TRUNC),
+ file->fa.backing_fapl_id, maxaddr)))
+ HGOTO_ERROR(H5E_VFL, H5E_CANTOPENFILE, FAIL, "unable to create recovery file")
+
+ if (0 == (size = H5FD__onion_write_history(&file->history, file->recovery_file, 0, 0)))
+ HGOTO_ERROR(H5E_VFL, H5E_WRITEERROR, FAIL, "can't write history to recovery file")
+ if (size != file->header.history_size)
+ HGOTO_ERROR(H5E_VFL, H5E_WRITEERROR, FAIL, "written history differed from expected size")
+
+ /* Set write-lock flag in onion header */
+
+ if (NULL == (buf = H5MM_malloc(H5FD_ONION_ENCODED_SIZE_HEADER)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate space for encoded buffer")
+
+ file->header.flags |= H5FD_ONION_HEADER_FLAG_WRITE_LOCK;
+
+ if (0 == (size = H5FD__onion_header_encode(&file->header, buf, &checksum)))
+ HGOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL, "problem encoding history header")
+
+ if (H5FD_write(file->onion_file, H5FD_MEM_DRAW, 0, size, buf) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_WRITEERROR, FAIL, "can't write updated history header")
+
+ /* Prepare revision index and finalize write-mode open */
+
+ if (NULL == (file->rev_index = H5FD__onion_revision_index_init(file->fa.page_size)))
+ HGOTO_ERROR(H5E_VFL, H5E_CANTINIT, FAIL, "can't initialize revision index")
+ file->curr_rev_record.parent_revision_num = file->curr_rev_record.revision_num;
+ if (!new_open)
+ file->curr_rev_record.revision_num += 1;
+ file->is_open_rw = TRUE;
+
+done:
+ if (FAIL == ret_value) {
+ if (file->recovery_file != NULL) {
+ if (H5FD_close(file->recovery_file) < 0)
+ HDONE_ERROR(H5E_VFL, H5E_CANTCLOSEFILE, FAIL, "can't close recovery file")
+ file->recovery_file = NULL;
+ }
+
+ if (file->rev_index != NULL) {
+ if (H5FD__onion_revision_index_destroy(file->rev_index) < 0)
+ HDONE_ERROR(H5E_VFL, H5E_CANTRELEASE, FAIL, "can't destroy revision index")
+ file->rev_index = NULL;
+ }
+ }
+
+ H5MM_xfree(buf);
+
+ FUNC_LEAVE_NOAPI(ret_value);
+} /* end H5FD__onion_open_rw() */
+
+/*-----------------------------------------------------------------------------
+ * Function: H5FD__onion_read
+ *
+ * Purpose: Read bytes from an onionized file
+ *
+ * Return: SUCCEED/FAIL
+ *-----------------------------------------------------------------------------
+ */
+static herr_t
+H5FD__onion_read(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, haddr_t offset, size_t len,
+ void *_buf_out)
+{
+ H5FD_onion_t *file = (H5FD_onion_t *)_file;
+ uint64_t page_0 = 0;
+ size_t n_pages = 0;
+ uint32_t page_size = 0;
+ uint32_t page_size_log2 = 0;
+ size_t bytes_to_read = len;
+ unsigned char *buf_out = (unsigned char *)_buf_out;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE
+
+ HDassert(file != NULL);
+ HDassert(buf_out != NULL);
+
+ if ((uint64_t)(offset + len) > file->logical_eoa)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Read extends beyond addressed space")
+
+ if (0 == len)
+ goto done;
+
+ page_size = file->header.page_size;
+ page_size_log2 = file->curr_rev_record.archival_index.page_size_log2;
+ page_0 = offset >> page_size_log2;
+ n_pages = (len + page_size - 1) >> page_size_log2;
+
+ /* Read, page-by-page */
+ for (size_t i = 0; i < n_pages; i++) {
+ const H5FD_onion_index_entry_t *entry_out = NULL;
+ haddr_t page_gap_head = 0; /* start of page to start of buffer */
+ haddr_t page_gap_tail = 0; /* end of buffer to end of page */
+ size_t page_readsize = 0;
+ uint64_t page_i = page_0 + i;
+
+ if (0 == i) {
+ page_gap_head = offset & (((uint32_t)1 << page_size_log2) - 1);
+ /* Check if we need to add an additional page to make up for the page_gap_head */
+ if (page_gap_head > 0 &&
+ (page_gap_head + (bytes_to_read % page_size) > page_size || bytes_to_read % page_size == 0)) {
+ n_pages++;
+ }
+ }
+
+ if (n_pages - 1 == i)
+ page_gap_tail = page_size - bytes_to_read - page_gap_head;
+
+ page_readsize = (size_t)page_size - page_gap_head - page_gap_tail;
+
+ if (TRUE == file->is_open_rw && file->fa.revision_num != 0 &&
+ H5FD__onion_revision_index_find(file->rev_index, page_i, &entry_out)) {
+ /* Page exists in 'live' revision index */
+ if (H5FD_read(file->onion_file, H5FD_MEM_DRAW, entry_out->phys_addr + page_gap_head,
+ page_readsize, buf_out) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_READERROR, FAIL, "can't get working file data")
+ }
+ else if (file->fa.revision_num != 0 &&
+ H5FD__onion_archival_index_find(&file->curr_rev_record.archival_index, page_i, &entry_out)) {
+ /* Page exists in archival index */
+ if (H5FD_read(file->onion_file, H5FD_MEM_DRAW, entry_out->phys_addr + page_gap_head,
+ page_readsize, buf_out) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_READERROR, FAIL, "can't get previously-amended file data")
+ }
+ else {
+ /* Page does not exist in either index */
+
+ /* Casts prevent truncation */
+ haddr_t addr_start = (haddr_t)page_i * (haddr_t)page_size + (haddr_t)page_gap_head;
+ haddr_t overlap_size = (addr_start > file->origin_eof) ? 0 : file->origin_eof - addr_start;
+ haddr_t read_size = MIN(overlap_size, page_readsize);
+
+ /* Get all original bytes in page range */
+ if ((read_size > 0) && H5FD_read(file->original_file, type, addr_start, read_size, buf_out) < 0) {
+ HGOTO_ERROR(H5E_VFL, H5E_READERROR, FAIL, "can't get original file data")
+ }
+
+ /* Fill with 0s any gaps after end of original bytes
+ * and before end of page.
+ */
+ for (size_t j = read_size; j < page_readsize; j++)
+ buf_out[j] = 0;
+ }
+
+ buf_out += page_readsize;
+ bytes_to_read -= page_readsize;
+ } /* end for each page in range */
+
+ HDassert(0 == bytes_to_read);
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value);
+} /* end H5FD__onion_read() */
+
+/*-----------------------------------------------------------------------------
+ * Function: H5FD__onion_set_eoa
+ *
+ * Purpose: Set end-of-address marker of the logical file.
+ *
+ * Return: SUCCEED/FAIL
+ *-----------------------------------------------------------------------------
+ */
+static herr_t
+H5FD__onion_set_eoa(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, haddr_t addr)
+{
+ H5FD_onion_t *file = (H5FD_onion_t *)_file;
+
+ FUNC_ENTER_PACKAGE_NOERR;
+
+ file->logical_eoa = addr;
+
+ FUNC_LEAVE_NOAPI(SUCCEED);
+} /* end H5FD__onion_set_eoa() */
+
+/*-----------------------------------------------------------------------------
+ * Function: H5FD__onion_write
+ *
+ * Purpose: Write bytes to an onionized file
+ *
+ * Return: SUCCEED/FAIL
+ *-----------------------------------------------------------------------------
+ */
+static herr_t
+H5FD__onion_write(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, haddr_t offset, size_t len,
+ const void *_buf)
+{
+ H5FD_onion_t *file = (H5FD_onion_t *)_file;
+ uint64_t page_0 = 0;
+ size_t n_pages = 0;
+ unsigned char *page_buf = NULL;
+ uint32_t page_size = 0;
+ uint32_t page_size_log2 = 0;
+ size_t bytes_to_write = len;
+ const unsigned char *buf = (const unsigned char *)_buf;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE
+
+ HDassert(file != NULL);
+ HDassert(buf != NULL);
+ HDassert(file->rev_index != NULL);
+ HDassert((uint64_t)(offset + len) <= file->logical_eoa);
+
+ if (FALSE == file->is_open_rw)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Write not allowed if file not opened in write mode")
+
+ if (0 == len)
+ goto done;
+
+ page_size = file->header.page_size;
+ page_size_log2 = file->curr_rev_record.archival_index.page_size_log2;
+ page_0 = offset >> page_size_log2;
+ n_pages = (len + page_size - 1) >> page_size_log2;
+
+ if (NULL == (page_buf = H5MM_calloc(page_size * sizeof(unsigned char))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "cannot allocate temporary buffer")
+
+ /* Write, page-by-page */
+ for (size_t i = 0; i < n_pages; i++) {
+ const unsigned char *write_buf = buf;
+ H5FD_onion_index_entry_t new_entry;
+ const H5FD_onion_index_entry_t *entry_out = NULL;
+ haddr_t page_gap_head = 0; /* start of page to start of buffer */
+ haddr_t page_gap_tail = 0; /* end of buffer to end of page */
+ size_t page_n_used = 0; /* nbytes from buffer for this page-write */
+ uint64_t page_i = page_0 + i;
+
+ if (0 == i) {
+ page_gap_head = offset & (((uint32_t)1 << page_size_log2) - 1);
+ /* If we have a page_gap_head and the number of bytes to write is
+ * evenly divisible by the page size we need to add an additional
+ * page to make up for the page_gap_head
+ */
+ if (page_gap_head > 0 && (page_gap_head + (bytes_to_write % page_size) > page_size ||
+ bytes_to_write % page_size == 0)) {
+ n_pages++;
+ }
+ }
+ if (n_pages - 1 == i)
+ page_gap_tail = page_size - bytes_to_write - page_gap_head;
+ page_n_used = page_size - page_gap_head - page_gap_tail;
+
+ /* Modify page in revision index, if present */
+ if (H5FD__onion_revision_index_find(file->rev_index, page_i, &entry_out)) {
+ if (page_gap_head | page_gap_tail) {
+ /* Copy existing page verbatim. */
+ if (H5FD_read(file->onion_file, H5FD_MEM_DRAW, entry_out->phys_addr, page_size, page_buf) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_READERROR, FAIL, "can't get working file data")
+ /* Overlay delta from input buffer onto page buffer. */
+ HDmemcpy(page_buf + page_gap_head, buf, page_n_used);
+ write_buf = page_buf;
+ } /* end if partial page */
+
+ if (H5FD_write(file->onion_file, H5FD_MEM_DRAW, entry_out->phys_addr, page_size, write_buf) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_WRITEERROR, FAIL, "write amended page data to backing file")
+
+ buf += page_n_used; /* overflow never touched */
+ bytes_to_write -= page_n_used;
+
+ continue;
+ } /* end if page exists in 'live' revision index */
+
+ if (page_gap_head || page_gap_tail) {
+ /* Fill gaps with existing data or zeroes. */
+ if (H5FD__onion_archival_index_find(&file->curr_rev_record.archival_index, page_i, &entry_out)) {
+ /* Page exists in archival index */
+
+ /* Copy existing page verbatim */
+ if (H5FD_read(file->onion_file, H5FD_MEM_DRAW, entry_out->phys_addr, page_size, page_buf) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_READERROR, FAIL, "can't get previously-amended data")
+ }
+ else {
+ haddr_t addr_start = (haddr_t)(page_i * page_size);
+ haddr_t overlap_size = (addr_start > file->origin_eof) ? 0 : file->origin_eof - addr_start;
+ haddr_t read_size = MIN(overlap_size, page_size);
+
+ /* Get all original bytes in page range */
+ if ((read_size > 0) &&
+ H5FD_read(file->original_file, type, addr_start, read_size, page_buf) < 0) {
+ HGOTO_ERROR(H5E_VFL, H5E_READERROR, FAIL, "can't get original file data")
+ }
+
+ /* Fill with 0s any gaps after end of original bytes
+ * or start of page and before start of new data.
+ */
+ for (size_t j = read_size; j < page_gap_head; j++)
+ page_buf[j] = 0;
+
+ /* Fill with 0s any gaps after end of original bytes
+ * or end of new data and before end of page.
+ */
+ for (size_t j = MAX(read_size, page_size - page_gap_tail); j < page_size; j++)
+ page_buf[j] = 0;
+ } /* end if page exists in neither index */
+
+ /* Copy input buffer to temporary page buffer */
+ HDassert((page_size - page_gap_head) >= page_n_used);
+ HDmemcpy(page_buf + page_gap_head, buf, page_n_used);
+ write_buf = page_buf;
+
+ } /* end if data range does not span entire page */
+
+ new_entry.logical_page = page_i;
+ new_entry.phys_addr = file->onion_eof;
+
+ if (H5FD_set_eoa(file->onion_file, H5FD_MEM_DRAW, file->onion_eof + page_size) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTSET, FAIL, "can't modify EOA for new page amendment")
+
+ if (H5FD_write(file->onion_file, H5FD_MEM_DRAW, file->onion_eof, page_size, write_buf) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_WRITEERROR, FAIL, "write amended page data to backing file")
+
+ if (H5FD__onion_revision_index_insert(file->rev_index, &new_entry) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTINSERT, FAIL, "can't insert new index entry into revision index")
+
+ file->onion_eof += page_size;
+ buf += page_n_used; /* possible overflow never touched */
+ bytes_to_write -= page_n_used;
+
+ } /* end for each page to write */
+
+ HDassert(0 == bytes_to_write);
+
+ file->logical_eof = MAX(file->logical_eof, (offset + len));
+
+done:
+ H5MM_xfree(page_buf);
+
+ FUNC_LEAVE_NOAPI(ret_value);
+} /* end H5FD__onion_write() */
+
+/*-------------------------------------------------------------------------
+ * Function: H5FD__onion_ctl
+ *
+ * Purpose: Onion VFD version of the ctl callback.
+ *
+ * The desired operation is specified by the op_code
+ * parameter.
+ *
+ * The flags parameter controls management of op_codes that
+ * are unknown to the callback
+ *
+ * The input and output parameters allow op_code specific
+ * input and output
+ *
+ * Return: SUCCEED/FAIL
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FD__onion_ctl(H5FD_t *_file, uint64_t op_code, uint64_t flags, const void H5_ATTR_UNUSED *input,
+ void **output)
+{
+ H5FD_onion_t *file = (H5FD_onion_t *)_file;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE
+
+ /* Sanity checks */
+ HDassert(file);
+
+ switch (op_code) {
+ case H5FD_CTL_GET_NUM_REVISIONS:
+ if (!output || !*output)
+ HGOTO_ERROR(H5E_VFL, H5E_FCNTL, FAIL, "the output parameter is null")
+
+ **((uint64_t **)output) = file->history.n_revisions;
+ break;
+ /* Unknown op code */
+ default:
+ if (flags & H5FD_CTL_FAIL_IF_UNKNOWN_FLAG)
+ HGOTO_ERROR(H5E_VFL, H5E_FCNTL, FAIL, "unknown op_code and fail if unknown flag is set")
+ break;
+ }
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5FD__onion_ctl() */
+
+/*-------------------------------------------------------------------------
+ * Function: H5FDget_onion_revision_count
+ *
+ * Purpose: Get the number of revisions in an onion file
+ *
+ * Return: SUCCEED/FAIL
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5FDonion_get_revision_count(const char *filename, hid_t fapl_id, uint64_t *revision_count /*out*/)
+{
+ H5P_genplist_t *plist = NULL;
+ H5FD_t *file = NULL;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE3("e", "*six", filename, fapl_id, revision_count);
+
+ /* Check args */
+ if (!filename || !HDstrcmp(filename, ""))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid file name")
+ if (!revision_count)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "revision count can't be null")
+
+ /* Make sure using the correct driver */
+ if (NULL == (plist = H5P_object_verify(fapl_id, H5P_FILE_ACCESS)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid FAPL ID")
+ if (H5FD_ONION != H5P_peek_driver(plist))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a Onion VFL driver")
+
+ /* Open the file with the driver */
+ if (NULL == (file = H5FD_open(filename, H5F_ACC_RDONLY, fapl_id, HADDR_UNDEF)))
+ HGOTO_ERROR(H5E_VFL, H5E_CANTOPENFILE, FAIL, "unable to open file with onion driver")
+
+ /* Call the private function */
+ if (H5FD__get_onion_revision_count(file, revision_count) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTGET, FAIL, "failed to get the number of revisions")
+
+done:
+ /* Close H5FD_t structure pointer */
+ if (file && H5FD_close(file) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_CANTCLOSEFILE, FAIL, "unable to close file")
+
+ FUNC_LEAVE_API(ret_value)
+}
+
+/*-------------------------------------------------------------------------
+ * Function: H5FD__get_onion_revision_count
+ *
+ * Purpose: Private version of H5FDget_onion_revision_count()
+ *
+ * Return: SUCCEED/FAIL
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FD__get_onion_revision_count(H5FD_t *file, uint64_t *revision_count)
+{
+ uint64_t op_code;
+ uint64_t flags;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE
+
+ HDassert(file);
+ HDassert(revision_count);
+
+ op_code = H5FD_CTL_GET_NUM_REVISIONS;
+ flags = H5FD_CTL_FAIL_IF_UNKNOWN_FLAG;
+
+ /* Get the number of revisions via the ctl callback */
+ if (H5FD_ctl(file, op_code, flags, NULL, (void **)&revision_count) < 0)
+ HGOTO_ERROR(H5E_VFL, H5E_FCNTL, FAIL, "VFD ctl request failed")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+}
+
+/*-----------------------------------------------------------------------------
+ * Function: H5FD__onion_write_final_history
+ *
+ * Purpose: Write final history to appropriate backing file on file close
+ *
+ * Return: SUCCEED/FAIL
+ *-----------------------------------------------------------------------------
+ */
+herr_t
+H5FD__onion_write_final_history(H5FD_onion_t *file)
+{
+ size_t size = 0;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE;
+
+ /* TODO: history EOF may not be correct (under what circumstances?) */
+ if (0 == (size = H5FD__onion_write_history(&(file->history), file->onion_file, file->onion_eof,
+ file->onion_eof)))
+ HGOTO_ERROR(H5E_VFL, H5E_WRITEERROR, FAIL, "can't write final history")
+
+ if (size != file->header.history_size)
+ HGOTO_ERROR(H5E_VFL, H5E_WRITEERROR, FAIL, "written history differed from expected size")
+
+ /* Is last write operation to history file; no need to extend to page
+ * boundary if set to page-align.
+ */
+ file->onion_eof += size;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value);
+} /* end H5FD__onion_write_final_history() */