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authorRobb Matzke <matzke@llnl.gov>1998-03-30 19:24:08 (GMT)
committerRobb Matzke <matzke@llnl.gov>1998-03-30 19:24:08 (GMT)
commit78c1574378256975b39d4b65a011307a631dc667 (patch)
tree84e0dc9edf12a69a405c0d9da02803f2cc291382 /src/H5H.c
parent2d9f2282e6e639dc5a7881c5c55c3f56d43526b1 (diff)
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[svn-r333] Changes since 19980324
---------------------- ./MANIFEST ./src/H5HG.c [new] ./src/H5HGprivate.h [new] ./src/H5HGpublic.h [new] ./src/Makefile.in Added global heaps, H5HG. This compiles but is untested. ./src/H5D.c ./src/H5G.c ./src/H5Gnode.c ./src/H5Gstab.c ./src/H5HL.c [renamed from H5H.c] ./src/H5HLprivate.h [renamed from H5Hprivate.h] ./src/H5HLpublic.h [renamed from H5Hpublic.h] ./src/H5Oefl.c ./src/Makefile.in ./src/hdf5.h ./test/theap.c Renamed local heaps from H5H to H5HL. ./src/H5AC.c ./src/H5ACprivate.h ./src/debug.c Added debugging support for global heap collections. ./html/H5.format.html Ripped out the old small object heap documentation and added documentation for the new global heap. ./html/H5.api.html ./src/H5P.c ./src/H5Ppublic.h ./src/H5F.c ./src/H5Fprivate.h ./src/H5private.h The H5Pget_version() function no longer returns a small object heap version number. Instead, each collection of the global heap has its own version number instead of a single number in the file boot block. ./bin/release Omit files marked for removal by CVS even though the removal hasn't been committed yet. ./test/iopipe.c Removed warnings about casting unsigned int to double on Irix64. ./MANIFEST Removed ./test/testpar/phdf5sup.c
Diffstat (limited to 'src/H5H.c')
-rw-r--r--src/H5H.c1004
1 files changed, 0 insertions, 1004 deletions
diff --git a/src/H5H.c b/src/H5H.c
deleted file mode 100644
index 54e537a..0000000
--- a/src/H5H.c
+++ /dev/null
@@ -1,1004 +0,0 @@
-/*-------------------------------------------------------------------------
- * Copyright (C) 1997 National Center for Supercomputing Applications.
- * All rights reserved.
- *
- *-------------------------------------------------------------------------
- *
- * Created: H5H.c
- * Jul 16 1997
- * Robb Matzke <matzke@llnl.gov>
- *
- * Purpose: Heap functions for the global small object heap
- * and for local symbol table name heaps.
- *
- * Modifications:
- *
- * Robb Matzke, 5 Aug 1997
- * Added calls to H5E.
- *
- *-------------------------------------------------------------------------
- */
-#include <H5private.h> /*library */
-#include <H5ACprivate.h> /*cache */
-#include <H5Eprivate.h> /*error handling */
-#include <H5Hprivate.h> /*self */
-#include <H5MFprivate.h> /*file memory management */
-#include <H5MMprivate.h> /*core memory management */
-
-#define H5H_FREE_NULL 1 /*end of free list on disk */
-#define PABLO_MASK H5H_mask
-
-typedef struct H5H_free_t {
- size_t offset; /*offset of free block */
- size_t size; /*size of free block */
- struct H5H_free_t *prev; /*previous entry in free list */
- struct H5H_free_t *next; /*next entry in free list */
-} H5H_free_t;
-
-typedef struct H5H_t {
- intn dirty;
- haddr_t addr; /*address of data */
- size_t disk_alloc; /*data bytes allocated on disk */
- size_t mem_alloc; /*data bytes allocated in mem */
- uint8 *chunk; /*the chunk, including header */
- H5H_free_t *freelist; /*the free list */
-} H5H_t;
-
-/* PRIVATE PROTOTYPES */
-static H5H_t *H5H_load(H5F_t *f, const haddr_t *addr, const void *udata1,
- void *udata2);
-static herr_t H5H_flush(H5F_t *f, hbool_t dest, const haddr_t *addr,
- H5H_t *heap);
-
-/*
- * H5H inherits cache-like properties from H5AC
- */
-static const H5AC_class_t H5AC_HEAP[1] = {{
- H5AC_HEAP_ID,
- (void *(*)(H5F_t *, const haddr_t *, const void *, void *)) H5H_load,
- (herr_t (*)(H5F_t *, hbool_t, const haddr_t *, void *)) H5H_flush,
-}};
-
-/* Interface initialization */
-static intn interface_initialize_g = FALSE;
-#define INTERFACE_INIT NULL
-
-
-/*-------------------------------------------------------------------------
- * Function: H5H_create
- *
- * Purpose: Creates a new heap data structure on disk and caches it
- * in memory. SIZE_HINT is a hint for the initial size of the
- * data area of the heap. If size hint is invalid then a
- * reasonable (but probably not optimal) size will be chosen.
- * If the heap ever has to grow, then REALLOC_HINT is the
- * minimum amount by which the heap will grow.
- *
- * Return: Success: SUCCEED. The file address of new heap is
- * returned through the ADDR argument.
- *
- * Failure: FAIL
- *
- * Programmer: Robb Matzke
- * matzke@llnl.gov
- * Jul 16 1997
- *
- * Modifications:
- *
- * Robb Matzke, 5 Aug 1997
- * Takes a flag that determines the type of heap that is
- * created.
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5H_create(H5F_t *f, H5H_type_t heap_type, size_t size_hint,
- haddr_t *addr/*out*/)
-{
- H5H_t *heap = NULL;
- size_t total_size; /*total heap size on disk */
-
- FUNC_ENTER(H5H_create, FAIL);
-
- /* check arguments */
- assert(f);
- assert(addr);
-#ifndef NDEBUG
- if (H5H_GLOBAL == heap_type) {
- fprintf(stderr, "H5H_create: a local heap is used as the global "
- "heap\n");
- }
-#endif
-
- if (size_hint && size_hint < H5H_SIZEOF_FREE(f)) {
- size_hint = H5H_SIZEOF_FREE(f);
- }
- size_hint = H5H_ALIGN(size_hint);
-
- /* allocate file version */
- total_size = H5H_SIZEOF_HDR(f) + size_hint;
- if (H5MF_alloc(f, H5MF_META, total_size, addr/*out*/) < 0) {
- HRETURN_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL,
- "unable to allocate file memory");
- }
-
- /* allocate memory version */
- heap = H5MM_xcalloc(1, sizeof(H5H_t));
- heap->addr = *addr;
- H5F_addr_inc(&(heap->addr), H5H_SIZEOF_HDR(f));
- heap->disk_alloc = size_hint;
- heap->mem_alloc = size_hint;
- heap->chunk = H5MM_xcalloc(1, H5H_SIZEOF_HDR(f) + size_hint);
-
- /* free list */
- if (size_hint) {
- heap->freelist = H5MM_xmalloc(sizeof(H5H_free_t));
- heap->freelist->offset = 0;
- heap->freelist->size = size_hint;
- heap->freelist->prev = heap->freelist->next = NULL;
- } else {
- heap->freelist = NULL;
- }
-
- /* add to cache */
- heap->dirty = 1;
- if (H5AC_set(f, H5AC_HEAP, addr, heap) < 0) {
- heap->chunk = H5MM_xfree(heap->chunk);
- heap->freelist = H5MM_xfree(heap->freelist);
- HRETURN_ERROR(H5E_HEAP, H5E_CANTINIT, FAIL,
- "unable to cache heap");
- }
- FUNC_LEAVE(SUCCEED);
-}
-
-/*-------------------------------------------------------------------------
- * Function: H5H_load
- *
- * Purpose: Loads a heap from disk.
- *
- * Return: Success: Ptr to heap memory data structure.
- *
- * Failure: NULL
- *
- * Programmer: Robb Matzke
- * matzke@llnl.gov
- * Jul 17 1997
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static H5H_t *
-H5H_load(H5F_t *f, const haddr_t *addr, const void *udata1, void *udata2)
-{
- uint8 hdr[52];
- const uint8 *p = NULL;
- H5H_t *heap = NULL;
- H5H_free_t *fl = NULL, *tail = NULL;
- size_t free_block = H5H_FREE_NULL;
- H5H_t *ret_value = NULL;
-
- FUNC_ENTER(H5H_load, NULL);
-
- /* check arguments */
- assert(f);
- assert(addr && H5F_addr_defined(addr));
- assert(H5H_SIZEOF_HDR(f) <= sizeof hdr);
- assert(!udata1);
- assert(!udata2);
-
- if (H5F_block_read(f, addr, H5H_SIZEOF_HDR(f), hdr) < 0) {
- HRETURN_ERROR(H5E_HEAP, H5E_READERROR, NULL,
- "unable to read heap header");
- }
- p = hdr;
- heap = H5MM_xcalloc(1, sizeof(H5H_t));
-
- /* magic number */
- if (HDmemcmp(hdr, H5H_MAGIC, H5H_SIZEOF_MAGIC)) {
- HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, NULL,
- "bad heap signature");
- }
- p += H5H_SIZEOF_MAGIC;
-
- /* Reserved */
- p += 4;
-
- /* heap data size */
- H5F_decode_length(f, p, heap->disk_alloc);
- heap->mem_alloc = heap->disk_alloc;
-
- /* free list head */
- H5F_decode_length(f, p, free_block);
- if (free_block != H5H_FREE_NULL && free_block >= heap->disk_alloc) {
- HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, NULL,
- "bad heap free list");
- }
-
- /* data */
- H5F_addr_decode(f, &p, &(heap->addr));
- heap->chunk = H5MM_xcalloc(1, H5H_SIZEOF_HDR(f) + heap->mem_alloc);
- if (heap->disk_alloc &&
- H5F_block_read(f, &(heap->addr), heap->disk_alloc,
- heap->chunk + H5H_SIZEOF_HDR(f)) < 0) {
- HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, NULL,
- "unable to read heap data");
- }
-
- /* free list */
- while (H5H_FREE_NULL != free_block) {
- if (free_block >= heap->disk_alloc) {
- HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, NULL,
- "bad heap free list");
- }
- fl = H5MM_xmalloc(sizeof(H5H_free_t));
- fl->offset = free_block;
- fl->prev = tail;
- fl->next = NULL;
- if (tail) tail->next = fl;
- tail = fl;
- if (!heap->freelist) heap->freelist = fl;
-
- p = heap->chunk + H5H_SIZEOF_HDR(f) + free_block;
- H5F_decode_length(f, p, free_block);
- H5F_decode_length(f, p, fl->size);
-
- if (fl->offset + fl->size > heap->disk_alloc) {
- HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, NULL,
- "bad heap free list");
- }
- }
-
- ret_value = heap;
-
- done:
- if (!ret_value && heap) {
- heap->chunk = H5MM_xfree(heap->chunk);
- H5MM_xfree(heap);
- for (fl = heap->freelist; fl; fl = tail) {
- tail = fl->next;
- H5MM_xfree(fl);
- }
- }
- FUNC_LEAVE(ret_value);
-}
-
-/*-------------------------------------------------------------------------
- * Function: H5H_flush
- *
- * Purpose: Flushes a heap from memory to disk if it's dirty. Optionally
- * deletes the heap from memory.
- *
- * Return: Success: SUCCEED
- *
- * Failure: FAIL
- *
- * Programmer: Robb Matzke
- * matzke@llnl.gov
- * Jul 17 1997
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-H5H_flush(H5F_t *f, hbool_t destroy, const haddr_t *addr, H5H_t *heap)
-{
- uint8 *p = heap->chunk;
- H5H_free_t *fl = heap->freelist;
- haddr_t hdr_end_addr;
-
- FUNC_ENTER(H5H_flush, FAIL);
-
- /* check arguments */
- assert(f);
- assert(addr && H5F_addr_defined(addr));
- assert(heap);
-
- if (heap->dirty) {
- /*
- * If the heap grew larger than disk storage then move the
- * data segment of the heap to a larger contiguous block of
- * disk storage.
- */
- if (heap->mem_alloc > heap->disk_alloc) {
- haddr_t old_addr = heap->addr, new_addr;
- if (H5MF_alloc(f, H5MF_META, heap->mem_alloc,
- &new_addr/*out*/)<0) {
- HRETURN_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL,
- "unable to allocate file space for heap");
- }
- heap->addr = new_addr;
- H5MF_free(f, &old_addr, heap->disk_alloc);
- H5E_clear(); /*don't really care if the free failed */
- heap->disk_alloc = heap->mem_alloc;
- }
-
- /*
- * Write the header.
- */
- HDmemcpy(p, H5H_MAGIC, H5H_SIZEOF_MAGIC);
- p += H5H_SIZEOF_MAGIC;
- *p++ = 0; /*reserved*/
- *p++ = 0; /*reserved*/
- *p++ = 0; /*reserved*/
- *p++ = 0; /*reserved*/
- H5F_encode_length(f, p, heap->mem_alloc);
- H5F_encode_length(f, p, fl ? fl->offset : H5H_FREE_NULL);
- H5F_addr_encode(f, &p, &(heap->addr));
-
- /*
- * Write the free list.
- */
- while (fl) {
- assert (fl->offset == H5H_ALIGN (fl->offset));
- p = heap->chunk + H5H_SIZEOF_HDR(f) + fl->offset;
- if (fl->next) {
- H5F_encode_length(f, p, fl->next->offset);
- } else {
- H5F_encode_length(f, p, H5H_FREE_NULL);
- }
- H5F_encode_length(f, p, fl->size);
- fl = fl->next;
- }
-
- /*
- * Copy buffer to disk.
- */
- hdr_end_addr = *addr;
- H5F_addr_inc(&hdr_end_addr, H5H_SIZEOF_HDR(f));
- if (H5F_addr_eq(&(heap->addr), &hdr_end_addr)) {
- /* The header and data are contiguous */
- if (H5F_block_write(f, addr, H5H_SIZEOF_HDR(f) + heap->disk_alloc,
- heap->chunk) < 0) {
- HRETURN_ERROR(H5E_HEAP, H5E_WRITEERROR, FAIL,
- "unable to write heap header and data to disk");
- }
- } else {
- if (H5F_block_write(f, addr, H5H_SIZEOF_HDR(f), heap->chunk) < 0) {
- HRETURN_ERROR(H5E_HEAP, H5E_WRITEERROR, FAIL,
- "unable to write heap header to disk");
- }
- if (H5F_block_write(f, &(heap->addr), heap->disk_alloc,
- heap->chunk + H5H_SIZEOF_HDR(f)) < 0) {
- HRETURN_ERROR(H5E_HEAP, H5E_WRITEERROR, FAIL,
- "unable to write heap data to disk");
- }
- }
-
- heap->dirty = 0;
- }
-
- /*
- * Should we destroy the memory version?
- */
- if (destroy) {
- heap->chunk = H5MM_xfree(heap->chunk);
- while (heap->freelist) {
- fl = heap->freelist;
- heap->freelist = fl->next;
- H5MM_xfree(fl);
- }
- H5MM_xfree(heap);
- }
- FUNC_LEAVE(SUCCEED);
-}
-
-/*-------------------------------------------------------------------------
- * Function: H5H_read
- *
- * Purpose: Reads some object (or part of an object) from the heap
- * whose address is ADDR in file F. OFFSET is the byte offset
- * from the beginning of the heap at which to begin reading
- * and SIZE is the number of bytes to read.
- *
- * If BUF is the null pointer then a buffer is allocated by
- * this function.
- *
- * Attempting to read past the end of an object may cause this
- * function to fail.
- *
- * If the heap address ADDR is the the null pointer then the
- * address comes from the H5F_t global heap field.
- *
- * Return: Success: BUF (or the allocated buffer)
- *
- * Failure: NULL
- *
- * Programmer: Robb Matzke
- * matzke@llnl.gov
- * Jul 16 1997
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-void *
-H5H_read(H5F_t *f, const haddr_t *addr, size_t offset, size_t size, void *buf)
-{
- H5H_t *heap = NULL;
-
- FUNC_ENTER(H5H_read, NULL);
-
- /* check arguments */
- assert(f);
- if (!addr) addr = &(f->shared->smallobj_addr);
- assert(H5F_addr_defined(addr));
-
- if (NULL == (heap = H5AC_find(f, H5AC_HEAP, addr, NULL, NULL))) {
- HRETURN_ERROR(H5E_HEAP, H5E_CANTLOAD, NULL,
- "unable to load heap");
- }
- assert(offset < heap->mem_alloc);
- assert(offset + size <= heap->mem_alloc);
-
- if (!buf) buf = H5MM_xmalloc(size);
- HDmemcpy(buf, heap->chunk + H5H_SIZEOF_HDR(f) + offset, size);
-
- FUNC_LEAVE(buf);
-}
-
-/*-------------------------------------------------------------------------
- * Function: H5H_peek
- *
- * Purpose: This function is a more efficient version of H5H_read.
- * Instead of copying a heap object into a caller-supplied
- * buffer, this function returns a pointer directly into the
- * cache where the heap is being held. Thus, the return pointer
- * is valid only until the next call to the cache.
- *
- * The address of the heap is ADDR in file F. OFFSET is the
- * byte offset of the object from the beginning of the heap and
- * may include an offset into the interior of the object.
- *
- * If the heap address ADDR is the null pointer then
- * the address comes from the H5F_t global heap field.
- *
- * Return: Success: Ptr to the object. The pointer points to
- * a chunk of memory large enough to hold the
- * object from the specified offset (usually
- * the beginning of the object) to the end
- * of the object. Do not attempt to read past
- * the end of the object.
- *
- * Failure: NULL
- *
- * Programmer: Robb Matzke
- * matzke@llnl.gov
- * Jul 16 1997
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-const void *
-H5H_peek(H5F_t *f, const haddr_t *addr, size_t offset)
-{
- H5H_t *heap = NULL;
- const void *retval = NULL;
-
- FUNC_ENTER(H5H_peek, NULL);
-
- /* check arguments */
- assert(f);
- if (!addr) addr = &(f->shared->smallobj_addr);
- assert(H5F_addr_defined(addr));
-
- if (NULL == (heap = H5AC_find(f, H5AC_HEAP, addr, NULL, NULL))) {
- HRETURN_ERROR(H5E_HEAP, H5E_CANTLOAD, NULL,
- "unable to load heap");
- }
- assert(offset < heap->mem_alloc);
-
- retval = heap->chunk + H5H_SIZEOF_HDR(f) + offset;
- FUNC_LEAVE(retval);
-}
-
-/*-------------------------------------------------------------------------
- * Function: H5H_remove_free
- *
- * Purpose: Removes free list element FL from the specified heap and
- * frees it.
- *
- * Return: NULL
- *
- * Programmer: Robb Matzke
- * matzke@llnl.gov
- * Jul 17 1997
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static H5H_free_t *
-H5H_remove_free(H5H_t *heap, H5H_free_t *fl)
-{
- if (fl->prev) fl->prev->next = fl->next;
- if (fl->next) fl->next->prev = fl->prev;
-
- if (!fl->prev) heap->freelist = fl->next;
- return H5MM_xfree(fl);
-}
-
-/*-------------------------------------------------------------------------
- * Function: H5H_insert
- *
- * Purpose: Inserts a new item into the heap.
- *
- * If the heap address ADDR is the null pointer then
- * the address comes from the H5F_t global heap field.
- *
- * Return: Success: Offset of new item within heap.
- *
- * Failure: (size_t)(-1)
- *
- * Programmer: Robb Matzke
- * matzke@llnl.gov
- * Jul 17 1997
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-size_t
-H5H_insert(H5F_t *f, const haddr_t *addr, size_t buf_size, const void *buf)
-{
- H5H_t *heap = NULL;
- H5H_free_t *fl = NULL, *max_fl = NULL;
- size_t offset = 0;
- size_t need_size, old_size, need_more;
- hbool_t found;
-#ifndef NDEBUG
- static int nmessages = 0;
-#endif
-
- FUNC_ENTER(H5H_insert, (size_t)(-1));
-
- /* check arguments */
- assert(f);
- if (!addr) addr = &(f->shared->smallobj_addr);
- assert(H5F_addr_defined(addr));
- assert(buf_size > 0);
- assert(buf);
-
- if (NULL == (heap = H5AC_find(f, H5AC_HEAP, addr, NULL, NULL))) {
- HRETURN_ERROR(H5E_HEAP, H5E_CANTLOAD, (size_t)(-1),
- "unable to load heap");
- }
- heap->dirty += 1;
-
- /*
- * In order to keep the free list descriptors aligned on word boundaries,
- * whatever that might mean, we round the size up to the next multiple of
- * a word.
- */
- need_size = H5H_ALIGN(buf_size);
-
- /*
- * Look for a free slot large enough for this object and which would
- * leave zero or at least H5G_SIZEOF_FREE bytes left over.
- */
- for (fl=heap->freelist, found=FALSE; fl; fl=fl->next) {
- if (fl->size > need_size &&
- fl->size - need_size >= H5H_SIZEOF_FREE(f)) {
- /* a bigger free block was found */
- offset = fl->offset;
- fl->offset += need_size;
- fl->size -= need_size;
- assert (fl->offset==H5H_ALIGN (fl->offset));
- assert (fl->size==H5H_ALIGN (fl->size));
- found = TRUE;
- break;
- } else if (fl->size == need_size) {
- /* free block of exact size found */
- offset = fl->offset;
- fl = H5H_remove_free(heap, fl);
- found = TRUE;
- break;
- } else if (!max_fl || max_fl->offset < fl->offset) {
- /* use worst fit */
- max_fl = fl;
- }
- }
-
- /*
- * If no free chunk was large enough, then allocate more space and
- * add it to the free list. If the heap ends with a free chunk, we
- * can extend that free chunk. Otherwise we'll have to make another
- * free chunk. If the heap must expand, we double its size.
- */
- if (found==FALSE) {
- need_more = MAX3(need_size, heap->mem_alloc, H5H_SIZEOF_FREE(f));
-
- if (max_fl && max_fl->offset + max_fl->size == heap->mem_alloc) {
- /*
- * Increase the size of the maximum free block.
- */
- offset = max_fl->offset;
- max_fl->offset += need_size;
- max_fl->size += need_more - need_size;
- assert (max_fl->offset==H5H_ALIGN (max_fl->offset));
- assert (max_fl->size==H5H_ALIGN (max_fl->size));
-
- if (max_fl->size < H5H_SIZEOF_FREE(f)) {
-#ifndef NDEBUG
- if (max_fl->size) {
- fprintf(stderr, "H5H_insert: lost %lu bytes at line %d\n",
- (unsigned long) (max_fl->size), __LINE__);
- if (0 == nmessages++) {
- fprintf(stderr, "Messages from H5H_insert() will go "
- "away when assertions are turned off.\n");
- }
- }
-#endif
- max_fl = H5H_remove_free(heap, max_fl);
- }
- } else {
- /*
- * Create a new free list element large enough that we can
- * take some space out of it right away.
- */
- offset = heap->mem_alloc;
- if (need_more - need_size >= H5H_SIZEOF_FREE(f)) {
- fl = H5MM_xmalloc(sizeof(H5H_free_t));
- fl->offset = heap->mem_alloc + need_size;
- fl->size = need_more - need_size;
- assert (fl->offset==H5H_ALIGN (fl->offset));
- assert (fl->size==H5H_ALIGN (fl->size));
- fl->prev = NULL;
- fl->next = heap->freelist;
- if (heap->freelist) heap->freelist->prev = fl;
- heap->freelist = fl;
-#ifndef NDEBUG
- } else if (need_more > need_size) {
- fprintf(stderr, "H5H_insert: lost %lu bytes at line %d\n",
- (unsigned long) (need_more - need_size), __LINE__);
- if (0 == nmessages++) {
- fprintf(stderr, "Messages from H5H_insert() will go away "
- "when assertions are turned off.\n");
- }
-#endif
- }
- }
-
-#ifndef NDEBUG
- fprintf(stderr, "H5H_insert: resize mem buf from %lu to %lu bytes\n",
- (unsigned long) (heap->mem_alloc),
- (unsigned long) (heap->mem_alloc + need_more));
- if (0 == nmessages++) {
- fprintf(stderr, "Messages from H5H_insert() will go away "
- "when assertions are turned off.\n");
- }
-#endif
- old_size = heap->mem_alloc;
- heap->mem_alloc += need_more;
- heap->chunk = H5MM_xrealloc(heap->chunk,
- H5H_SIZEOF_HDR(f) + heap->mem_alloc);
-
- /* clear new section so junk doesn't appear in the file */
- HDmemset(heap->chunk + H5H_SIZEOF_HDR(f) + old_size, 0, need_more);
- }
- /*
- * Copy the data into the heap
- */
- HDmemcpy(heap->chunk + H5H_SIZEOF_HDR(f) + offset, buf, buf_size);
- FUNC_LEAVE(offset);
-}
-
-/*-------------------------------------------------------------------------
- * Function: H5H_write
- *
- * Purpose: Writes (overwrites) the object (or part of object) stored
- * in BUF to the heap at file address ADDR in file F. The
- * writing begins at byte offset OFFSET from the beginning of
- * the heap and continues for SIZE bytes.
- *
- * Do not partially write an object to create it; the first
- * write for an object must be for the entire object.
- *
- * If the heap address ADDR is the null pointer then
- * the address comes from the H5F_t global heap field.
- *
- * Return: Success: SUCCEED
- *
- * Failure: FAIL
- *
- * Programmer: Robb Matzke
- * matzke@llnl.gov
- * Jul 16 1997
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5H_write(H5F_t *f, const haddr_t *addr, size_t offset, size_t size,
- const void *buf)
-{
- H5H_t *heap = NULL;
-
- FUNC_ENTER(H5H_write, FAIL);
-
- /* check arguments */
- assert(f);
- if (!addr) addr = &(f->shared->smallobj_addr);
- assert(H5F_addr_defined(addr));
- assert(buf);
- assert (offset==H5H_ALIGN (offset));
-
- if (NULL == (heap = H5AC_find(f, H5AC_HEAP, addr, NULL, NULL))) {
- HRETURN_ERROR(H5E_HEAP, H5E_CANTLOAD, FAIL,
- "unable to load heap");
- }
- assert(offset < heap->mem_alloc);
- assert(offset + size <= heap->mem_alloc);
-
- heap->dirty += 1;
- HDmemcpy(heap->chunk + H5H_SIZEOF_HDR(f) + offset, buf, size);
-
- FUNC_LEAVE(SUCCEED);
-}
-
-/*-------------------------------------------------------------------------
- * Function: H5H_remove
- *
- * Purpose: Removes an object or part of an object from the heap at
- * address ADDR of file F. The object (or part) to remove
- * begins at byte OFFSET from the beginning of the heap and
- * continues for SIZE bytes.
- *
- * Once part of an object is removed, one must not attempt
- * to access that part. Removing the beginning of an object
- * results in the object OFFSET increasing by the amount
- * truncated. Removing the end of an object results in
- * object truncation. Removing the middle of an object results
- * in two separate objects, one at the original offset and
- * one at the first offset past the removed portion.
- *
- * If the heap address ADDR is the null pointer then
- * the address comes from the H5F_t global heap field.
- *
- * Return: Success: SUCCEED
- *
- * Failure: FAIL
- *
- * Programmer: Robb Matzke
- * matzke@llnl.gov
- * Jul 16 1997
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5H_remove(H5F_t *f, const haddr_t *addr, size_t offset, size_t size)
-{
- H5H_t *heap = NULL;
- H5H_free_t *fl = heap->freelist, *fl2 = NULL;
-#ifndef NDEBUG
- static int nmessages = 0;
-#endif
-
- FUNC_ENTER(H5H_remove, FAIL);
-
- /* check arguments */
- assert(f);
- if (!addr) addr = &(f->shared->smallobj_addr);
- assert(H5F_addr_defined(addr));
- assert(size > 0);
- assert (offset==H5H_ALIGN (offset));
- size = H5H_ALIGN (size);
-
- if (NULL == (heap = H5AC_find(f, H5AC_HEAP, addr, NULL, NULL))) {
- HRETURN_ERROR(H5E_HEAP, H5E_CANTLOAD, FAIL,
- "unable to load heap");
- }
- assert(offset < heap->mem_alloc);
- assert(offset + size <= heap->mem_alloc);
-
- heap->dirty += 1;
-
- /*
- * Check if this chunk can be prepended or appended to an already
- * free chunk. It might also fall between two chunks in such a way
- * that all three chunks can be combined into one.
- */
- while (fl) {
- if (offset + size == fl->offset) {
- fl->offset = offset;
- fl->size += size;
- assert (fl->offset==H5H_ALIGN (fl->offset));
- assert (fl->size==H5H_ALIGN (fl->size));
- fl2 = fl->next;
- while (fl2) {
- if (fl2->offset + fl2->size == fl->offset) {
- fl->offset = fl2->offset;
- fl->size += fl2->size;
- assert (fl->offset==H5H_ALIGN (fl->offset));
- assert (fl->size==H5H_ALIGN (fl->size));
- fl2 = H5H_remove_free(heap, fl2);
- HRETURN(SUCCEED);
- }
- }
- HRETURN(SUCCEED);
-
- } else if (fl->offset + fl->size == offset) {
- fl->size += size;
- fl2 = fl->next;
- assert (fl->size==H5H_ALIGN (fl->size));
- while (fl2) {
- if (fl->offset + fl->size == fl2->offset) {
- fl->size += fl2->size;
- assert (fl->size==H5H_ALIGN (fl->size));
- fl2 = H5H_remove_free(heap, fl2);
- HRETURN(SUCCEED);
- }
- }
- HRETURN(SUCCEED);
- }
- fl = fl->next;
- }
-
- /*
- * The amount which is being removed must be large enough to
- * hold the free list data. If not, the freed chunk is forever
- * lost.
- */
- if (size < H5H_SIZEOF_FREE(f)) {
-#ifndef NDEBUG
- fprintf(stderr, "H5H_remove: lost %lu bytes\n", (unsigned long) size);
- if (0 == nmessages++) {
- fprintf(stderr, "Messages from H5H_remove() will go away "
- "when assertions are turned off.\n");
- }
-#endif
- HRETURN(SUCCEED);
- }
- /*
- * Add an entry to the free list.
- */
- fl = H5MM_xmalloc(sizeof(H5H_free_t));
- fl->offset = offset;
- fl->size = size;
- assert (fl->offset==H5H_ALIGN (fl->offset));
- assert (fl->size==H5H_ALIGN (fl->size));
- fl->prev = NULL;
- fl->next = heap->freelist;
- if (heap->freelist) heap->freelist->prev = fl;
- heap->freelist = fl;
-
- FUNC_LEAVE(SUCCEED);
-}
-
-/*-------------------------------------------------------------------------
- * Function: H5H_debug
- *
- * Purpose: Prints debugging information about a heap.
- *
- * If the heap address ADDR is the null pointer then
- * the address comes from the H5F_t global heap field.
- *
- * Return: Success: SUCCEED
- *
- * Failure: FAIL
- *
- * Programmer: Robb Matzke
- * matzke@llnl.gov
- * Aug 1 1997
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5H_debug(H5F_t *f, const haddr_t *addr, FILE * stream, intn indent,
- intn fwidth)
-{
- H5H_t *h = NULL;
- int i, j, overlap;
- uint8 c;
- H5H_free_t *freelist = NULL;
- uint8 *marker = NULL;
- size_t amount_free = 0;
-
- FUNC_ENTER(H5H_debug, FAIL);
-
- /* check arguments */
- assert(f);
- if (!addr)
- addr = &(f->shared->smallobj_addr);
- assert(H5F_addr_defined(addr));
- assert(stream);
- assert(indent >= 0);
- assert(fwidth >= 0);
-
- if (NULL == (h = H5AC_find(f, H5AC_HEAP, addr, NULL, NULL))) {
- HRETURN_ERROR(H5E_HEAP, H5E_CANTLOAD, FAIL,
- "unable to load heap");
- }
- fprintf(stream, "%*sHeap...\n", indent, "");
- fprintf(stream, "%*s%-*s %d\n", indent, "", fwidth,
- "Dirty:",
- (int) (h->dirty));
- fprintf(stream, "%*s%-*s %lu\n", indent, "", fwidth,
- "Data bytes allocated on disk:",
- (unsigned long) (h->disk_alloc));
- fprintf(stream, "%*s%-*s %lu\n", indent, "", fwidth,
- "Data bytes allocated in core:",
- (unsigned long) (h->mem_alloc));
-
- /*
- * Traverse the free list and check that all free blocks fall within
- * the heap and that no two free blocks point to the same region of
- * the heap.
- */
- marker = H5MM_xcalloc(h->mem_alloc, 1);
- for (freelist = h->freelist; freelist; freelist = freelist->next) {
- fprintf(stream, "%*s%-*s %8lu, %8lu\n", indent, "", fwidth,
- "Free Block (offset,size):",
- (unsigned long) (freelist->offset),
- (unsigned long) (freelist->size));
- if (freelist->offset + freelist->size > h->mem_alloc) {
- fprintf(stream, "***THAT FREE BLOCK IS OUT OF BOUNDS!\n");
- } else {
- for (i = overlap = 0; i < freelist->size; i++) {
- if (marker[freelist->offset + i])
- overlap++;
- marker[freelist->offset + i] = 1;
- }
- if (overlap) {
- fprintf(stream, "***THAT FREE BLOCK OVERLAPPED A PREVIOUS ONE!\n");
- } else {
- amount_free += freelist->size;
- }
- }
- }
-
- if (h->mem_alloc) {
- fprintf(stream, "%*s%-*s %lu\n", indent, "", fwidth,
- "Percent of heap used:",
- (unsigned long) (100 * (h->mem_alloc - amount_free) /
- h->mem_alloc));
- }
- /*
- * Print the data in a VMS-style octal dump.
- */
- fprintf(stream, "%*sData follows (`__' indicates free region)...\n",
- indent, "");
- for (i = 0; i < h->disk_alloc; i += 16) {
- fprintf(stream, "%*s %8d: ", indent, "", i);
- for (j = 0; j < 16; j++) {
- if (i + j < h->disk_alloc) {
- if (marker[i + j]) {
- fprintf(stream, "__ ");
- } else {
- c = h->chunk[H5H_SIZEOF_HDR(f) + i + j];
- fprintf(stream, "%02x ", c);
- }
- } else {
- fprintf(stream, " ");
- }
- if (7 == j)
- HDfputc(' ', stream);
- }
-
- for (j = 0; j < 16; j++) {
- if (i + j < h->disk_alloc) {
- if (marker[i + j]) {
- HDfputc(' ', stream);
- } else {
- c = h->chunk[H5H_SIZEOF_HDR(f) + i + j];
- if (c > ' ' && c < '~')
- HDfputc(c, stream);
- else
- HDfputc('.', stream);
- }
- }
- }
-
- HDfputc('\n', stream);
- }
-
- H5MM_xfree(marker);
- FUNC_LEAVE(SUCCEED);
-}