[svn-r1204] Changes since 19990415

----------------------

./config/depend.in
	Fixed automatic dependencies. We were storing dependencies for
	*.o files instead of *.lo files after shared libraries were
	added.

./config/gnu-flags
./config/linux-gnulibc1
	Moved `-march=pentiumpro -mcpu=pentiumpro -malign-double' from
	the linux file to this file and caused it to depend on the CPU
	name.  This fixes one of Elena's bugs.

./src/H5B.c
./src/H5Bprivate.h
./src/H5D.c
./src/H5Dprivate.h
./src/H5Dpublic.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fistore.c
./src/H5Fmpio.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Gnode.c
./src/H5P.c
./src/H5RA.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Smpio.c
./src/H5Spoint.c
./src/H5Sprivate.h
./src/H5Tpublic.h
./test/istore.c
	Added an H5Dget_storage_size() function that reports the
	amount of storage allocated for raw data in a dataset.

	Changed H5D_xfer_* to H5F_xfer_* because these properties are
	more general than datasets. This also allows some of the
	lower-level I/O functions to get this information easier.

./src/H5S.c
./src/H5Sall.c
	Added two new functions H5S_all_read() and H5S_all_write()
	which are optimizations that copy data directly between file
	and memory without having to go through the scatter gather
	step.  This knocks quite a bit of time off the I/O and
	reading/writing entire datasets is a fairly common operation.

./tools/h5ls.c
	Reports the logical size of data, the allocated size of data,
	and the percent utilization.

./MANIFEST
	Removed old pablo files, added new files. Snapshots should now
	start to work again.

./src/H5D.c
./src/H5Fmpio.c
	Removed two warnings signed vs. unsigned comparisons and check
	for overflow.

1 files changed, 13 insertions, 13 deletions

diff --git a/src/H5P.c b/src/H5P.c
index 99bc563..2bbc54c 100644
--- a/src/H5P.c
+++ b/src/H5P.c
@@ -182,11 +182,11 @@ H5Pcreate(H5P_class_t type)
 	break;
 
     case H5P_DATASET_XFER:
-	if (NULL==(plist = H5MM_malloc(sizeof(H5D_xfer_t)))) {
+	if (NULL==(plist = H5MM_malloc(sizeof(H5F_xfer_t)))) {
 	    HRETURN_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL,
 			   "memory allocation failed");
 	}
-	HDmemcpy(plist, &H5D_xfer_dflt, sizeof(H5D_xfer_t));
+	HDmemcpy(plist, &H5F_xfer_dflt, sizeof(H5F_xfer_t));
 	break;
 
     case H5P_MOUNT:
@@ -1979,7 +1979,7 @@ H5Pget_cache(hid_t plist_id, int *mdc_nelmts,
 herr_t
 H5Pset_buffer(hid_t plist_id, size_t size, void *tconv, void *bkg)
 {
-    H5D_xfer_t		*plist = NULL;
+    H5F_xfer_t		*plist = NULL;
     
     FUNC_ENTER (H5Pset_buffer, FAIL);
     H5TRACE4("e","izxx",plist_id,size,tconv,bkg);
@@ -2023,7 +2023,7 @@ H5Pset_buffer(hid_t plist_id, size_t size, void *tconv, void *bkg)
 size_t
 H5Pget_buffer(hid_t plist_id, void **tconv/*out*/, void **bkg/*out*/)
 {
-    H5D_xfer_t		*plist = NULL;
+    H5F_xfer_t		*plist = NULL;
     
     FUNC_ENTER (H5Pget_buffer, 0);
     H5TRACE3("z","ixx",plist_id,tconv,bkg);
@@ -2069,7 +2069,7 @@ H5Pget_buffer(hid_t plist_id, void **tconv/*out*/, void **bkg/*out*/)
 herr_t
 H5Pset_hyper_cache(hid_t plist_id, unsigned cache, unsigned limit)
 {
-    H5D_xfer_t		*plist = NULL;
+    H5F_xfer_t		*plist = NULL;
     
     FUNC_ENTER (H5Pset_hyper_cache, FAIL);
     H5TRACE3("e","iIuIu",plist_id,cache,limit);
@@ -2107,7 +2107,7 @@ herr_t
 H5Pget_hyper_cache(hid_t plist_id, unsigned *cache/*out*/,
 		   unsigned *limit/*out*/)
 {
-    H5D_xfer_t		*plist = NULL;
+    H5F_xfer_t		*plist = NULL;
     
     FUNC_ENTER (H5Pget_hyper_cache, 0);
     H5TRACE3("e","ixx",plist_id,cache,limit);
@@ -2148,7 +2148,7 @@ H5Pget_hyper_cache(hid_t plist_id, unsigned *cache/*out*/,
 herr_t
 H5Pset_preserve(hid_t plist_id, hbool_t status)
 {
-    H5D_xfer_t		*plist = NULL;
+    H5F_xfer_t		*plist = NULL;
     
     FUNC_ENTER (H5Pset_preserve, FAIL);
     H5TRACE2("e","ib",plist_id,status);
@@ -2186,7 +2186,7 @@ H5Pset_preserve(hid_t plist_id, hbool_t status)
 int
 H5Pget_preserve(hid_t plist_id)
 {
-    H5D_xfer_t		*plist = NULL;
+    H5F_xfer_t		*plist = NULL;
     
     FUNC_ENTER (H5Pset_preserve, FAIL);
     H5TRACE1("Is","i",plist_id);
@@ -2497,7 +2497,7 @@ herr_t
 H5Pget_btree_ratios(hid_t plist_id, double *left/*out*/, double *middle/*out*/,
 		    double *right/*out*/)
 {
-    H5D_xfer_t		*plist = NULL;
+    H5F_xfer_t		*plist = NULL;
 
     FUNC_ENTER(H5Pget_btree_ratios, FAIL);
     H5TRACE4("e","ixxx",plist_id,left,middle,right);
@@ -2544,7 +2544,7 @@ herr_t
 H5Pset_btree_ratios(hid_t plist_id, double left, double middle,
 		    double right)
 {
-    H5D_xfer_t		*plist = NULL;
+    H5F_xfer_t		*plist = NULL;
 
     FUNC_ENTER(H5Pget_btree_ratios, FAIL);
     H5TRACE4("e","iddd",plist_id,left,middle,right);
@@ -2903,7 +2903,7 @@ H5Pget_mpi(hid_t plist_id, MPI_Comm *comm, MPI_Info *info)
 herr_t
 H5Pset_xfer(hid_t plist_id, H5D_transfer_t data_xfer_mode)
 {
-    H5D_xfer_t		*plist = NULL;
+    H5F_xfer_t		*plist = NULL;
 
     FUNC_ENTER(H5Pset_xfer, FAIL);
     H5TRACE2("e","iDt",plist_id,data_xfer_mode);
@@ -2951,7 +2951,7 @@ H5Pset_xfer(hid_t plist_id, H5D_transfer_t data_xfer_mode)
 herr_t
 H5Pget_xfer(hid_t plist_id, H5D_transfer_t *data_xfer_mode)
 {
-    H5D_xfer_t		*plist = NULL;
+    H5F_xfer_t		*plist = NULL;
 
     FUNC_ENTER (H5Pget_xfer, FAIL);
     H5TRACE2("e","i*Dt",plist_id,data_xfer_mode);
@@ -3151,7 +3151,7 @@ H5P_copy (H5P_class_t type, const void *src)
 	break;
 
     case H5P_DATASET_XFER:
-	size = sizeof(H5D_xfer_t);
+	size = sizeof(H5F_xfer_t);
 	break;
 
     case H5P_MOUNT: