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author | Gerd Heber <gheber@hdfgroup.org> | 2020-11-18 15:06:01 (GMT) |
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committer | GitHub <noreply@github.com> | 2020-11-18 15:06:01 (GMT) |
commit | 0a06b9a8690f6c968c036142fd1b1a83cbcd7617 (patch) | |
tree | 73e4b095ef9b1ea5f3ec9ad1a450bc193f8c75f8 /src/H5Ipublic.h | |
parent | a50d211755cb272b2e468144e7d892a4c90813c4 (diff) | |
download | hdf5-0a06b9a8690f6c968c036142fd1b1a83cbcd7617.zip hdf5-0a06b9a8690f6c968c036142fd1b1a83cbcd7617.tar.gz hdf5-0a06b9a8690f6c968c036142fd1b1a83cbcd7617.tar.bz2 |
First cut of the H5 public API documentation. (#80)
* First cut of the H5 public API documentation.
* Added H5Z "bonus track."
* Applied Quincey's patch.
* Added the missing patches from Quincey's original patch.
* H5PL (complete) and basic H5VL API documentation.
* Added H5I API docs.
* Added H5L API docs.
* First installment from Elena's H5T batch.
* Second installment of Elena's H5T batch.
* Final installment of Elena's H5T batch.
Diffstat (limited to 'src/H5Ipublic.h')
-rw-r--r-- | src/H5Ipublic.h | 619 |
1 files changed, 586 insertions, 33 deletions
diff --git a/src/H5Ipublic.h b/src/H5Ipublic.h index 697777c..a7c4961 100644 --- a/src/H5Ipublic.h +++ b/src/H5Ipublic.h @@ -21,37 +21,41 @@ /* Public headers needed by this file */ #include "H5public.h" -/* - * Library type values. Start with `1' instead of `0' because it makes the - * tracing output look better when hid_t values are large numbers. Change the - * TYPE_BITS in H5I.c if the MAXID gets larger than 32 (an assertion will - * fail otherwise). +/** + * Library type values. + * \internal Library type values. Start with `1' instead of `0' because it + * makes the tracing output look better when hid_t values are large + * numbers. Change the TYPE_BITS in H5I.c if the MAXID gets larger + * than 32 (an assertion will fail otherwise). * - * When adding types here, add a section to the 'misc19' test in test/tmisc.c - * to verify that the H5I{inc|dec|get}_ref() routines work correctly with it. + * When adding types here, add a section to the 'misc19' test in + * test/tmisc.c to verify that the H5I{inc|dec|get}_ref() routines + * work correctly with it. \endinternal */ typedef enum H5I_type_t { - H5I_UNINIT = (-2), /* uninitialized type */ - H5I_BADID = (-1), /* invalid Type */ - H5I_FILE = 1, /* type ID for File objects */ - H5I_GROUP, /* type ID for Group objects */ - H5I_DATATYPE, /* type ID for Datatype objects */ - H5I_DATASPACE, /* type ID for Dataspace objects */ - H5I_DATASET, /* type ID for Dataset objects */ - H5I_MAP, /* type ID for Map objects */ - H5I_ATTR, /* type ID for Attribute objects */ - H5I_VFL, /* type ID for virtual file layer */ - H5I_VOL, /* type ID for virtual object layer */ - H5I_GENPROP_CLS, /* type ID for generic property list classes */ - H5I_GENPROP_LST, /* type ID for generic property lists */ - H5I_ERROR_CLASS, /* type ID for error classes */ - H5I_ERROR_MSG, /* type ID for error messages */ - H5I_ERROR_STACK, /* type ID for error stacks */ - H5I_SPACE_SEL_ITER, /* type ID for dataspace selection iterator */ - H5I_NTYPES /* number of library types, MUST BE LAST! */ + H5I_UNINIT = (-2), /**< uninitialized type */ + H5I_BADID = (-1), /**< invalid Type */ + H5I_FILE = 1, /**< type ID for File objects */ + H5I_GROUP, /**< type ID for Group objects */ + H5I_DATATYPE, /**< type ID for Datatype objects */ + H5I_DATASPACE, /**< type ID for Dataspace objects */ + H5I_DATASET, /**< type ID for Dataset objects */ + H5I_MAP, /**< type ID for Map objects */ + H5I_ATTR, /**< type ID for Attribute objects */ + H5I_VFL, /**< type ID for virtual file layer */ + H5I_VOL, /**< type ID for virtual object layer */ + H5I_GENPROP_CLS, /**< type ID for generic property list classes */ + H5I_GENPROP_LST, /**< type ID for generic property lists */ + H5I_ERROR_CLASS, /**< type ID for error classes */ + H5I_ERROR_MSG, /**< type ID for error messages */ + H5I_ERROR_STACK, /**< type ID for error stacks */ + H5I_SPACE_SEL_ITER, /**< type ID for dataspace selection iterator */ + H5I_NTYPES /**< number of library types, MUST BE LAST! */ } H5I_type_t; -/* Type of atoms to return to users */ +/** + * Type of atoms to return to users + */ typedef int64_t hid_t; #define PRIdHID PRId64 @@ -59,13 +63,18 @@ typedef int64_t hid_t; #define PRIXHID PRIX64 #define PRIoHID PRIo64 -#define H5_SIZEOF_HID_T H5_SIZEOF_INT64_T +/** + * The size of identifiers + */ +#define H5_SIZEOF_HID_T H5_SIZEOF_INT64_T -/* An invalid object ID. This is also negative for error return. */ -#define H5I_INVALID_HID (-1) +/** + * An invalid object ID. This is also negative for error return. + */ +#define H5I_INVALID_HID (-1) -/* - * Function for freeing objects. This function will be called with an object +/** + * A function for freeing objects. This function will be called with an object * ID type number and a pointer to the object. The function should free the * object and return non-negative to indicate that the object * can be removed from the ID type. If the function returns negative @@ -73,11 +82,19 @@ typedef int64_t hid_t; */ typedef herr_t (*H5I_free_t)(void *); -/* Type of the function to compare objects & keys */ +/** + * The type of a function to compare objects & keys + */ +//! [H5I_search_func_t_snip] typedef int (*H5I_search_func_t)(void *obj, hid_t id, void *key); +//! [H5I_search_func_t_snip] -/* Type of the H5Iiterate callback function */ +/** + * The type of H5Iiterate() callback functions + */ +//! [H5I_iterate_func_t_snip] typedef herr_t (*H5I_iterate_func_t)(hid_t id, void *udata); +//! [H5I_iterate_func_t_snip] #ifdef __cplusplus extern "C" { @@ -85,25 +102,561 @@ extern "C" { /* Public API functions */ +/** + * \ingroup H5I + * + * \brief Registers an object under a type and returns an ID for it + * + * \param[in] type The identifier of the type of the new ID + * \param[in] object Pointer to object for which a new ID is created + * + * \return \hid_t{object} + * + * \details H5Iregister() allocates and returns a new ID for an object. + * + * \details The \p type parameter is the identifier for the ID type to which + * this new ID will belong. This identifier must have been created by + * a call to H5Iregister_type(). + * + * \details The \p object parameter is a pointer to the memory which the new ID + * will be a reference to. This pointer will be stored by the library + * and returned via a call to H5Iobject_verify(). + * + */ H5_DLL hid_t H5Iregister(H5I_type_t type, const void *object); +/** + * \ingroup H5I + * + * \brief Returns the object referenced by an ID + * + * \param[in] id ID to be dereferenced + * \param[in] id_type The identifier type + + * + * \return Pointer to the object referenced by \p id on success, NULL on failure. + * + * \details H5Iobject_verify() returns a pointer to the memory referenced by id + * after verifying that \p id is of type \p id_type. This function is + * analogous to dereferencing a pointer in C with type checking. + * + * \note H5Iobject_verify() does not change the ID it is called on in any way + * (as opposed to H5Iremove_verify(), which removes the ID from its + * type’s hash table). + * + * \see H5Iregister() + * + */ H5_DLL void * H5Iobject_verify(hid_t id, H5I_type_t id_type); +/** + * \ingroup H5I + * + * \brief Removes an ID from its type + * + * \param[in] id The ID to be removed from its type + * \param[in] id_type The identifier type + + * + * \return Returns a pointer to the memory referred to by \p id on success, + * NULL on failure. + * + * \details H5Iremove_verify() first ensures that \p id belongs to \p id_type. + * If so, it removes \p id from its type and returns the pointer + * to the memory it referred to. This pointer is the same pointer that + * was placed in storage by H5Iregister(). If id does not belong to + * \p id_type, then NULL is returned. + * + * The \p id parameter is the ID which is to be removed from its type. + * + * The \p type parameter is the identifier for the ID type which \p id + * is supposed to belong to. This identifier must have been created by + * a call to H5Iregister_type(). + * + * \note This function does NOT deallocate the memory that \p id refers to. + * The pointer returned by H5Iregister() must be deallocated by the user + * to avoid memory leaks. + * + */ H5_DLL void * H5Iremove_verify(hid_t id, H5I_type_t id_type); +/** + * \ingroup H5I + * + * \brief Retrieves the type of an object + * + * \obj_id{id} + * + * \return Returns the object type if successful; otherwise #H5I_BADID. + * + * \details H5Iget_type() retrieves the type of the object identified by + * \p id. + * + * Valid types returned by the function are: + * \id_types + * + * If no valid type can be determined or the identifier submitted is + * invalid, the function returns #H5I_BADID. + * + * This function is of particular use in determining the type of + * object closing function (H5Dclose(), H5Gclose(), etc.) to call + * after a call to H5Rdereference(). + * + * \note Note that this function returns only the type of object that \p id + * would identify if it were valid; it does not determine whether \p id + * is valid identifier. Validity can be determined with a call to + * H5Iis_valid(). + * + */ H5_DLL H5I_type_t H5Iget_type(hid_t id); +/** + * \ingroup H5I + * + * \brief Retrieves an identifier for the file containing the specified object + * + * \obj_id{id} + * + * \return \hid_t{file} + * + * \details H5Iget_file_id() returns the identifier of the file associated with + * the object referenced by \p id. + * + * \note Note that the HDF5 library permits an application to close a file + * while objects within the file remain open. If the file containing the + * object \p id is still open, H5Iget_file_id() will retrieve the + * existing file identifier. If there is no existing file identifier for + * the file, i.e., the file has been closed, H5Iget_file_id() will reopen + * the file and return a new file identifier. In either case, the file + * identifier must eventually be released using H5Fclose(). + * + * \since 1.6.3 + * + */ H5_DLL hid_t H5Iget_file_id(hid_t id); +/** + * \ingroup H5I + * + * \brief Retrieves a name of an object based on the object identifier + * + * \obj_id{id} + * \param[out] name A buffer for thename associated with the identifier + * \param[in] size The size of the \p name buffer; usually the size of + * the name in bytes plus 1 for a NULL terminator + * + * \return ssize_t + * + * \details H5Iget_name() retrieves a name for the object identified by \p id. + * + * \details Up to size characters of the name are returned in \p name; + * additional characters, if any, are not returned to the user + * application. + * + * If the length of the name, which determines the required value of + * \p size, is unknown, a preliminary H5Iget_name() call can be made. + * The return value of this call will be the size in bytes of the + * object name. That value, plus 1 for a NULL terminator, is then + * assigned to size for a second H5Iget_name() call, which will + * retrieve the actual name. + * + * If the object identified by \p id is an attribute, as determined + * via H5Iget_type(), H5Iget_name() retrieves the name of the object + * to which that attribute is attached. To retrieve the name of the + * attribute itself, use H5Aget_name(). + * + * If there is no name associated with the object identifier or if the + * name is NULL, H5Iget_name() returns 0 (zero). + * + * \note Note that an object in an HDF5 file may have multiple paths if there + * are multiple links pointing to it. This function may return any one of + * these paths. When possible, H5Iget_name() returns the path with which + * the object was opened. + * + * \since 1.6.0 + * + */ H5_DLL ssize_t H5Iget_name(hid_t id, char *name /*out*/, size_t size); +/** + * \ingroup H5I + * + * \brief Increments the reference count for an object + * + * \obj_id{id} + * + * \return Returns a non-negative reference count of the object ID after + * incrementing it if successful; otherwise a negative value is + * returned. + * + * \details H5Iinc_ref() increments the reference count of the object + * identified by \p id. + * + * The reference count for an object ID is attached to the information + * about an object in memory and has no relation to the number of + * links to an object on disk. + * + * The reference count for a newly created object will be 1. Reference + * counts for objects may be explicitly modified with this function or + * with H5Idec_ref(). When an object ID's reference count reaches + * zero, the object will be closed. Calling an object ID's \c close + * function decrements the reference count for the ID which normally + * closes the object, but if the reference count for the ID has been + * incremented with this function, the object will only be closed when + * the reference count reaches zero with further calls to H5Idec_ref() + * or the object ID's \c close function. + * + * If the object ID was created by a collective parallel call (such as + * H5Dcreate(), H5Gopen(), etc.), the reference count should be + * modified by all the processes which have copies of the ID. + * Generally this means that group, dataset, attribute, file and named + * datatype IDs should be modified by all the processes and that all + * other types of IDs are safe to modify by individual processes. + * + * This function is of particular value when an application is + * maintaining multiple copies of an object ID. The object ID can be + * incremented when a copy is made. Each copy of the ID can then be + * safely closed or decremented and the HDF5 object will be closed + * when the reference count for that that object drops to zero. + * + * \since 1.6.2 + * + */ H5_DLL int H5Iinc_ref(hid_t id); +/** + * \ingroup H5I + * + * \brief Decrements the reference count for an object + * + * \obj_id{id} + * + * \return Returns a non-negative reference count of the object ID after + * decrementing it, if successful; otherwise a negative value is + * returned. + * + * \details H5Idec_ref() decrements the reference count of the object + * identified by \p id. + * + * The reference count for an object ID is attached to the information + * about an object in memory and has no relation to the number of + * links to an object on disk. + * + * The reference count for a newly created object will be 1. Reference + * counts for objects may be explicitly modified with this function or + * with H5Iinc_ref(). When an object identifier’s reference count + * reaches zero, the object will be closed. Calling an object + * identifier’s \c close function decrements the reference count for + * the identifier which normally closes the object, but if the + * reference count for the identifier has been incremented with + * H5Iinc_ref(), the object will only be closed when the reference + * count reaches zero with further calls to this function or the + * object identifier’s \c close function. + * + * If the object ID was created by a collective parallel call (such as + * H5Dcreate(), H5Gopen(), etc.), the reference count should be + * modified by all the processes which have copies of the ID. + * Generally this means that group, dataset, attribute, file and named + * datatype IDs should be modified by all the processes and that all + * other types of IDs are safe to modify by individual processes. + * + * This function is of particular value when an application is + * maintaining multiple copies of an object ID. The object ID can be + * incremented when a copy is made. Each copy of the ID can then be + * safely closed or decremented and the HDF5 object will be closed + * when the reference count for that that object drops to zero. + * + * \since 1.6.2 + * + */ H5_DLL int H5Idec_ref(hid_t id); +/** + * \ingroup H5I + * + * \brief Retrieves the reference count for an object + * + * \obj_id{id} + * + * \return Returns a non-negative current reference count of the object + * identifier if successful; otherwise a negative value is returned. + * + * \details H5Iget_ref() retrieves the reference count of the object identified + * by \p id. + * + * The reference count for an object identifier is attached to the + * information about an object in memory and has no relation to the + * number of links to an object on disk. + * + * The function H5Iis_valid() is used to determine whether a specific + * object identifier is valid. + * + * \since 1.6.2 + * + */ H5_DLL int H5Iget_ref(hid_t id); +/** + * \ingroup H5I + * + * \brief Creates and returns a new ID type + * + * \param[in] hash_size Minimum hash table size (in entries) used to store IDs + * for the new type + * \param[in] reserved Number of reserved IDs for the new type + * \param[in] free_func Function used to deallocate space for a single ID + * + * \return Returns the type identifier on success, negative on failure. + * + * \details H5Iregister_type() allocates space for a new ID type and returns an + * identifier for it. + * + * The \p hash_size parameter indicates the minimum size of the hash + * table used to store IDs in the new type. + * + * The \p reserved parameter indicates the number of IDs in this new + * type to be reserved. Reserved IDs are valid IDs which are not + * associated with any storage within the library. + * + * The \p free_func parameter is a function pointer to a function + * which returns an herr_t and accepts a \c void*. The purpose of this + * function is to deallocate memory for a single ID. It will be called + * by H5Iclear_type() and H5Idestroy_type() on each ID. This function + * is NOT called by H5Iremove_verify(). The \c void* will be the same + * pointer which was passed in to the H5Iregister() function. The \p + * free_func function should return 0 on success and -1 on failure. + * + */ H5_DLL H5I_type_t H5Iregister_type(size_t hash_size, unsigned reserved, H5I_free_t free_func); +/** + * \ingroup H5I + * + * \brief Deletes all identifiers of the given type + * + * \param[in] type Identifier of identifier type which is to be cleared of identifiers + * \param[in] force Whether or not to force deletion of all identifiers + * + * \return \herr_t + * + * \details H5Iclear_type() deletes all identifiers of the type identified by + * the argument \p type. + * + * The identifier type's free function is first called on all of these + * identifiers to free their memory, then they are removed from the + * type. + * + * If the \p force flag is set to false, only those identifiers whose + * reference counts are equal to 1 will be deleted, and all other + * identifiers will be entirely unchanged. If the force flag is true, + * all identifiers of this type will be deleted. + * + */ H5_DLL herr_t H5Iclear_type(H5I_type_t type, hbool_t force); +/** + * \ingroup H5I + * + * \brief Removes an identifier type and all identifiers within that type + * + * \param[in] type Identifier of identifier type which is to be destroyed + * + * \return \herr_t + * + * \details H5Idestroy_type deletes an entire identifier type \p type. All + * identifiers of this type are destroyed and no new identifiers of + * this type can be registered. + * + * The type’s free function is called on all of the identifiers which + * are deleted by this function, freeing their memory. In addition, + * all memory used by this type’s hash table is freed. + * + * Since the H5I_type_t values of destroyed identifier types are + * reused when new types are registered, it is a good idea to set the + * variable holding the value of the destroyed type to #H5I_UNINIT. + * + */ H5_DLL herr_t H5Idestroy_type(H5I_type_t type); +/** + * \ingroup H5I + * + * \brief Increments the reference count on an ID type + * + * \param[in] type The identifier of the type whose reference count is to be incremented + * + * \return Returns the current reference count on success, negative on failure. + * + * \details H5Iinc_type_ref() increments the reference count on an ID type. The + * reference count is used by the library to indicate when an ID type + * can be destroyed. + * + * The type parameter is the identifier for the ID type whose + * reference count is to be incremented. This identifier must have + * been created by a call to H5Iregister_type(). + * + */ H5_DLL int H5Iinc_type_ref(H5I_type_t type); +/** + * \ingroup H5I + * + * \brief Decrements the reference count on an identifier type + * + * \param[in] type The identifier of the type whose reference count is to be decremented + * + * \return Returns the current reference count on success, negative on failure. + * + * \details H5Idec_type_ref() decrements the reference count on an identifier + * type. The reference count is used by the library to indicate when + * an identifier type can be destroyed. If the reference count reaches + * zero, this function will destroy it. + * + * The type parameter is the identifier for the identifier type whose + * reference count is to be decremented. This identifier must have + * been created by a call to H5Iregister_type(). + * + */ H5_DLL int H5Idec_type_ref(H5I_type_t type); +/** + * \ingroup H5I + * + * \brief Retrieves the reference count on an ID type + * + * \param[in] type The identifier of the type whose reference count is to be retieved + * + * \return Returns the current reference count on success, negative on failure. + * + * \details H5Iget_type_ref() retrieves the reference count on an ID type. The + * reference count is used by the library to indicate when an ID type + * can be destroyed. + * + * The type parameter is the identifier for the ID type whose + * reference count is to be retrieved. This identifier must have been + * created by a call to H5Iregister_type(). + * + */ H5_DLL int H5Iget_type_ref(H5I_type_t type); +/** + * \ingroup H5I + * + * \brief Finds the memory referred to by an ID within the given ID type such + * that some criterion is satisfied + * + * \param[in] type The identifier of the type to be searched + * \param[in] func The function defining the search criteria + * \param[in] key A key for the search function + * + * \return Returns a pointer to the object which satisfies the search function + * on success, NULL on failure. + * + * \details H5Isearch() searches through a given ID type to find an object that + * satisfies the criteria defined by \p func. If such an object is + * found, the pointer to the memory containing this object is + * returned. Otherwise, NULL is returned. To do this, \p func is + * called on every member of type \p type. The first member to satisfy + * \p func is returned. + * + * The \p type parameter is the identifier for the ID type which is to + * be searched. This identifier must have been created by a call to + * H5Iregister_type(). + * + * The parameter \p func is a function pointer to a function which + * takes three parameters. The first parameter is a \c void* and will + * be a pointer to the object to be tested. This is the same object + * that was placed in storage using H5Iregister(). The second + * parameter is a hid_t and is the ID of the object to be tested. The + * last parameter is a \c void*. This is the \p key parameter and can + * be used however the user finds helpful, or it can be ignored if it + * is not needed. \p func returns 0 if the object it is testing does + * not pass its criteria. A non-zero value should be returned if the + * object does pass its criteria. H5I_search_func_t is defined in + * H5Ipublic.h and is shown below. + * \snippet this H5I_search_func_t_snip + * The \p key parameter will be passed to the search function as a + * parameter. It can be used to further define the search at run-time. + * + */ H5_DLL void * H5Isearch(H5I_type_t type, H5I_search_func_t func, void *key); +/** + * \ingroup H5I + * + * \brief Calls a callback for each member of the identifier type specified + * + * \param[in] type The identifier type + * \param[in] op The callback function + * \param[in,out] op_data The data for the callback function + * + * \return The last value returned by \p op + * + * \details H5Iiterate() calls the callback function \p op for each member of + * the identifier type \p type. The callback function type for \p op, + * H5I_iterate_func_t, is defined in H5Ipublic.h as: + * \snippet this H5I_iterate_func_t_snip + * \p op takes as parameters the identifier and a pass through of + * \p op_data, and returns an herr_t. + * + * A positive return from op will cause the iteration to stop and + * H5Iiterate() will return the value returned by \p op. A negative + * return from \p op will cause the iteration to stop and H5Iiterate() + * will return failure. A zero return from \p op will allow iteration + * to continue, as long as there are other identifiers remaining in + * type. + * + * \since 1.12.0 + * + */ H5_DLL herr_t H5Iiterate(H5I_type_t type, H5I_iterate_func_t op, void *op_data); +/** + * \ingroup H5I + * + * \brief Returns the number of identifiers in a given identifier type + * + * \param[in] type The identifier type + * \param[out] num_members Number of identifiers of the specified identifier type + * + * \return \herr_t + * + * \details H5Inmembers() returns the number of identifiers of the identifier + * type specified in \p type. + * + * The number of identifiers is returned in \p num_members. If no + * identifiers of this type have been registered, the type does not + * exist, or it has been destroyed, \p num_members is returned with + * the value 0. + * + */ H5_DLL herr_t H5Inmembers(H5I_type_t type, hsize_t *num_members); +/** + * \ingroup H5I + * + * \brief Determines whether an identifier type is registered + * + * \param[in] type Identifier type + * + * \return \htri_t + * + * \details H5Itype_exists() determines whether the given identifier type, + * \p type, is registered with the library. + * + * \since 1.8.0 + * + */ H5_DLL htri_t H5Itype_exists(H5I_type_t type); +/** + * \ingroup H5I + * + * \brief Determines whether an identifier is valid + * + * \obj_id{id} + * + * \return \htri_t + * + * \details H5Iis_valid() determines whether the identifier \p id is valid. + * + * \details Valid identifiers are those that have been obtained by an + * application and can still be used to access the original target. + * Examples of invalid identifiers include: + * \li Out of range values: negative, for example + * \li Previously-valid identifiers that have been released: + * for example, a dataset identifier for which the dataset has + * been closed + * + * H5Iis_valid() can be used with any type of identifier: object + * identifier, property list identifier, attribute identifier, error + * message identifier, etc. When necessary, a call to H5Iget_type() + * can determine the type of the object that \p id identifies. + * + * \since 1.8.3 + * + */ H5_DLL htri_t H5Iis_valid(hid_t id); #ifdef __cplusplus |