Merge pull request #1111 in HDFFV/hdf5 from hdf5_1_10.sync to hdf5_1_10

* commit '57f64b92d19fed2879ee9bafe1d29bfac865d54c': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...

1 files changed, 332 insertions, 0 deletions

diff --git a/src/H5Odeprec.c b/src/H5Odeprec.c
new file mode 100644
index 0000000..876579d
--- /dev/null
+++ b/src/H5Odeprec.c
@@ -0,0 +1,332 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group.                                               *
+ * Copyright by the Board of Trustees of the University of Illinois.         *
+ * All rights reserved.                                                      *
+ *                                                                           *
+ * This file is part of HDF5.  The full HDF5 copyright notice, including     *
+ * terms governing use, modification, and redistribution, is contained in    *
+ * the COPYING file, which can be found at the root of the source code       *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * If you do not have access to either file, you may request a copy from     *
+ * help@hdfgroup.org.                                                        *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Purpose:	Deprecated functions from the H5O interface.  These
+ *              functions are here for compatibility purposes and may be
+ *              removed in the future.  Applications should switch to the
+ *              newer APIs.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+/****************/
+/* Module Setup */
+/****************/
+
+#include "H5Omodule.h"          /* This source code file is part of the H5O module */
+
+
+/***********/
+/* Headers */
+/***********/
+#include "H5private.h"      /* Generic Functions    */
+#include "H5Eprivate.h"     /* Error handling       */
+#include "H5Opkg.h"         /* Object headers       */
+
+
+/****************/
+/* Local Macros */
+/****************/
+
+
+/******************/
+/* Local Typedefs */
+/******************/
+
+
+/********************/
+/* Package Typedefs */
+/********************/
+
+
+/********************/
+/* Local Prototypes */
+/********************/
+
+
+/*********************/
+/* Package Variables */
+/*********************/
+
+
+/*****************************/
+/* Library Private Variables */
+/*****************************/
+
+
+/*******************/
+/* Local Variables */
+/*******************/
+
+
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+
+/*-------------------------------------------------------------------------
+ * Function:    H5Oget_info1
+ *
+ * Purpose:     Retrieve information about an object.
+ *
+ * Return:      Success:    Non-negative
+ *              Failure:    Negative
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5Oget_info1(hid_t loc_id, H5O_info_t *oinfo)
+{
+    H5G_loc_t   loc;                    /* Location of group */
+    herr_t      ret_value = SUCCEED;    /* Return value */
+
+    FUNC_ENTER_API(FAIL)
+    H5TRACE2("e", "i*x", loc_id, oinfo);
+
+    /* Check args */
+    if(H5G_loc(loc_id, &loc) < 0)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
+    if(!oinfo)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct")
+
+    /* Retrieve the object's information */
+    if(H5O__get_info_by_name(&loc, ".", oinfo/*out*/, H5O_INFO_ALL) < 0)
+        HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object")
+
+done:
+    FUNC_LEAVE_API(ret_value)
+} /* end H5Oget_info1() */
+
+
+/*-------------------------------------------------------------------------
+ * Function:    H5Oget_info_by_name1
+ *
+ * Purpose:     Retrieve information about an object.
+ *
+ * Return:      Success:    Non-negative
+ *              Failure:    Negative
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5Oget_info_by_name1(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t lapl_id)
+{
+    H5G_loc_t   loc;                    /* Location of group */
+    herr_t      ret_value = SUCCEED;    /* Return value */
+
+    FUNC_ENTER_API(FAIL)
+    H5TRACE4("e", "i*s*xi", loc_id, name, oinfo, lapl_id);
+
+    /* Check args */
+    if(H5G_loc(loc_id, &loc) < 0)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
+    if(!name || !*name)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name")
+    if(!oinfo)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct")
+
+     /* Verify access property list and set up collective metadata if appropriate */
+    if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0)
+        HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info")
+
+    /* Retrieve the object's information */
+    if(H5O__get_info_by_name(&loc, name, oinfo/*out*/, H5O_INFO_ALL) < 0)
+        HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object: '%s'", name)
+
+done:
+    FUNC_LEAVE_API(ret_value)
+} /* end H5Oget_info_by_name1() */
+
+
+/*-------------------------------------------------------------------------
+ * Function:    H5Oget_info_by_idx1
+ *
+ * Purpose:     Retrieve information about an object, according to the order
+ *              of an index.
+ *
+ * Return:      Success:    Non-negative
+ *              Failure:    Negative
+ *
+ * Programmer:  Quincey Koziol
+ *              November 26 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5Oget_info_by_idx1(hid_t loc_id, const char *group_name, H5_index_t idx_type,
+    H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, hid_t lapl_id)
+{
+    H5G_loc_t   loc;                    /* Location of group */
+    H5G_loc_t   obj_loc;                /* Location used to open group */
+    H5G_name_t  obj_path;               /* Opened object group hier. path */
+    H5O_loc_t   obj_oloc;               /* Opened object object location */
+    hbool_t     loc_found = FALSE;      /* Entry at 'name' found */
+    herr_t      ret_value = SUCCEED;    /* Return value */
+
+    FUNC_ENTER_API(FAIL)
+    H5TRACE7("e", "i*sIiIoh*xi", loc_id, group_name, idx_type, order, n, oinfo,
+             lapl_id);
+
+    /* Check args */
+    if(H5G_loc(loc_id, &loc) < 0)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
+    if(!group_name || !*group_name)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified")
+    if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified")
+    if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified")
+    if(!oinfo)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct")
+
+    /* Verify access property list and set up collective metadata if appropriate */
+    if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0)
+        HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info")
+
+    /* Retrieve the object's information */
+    if(H5O__get_info_by_idx(&loc, group_name, idx_type, order, n, oinfo, H5O_INFO_ALL) < 0)
+        HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object")
+
+done:
+    /* Release the object location */
+    if(loc_found && H5G_loc_free(&obj_loc) < 0)
+        HDONE_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "can't free location")
+
+    FUNC_LEAVE_API(ret_value)
+} /* end H5Oget_info_by_idx1() */
+
+
+/*-------------------------------------------------------------------------
+ * Function:	H5Ovisit1
+ *
+ * Purpose:     Recursively visit an object and all the objects reachable
+ *              from it.  If the starting object is a group, all the objects
+ *              linked to from that group will be visited.  Links within
+ *              each group are visited according to the order within the
+ *              specified index (unless the specified index does not exist for
+ *              a particular group, then the "name" index is used).
+ *
+ *              NOTE: Soft links and user-defined links are ignored during
+ *              this operation.
+ *
+ *              NOTE: Each _object_ reachable from the initial group will only
+ *              be visited once.  If multiple hard links point to the same
+ *              object, the first link to the object's path (according to the
+ *              iteration index and iteration order given) will be used to in
+ *              the callback about the object.
+ *
+ * Return:      Success:    The return value of the first operator that
+ *				returns non-zero, or zero if all members were
+ *				processed with no operator returning non-zero.
+ *
+ *              Failure:    Negative if something goes wrong within the
+ *				library, or the negative value returned by one
+ *				of the operators.
+ *
+ * Programmer:	Quincey Koziol
+ *              November 25 2007
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5Ovisit1(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order,
+    H5O_iterate_t op, void *op_data)
+{
+    herr_t      ret_value;              /* Return value */
+
+    FUNC_ENTER_API(FAIL)
+    H5TRACE5("e", "iIiIox*x", obj_id, idx_type, order, op, op_data);
+
+    /* Check args */
+    if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified")
+    if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified")
+    if(!op)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified")
+
+    /* Call internal object visitation routine */
+    if((ret_value = H5O__visit(obj_id, ".", idx_type, order, op, op_data, H5O_INFO_ALL)) < 0)
+        HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "object visitation failed")
+
+done:
+    FUNC_LEAVE_API(ret_value)
+} /* end H5Ovisit1() */
+
+
+/*-------------------------------------------------------------------------
+ * Function:    H5Ovisit_by_name1
+ *
+ * Purpose:     Recursively visit an object and all the objects reachable
+ *              from it.  If the starting object is a group, all the objects
+ *              linked to from that group will be visited.  Links within
+ *              each group are visited according to the order within the
+ *              specified index (unless the specified index does not exist for
+ *              a particular group, then the "name" index is used).
+ *
+ *              NOTE: Soft links and user-defined links are ignored during
+ *              this operation.
+ *
+ *              NOTE: Each _object_ reachable from the initial group will only
+ *              be visited once.  If multiple hard links point to the same
+ *              object, the first link to the object's path (according to the
+ *              iteration index and iteration order given) will be used to in
+ *              the callback about the object.
+ *
+ * Return:      Success:    The return value of the first operator that
+ *				returns non-zero, or zero if all members were
+ *				processed with no operator returning non-zero.
+ *
+ *              Failure:    Negative if something goes wrong within the
+ *				library, or the negative value returned by one
+ *				of the operators.
+ *
+ * Programmer:	Quincey Koziol
+ *              November 24 2007
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5Ovisit_by_name1(hid_t loc_id, const char *obj_name, H5_index_t idx_type,
+    H5_iter_order_t order, H5O_iterate_t op, void *op_data, hid_t lapl_id)
+{
+    herr_t      ret_value;              /* Return value */
+
+    FUNC_ENTER_API(FAIL)
+    H5TRACE7("e", "i*sIiIox*xi", loc_id, obj_name, idx_type, order, op, op_data,
+             lapl_id);
+
+    /* Check args */
+    if(!obj_name || !*obj_name)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name")
+    if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified")
+    if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified")
+    if(!op)
+        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified")
+
+    /* Verify access property list and set up collective metadata if appropriate */
+    if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0)
+        HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info")
+
+    /* Call internal object visitation routine */
+    if((ret_value = H5O__visit(loc_id, obj_name, idx_type, order, op, op_data, H5O_INFO_ALL)) < 0)
+        HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "object visitation failed")
+
+done:
+    FUNC_LEAVE_API(ret_value)
+} /* end H5Ovisit_by_name1() */
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+