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authorQuincey Koziol <koziol@hdfgroup.org>2006-05-15 04:35:53 (GMT)
committerQuincey Koziol <koziol@hdfgroup.org>2006-05-15 04:35:53 (GMT)
commit7b6db1046b044d2f433a02b2c64f9297988e8b50 (patch)
tree3fd3b9fc87d5f4534c66b4d0598a48704d0b727b /src/H5FS.c
parent84b03a51c7104f2b691c7067d0d82b28880b9086 (diff)
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[svn-r12349] Purpose:
Code checkpoint Description: Checkpoint fractal heap improvements, as well as move the free space manager code that it's using into a separate package. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4/64 (mir) w/C++ & FORTRAN Linux 2.4/32 (heping) Solaris 2.9 (shanti) AIX 5.? (copper) w/FORTRAN & parallel
Diffstat (limited to 'src/H5FS.c')
-rw-r--r--src/H5FS.c1887
1 files changed, 1887 insertions, 0 deletions
diff --git a/src/H5FS.c b/src/H5FS.c
new file mode 100644
index 0000000..7ed766f
--- /dev/null
+++ b/src/H5FS.c
@@ -0,0 +1,1887 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Tuesday, May 2, 2006
+ *
+ * Purpose: File free space functions.
+ *
+ * Note: (Used to be in the H5HFflist.c file, prior to the date above)
+ *
+ */
+
+/****************/
+/* Module Setup */
+/****************/
+
+#define H5FS_PACKAGE /*suppress error about including H5FSpkg */
+
+/* Interface initialization */
+#define H5_INTERFACE_INIT_FUNC H5FS_init_interface
+
+/***********/
+/* Headers */
+/***********/
+#include "H5private.h" /* Generic Functions */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5FSpkg.h" /* File free space */
+#include "H5MFprivate.h" /* File memory management */
+#include "H5Vprivate.h" /* Vectors and arrays */
+
+/****************/
+/* Local Macros */
+/****************/
+
+/* File free space format version #'s */
+#define H5FS_SECTS_VERSION 0 /* Serialized sections */
+
+/* Default starting size of section buffer */
+#define H5FS_SECT_SIZE_DEFAULT 64
+
+/* Max. height of the skip list holding free list nodes */
+#define H5FS_DEFAULT_SKIPLIST_HEIGHT 16
+
+/* Size of the free space serialized sections on disk */
+#define H5FS_SECTS_PREFIX_SIZE(f) ( \
+ /* General metadata fields */ \
+ H5FS_METADATA_PREFIX_SIZE \
+ \
+ /* Free space serialized sections specific fields */ \
+ + H5F_SIZEOF_ADDR(f) /* Address of free space header for these sections */ \
+ )
+
+/******************/
+/* Local Typedefs */
+/******************/
+
+/* Free space node for free space sections of the same size */
+typedef struct H5FS_node_t {
+ hsize_t sect_size; /* Size of all sections on list */
+ H5SL_t *sect_list; /* Skip list to hold pointers to actual free list section node */
+} H5FS_node_t;
+
+/* Free space section bin info */
+typedef struct H5FS_bin_t {
+ size_t sect_count; /* Total # of sections in this bin */
+ H5SL_t *bin_list; /* Skip list of differently sized sections */
+} H5FS_bin_t;
+
+/* User data for skip list iterator callback for syncing section info */
+typedef struct {
+ H5F_t *f; /* Pointer to the file */
+ hid_t dxpl_id; /* Dataset transfer property list */
+} H5FS_iter_ud1_t;
+
+/* User data for skip list iterator callback for iterating over section size nodes when syncing */
+typedef struct {
+ H5FS_t *fspace; /* Free space manager info */
+ uint8_t **p; /* Pointer to address of buffer pointer to serialize with */
+ unsigned sect_cnt_size; /* # of bytes to encode section size counts in */
+} H5FS_iter_ud2_t;
+
+/* User data for skip list iterator callback for iterating over section size nodes */
+typedef struct {
+ H5FS_t *fspace; /* Free space manager info */
+ H5FS_operator_t op; /* Operator for the iteration */
+ void *op_data; /* Information to pass to the operator */
+} H5FS_iter_ud3_t;
+
+
+/********************/
+/* Package Typedefs */
+/********************/
+
+/* Main free space info */
+struct H5FS_t {
+ /* Stored values (from header) */
+ H5FS_hdr_t *hdr; /* Pointer to header info */
+
+ /* Computed/cached values */
+ haddr_t addr; /* Address of free space header on disk */
+ unsigned nbins; /* Number of bins */
+ size_t serial_size; /* Total serialized size of all section nodes */
+ size_t size_count; /* Number of differently sized sections */
+ unsigned sect_prefix_size; /* Size of the section serialization prefix (in bytes) */
+ unsigned sect_off_size; /* Size of a section offset (in bytes) */
+ unsigned sect_len_size; /* Size of a section length (in bytes) */
+ hbool_t using_bins; /* Flag to indicate that all nodes are in the bins */
+ hbool_t dirty; /* Space information is dirty */
+
+ /* Memory data structures (not stored directly) */
+ H5FS_section_class_t *sect_cls; /* Array of section classes for this free list */
+ H5FS_section_info_t *single; /* Section information when free list has only one free section */
+ H5SL_operator_t node_free_op; /* Callback for freeing nodes when free list is destroyed */
+ H5FS_bin_t *bins; /* Array of lists of lists of free sections */
+};
+
+
+/********************/
+/* Local Prototypes */
+/********************/
+static herr_t H5FS_open_add(H5FS_t *fspace);
+static herr_t H5FS_open_remove(H5FS_t *fspace);
+static herr_t H5FS_init(H5FS_t *fspace);
+static herr_t H5FS_node_free_cb(void *item, void *key, void *op_data);
+static herr_t H5FS_sect_increase(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace);
+static herr_t H5FS_sect_decrease(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace);
+static herr_t H5FS_add_bin_node(H5FS_t *fspace, H5FS_section_info_t *node);
+static htri_t H5FS_find_bin_node(H5FS_t *fspace, hsize_t request, H5FS_section_info_t **node);
+static herr_t H5FS_serialize_sect_cb(void *_item, void UNUSED *key, void *_udata);
+static herr_t H5FS_serialize_node_cb(void *_item, void UNUSED *key, void *_udata);
+static size_t H5FS_serialize_size(H5FS_t *fspace);
+static herr_t H5FS_serialize_bins(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace);
+static herr_t H5FS_deserialize_bins(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace);
+static herr_t H5FS_flush_cb(void *_item, void *key, void *_udata);
+
+
+/*********************/
+/* Package Variables */
+/*********************/
+
+/* Declare a free list to manage the H5FS_section_class_t sequence information */
+H5FL_SEQ_DEFINE(H5FS_section_class_t);
+
+/* Declare a free list to manage the H5FS_hdr_t struct */
+H5FL_DEFINE(H5FS_hdr_t);
+
+
+/*****************************/
+/* Library Private Variables */
+/*****************************/
+
+
+/*******************/
+/* Local Variables */
+/*******************/
+
+/* Skip list to track open free space managers */
+H5SL_t *H5FS_open_g = NULL;
+
+/* Declare a free list to manage the H5FS_t struct */
+H5FL_DEFINE_STATIC(H5FS_t);
+
+/* Declare a free list to manage the H5FS_node_t struct */
+H5FL_DEFINE_STATIC(H5FS_node_t);
+
+/* Declare a free list to manage the H5FS_bin_t sequence information */
+H5FL_SEQ_DEFINE_STATIC(H5FS_bin_t);
+
+/* Declare a free list to manage free space section data to/from disk */
+H5FL_BLK_DEFINE_STATIC(sect_block);
+
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_init_interface
+ *
+ * Purpose: Initialize static free space memory structures
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_init_interface(void)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_init_interface)
+
+ /* Create the skip list to track open free space managers */
+ HDassert(H5FS_open_g == NULL);
+ if(NULL == (H5FS_open_g = H5SL_create(H5SL_TYPE_HADDR, 0.5, H5FS_DEFAULT_SKIPLIST_HEIGHT)))
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTCREATE, FAIL, "can't create skip list for tracking open free space managers")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_init_interface() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_term_interface
+ *
+ * Purpose: Terminate this interface.
+ *
+ * Return: Success: Positive if anything was done that might
+ * affect other interfaces; zero otherwise.
+ *
+ * Failure: Negative.
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+int
+H5FS_term_interface(void)
+{
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5FS_term_interface)
+
+ if(H5_interface_initialize_g) {
+ /* Release the open free space manager list */
+ HDassert(H5FS_open_g);
+
+ /* All the free space managers should be shut down by now */
+ HDassert(H5SL_count(H5FS_open_g) == 0);
+
+ /* Close the skip list to track the open free space managers */
+ H5SL_close(H5FS_open_g);
+ H5FS_open_g = NULL;
+
+ /* Interface has been shut down */
+ H5_interface_initialize_g = 0;
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(0)
+} /* end H5FS_term_interface() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_open_add
+ *
+ * Purpose: Add a free space manager to the list of open ones
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_open_add(H5FS_t *fspace)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_open_add)
+
+ /* Check arguments. */
+ HDassert(fspace);
+
+ /* Add the free space manager to the list of open managers */
+ if(H5SL_insert(H5FS_open_g, fspace, &fspace->addr) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTINSERT, FAIL, "can't insert free space manager into skip list")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_open_add() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_open_remove
+ *
+ * Purpose: Remove a free space manager from the list of open ones
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_open_remove(H5FS_t *fspace)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_open_remove)
+
+ /* Check arguments. */
+ HDassert(fspace);
+
+ /* Remove the free space manager from the list of open managers */
+ if(NULL == H5SL_remove(H5FS_open_g, &fspace->addr))
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTDELETE, FAIL, "can't remove free space manager from skip list")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_open_remove() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_init
+ *
+ * Purpose: Initialize free space memory structures
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Tuesday, April 18, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_init(H5FS_t *fspace)
+{
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5FS_init)
+
+ /* Check arguments. */
+ HDassert(fspace);
+
+ /* Initialize free space memory structures */
+ fspace->single = NULL;
+ fspace->bins = NULL;
+ fspace->using_bins = FALSE;
+ fspace->serial_size = 0;
+ fspace->size_count = 0;
+
+ FUNC_LEAVE_NOAPI(SUCCEED)
+} /* H5FS_init() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_create
+ *
+ * Purpose: Allocate & initialize file free space info
+ *
+ * Return: Success: Pointer to free space structure
+ *
+ * Failure: NULL
+ *
+ * Programmer: Quincey Koziol
+ * Tuesday, March 7, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+H5FS_t *
+H5FS_create(H5F_t *f, hid_t dxpl_id, haddr_t *fs_addr, const H5FS_create_t *fs_create,
+ H5SL_operator_t node_free_op, size_t nclasses,
+ H5FS_section_class_t *classes, const void *cls_init_udata)
+{
+ H5FS_t *fspace = NULL; /* New free space structure */
+ H5FS_hdr_t *fs_hdr = NULL; /* New free space header */
+ size_t u; /* Local index variable */
+ H5FS_t *ret_value; /* Return value */
+
+ FUNC_ENTER_NOAPI(H5FS_create, NULL)
+
+ /* Check arguments. */
+ HDassert(fs_addr);
+ HDassert(fs_create->shrink_percent);
+ HDassert(fs_create->shrink_percent < fs_create->expand_percent);
+ HDassert(fs_create->max_sect_size);
+ HDassert(nclasses == 0 || classes);
+
+ /*
+ * Allocate free space structure
+ */
+ if(NULL == (fspace = H5FL_CALLOC(H5FS_t)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for free space free list")
+
+ /* Set immutable free list parameters */
+ fspace->node_free_op = node_free_op;
+ fspace->sect_cls = classes;
+
+ /* Initialize the section classes for this free space list */
+ for(u = 0; u < nclasses; u++) {
+ /* Call the class initialization routine, if there is one */
+ if(fspace->sect_cls[u].init)
+ if((fspace->sect_cls[u].init)(&fspace->sect_cls[u], cls_init_udata) < 0)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, NULL, "unable to initialize section class")
+ } /* end for */
+
+ /* Allocate space for the free space header */
+ if(HADDR_UNDEF == (fspace->addr = H5MF_alloc(f, H5FD_MEM_FSPACE_HDR, dxpl_id, (hsize_t)H5FS_HEADER_SIZE(f))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "file allocation failed for free space header")
+ *fs_addr = fspace->addr;
+
+ /* Construct the free space header */
+ if(NULL == (fs_hdr = H5FL_MALLOC(H5FS_hdr_t)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
+ HDmemset(&fs_hdr->cache_info, 0, sizeof(H5AC_info_t));
+
+ /* Initialize information for header */
+ fs_hdr->tot_space = 0;
+ fs_hdr->sect_count = 0;
+ fs_hdr->nclasses = nclasses;
+ fs_hdr->client = fs_create->client;
+ fs_hdr->shrink_percent = fs_create->shrink_percent;
+ fs_hdr->expand_percent = fs_create->expand_percent;
+ fs_hdr->max_sect_addr = fs_create->max_sect_addr;
+ fs_hdr->max_sect_size = fs_create->max_sect_size;
+
+ /* Allocate space for the free space sections */
+ fs_hdr->alloc_sect_size = H5FS_SECT_SIZE_DEFAULT;
+#ifdef QAK
+HDfprintf(stderr, "%s: fs_hdr->alloc_sect_size = %Hu\n", FUNC, fs_hdr->alloc_sect_size);
+#endif /* QAK */
+ if(HADDR_UNDEF == (fs_hdr->sect_addr = H5MF_alloc(f, H5FD_MEM_FSPACE_SECTS, dxpl_id, fs_hdr->alloc_sect_size)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "file allocation failed for free space sections")
+
+ /* Cache the new free space header */
+ if(H5AC_set(f, dxpl_id, H5AC_FSPACE_HDR, fspace->addr, fs_hdr, H5AC__NO_FLAGS_SET) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTINIT, NULL, "can't add free space header to cache")
+ fs_hdr = NULL;
+
+ /* Lock the free space header into memory */
+ if(NULL == (fs_hdr = H5AC_protect(f, dxpl_id, H5AC_FSPACE_HDR, fspace->addr, NULL, NULL, H5AC_WRITE)))
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTPROTECT, NULL, "unable to load free space header")
+
+ /* Point free space wrapper at header and pin it in the cache */
+ fspace->hdr = fs_hdr;
+ if(H5AC_pin_protected_entry(f, fs_hdr) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTPIN, NULL, "unable to pin free space header")
+
+ /* Unlock free space header, now pinned */
+ if(H5AC_unprotect(f, dxpl_id, H5AC_FSPACE_HDR, fspace->addr, fs_hdr, H5AC__NO_FLAGS_SET) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTUNPROTECT, NULL, "unable to release free space header")
+ fs_hdr = NULL;
+
+ /* Set modifiable free space parameters */
+ fspace->nbins = H5V_log2_gen(fspace->hdr->max_sect_size);
+ fspace->sect_prefix_size = H5FS_SECTS_PREFIX_SIZE(f);
+ fspace->sect_off_size = (fspace->hdr->max_sect_addr + 7) / 8;
+ fspace->sect_len_size = (H5V_log2_gen(fspace->hdr->max_sect_size) + 7) / 8;
+ H5FS_init(fspace);
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->nbins = %u\n", FUNC, fspace->nbins);
+HDfprintf(stderr, "%s: fspace->sect_off_size = %u, fspace->sect_len_size = %u\n", FUNC, fspace->sect_off_size, fspace->sect_len_size);
+#endif /* QAK */
+
+ /* Set current space used for free space sections (for no sections) */
+ fspace->hdr->sect_size = H5FS_serialize_size(fspace);
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->hdr->sect_size = %Hu\n", FUNC, fspace->hdr->sect_size);
+#endif /* QAK */
+
+ /* Flag the free space as dirty */
+ fspace->dirty = TRUE;
+
+ /* Add the free space manager to the list of open free space managers */
+ if(H5FS_open_add(fspace) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTINIT, NULL, "can't add free space header to open list")
+
+ /* Set return value */
+ ret_value = fspace;
+
+done:
+ if(!ret_value) {
+ if(fspace)
+ if(H5FS_close(f, dxpl_id, fspace) < 0)
+ HDONE_ERROR(H5E_RESOURCE, H5E_CANTINIT, NULL, "unable to release free space info")
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_create() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_open
+ *
+ * Purpose: Open an existing file free space info structure on disk
+ *
+ * Return: Success: Pointer to free space structure
+ *
+ * Failure: NULL
+ *
+ * Programmer: Quincey Koziol
+ * Tuesday, May 2, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+H5FS_t *
+H5FS_open(H5F_t *f, hid_t dxpl_id, haddr_t fs_addr, H5SL_operator_t node_free_op,
+ size_t nclasses, H5FS_section_class_t *classes, const void *cls_init_udata)
+{
+ H5FS_hdr_t *fs_hdr = NULL; /* Free space header loaded from file */
+ H5FS_t *fspace = NULL; /* New free space structure */
+ size_t u; /* Local index variable */
+ H5FS_t *ret_value; /* Return value */
+
+ FUNC_ENTER_NOAPI(H5FS_open, NULL)
+#ifdef QAK
+HDfprintf(stderr, "%s: Opening free space manager\n", FUNC);
+#endif /* QAK */
+
+ /* Check arguments. */
+ HDassert(H5F_addr_defined(fs_addr));
+ HDassert(nclasses == 0 || classes);
+
+ /* Allocate free space structure */
+ if(NULL == (fspace = H5FL_MALLOC(H5FS_t)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for free space free list")
+
+ /* Protect the free space header */
+ if(NULL == (fs_hdr = H5AC_protect(f, dxpl_id, H5AC_FSPACE_HDR, fs_addr, NULL, NULL, H5AC_READ)))
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTPROTECT, NULL, "unable to protect free space header")
+
+ /* Point free space wrapper at header and pin it in the cache */
+ fspace->hdr = fs_hdr;
+ if(H5AC_pin_protected_entry(f, fs_hdr) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTPIN, NULL, "unable to pin free space header")
+
+ /* Release the free space header */
+ if(H5AC_unprotect(f, dxpl_id, H5AC_FSPACE_HDR, fs_addr, fs_hdr, H5AC__NO_FLAGS_SET) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTUNPROTECT, NULL, "unable to release free space header")
+ fs_hdr = NULL;
+
+ /* Set immutable free list parameters */
+ fspace->addr = fs_addr;
+ fspace->node_free_op = node_free_op;
+ HDassert(fspace->hdr->nclasses == nclasses);
+ fspace->sect_cls = classes;
+
+ /* Initialize the section classes for this free space list */
+ for(u = 0; u < nclasses; u++) {
+ /* Call the class initialization routine, if there is one */
+ if(fspace->sect_cls[u].init)
+ if((fspace->sect_cls[u].init)(&fspace->sect_cls[u], cls_init_udata) < 0)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, NULL, "unable to initialize section class")
+ } /* end for */
+
+ /* Set modifiable free space parameters */
+ fspace->nbins = H5V_log2_gen(fspace->hdr->max_sect_size);
+ fspace->sect_prefix_size = H5FS_SECTS_PREFIX_SIZE(f);
+ fspace->sect_off_size = (fspace->hdr->max_sect_addr + 7) / 8;
+ fspace->sect_len_size = (H5V_log2_gen(fspace->hdr->max_sect_size) + 7) / 8;
+ H5FS_init(fspace);
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->nbins = %u\n", FUNC, fspace->nbins);
+HDfprintf(stderr, "%s: fspace->sect_off_size = %u, fspace->sect_len_size = %u\n", FUNC, fspace->sect_off_size, fspace->sect_len_size);
+#endif /* QAK */
+
+ /* The free space is clean, currently */
+ fspace->dirty = FALSE;
+
+ /* Go get all the sections */
+ if(H5FS_deserialize_bins(f, dxpl_id, fspace) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTDECODE, NULL, "can't deserialize sections")
+
+ /* Add the free space manager to the list of open free space managers */
+ if(H5FS_open_add(fspace) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTINIT, NULL, "can't add free space manager to open list")
+
+ /* Set return value */
+ ret_value = fspace;
+
+done:
+ if(!ret_value) {
+ if(fspace)
+ if(H5FS_close(f, dxpl_id, fspace) < 0)
+ HDONE_ERROR(H5E_RESOURCE, H5E_CANTINIT, NULL, "unable to release free space info")
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_open() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_sect_increase
+ *
+ * Purpose: Increase the size of the serialized free space section info
+ * on disk
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_sect_increase(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace)
+{
+ hsize_t new_size; /* New size of space for serialized sections */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_sect_increase)
+
+ /* Check arguments. */
+ HDassert(f);
+ HDassert(fspace);
+ HDassert(fspace->hdr);
+
+ /* Increment # of sections on free space list */
+ fspace->hdr->sect_count++;
+
+ /* Update the free space sections' serialized size */
+ fspace->hdr->sect_size = H5FS_serialize_size(fspace);
+
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->hdr->sect_size = %Hu\n", FUNC, fspace->hdr->sect_size);
+HDfprintf(stderr, "%s: fspace->hdr->alloc_sect_size = %Hu\n", FUNC, fspace->hdr->alloc_sect_size);
+#endif /* QAK */
+ if(fspace->hdr->sect_size > fspace->hdr->alloc_sect_size) {
+/* Currently, the old block data is "thrown away" after the space is reallocated,
+* so avoid data copy in H5MF_realloc() call by just free'ing the space and
+* allocating new space.
+*
+* This also keeps the file smaller, by freeing the space and then
+* allocating new space, instead of vice versa (in H5MF_realloc).
+*
+* QAK - 5/ 8/2006
+*/
+ /* Free previous indirect block disk space */
+ if(H5MF_xfree(f, H5FD_MEM_FSPACE_SECTS, dxpl_id, fspace->hdr->sect_addr, (hsize_t)fspace->hdr->alloc_sect_size)<0)
+ HGOTO_ERROR(H5E_STORAGE, H5E_CANTFREE, FAIL, "unable to free free space sections")
+
+ /* Compute new size */
+ new_size = fspace->hdr->alloc_sect_size;
+ while(new_size < fspace->hdr->sect_size)
+ new_size *= (double)fspace->hdr->expand_percent / 100.0;
+ fspace->hdr->alloc_sect_size = new_size;
+
+ /* Allocate space for the new indirect block on disk */
+ if(HADDR_UNDEF == (fspace->hdr->sect_addr = H5MF_alloc(f, H5FD_MEM_FSPACE_SECTS, dxpl_id, (hsize_t)fspace->hdr->alloc_sect_size)))
+ HGOTO_ERROR(H5E_STORAGE, H5E_NOSPACE, FAIL, "file allocation failed for free space sections")
+ } /* end if */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_sect_increase() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_sect_decrease
+ *
+ * Purpose: Decrease the size of the serialized free space section info
+ * on disk
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_sect_decrease(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace)
+{
+ hsize_t decrease_threshold; /* Size threshold for decreasing serialized section size */
+ hsize_t new_size; /* New size of space for serialized sections */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_sect_decrease)
+
+ /* Check arguments. */
+ HDassert(f);
+ HDassert(fspace);
+ HDassert(fspace->hdr);
+
+ /* Decrement # of sections on free space list */
+ fspace->hdr->sect_count--;
+
+/* XXX: Should check for only one section in bins & convert to single section */
+ /* Drop back to using a "single" node when the bins are empty. */
+ if(fspace->hdr->sect_count == 0)
+ fspace->using_bins = FALSE;
+
+ /* Update the free space sections' serialized size */
+ fspace->hdr->sect_size = H5FS_serialize_size(fspace);
+
+ /* Compute the threshold for decreasing the sections' serialized size */
+ decrease_threshold = (fspace->hdr->alloc_sect_size * (double)fspace->hdr->shrink_percent) / 100.0;
+
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->hdr->sect_size = %Hu\n", FUNC, fspace->hdr->sect_size);
+HDfprintf(stderr, "%s: fspace->hdr->alloc_sect_size = %Hu\n", FUNC, fspace->hdr->alloc_sect_size);
+#endif /* QAK */
+ if(fspace->hdr->alloc_sect_size > H5FS_SECT_SIZE_DEFAULT &&
+ fspace->hdr->sect_size < decrease_threshold) {
+/* Currently, the old block data is "thrown away" after the space is reallocated,
+* so avoid data copy in H5MF_realloc() call by just free'ing the space and
+* allocating new space.
+*
+* This also keeps the file smaller, by freeing the space and then
+* allocating new space, instead of vice versa (in H5MF_realloc).
+*
+* QAK - 5/ 8/2006
+*/
+ /* Free previous indirect block disk space */
+ if(H5MF_xfree(f, H5FD_MEM_FSPACE_SECTS, dxpl_id, fspace->hdr->sect_addr, (hsize_t)fspace->hdr->alloc_sect_size)<0)
+ HGOTO_ERROR(H5E_STORAGE, H5E_CANTFREE, FAIL, "unable to free free space sections")
+
+ /* Compute new size */
+ while(fspace->hdr->sect_size < decrease_threshold) {
+ new_size = decrease_threshold;
+
+ decrease_threshold *= (double)fspace->hdr->shrink_percent / 100.0;
+ } /* end while */
+ if(new_size < H5FS_SECT_SIZE_DEFAULT)
+ new_size = H5FS_SECT_SIZE_DEFAULT;
+ fspace->hdr->alloc_sect_size = new_size;
+
+ /* Allocate space for the new indirect block on disk */
+ if(HADDR_UNDEF == (fspace->hdr->sect_addr = H5MF_alloc(f, H5FD_MEM_FSPACE_SECTS, dxpl_id, (hsize_t)fspace->hdr->alloc_sect_size)))
+ HGOTO_ERROR(H5E_STORAGE, H5E_NOSPACE, FAIL, "file allocation failed for free space sections")
+ } /* end if */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_sect_decrease() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_add_bin_node
+ *
+ * Purpose: Add a section of free space in a direct block to the free list
+ * bins
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, March 20, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_add_bin_node(H5FS_t *fspace, H5FS_section_info_t *node)
+{
+ H5FS_node_t *fspace_node = NULL; /* Pointer to free space node of the correct size */
+ unsigned bin; /* Bin to put the free space section in */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_add_bin_node)
+#ifdef QAK
+HDfprintf(stderr, "%s: node->size = %Hu, node->addr = %a\n", FUNC, node->size, node->addr);
+#endif /* QAK */
+
+ /* Check arguments. */
+ HDassert(fspace);
+ HDassert(node);
+ HDassert(H5F_addr_defined(node->addr));
+ HDassert(node->size);
+
+ /* Determine correct bin which holds items of the section's size */
+ bin = H5V_log2_gen(node->size);
+ HDassert(bin < fspace->nbins);
+ if(fspace->bins[bin].bin_list == NULL) {
+ if(NULL == (fspace->bins[bin].bin_list = H5SL_create(H5SL_TYPE_HSIZE, 0.5, H5FS_DEFAULT_SKIPLIST_HEIGHT)))
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTCREATE, FAIL, "can't create skip list for free space nodes")
+ } /* end if */
+ else {
+ /* Check for node list of the correct size already */
+ fspace_node = H5SL_search(fspace->bins[bin].bin_list, &node->size);
+ } /* end else */
+
+ /* Check if we need to create a new skip list for nodes of this size */
+ if(fspace_node == NULL) {
+ /* Allocate new free list size node */
+ if(NULL == (fspace_node = H5FL_MALLOC(H5FS_node_t)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for free space node")
+
+ /* Initialize the free list size node */
+ fspace_node->sect_size = node->size;
+ if(NULL == (fspace_node->sect_list = H5SL_create(H5SL_TYPE_HADDR, 0.5, H5FS_DEFAULT_SKIPLIST_HEIGHT)))
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTCREATE, FAIL, "can't create skip list for free space nodes")
+
+ /* Insert new free space size node into bin's list */
+ if(H5SL_insert(fspace->bins[bin].bin_list, fspace_node, &fspace_node->sect_size) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTINSERT, FAIL, "can't insert free space node into skip list")
+
+ /* Increment number of section sizes */
+ fspace->size_count++;
+ } /* end if */
+
+ /* Increment # of section in bin */
+ /* (Different from the # of items in the bin's skiplist, since each node on
+ * the bin's skiplist is also a skiplist...)
+ */
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->bins[%u].sect_count = %Zu\n", FUNC, bin, fspace->bins[bin].sect_count);
+#endif /* QAK */
+ fspace->bins[bin].sect_count++;
+
+ /* Increment amount of space required to serialize all sections */
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->serial_size = %Zu\n", FUNC, fspace->serial_size);
+HDfprintf(stderr, "%s: fspace->sect_cls[node->cls->type].serial_size = %Zu\n", FUNC, fspace->sect_cls[node->cls->type].serial_size);
+#endif /* QAK */
+ fspace->serial_size += fspace->sect_cls[node->cls->type].serial_size;
+
+ /* Insert free space node into correct skip list */
+ if(H5SL_insert(fspace_node->sect_list, node, &node->addr) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTINSERT, FAIL, "can't insert free space node into skip list")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_add_bin_node() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_add
+ *
+ * Purpose: Add a section of free space in a direct block to the free list
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Tuesday, March 7, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5FS_add(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace, H5FS_section_info_t *node)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(H5FS_add, FAIL)
+
+#ifdef QAK
+HDfprintf(stderr, "%s: node->size = %Hu, node->addr = %a\n", FUNC, node->size, node->addr);
+#endif /* QAK */
+
+ /* Check arguments. */
+ HDassert(fspace);
+ HDassert(node);
+ HDassert(H5F_addr_defined(node->addr));
+ HDassert(node->size);
+
+ /* Check for special cases of # of sections on free list */
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->hdr->sect_count = %Hu\n", FUNC, fspace->hdr->sect_count);
+#endif /* QAK */
+ if(fspace->hdr->sect_count == 0) {
+ HDassert(fspace->single == NULL);
+
+ /* Capture single section's information */
+ fspace->single = node;
+
+ /* Increment amount of space required to serialize all sections */
+ fspace->serial_size += fspace->sect_cls[node->cls->type].serial_size;
+
+ /* Increment number of section sizes */
+ fspace->size_count++;
+ } /* end if */
+ else {
+ /* Have a single section, put it into the bins */
+/* XXX: Take out the "&& !fspace->using_bins" when bins converted back into single section */
+ if(fspace->hdr->sect_count == 1 && !fspace->using_bins) {
+ HDassert(fspace->single);
+
+ /* Decrement amount of space required to serialize all sections */
+ /* (will be re-incremented in the 'add bin node' routine) */
+ fspace->serial_size -= fspace->sect_cls[fspace->single->cls->type].serial_size;
+
+ /* Check if we should allocate the bins */
+ if(fspace->bins == NULL)
+ /* Allocate the bins for free space sizes */
+ if(NULL == (fspace->bins = H5FL_SEQ_CALLOC(H5FS_bin_t, fspace->nbins)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for free space bins")
+
+ /* Insert the current single section into the bins */
+ if(H5FS_add_bin_node(fspace, fspace->single) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTINSERT, FAIL, "can't insert free space node into skip list")
+ fspace->single = NULL;
+
+ /* Decrement number of section sizes */
+ /* (will be re-incremented in the 'add bin node' routine) */
+ fspace->size_count--;
+
+ /* Using bins for storing nodes now */
+ fspace->using_bins = TRUE;
+ } /* end if */
+ HDassert(fspace->single == NULL);
+
+ /* Put new section into bins */
+ if(H5FS_add_bin_node(fspace, node) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTINSERT, FAIL, "can't insert free space node into skip list")
+ } /* end else */
+
+ /* Update section info & check if we need more room for the serialized free space sections */
+ if(H5FS_sect_increase(f, dxpl_id, fspace) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTINSERT, FAIL, "can't increase free space section size on disk")
+
+ /* Increment amount of free space managed */
+ fspace->hdr->tot_space += node->size;
+
+ /* Mark free space sections as changed */
+ fspace->dirty = TRUE;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_add() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_find_bin_node
+ *
+ * Purpose: Locate a section of free space (in existing free space list
+ * bins) that is large enough to fulfill request.
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, March 20, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static htri_t
+H5FS_find_bin_node(H5FS_t *fspace, hsize_t request, H5FS_section_info_t **node)
+{
+ H5FS_node_t *fspace_node; /* Free list size node */
+ unsigned bin; /* Bin to put the free space section in */
+ htri_t ret_value = FALSE; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_find_bin_node)
+
+ /* Check arguments. */
+ HDassert(fspace);
+ HDassert(fspace->bins);
+ HDassert(request > 0);
+ HDassert(node);
+
+ /* Determine correct bin which holds items of at least the section's size */
+ bin = H5V_log2_gen(request);
+ HDassert(bin < fspace->nbins);
+ while(bin < fspace->nbins && fspace->bins[bin].bin_list == NULL)
+ bin++;
+
+ /* Find the first free space section that is large enough to fulfill request */
+ /* (Since the bins use skip lists to track the sizes of the address-ordered
+ * lists, this is actually a "best fit" algorithm)
+ */
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->nbins = %u\n", FUNC, fspace->nbins);
+HDfprintf(stderr, "%s: bin = %u\n", FUNC, bin);
+#endif /* QAK */
+ if(bin < fspace->nbins)
+ do {
+ /* Look for large enough free space section in this bin */
+ if(fspace->bins[bin].bin_list)
+ /* Check for large enough list of sections on list */
+ if((fspace_node = H5SL_greater(fspace->bins[bin].bin_list, &request))) {
+ /* Take first node off of the list (ie. node w/lowest address) */
+ if(NULL == (*node = H5SL_remove_first(fspace_node->sect_list)))
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTDELETE, FAIL, "can't remove free space node from skip list")
+
+ /* Check for no more nodes on list of that size */
+ if(H5SL_count(fspace_node->sect_list) == 0) {
+ H5FS_node_t *tmp_fspace_node; /* Free space list size node */
+
+ /* Remove size tracking list from bin */
+ tmp_fspace_node = H5SL_remove(fspace->bins[bin].bin_list, &fspace_node->sect_size);
+ if(tmp_fspace_node == NULL || tmp_fspace_node != fspace_node)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTDELETE, FAIL, "can't remove free space node from skip list")
+
+ /* Destroy skip list for size tracking node */
+ if(H5SL_close(fspace_node->sect_list) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTCLOSEOBJ, FAIL, "can't destroy size tracking node's skip list")
+
+ /* Release free space list node */
+ H5FL_FREE(H5FS_node_t, fspace_node);
+
+ /* Decrement number of section sizes */
+ fspace->size_count--;
+ } /* end if */
+
+ /* Decrement the # of sections in this bin */
+ /* (Different from the # of items in the bin's skiplist, since each node on
+ * the bin's skiplist is also a skiplist...)
+ */
+ fspace->bins[bin].sect_count--;
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->bins[%u].sect_count = %Zu\n", FUNC, bin, fspace->bins[bin].sect_count);
+#endif /* QAK */
+
+ /* Decrement amount of space required to serialize all sections */
+ fspace->serial_size -= fspace->sect_cls[(*node)->cls->type].serial_size;
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->serial_size = %Zu\n", FUNC, fspace->serial_size);
+HDfprintf(stderr, "%s: fspace->sect_cls[(*node)->cls->type].serial_size = %Zu\n", FUNC, fspace->sect_cls[(*node)->cls->type].serial_size);
+#endif /* QAK */
+
+ HGOTO_DONE(TRUE)
+ } /* end if */
+
+ /* Advance to next larger bin */
+ bin++;
+ } while(bin < fspace->nbins);
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_find_bin_node() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_find
+ *
+ * Purpose: Locate a section of free space (in existing free space list) that
+ * is large enough to fulfill request.
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Tuesday, March 7, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+htri_t
+H5FS_find(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace, hsize_t request, H5FS_section_info_t **node)
+{
+ htri_t ret_value = FALSE; /* Return value */
+
+ FUNC_ENTER_NOAPI(H5FS_find, FAIL)
+
+#ifdef QAK
+HDfprintf(stderr, "%s: request = %Hu\n", FUNC, request);
+#endif /* QAK */
+
+ /* Check arguments. */
+ HDassert(fspace);
+ HDassert(request);
+ HDassert(node);
+
+ /* Check for any sections on free space list */
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->hdr->sect_count = %Hu\n", FUNC, fspace->hdr->sect_count);
+#endif /* QAK */
+ if(fspace->hdr->sect_count > 0) {
+ /* Check for single section */
+/* XXX: Take out the "&& !fspace->using_bins" when bins converted back into single section */
+ if(fspace->hdr->sect_count == 1 && !fspace->using_bins) {
+ HDassert(fspace->single);
+
+ /* See if single section is large enough */
+ if(fspace->single->size >= request) {
+ /* Use 'single' section */
+ *node = fspace->single;
+ fspace->single = NULL;
+
+ /* Decrement amount of space required to serialize all sections */
+ fspace->serial_size -= fspace->sect_cls[(*node)->cls->type].serial_size;
+
+ /* Decrement number of section sizes */
+ fspace->size_count--;
+
+ /* Found a good section */
+ ret_value = TRUE;
+ } /* end if */
+ else
+ HGOTO_DONE(FALSE)
+ } /* end if */
+ else {
+ HDassert(fspace->single == NULL);
+
+ /* Look for node in bins */
+ if((ret_value = H5FS_find_bin_node(fspace, request, node)) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTFREE, FAIL, "can't remove section from bins")
+ } /* end else */
+
+ /* Decrement # of sections on free list, if we found an object */
+ if(ret_value > 0) {
+ /* Update section info & check if we need less room for the serialized free space sections */
+ if(H5FS_sect_decrease(f, dxpl_id, fspace) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTINSERT, FAIL, "can't increase free space section size on disk")
+
+ /* Decrement amount of free space managed */
+ fspace->hdr->tot_space -= (*node)->size;
+
+ /* Mark free space sections as changed */
+ fspace->dirty = TRUE;
+ } /* end if */
+ } /* end if */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_find() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_node_free_cb
+ *
+ * Purpose: Free a size-tracking node for a bin
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Saturday, March 11, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_node_free_cb(void *item, void UNUSED *key, void *op_data)
+{
+ H5FS_node_t *fspace_node = (H5FS_node_t *)item; /* Temporary pointer to free space list node */
+
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5FS_node_free_cb)
+
+ HDassert(fspace_node);
+
+ /* Release the skip list for sections of this size */
+ H5SL_destroy(fspace_node->sect_list, (H5SL_operator_t)op_data, NULL);
+
+ /* Release free space list node */
+ H5FL_FREE(H5FS_node_t, fspace_node);
+
+ FUNC_LEAVE_NOAPI(0)
+} /* H5FS_node_free_cb() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_serialize_sect_cb
+ *
+ * Purpose: Skip list iterator callback to serialize free space sections
+ * of a particular size
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_serialize_sect_cb(void *_item, void UNUSED *key, void *_udata)
+{
+ H5FS_section_info_t *sect_info = (H5FS_section_info_t *)_item; /* Free space section to work on */
+ H5FS_iter_ud2_t *udata = (H5FS_iter_ud2_t *)_udata; /* Callback info */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_serialize_sect_cb)
+
+ /* Check arguments. */
+ HDassert(sect_info);
+ HDassert(udata->fspace);
+ HDassert(udata->p);
+
+ /* The address of the section */
+ UINT64ENCODE_VAR(*udata->p, sect_info->addr, udata->fspace->sect_off_size);
+#ifdef QAK
+HDfprintf(stderr, "%s: sect_info->addr = %a\n", FUNC, sect_info->addr);
+#endif /* QAK */
+
+ /* The type of this section */
+ *(*udata->p)++ = (uint8_t)sect_info->cls->type;
+#ifdef QAK
+HDfprintf(stderr, "%s: sect_info->cls->type = %u\n", FUNC, (unsigned)sect_info->cls->type);
+#endif /* QAK */
+
+ /* Call 'serialize' callback for this section */
+ if(sect_info->cls->serialize) {
+ if((*sect_info->cls->serialize)(sect_info, *udata->p) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTSERIALIZE, FAIL, "can't syncronize section")
+
+ /* Update offset in serialization buffer */
+ (*udata->p) += sect_info->cls->serial_size;
+ } /* end if */
+ else
+ HDassert(sect_info->cls->serial_size == 0);
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_serialize_sect_cb() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_serialize_node_cb
+ *
+ * Purpose: Skip list iterator callback to serialize free space sections
+ * in a bin
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_serialize_node_cb(void *_item, void UNUSED *key, void *_udata)
+{
+ H5FS_node_t *fspace_node = (H5FS_node_t *)_item; /* Free space size node to work on */
+ H5FS_iter_ud2_t *udata = (H5FS_iter_ud2_t *)_udata; /* Callback info */
+ size_t node_count; /* Number of sections of this size */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_serialize_node_cb)
+
+ /* Check arguments. */
+ HDassert(fspace_node);
+ HDassert(udata->fspace);
+ HDassert(udata->p);
+
+ /* The number of sections of this node's size */
+ node_count = H5SL_count(fspace_node->sect_list);
+ HDassert(node_count);
+ UINT64ENCODE_VAR(*udata->p, node_count, udata->sect_cnt_size);
+#ifdef QAK
+HDfprintf(stderr, "%s: node_count = %Zu\n", FUNC, node_count);
+#endif /* QAK */
+
+ /* The size of the sections for this node */
+ UINT64ENCODE_VAR(*udata->p, fspace_node->sect_size, udata->fspace->sect_len_size);
+#ifdef QAK
+HDfprintf(stderr, "%s: sect_size = %Hu\n", FUNC, fspace_node->sect_size);
+#endif /* QAK */
+
+ /* Iterate through all the sections of this size */
+ HDassert(fspace_node->sect_list);
+ if(H5SL_iterate(fspace_node->sect_list, H5FS_serialize_sect_cb, udata) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_BADITER, FAIL, "can't iterate over section nodes")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_serialize_node_cb() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_serialize_size
+ *
+ * Purpose: Determine serialized size of all sections in free space manager
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: (can't fail)
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static size_t
+H5FS_serialize_size(H5FS_t *fspace)
+{
+ size_t sect_buf_size; /* Section buffer size */
+
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5FS_serialize_size)
+
+ /* Check arguments. */
+ HDassert(fspace);
+
+ /* Compute the size of the buffer required to serialize all the sections */
+
+ /* Serialized sections prefix */
+ sect_buf_size = fspace->sect_prefix_size;
+
+ /* Count for each differently sized section */
+ sect_buf_size += fspace->size_count * MAX(1, ((H5V_log2_gen(fspace->hdr->sect_count) + 7) / 8));
+
+ /* Size for each differently sized section */
+ sect_buf_size += fspace->size_count * fspace->sect_len_size;
+
+ /* Offsets of each section in address space */
+ sect_buf_size += fspace->hdr->sect_count * fspace->sect_off_size;
+
+ /* Class of each section */
+ sect_buf_size += fspace->hdr->sect_count * 1;
+
+ /* Extra space required to serialize each section */
+ sect_buf_size += fspace->serial_size;
+
+ FUNC_LEAVE_NOAPI(sect_buf_size)
+} /* H5FS_serialize_size() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_serialize_bins
+ *
+ * Purpose: Serialize all bins into proper form on disk
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_serialize_bins(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace)
+{
+ H5FS_iter_ud2_t udata; /* User data for callbacks */
+ uint8_t *sect_buf = NULL; /* Buffer for sections */
+ uint8_t *p; /* Pointer into raw data buffer */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_serialize_bins)
+
+ /* Check arguments. */
+ HDassert(f);
+ HDassert(fspace);
+ HDassert(fspace->dirty);
+
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->hdr->sect_count = %Hu\n", FUNC, fspace->hdr->sect_count);
+HDfprintf(stderr, "%s: fspace->serial_size = %Zu\n", FUNC, fspace->serial_size);
+#endif /* QAK */
+
+ /* Allocate space for the buffer to serialize the sections into */
+ if(NULL == (sect_buf = H5FL_BLK_MALLOC(sect_block, (size_t)fspace->hdr->sect_size)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
+
+ /* Serialize free sections into buffer available */
+ p = sect_buf;
+
+ /* Magic number */
+ HDmemcpy(p, H5FS_SECTS_MAGIC, H5FS_SIZEOF_MAGIC);
+ p += H5FS_SIZEOF_MAGIC;
+
+ /* Version # */
+ *p++ = H5FS_SECTS_VERSION;
+
+ /* Metadata status flags */
+/* XXX: Set this? */
+ *p++ = 0;
+
+ /* Metadata checksum */
+/* XXX: Set this! (After all the metadata is in the buffer) */
+ HDmemset(p, 0, 4);
+ p += 4;
+
+ /* Address of free space header for these sections */
+ H5F_addr_encode(f, &p, fspace->addr);
+
+ /* Set up user data for iterator */
+ udata.fspace = fspace;
+ udata.p = &p;
+ udata.sect_cnt_size = MAX(1, (H5V_log2_gen(fspace->hdr->sect_count) + 7) / 8);
+#ifdef QAK
+HDfprintf(stderr, "%s: udata.sect_cnt_size = %u\n", FUNC, udata.sect_cnt_size);
+#endif /* QAK */
+
+ /* Serialize sections, if there are any */
+ if(fspace->hdr->sect_count) {
+ /* Check for whether to serialize a single section */
+/* XXX: Take out the "&& !fspace->using_bins" when bins converted back into single section */
+ if(fspace->hdr->sect_count == 1 && !fspace->using_bins) {
+#ifdef QAK
+HDfprintf(stderr, "%s: Serializing single section\n", FUNC);
+#endif /* QAK */
+ /* Sanity check */
+ HDassert(fspace->single != NULL);
+
+ /* The number of sections */
+ UINT64ENCODE_VAR(p, 1, udata.sect_cnt_size);
+
+ /* The size of the section */
+ UINT64ENCODE_VAR(p, fspace->single->size, fspace->sect_len_size);
+
+ /* Serialize the single node */
+ if(H5FS_serialize_sect_cb(fspace->single, NULL, &udata) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTSERIALIZE, FAIL, "can't syncronize single section")
+ } /* end if */
+ else {
+ unsigned bin; /* Current bin we are on */
+
+ /* Iterate over all the bins */
+#ifdef QAK
+HDfprintf(stderr, "%s: Serializing section bins\n", FUNC);
+#endif /* QAK */
+ for(bin = 0; bin < fspace->nbins; bin++) {
+ /* Check if there are any sections in this bin */
+ if(fspace->bins[bin].bin_list) {
+ /* Iterate over list of section size nodes for bin */
+ if(H5SL_iterate(fspace->bins[bin].bin_list, H5FS_serialize_node_cb, &udata) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_BADITER, FAIL, "can't iterate over section size nodes")
+ } /* end if */
+ } /* end for */
+ } /* end else */
+ } /* end if */
+
+ /* Sanity check */
+ HDassert((size_t)(p - sect_buf) == fspace->hdr->sect_size);
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->hdr->sect_size = %Hu\n", FUNC, fspace->hdr->sect_size);
+#endif /* QAK */
+
+ /* Write buffer to disk */
+ HDassert(fspace->hdr->sect_size <= fspace->hdr->alloc_sect_size);
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->hdr->alloc_sect_size = %Hu\n", FUNC, fspace->hdr->alloc_sect_size);
+#endif /* QAK */
+ if(H5F_block_write(f, H5FD_MEM_FSPACE_SECTS, fspace->hdr->sect_addr, (size_t)fspace->hdr->sect_size, dxpl_id, sect_buf) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTFLUSH, FAIL, "unable to save free space sections to disk")
+
+done:
+ if(sect_buf)
+ H5FL_BLK_FREE(sect_block, sect_buf);
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_serialize_bins() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_deserialize_bins
+ *
+ * Purpose: Deserialize all bins from disk
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_deserialize_bins(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace)
+{
+ haddr_t fs_addr; /* Free space header address */
+ uint32_t metadata_chksum; /* Metadata checksum value */
+ uint8_t *sect_buf = NULL; /* Buffer for sections */
+ const uint8_t *p; /* Pointer into raw data buffer */
+ size_t old_sect_size; /* Section size */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_deserialize_bins)
+
+ /* Check arguments. */
+ HDassert(f);
+ HDassert(fspace);
+
+ /* Allocate space for the buffer to serialize the sections into */
+ old_sect_size = fspace->hdr->sect_size;
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->hdr->sect_size = %Hu\n", FUNC, fspace->hdr->sect_size);
+#endif /* QAK */
+ if(NULL == (sect_buf = H5FL_BLK_MALLOC(sect_block, (size_t)fspace->hdr->sect_size)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
+
+ /* Read buffer from disk */
+ if(H5F_block_read(f, H5FD_MEM_FSPACE_SECTS, fspace->hdr->sect_addr, (size_t)fspace->hdr->sect_size, dxpl_id, sect_buf) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_READERROR, FAIL, "can't read free space sections")
+
+ /* Deserialize free sections from buffer available */
+ p = sect_buf;
+
+ /* Magic number */
+ if(HDmemcmp(p, H5FS_SECTS_MAGIC, H5FS_SIZEOF_MAGIC))
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTLOAD, FAIL, "wrong free space sections signature")
+ p += H5FS_SIZEOF_MAGIC;
+
+ /* Version */
+ if(*p++ != H5FS_SECTS_VERSION)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTLOAD, FAIL, "wrong free space sections version")
+
+ /* Metadata flags (unused, currently) */
+/* XXX: Plan out metadata flags (including "read-only duplicate" feature) */
+ if(*p++ != 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTLOAD, FAIL, "unknown metadata flag in free space sections")
+
+ /* Metadata checksum (unused, currently) */
+ UINT32DECODE(p, metadata_chksum);
+/* XXX: Verify checksum */
+ if(metadata_chksum != 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTLOAD, FAIL, "incorrect metadata checksum for free space sections")
+
+ /* Address of free space header for these sections */
+ H5F_addr_decode(f, &p, &fs_addr);
+ if(H5F_addr_ne(fs_addr, fspace->addr))
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTLOAD, FAIL, "incorrect header address for free space sections")
+
+ /* Check for any serialized sections */
+ if(fspace->hdr->sect_count > 0) {
+ hsize_t old_sect_count; /* Section count from header */
+ unsigned sect_cnt_size; /* The size of the section size counts */
+
+ /* Compute the size of the section counts */
+ sect_cnt_size = MAX(1, (H5V_log2_gen(fspace->hdr->sect_count) + 7) / 8);
+#ifdef QAK
+HDfprintf(stderr, "%s: sect_cnt_size = %u\n", FUNC, sect_cnt_size);
+HDfprintf(stderr, "%s: fspace->sect_len_size = %u\n", FUNC, fspace->sect_len_size);
+#endif /* QAK */
+
+ /* Reset the section count, the "add" routine will update it */
+ old_sect_count = fspace->hdr->sect_count;
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->hdr->sect_count = %Hu\n", FUNC, fspace->hdr->sect_count);
+#endif /* QAK */
+ fspace->hdr->sect_count = 0;
+
+ /* Walk through the buffer, deserializing sections */
+ do {
+ hsize_t sect_size; /* Current section size */
+ size_t node_count; /* # of sections of this size */
+ size_t u; /* Local index variable */
+
+ /* The number of sections of this node's size */
+ UINT64DECODE_VAR(p, node_count, sect_cnt_size);
+#ifdef QAK
+HDfprintf(stderr, "%s: node_count = %Zu\n", FUNC, node_count);
+#endif /* QAK */
+ HDassert(node_count);
+
+ /* The size of the sections for this node */
+ UINT64DECODE_VAR(p, sect_size, fspace->sect_len_size);
+#ifdef QAK
+HDfprintf(stderr, "%s: sect_size = %Hu\n", FUNC, sect_size);
+#endif /* QAK */
+ HDassert(sect_size);
+
+ /* Loop over nodes of this size */
+ for(u = 0; u < node_count; u++) {
+ H5FS_section_info_t *new_sect; /* Section that was deserialized */
+ haddr_t sect_addr; /* Address of free space section in the address space */
+ unsigned sect_type; /* Type of free space section */
+
+ /* The address of the section */
+ UINT64DECODE_VAR(p, sect_addr, fspace->sect_off_size);
+#ifdef QAK
+HDfprintf(stderr, "%s: sect_addr = %a\n", FUNC, sect_addr);
+#endif /* QAK */
+
+ /* The type of this section */
+ sect_type = *p++;
+#ifdef QAK
+HDfprintf(stderr, "%s: sect_type = %u\n", FUNC, sect_type);
+#endif /* QAK */
+
+ /* Call 'deserialize' callback for this section */
+ HDassert(fspace->sect_cls[sect_type].deserialize);
+ if((*fspace->sect_cls[sect_type].deserialize)(fspace->sect_cls, p, sect_addr, sect_size, &new_sect) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTDECODE, FAIL, "can't deserialize section")
+ HDassert(new_sect);
+
+ /* Update offset in serialization buffer */
+ p += new_sect->cls->serial_size;
+
+ /* Insert section in free space manager */
+ if(H5FS_add(f, dxpl_id, fspace, new_sect) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTINSERT, FAIL, "can't add section to free space manager")
+ } /* end for */
+ } while(p < (sect_buf + old_sect_size));
+
+ /* Sanity check */
+ HDassert((size_t)(p - sect_buf) == old_sect_size);
+ HDassert(old_sect_size == fspace->hdr->sect_size);
+ HDassert(old_sect_count == fspace->hdr->sect_count);
+ } /* end if */
+
+done:
+ if(sect_buf)
+ H5FL_BLK_FREE(sect_block, sect_buf);
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_deserialize_bins() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_iterate_sect_cb
+ *
+ * Purpose: Skip list iterator callback to iterate over free space sections
+ * of a particular size
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Saturday, May 13, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_iterate_sect_cb(void *_item, void UNUSED *key, void *_udata)
+{
+ H5FS_section_info_t *sect_info = (H5FS_section_info_t *)_item; /* Free space section to work on */
+ H5FS_iter_ud3_t *udata = (H5FS_iter_ud3_t *)_udata; /* Callback info */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_iterate_sect_cb)
+
+ /* Check arguments. */
+ HDassert(sect_info);
+ HDassert(udata->fspace);
+ HDassert(udata->op);
+
+ /* Make callback for this section */
+ if((*udata->op)(sect_info, udata->op_data) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_BADITER, FAIL, "iteration callback failed")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_iterate_sect_cb() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_iterate_node_cb
+ *
+ * Purpose: Skip list iterator callback to iterate over free space sections
+ * in a bin
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Saturday, May 13, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_iterate_node_cb(void *_item, void UNUSED *key, void *_udata)
+{
+ H5FS_node_t *fspace_node = (H5FS_node_t *)_item; /* Free space size node to work on */
+ H5FS_iter_ud3_t *udata = (H5FS_iter_ud3_t *)_udata; /* Callback info */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_iterate_node_cb)
+
+ /* Check arguments. */
+ HDassert(fspace_node);
+ HDassert(udata->fspace);
+ HDassert(udata->op);
+
+ /* Iterate through all the sections of this size */
+ HDassert(fspace_node->sect_list);
+ if(H5SL_iterate(fspace_node->sect_list, H5FS_iterate_sect_cb, udata) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_BADITER, FAIL, "can't iterate over section nodes")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_iterate_node_cb() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_iterate
+ *
+ * Purpose: Iterate over all the sections managed
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Saturday, May 13, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5FS_iterate(H5FS_t *fspace, H5FS_operator_t op, void *op_data)
+{
+ H5FS_iter_ud3_t udata; /* User data for callbacks */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5FS_iterate)
+
+ /* Check arguments. */
+ HDassert(fspace);
+ HDassert(op);
+
+#ifdef QAK
+HDfprintf(stderr, "%s: fspace->hdr->sect_count = %Hu\n", FUNC, fspace->hdr->sect_count);
+#endif /* QAK */
+
+ /* Set up user data for iterator */
+ udata.fspace = fspace;
+ udata.op = op;
+ udata.op_data = op_data;
+
+ /* Iterate over sections, if there are any */
+ if(fspace->hdr->sect_count) {
+ /* Check for whether to iterate over a single section */
+/* XXX: Take out the "&& !fspace->using_bins" when bins converted back into single section */
+ if(fspace->hdr->sect_count == 1 && !fspace->using_bins) {
+#ifdef QAK
+HDfprintf(stderr, "%s: Iterating over a single section\n", FUNC);
+#endif /* QAK */
+ /* Sanity check */
+ HDassert(fspace->single != NULL);
+
+ /* "Iterate" over the single node */
+ if(H5FS_iterate_sect_cb(fspace->single, NULL, &udata) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_BADITER, FAIL, "can't 'iterate' over single section")
+ } /* end if */
+ else {
+ unsigned bin; /* Current bin we are on */
+
+ /* Iterate over all the bins */
+#ifdef QAK
+HDfprintf(stderr, "%s: Iterate over section bins\n", FUNC);
+#endif /* QAK */
+ for(bin = 0; bin < fspace->nbins; bin++) {
+ /* Check if there are any sections in this bin */
+ if(fspace->bins[bin].bin_list) {
+ /* Iterate over list of section size nodes for bin */
+ if(H5SL_iterate(fspace->bins[bin].bin_list, H5FS_iterate_node_cb, &udata) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_BADITER, FAIL, "can't iterate over section size nodes")
+ } /* end if */
+ } /* end for */
+ } /* end else */
+ } /* end if */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_iterate() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_flush_cb
+ *
+ * Purpose: Skip list iterator callback to syncronize free space sections
+ * in a free space manager with their serialized form for the
+ * metadata cache
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5FS_flush_cb(void *_item, void UNUSED *key, void *_udata)
+{
+ H5FS_t *fspace = (H5FS_t *)_item; /* Free space manager to syncronize */
+ H5FS_iter_ud1_t *udata = (H5FS_iter_ud1_t *)_udata; /* Callback info */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(H5FS_flush_cb, FAIL)
+
+ /* Check arguments. */
+ HDassert(fspace);
+ HDassert(udata->f);
+
+ /* Serialize the bins for this free space manager, if they are dirty */
+ if(fspace->dirty)
+ if(H5FS_serialize_bins(udata->f, udata->dxpl_id, fspace) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTSERIALIZE, FAIL, "can't syncronize bins")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_flush_cb() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_flush
+ *
+ * Purpose: Syncronize free space sections in all the free space
+ * managers with their serialized form for the metadata cache
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Monday, May 8, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5FS_flush(H5F_t *f, hid_t dxpl_id, unsigned UNUSED flags)
+{
+ H5FS_iter_ud1_t udata; /* Callback info */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(H5FS_flush, FAIL)
+
+ /* Check arguments. */
+ HDassert(f);
+
+ /* Set up callback information */
+ udata.f = f;
+ udata.dxpl_id = dxpl_id;
+
+ /* Iterate over open free space managers, to syncronize their section information */
+ HDassert(H5FS_open_g);
+ if(H5SL_iterate(H5FS_open_g, H5FS_flush_cb, &udata) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_BADITER, FAIL, "can't syncronize section info")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_flush() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5FS_close
+ *
+ * Purpose: Destroy & deallocate free list structure, serializing sections
+ * in the bins
+ *
+ * Return: Success: non-negative
+ *
+ * Failure: negative
+ *
+ * Programmer: Quincey Koziol
+ * Tuesday, March 7, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5FS_close(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace)
+{
+ unsigned u; /* Local index variable */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(H5FS_close, FAIL)
+
+ /* Check arguments. */
+ HDassert(f);
+ HDassert(fspace);
+
+ /* Remove the free space manager from the list of open free space managers */
+ if(H5FS_open_remove(fspace) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTRELEASE, FAIL, "can't remove free space header from open list")
+
+ /* Serialize the sections in the bins, if necessary */
+ if(fspace->dirty)
+ if(H5FS_serialize_bins(f, dxpl_id, fspace) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTSERIALIZE, FAIL, "can't syncronize bins")
+
+ /* Check for single section to free */
+/* XXX: Take out the "&& !fspace->using_bins" when bins converted back into single section */
+ if(fspace->hdr->sect_count == 1 && !fspace->using_bins) {
+ HDassert(fspace->single != NULL);
+ fspace->node_free_op(fspace->single, &fspace->single->addr, NULL);
+ fspace->single = NULL;
+ } /* end if */
+ HDassert(fspace->single == NULL);
+
+ /* Release bins for skip lists */
+ if(fspace->bins) {
+ /* Clear out lists of nodes */
+ for(u = 0; u < fspace->nbins; u++)
+ if(fspace->bins[u].bin_list) {
+ H5SL_destroy(fspace->bins[u].bin_list, H5FS_node_free_cb, (void *)fspace->node_free_op);
+ fspace->bins[u].bin_list = NULL;
+ } /* end if */
+
+ H5FL_SEQ_FREE(H5FS_bin_t, fspace->bins);
+ } /* end if */
+
+ /* Unpin the free space header in the cache */
+ if(H5AC_unpin_entry(f, fspace->hdr) < 0)
+ HGOTO_ERROR(H5E_FSPACE, H5E_CANTUNPIN, FAIL, "unable to unpin free space header")
+
+ /* Free free space info */
+ H5FL_FREE(H5FS_t, fspace);
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5FS_close() */
+