Squashed commit of the following:

commit ff7a9a34de2fcd78f5d32a1532f3d0e224b20d94
Author: Kimmy Mu <kmu@hdfgroup.org>
Date:   Wed Jan 29 14:12:18 2020 -0600

    Merge pull request #2324 in HDFFV/hdf5 from ~KMU/hdf5:hdf5_1_12 to hdf5_1_12

    * commit '781fa57f6ee816e037dd12fff02d37ff7ec9c2b1':
      pick up missing piece from merge
      Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
      remove redundent definition
      Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
      Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
      Merge pull request #2315 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop
      missing prototype warning
      prototype issue
      Merge pull request #2306 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop
      Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to develop
      Merge pull request #2291 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/uninitialized to develop
      Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to develop
      Merge pull request #2292 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/prototype to develop
      Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop

commit 9f3d808c05d2a3b308f32c958c6671fcac0a432c
Author: David Young <dyoung@hdfgroup.org>
Date:   Wed Jan 29 11:43:55 2020 -0600

    testpar/t_2Gio.c: Fix a typo that I think was introduced by a
            previous warnings PR.  An array element was assigned to
            itself---shape[2]Â =Â shape[2];---instead of being assigned to
            chunk[2].

    fortran/src/H5Pf.c: move conditional compilation controlled by
            H5_NO_DEPRECATED_SYMBOLS outside of a function for readability.

    fortran/src/H5match_types.c: put a variable's declaration under the same
            conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its
            use.

    For now, skip compilation of some unused debug dump routines in the JNI.
    While I'm in the JNI, delete a set-but-unused variable.

    src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS
            so that it's not declared but unused or vice versa.

    test/cache_common.h: add an #include in to get some symbols we need to
            avoid implicit declaration warnings.

    test/dsets.c: use a more conventional conditional-compilation syntax.

    test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized
            variables before use.

    test/vfd.c: pass the expected type of `void **` to posix_memalign(3)
            instead of `int **`.

    testpar/t_bigio.c: explicitly compare with 0 instead of using ! when
            "equal to 0?" is the question not "is false?"  Repair some
            indentation while I'm here.

    testpar/testpar.h: repair misaligned line-continuation backslashes in a
            macro that probably should be a function so that we don't have
            to fiddle with the line continuation to begin with.

    tools/src/h5repack/h5repack_main.c: fix some compiler fussing about
            enums.

    tools/test/perform/pio_engine.c: the compiler fusses if you cast a
            function call returning double directly to off_t.  It's ok if
            you cast a variable that's a double to off_t, however.  Write
            and use a new function, sqrto(), to avoid the cast warnings.

commit 43a4b80b21c0329fbc1f9a0e2854795189f0bb50
Author: David Young <dyoung@hdfgroup.org>
Date:   Wed Jan 29 10:47:30 2020 -0600

    Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.

    Reduce gratuitous casts---e.g., (size_t)1.

    Use the right format string for a pointer.

    In the H5C sanity checks, change a "size increase" variable from ssize_t
    (too narrow) to int64_t (wide enough).

    Parenthesize every appearance of `storage` in the macro
    `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an
    expression like &sc and it works properly.

    Disallow re-assignment of the `dset` parameter to H5D__chunk_init()
    because it helped assure me that it's safe to replace the repeating
    expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout.

    Replace lengthy expressions such as
    `&dset->shared->layout.storage.u.chunk` with `sc` throughout several
    functions in H5Dchunk.c ISTR that the compiler warned that `sc` was
    declared but unused in a couple of functions, and then I found that `sc`
    could be used in many places.  Maybe the disused `sc` appeared because a
    bunch of code was copied and pasted, I don't know.  Anyway, it's a lot
    tighter code now that I use `sc`.

    In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete()
    I actually expand `sc` and another temporary variable, `pline`,
    because they're used only in !defined(NDEBUG) code.  This squashes
    unused-variable warnings in the defined(NDEBUG) configuration.

    Don't drop the `volatile` qualification with a cast in
    tools/src/h5import/h5import.c.

commit 035bfa0769a4012881fc659b673bacf44d146537
Author: David Young <dyoung@hdfgroup.org>
Date:   Tue Jan 28 20:35:28 2020 -0600

    Reduce differences between my -Werror branch and `develop`:

    Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC
    shadowed declaration warnings about index(3).

    Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's
    H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.

1 files changed, 16 insertions, 16 deletions

diff --git a/src/H5PL.c b/src/H5PL.c
index fc42554..0f0f88a 100644
--- a/src/H5PL.c
+++ b/src/H5PL.c
@@ -210,13 +210,13 @@ done:
  *-------------------------------------------------------------------------
  */
 herr_t
-H5PLreplace(const char *search_path, unsigned int index)
+H5PLreplace(const char *search_path, unsigned int idx)
 {
     unsigned    num_paths;              /* Current number of stored paths */
     herr_t      ret_value = SUCCEED;    /* Return value */
 
     FUNC_ENTER_API(FAIL)
-    H5TRACE2("e", "*sIu", search_path, index);
+    H5TRACE2("e", "*sIu", search_path, idx);
 
     /* Check args */
     if (NULL == search_path)
@@ -228,11 +228,11 @@ H5PLreplace(const char *search_path, unsigned int index)
     num_paths = H5PL__get_num_paths();
     if (0 == num_paths)
         HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "path table is empty")
-    else if (index >= num_paths)
+    else if (idx >= num_paths)
         HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "index path out of bounds for table - can't be more than %u", (num_paths - 1))
 
     /* Insert the search path into the path table */
-    if (H5PL__replace_path(search_path, index) < 0)
+    if (H5PL__replace_path(search_path, idx) < 0)
         HGOTO_ERROR(H5E_PLUGIN, H5E_CANTINSERT, FAIL, "unable to replace search path")
 
 done:
@@ -252,13 +252,13 @@ done:
  *-------------------------------------------------------------------------
  */
 herr_t
-H5PLinsert(const char *search_path, unsigned int index)
+H5PLinsert(const char *search_path, unsigned int idx)
 {
     unsigned    num_paths;              /* Current number of stored paths */
     herr_t      ret_value = SUCCEED;    /* Return value */
 
     FUNC_ENTER_API(FAIL)
-    H5TRACE2("e", "*sIu", search_path, index);
+    H5TRACE2("e", "*sIu", search_path, idx);
 
     /* Check args */
     if (NULL == search_path)
@@ -268,11 +268,11 @@ H5PLinsert(const char *search_path, unsigned int index)
 
     /* Check index */
     num_paths = H5PL__get_num_paths();
-    if ((0 != num_paths) && (index >= num_paths))
+    if ((0 != num_paths) && (idx >= num_paths))
         HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "index path out of bounds for table - can't be more than %u", (num_paths - 1))
 
     /* Insert the search path into the path table */
-    if (H5PL__insert_path(search_path, index) < 0)
+    if (H5PL__insert_path(search_path, idx) < 0)
         HGOTO_ERROR(H5E_PLUGIN, H5E_CANTINSERT, FAIL, "unable to insert search path")
 
 done:
@@ -294,23 +294,23 @@ done:
  *-------------------------------------------------------------------------
  */
 herr_t
-H5PLremove(unsigned int index)
+H5PLremove(unsigned int idx)
 {
     unsigned    num_paths;              /* Current number of stored paths */
     herr_t      ret_value = SUCCEED;    /* Return value */
 
     FUNC_ENTER_API(FAIL)
-    H5TRACE1("e", "Iu", index);
+    H5TRACE1("e", "Iu", idx);
 
     /* Check index */
     num_paths = H5PL__get_num_paths();
     if (0 == num_paths)
         HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "path table is empty")
-    else if (index >= num_paths)
+    else if (idx >= num_paths)
         HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "index path out of bounds for table - can't be more than %u", (num_paths - 1))
 
     /* Delete the search path from the path table */
-    if (H5PL__remove_path(index) < 0)
+    if (H5PL__remove_path(idx) < 0)
         HGOTO_ERROR(H5E_PLUGIN, H5E_CANTDELETE, FAIL, "unable to remove search path")
 
 done:
@@ -343,7 +343,7 @@ done:
  *-------------------------------------------------------------------------
  */
 ssize_t
-H5PLget(unsigned int index, char *path_buf, size_t buf_size)
+H5PLget(unsigned int idx, char *path_buf, size_t buf_size)
 {
     unsigned    num_paths;              /* Current number of stored paths */
     const char *path = NULL;            /* path from table */
@@ -351,13 +351,13 @@ H5PLget(unsigned int index, char *path_buf, size_t buf_size)
     ssize_t     ret_value = 0;          /* Return value */
 
     FUNC_ENTER_API(FAIL)
-    H5TRACE3("Zs", "Iu*sz", index, path_buf, buf_size);
+    H5TRACE3("Zs", "Iu*sz", idx, path_buf, buf_size);
 
     /* Check index */
     num_paths = H5PL__get_num_paths();
     if (0 == num_paths)
         HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "path table is empty")
-    else if (index >= num_paths)
+    else if (idx >= num_paths)
         HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "index path out of bounds for table - can't be more than %u", (num_paths - 1))
 
     /* Check if the search table is empty */
@@ -365,7 +365,7 @@ H5PLget(unsigned int index, char *path_buf, size_t buf_size)
         HGOTO_ERROR(H5E_PLUGIN, H5E_NOSPACE, (-1), "plugin search path table is empty")
 
     /* Get the path at the specified index and its length */
-    if (NULL == (path = H5PL__get_path(index)))
+    if (NULL == (path = H5PL__get_path(idx)))
         HGOTO_ERROR(H5E_PLUGIN, H5E_BADVALUE, (-1), "no path stored at that index")
     path_len = HDstrlen(path);