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authorAllen Byrne <50328838+byrnHDF@users.noreply.github.com>2022-05-14 04:25:07 (GMT)
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Add H5P doxygen chapter (#1762)
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#define H5_MY_PKG_ERR H5E_PLIST
#define H5_MY_PKG_INIT YES
-/**\defgroup H5P H5P
+/** \page H5P_UG Properties and Property Lists in HDF5
+ *
+ * \section sec_plist Properties and Property Lists in HDF5
+ *
+ * HDF5 property lists are the main vehicle to configure the
+ * behavior of HDF5 API functions.
+ *
+ * Typically, property lists are created by instantiating one of the built-in
+ * or user-defined property list classes. After adding suitable properties,
+ * property lists are used when opening or creating HDF5 items, or when reading
+ * or writing data. Property lists can be modified by adding or changing
+ * properties. Property lists are deleted by closing the associated handles.
+ *
+ * \subsection subsec_plist_intro Introduction
+ *
+ * HDF5 properties and property lists make it possible to shape or modify an HDF5 file, group,
+ * dataset, attribute, committed datatype, or even an I/O stream, in a number of ways. For example,
+ * you can do any of the following:
+ * \li Customize the storage layout of a file to suit a project or task.
+ * \li Create a chunked dataset.
+ * \li Apply compression or filters to raw data.
+ * \li Use either ASCII or UTF-8 character encodings.
+ * \li Create missing groups on the fly.
+ * \li Switch between serial and parallel I/O.
+ * \li Create consistency within a single file or across an international project.
+ *
+ * Some properties enable an HDF5 application to take advantage of the capabilities of a specific
+ * computing environment while others make a file more compact; some speed the reading or
+ * writing of data while others enable more record-keeping at a per-object level. HDF5 offers
+ * nearly one hundred specific properties that can be used in literally thousands of combinations to
+ * maximize the usability of HDF5-stored data.
+ *
+ * At the most basic level, a property list is a collection of properties, represented by name/value
+ * pairs that can be passed to various HDF5 functions, usually modifying default settings. A
+ * property list inherits a set of properties and values from a property list class. But that statement
+ * hardly provides a complete picture; in the rest of this section and in the next section,
+ * \ref subsec_plist_class , we will discuss these things in much more detail.
+ * After reading that material, the reader should have a reasonably complete understanding of how
+ * properties and property lists can be used in HDF5 applications.
+ *
+ * \image html PropListEcosystem.gif "The HDF5 property environment"
+ *
+ * The remaining sections in this chapter discuss the following topics:
+ * \li What are properties, property lists, and property list classes?
+ * \li Property list programming model
+ * \li Generic property functions
+ * \li Summary listings of property list functions
+ * \li Additional resources
+ *
+ * The discussions and function listings in this chapter focus on general property operations, object
+ * and link properties, and related functions.
+ *
+ * File, group, dataset, datatype, and attribute properties are discussed in the chapters devoted to
+ * those features, where that information will be most convenient to users. For example, \ref sec_dataset
+ * discusses dataset creation property lists and functions, dataset access property lists and
+ * functions, and dataset transfer property lists and functions. This chapter does not duplicate those
+ * discussions.
+ *
+ * Generic property operations are an advanced feature and are beyond the scope of this guide.
+ *
+ * This chapter assumes an understanding of the following chapters of this \ref UG
+ * \li \ref sec_data_model
+ * \li \ref sec_program
+ *
+ * \subsection subsec_plist_class Property List Classes, Property Lists, and Properties
+ *
+ * HDF5 property lists and the property list interface \ref H5P provide a mechanism for storing
+ * characteristics of objects in an HDF5 file and economically passing them around in an HDF5
+ * application. In this capacity, property lists significantly reduce the burden of additional function
+ * parameters throughout the HDF5 API. Another advantage of property lists is that features can
+ * often be added to HDF5 by adding only property list functions to the API; this is particularly true
+ * when all other requirements of the feature can be accomplished internally to the library.
+ *
+ * For instance, a file creation operation needs to know several things about a file, such as the size
+ * of the userblock or the sizes of various file data structures. Bundling this information as a
+ * property list simplifies the interface by reducing the number of parameters to the function
+ * \ref H5Fcreate.
+ *
+ * As illustrated in the figure above ("The HDF5 property environment"), the HDF5 property
+ * environment is a three-level hierarchy:
+ * \li Property list classes
+ * \li Property lists
+ * \li Properties
+ *
+ * The following subsections discuss property list classes, property lists, and properties in more detail.
+ *
+ * \subsubsection subsubsec_plist_class Property List Classes
+ *
+ * A property list class defines the roles that property lists of that class can play. Each class includes
+ * all properties that are valid for that class with each property set to its default value. HDF5 offers
+ * a property lists class for each of the following situations.
+ *
+ * <table>
+ * <caption align=top>Property list classes in HDF5</caption>
+ * <tr><th>Property List Class</th><th></th><th>For further discussion</th></tr>
+ * <tr valign="top">
+ * <td>
+ * File creation (FCPL)
+ * </td>
+ * <td>
+ * \ref H5P_FILE_CREATE
+ * </td>
+ * <td>
+ * See various sections of \ref sec_file
+ * </td>
+ * <tr valign="top">
+ * <td>
+ * File access (FAPL)
+ * </td>
+ * <td>
+ * \ref H5P_FILE_ACCESS
+ * </td>
+ * <td>
+ * Used only as \ref H5P_DEFAULT.
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * File mount (FMPL)
+ * </td>
+ * <td>
+ * \ref H5P_FILE_MOUNT
+ * </td>
+ * <td>
+ * For more information, see \ref FileMountProps "File Mount Properties"
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Object creation (OCPL)
+ * </td>
+ * <td>
+ * \ref H5P_OBJECT_CREATE
+ * </td>
+ * <td>
+ * See \ref OCPL
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Object copy (OCPYPL)
+ * </td>
+ * <td>
+ * \ref H5P_OBJECT_COPY
+ * </td>
+ * <td>
+ *
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Group creation (GCPL)
+ * </td>
+ * <td>
+ * \ref H5P_GROUP_CREATE
+ * </td>
+ * <td>
+ * See \ref subsec_group_program
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Group access (GAPL)
+ * </td>
+ * <td>
+ * \ref H5P_GROUP_ACCESS
+ * </td>
+ * <td>
+ *
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Link creation (LCPL)
+ * </td>
+ * <td>
+ * \ref H5P_LINK_CREATE
+ * </td>
+ * <td>
+ * See examples in \ref subsec_plist_program and \ref LCPL
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Link access (LAPL)
+ * </td>
+ * <td>
+ * \ref H5P_LINK_ACCESS
+ * </td>
+ * <td>
+ *
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Dataset creation (DCPL)
+ * </td>
+ * <td>
+ * \ref H5P_DATASET_CREATE
+ * </td>
+ * <td>
+ * See \ref subsec_dataset_program
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Dataset access (DAPL)
+ * </td>
+ * <td>
+ * \ref H5P_DATASET_ACCESS
+ * </td>
+ * <td>
+ *
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Dataset transfer (DXPL)
+ * </td>
+ * <td>
+ * \ref H5P_DATASET_XFER
+ * </td>
+ * <td>
+ *
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Datatype creation (TCPL)
+ * </td>
+ * <td>
+ * \ref H5P_DATATYPE_CREATE
+ * </td>
+ * <td>
+ * See various sections of \ref sec_datatype
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * String creation (STRCPL)
+ * </td>
+ * <td>
+ * \ref H5P_STRING_CREATE
+ * </td>
+ * <td>
+ * See \ref subsec_dataset_program and \ref subsec_datatype_program
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Attribute creation (ACPL)
+ * </td>
+ * <td>
+ * \ref H5P_ATTRIBUTE_CREATE
+ * </td>
+ * <td>
+ * See \ref subsec_attribute_work.
+ * </td>
+ * </tr>
+ * </table>
+ *
+ * Note: In the table above, the abbreviations to the right of each property list class name in this
+ * table are widely used in both HDF5 programmer documentation and HDF5 source code. For
+ * example, \ref FCPL (FCPL) is the file creation property list, \ref OCPL (OCPL) is the object creation
+ * property list, \ref OCPYPL (OCPYPL) is object copy property list, and \ref STRCPL (STRCPL) is the string
+ * creation property list. These abbreviations may appear in either uppercase or lowercase.
+ *
+ * The “HDF5 property list class inheritance hierarchy” figure, immediately following, illustrates
+ * the inheritance hierarchy of HDF5’s property list classes. Properties are defined at the root of the
+ * HDF5 property environment (\ref PLCR in the figure below). Property list
+ * classes then inherit properties from that root, either directly or indirectly through a parent class.
+ * In every case, a property list class inherits only the properties relevant to its role. For example,
+ * the \ref OCPL (OCPL) inherits all properties that are relevant to the
+ * creation of any object while the \ref GCPL (GCPL) inherits only those
+ * properties that are relevant to group creation.
+ *
+ * \image html PropListClassInheritance.gif "HDF5 property list class inheritance hierarchy"
+ * Note: In the figure above, property list classes displayed in black are directly accessible through
+ * the programming interface; the root of the property environment and the \ref STRCPL and \ref OCPL
+ * property list classes, in gray above, are not user-accessible. The red empty set symbol indicates
+ * that the \ref FMPL (FMPL) is an empty class; that is, it has no set table
+ * properties. For more information, see \ref FileMountProps "File Mount Properties". Abbreviations
+ * used in this figure are defined in the preceding table, “Property list classes in HDF5”.
+ *
+ *
+ * \subsubsection subsubsec_plist_lists Property Lists
+ *
+ * A property list is a collection of related properties that are used together in specific
+ * circumstances. A new property list created from a property list class inherits the properties of the
+ * property list class and each property’s default value. A fresh dataset creation property list, for
+ * example, includes all of the HDF5 properties relevant to the creation of a new dataset.
+ *
+ * Property lists are implemented as containers holding a collection of name/value pairs. Each pair
+ * specifies a property name and a value for the property. A property list usually contains
+ * information for one to many properties.
+ *
+ * HDF5’s default property values are designed to be reasonable for general use cases. Therefore,
+ * an application can often use a property list without modification. On the other hand, adjusting
+ * property list settings is a routine action and there are many reasons for an application to do so.
+ *
+ * A new property list may either be derived from a property list class or copied from an existing
+ * property list. When a property list is created from a property list class, it contains all the
+ * properties that are relevant to the class, with each property set to its default value. A new
+ * property list created by copying an existing property list will contain the same properties and
+ * property values as the original property list. In either case, the property values can be changed as
+ * needed through the HDF5 API.
+ *
+ * Property lists can be freely reused to create consistency. For example, a single set of file, group,
+ * and dataset creation property lists might be created at the beginning of a project and used to
+ * create hundreds, thousands, even millions, of consistent files, file structures, and datasets over
+ * the project’s life. When such consistency is important to a project, this is an economical means
+ * of providing it.
+ *
+ * \subsubsection subsubsec_plist_props Properties
+ *
+ * A property is the basic element of the property list hierarchy. HDF5 offers nearly one hundred
+ * properties controlling things ranging from file access rights, to the storage layout of a dataset,
+ * through optimizing the use of a parallel computing environment.
+ *
+ * Further examples include the following:
+ * <table>
+ * <tr><th>Purpose</th><th>Examples</th><th>Property List</th></tr>
+ * <tr valign="top">
+ * <td>
+ * Specify the driver to be used to open a file
+ * </td>
+ * <td>
+ * A POSIX driver or an MPI IO driver
+ * </td>
+ * <td>
+ * \ref FAPL
+ * </td>
+ * <tr valign="top">
+ * <td>
+ * Specify filters to be applied to a dataset
+ * </td>
+ * <td>
+ * Gzip compression or checksum evaluation
+ * </td>
+ * <td>
+ * \ref DCPL
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Specify whether to record key times associated with an object
+ * </td>
+ * <td>
+ * Creation time and/or last-modified time
+ * </td>
+ * <td>
+ * \ref OCPL
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Specify the access mode for a file opened via an external link
+ * </td>
+ * <td>
+ * Read-only or read-write
+ * </td>
+ * <td>
+ * \ref LAPL
+ * </td>
+ * </tr>
+ * </table>
+ *
+ * Each property is initialized with a default value. For each property, there are one or more
+ * dedicated H5Pset_*calls that can be used to change that value.
+ *
+ * <h4>Creation, access, and transfer properties:</h4>
+ *
+ * Properties fall into one of several major categories: creation properties, access properties, and
+ * transfer properties.
+ *
+ * Creation properties control permanent object characteristics. These characteristics must be
+ * established when an object is created, cannot change through the life of the object (they are
+ * immutable), and the property setting usually has a permanent presence in the file.
+ *
+ * <table>
+ * <caption align=top>Examples of creation properties include:</caption>
+ * <tr>
+ * <td>
+ * <p>
+ * Whether a dataset is stored in a compact, contiguous, or chunked layout <br />
+ * <br />
+ * The default for this dataset creation property (\ref H5Pset_layout) is that a dataset is
+ * stored in a contiguous block. This works well for datasets with a known size limit that
+ * will fit easily in system memory. <br />
+ * <br />
+ * A chunked layout is important if a dataset is to be compressed, to enable extending
+ * the dataset’s size, or to enable caching during I/O. <br />
+ * <br />
+ * A compact layout is suitable only for very small datasets because the raw data is
+ * stored in the object header.
+ * </p>
+ * </td>
+ * </tr>
+ * <tr>
+ * <td>
+ * <p>
+ * Creation of intermediate groups when adding an object to an HDF5 file<br />
+ * <br />
+ * This link creation property, \ref H5Pset_create_intermediate_group, enables an
+ * application to add an object in a file without having to know that the group or group
+ * hierarchy containing that object already exists. With this property set, HDF5
+ * automatically creates missing groups. If this property is not set, an application must
+ * verify that each group in the path exists, and create those that do not, before creating
+ * the new object; if any group is missing, the create operation will fail.
+ * </p>
+ * </td>
+ * </tr>
+ * <tr>
+ * <td>
+ * <p>
+ * Whether an HDF5 file is a single file or a set of tightly related files that form a virtual
+ * HDF5 file<br />
+ * <br />
+ * Certain file creation properties enable the application to select one of several file
+ * layouts. Examples of the available layouts include a standard POSIX-compliant
+ * layout (\ref H5Pset_fapl_sec2), a family of files (\ref H5Pset_fapl_family), and a split file
+ * layout that separates raw data and metadata into separate files (\ref H5Pset_fapl_split).
+ * These and other file layout options are discussed in \ref subsec_file_alternate_drivers.
+ * </p>
+ * </td>
+ * </tr>
+ * <tr>
+ * <td>
+ * <p>
+ * To enable error detection when creating a dataset<br />
+ * <br />
+ * In settings where data integrity is vulnerable, it may be desirable to set
+ * checksumming when datasets are created (\ref H5Pset_fletcher32). A subsequent
+ * application will then have a means to verify data integrity when reading the dataset.
+ * </p>
+ * </td>
+ * </tr>
+ * </table>
+ *
+ * Access properties control transient object characteristics. These characteristics may change with
+ * the circumstances under which an object is accessed.
+ *
+ * <table>
+ * <caption align=top>Examples of access properties include:</caption>
+ * <tr>
+ * <td>
+ * <p>
+ * The driver used to open a file<br />
+ * <br />
+ * For example, a file might be created with the MPI I/O driver (\ref H5Pset_fapl_mpio)
+ * during high-speed data acquisition in a parallel computing environment. The same
+ * file might later be analyzed in a serial computing environment with I/O access
+ * handled through the serial POSIX driver (\ref H5Pset_fapl_sec2).
+ * </p>
+ * </td>
+ * </tr>
+ * <tr>
+ * <td>
+ * <p>
+ * Optimization settings in specialized environments<br />
+ * <br />
+ * Optimizations differ across computing environments and according to the needs of
+ * the task being performed, so are transient by nature.
+ * </p>
+ * </td>
+ * </tr>
+ * </table>
+ *
+ * Transfer properties apply only to datasets and control transient aspects of data I/O. These
+ * characteristics may change with the circumstances under which data is accessed.
+ *
+ * <table>
+ * <caption align=top>Examples of dataset transfer properties include:</caption>
+ * <tr>
+ * <td>
+ * <p>
+ * To enable error detection when reading a dataset<br />
+ * <br />
+ * If checksumming has been set on a dataset (with \ref H5Pset_fletcher32, in the dataset
+ * creation property list), an application reading that dataset can choose whether to check
+ * for data integrity (\ref H5Pset_edc_check).
+ * </p>
+ * </td>
+ * </tr>
+ * <tr>
+ * <td>
+ * <p>
+ * Various properties to optimize chunked data I/O on parallel computing systems<br />
+ * <br />
+ * HDF5 provides several properties for tuning I/O of chunked datasets in a parallel
+ * computing environment (\ref H5Pset_dxpl_mpio_chunk_opt, \ref H5Pset_dxpl_mpio_chunk_opt_num,
+ * \ref H5Pset_dxpl_mpio_chunk_opt_ratio, and \ref H5Pget_mpio_actual_chunk_opt_mode).<br />
+ * <br />
+ * Optimal settings differ due to the characteristics of a computing environment and due
+ * to an application’s data access patterns; even when working with the same file, these
+ * settings might change for every application and every platform.
+ * </p>
+ * </td>
+ * </tr>
+ * </table>
+ *
+ * \subsection subsec_plist_program Programming Model for Properties and Property Lists
+ *
+ * The programming model for HDF5 property lists is actually quite simple:
+ * \li Create a property list.
+ * \li Modify the property list, if required.
+ * \li Use the property list.
+ * \li Close the property list.
+ *
+ * There are nuances, of course, but that is the basic process.
+ *
+ * In some cases, you will not have to define property lists at all. If the default property settings are
+ * sufficient for your application, you can tell HDF5 to use the default property list.
+ *
+ * The following sections first discuss the use of default property lists, then each step of the
+ * programming model, and finally a few less frequently used property list operations.
+ *
+ * \subsubsection subsubsec_plist_default Using Default Property Lists
+ *
+ * Default property lists can simplify many routine HDF5 tasks because you do not always have to
+ * create every property list you use.
+ *
+ * An application that would be well-served by HDF5’s default property settings can use the default
+ * property lists simply by substituting the value \ref H5P_DEFAULT for a property list identifier.
+ * HDF5 will then apply the default property list for the appropriate property list class.
+ *
+ * For example, the function \ref H5Dcreate2 calls for a link creation property list, a dataset creation
+ * property list, and a dataset access property list. If the default properties are suitable for a dataset,
+ * this call can be made as
+ * \code
+ * dset_id = H5Dcreate2( loc_id, name, dtype_id, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT );
+ * \endcode
+ * HDF5 will then apply the default link creation, dataset creation, and dataset access property lists
+ * correctly.
+ *
+ * Of course, you would not want to do this without considering where it is appropriate, as there
+ * may be unforeseen consequences. Consider, for example, the use of chunked datasets. Optimal
+ * chunking is quite dependent on the makeup of the dataset and the most common access patterns,
+ * both of which must be taken into account in setting up the size and shape of chunks.
+ *
+ * \subsubsection subsubsec_plist_basic Basic Steps of the Programming Model
+ *
+ * The steps of the property list programming model are described in the sub-sections below.
+ *
+ * <h4>Create a Property List</h4>
+ *
+ * A new property list can be created either as an instance of a property list class or by copying an
+ * existing property list. Consider the following examples. A new dataset creation property list is
+ * first created "from scratch" with \ref H5Pcreate. A second dataset creation property list is then
+ * created by copying the first one with \ref H5Pcopy.
+ *
+ * \code
+ * dcplA_id = H5Pcreate (H5P_DATASET_CREATE);
+ * \endcode
+ *
+ * The new dataset creation property list is created as an instance of the property list class
+ * \ref H5P_DATASET_CREATE.
+ *
+ * The new dataset creation property list’s identifier is returned in dcplA_id and the property list is
+ * initialized with default dataset creation property values.
+ *
+ * A list of valid classes appears in the table "Property list classes in HDF5".
+ *
+ * \code
+ * dcplB_id = H5Pcopy (dcplA_id);
+ * \endcode
+ *
+ * A new dataset creation property list, dcplB_id, is created as a copy of dcplA_id and is initialized
+ * with dataset creation property values currently in dcplA_id.
+ *
+ * At this point, dcplA_id and dcplB_id are identical; they will both contain any modified property
+ * values that were changed in dcplA_id before dcplB_id was created. They may, however, diverge
+ * as additional property values are reset in each.
+ *
+ * While we are creating property lists, let’s create a link creation property list; we will need this
+ * property list when the new dataset is linked into the file below:
+ * \code
+ * lcplAB_id = H5Pcreate (H5P_LINK_CREATE);
+ * \endcode
+ *
+ * <h4>Change Property Values</h4>
+ *
+ * This section describes how to set property values.
+ *
+ * Later in this section, the dataset creation property lists dcplA_id and dcplB_id created in the
+ * section above will be used respectively to create chunked and contiguous datasets. To set this up,
+ * we must set the layout property in each property list. The following example sets dcplA_id for
+ * chunked datasets and dcplB_id for contiguous datasets:
+ * \code
+ * error = H5Pset_layout (dcplA_id, H5D_CHUNKED);
+ * error = H5Pset_layout (dcplB_id, H5D_CONTIGUOUS);
+ * \endcode
+ *
+ * Since dcplA_id specifies a chunked layout, we must also set the number of dimensions and the
+ * size of the chunks. The example below specifies that datasets created with dcplA_id will be
+ * 3-dimensional and that the chunk size will be 100 in each dimension:
+ * \code
+ * error = H5Pset_chunk (dcplA_id, 3, [100,100,100]);
+ * \endcode
+ *
+ * These datasets will be created with UTF-8 encoded names. To accomplish that, the following
+ * example sets the character encoding property in the link creation property list to create link
+ * names with UTF-8 encoding:
+ * \code
+ * error = H5Pset_char_encoding (lcplAB_id, H5T_CSET_UTF8);
+ * \endcode
+ *
+ * dcplA_id can now be used to create chunked datasets and dcplB_id to create contiguous datasets.
+ * And with the use of lcplAB_id, they will be created with UTF-8 encoded names.
+ *
+ * <h4>Use the Property List</h4>
+ *
+ * Once the required property lists have been created, they can be used to control various HDF5
+ * processes. For illustration, consider dataset creation.
+ *
+ * Assume that the datatype dtypeAB and the dataspaces dspaceA and dspaceB have been defined
+ * and that the location identifier locAB_id specifies the group AB in the current HDF5 file. We
+ * have already created the required link creation and dataset creation property lists.
+ * For the sake of illustration, we assume that the default dataset access property list meets our application
+ * requirements. The following calls would create the datasets dsetA and dsetB in the group AB.
+ * The raw data in dsetA will be contiguous while dsetB raw data will be chunked; both datasets
+ * will have UTF-8 encoded link names:
+ *
+ * \code
+ * dsetA_id = H5Dcreate2( locAB_id, dsetA, dtypeAB, dspaceA_id,
+ * lcplAB_id, dcplA_id, H5P_DEFAULT );
+ * dsetB_id = H5Dcreate2( locAB_id, dsetB, dtypeAB, dspaceB_id,
+ * lcplAB_id, dcplB_id, H5P_DEFAULT );
+ * \endcode
+ *
+ * <h4>Close the Property List</h4>
+ *
+ * Generally, creating or opening anything in an HDF5 file results in an HDF5 identifier. These
+ * identifiers are of HDF5 type hid_t and include things like file identifiers, often expressed as
+ * file_id; dataset identifiers, dset_id; and property list identifiers, plist_id. To reduce the risk of
+ * memory leaks, all of these identifiers must be closed once they are no longer needed.
+ *
+ * Property list identifiers are no exception to this rule, and \ref H5Pclose is used for this purpose. The
+ * calls immediately following would close the property lists created and used in the examples above.
+ *
+ * \code
+ * error = H5Pclose (dcplA_id);
+ * error = H5Pclose (dcplB_id);
+ * error = H5Pclose (lcplAB_id);
+ * \endcode
+ *
+ * \subsubsection subsubsec_plist_additional Additional Property List Operations
+ *
+ * A few property list operations fall outside of the programming model described above. This
+ * section describes those operations.
+ *
+ * <h4>Query the Class of an Existing Property List</h4>
+ *
+ * Occasionally an application will have a property list but not know the corresponding property list
+ * class. A call such as in the following example will retrieve the unknown class of a known property list:
+ * \code
+ * PList_Class = H5Pget_class (dcplA_id);
+ * \endcode
+ *
+ * Upon this function’s return, PList_Class will contain the value \ref H5P_DATASET_CREATE indicating that
+ * dcplA_id is a dataset creation property list.
+
+ * <h4>Determine Current Creation Property List Settings in an Existing Object</h4>
+ *
+ * After a file has been created, another application may work on the file without knowing how the
+ * creation properties for the file were set up. Retrieving these property values is often unnecessary;
+ * HDF5 can read the data and knows how to deal with any properties it encounters.
+ *
+ * But sometimes an application must do something that requires knowing the creation property
+ * settings. HDF5 makes the acquisition of this information fairly straight-forward; for each
+ * property setting call, H5Pset_*, there is a corresponding H5Pget_*call to retrieve the property’s
+ * current setting.
+ *
+ * Consider the following examples which illustrate the determination of dataset layout and chunking settings:
+ *
+ * The application must first identify the creation property list with the appropriate get creation property
+ * list call. There is one such call for each kind of object.
+ *
+ * \ref H5Dget_create_plist will return a property list identifier for the creation property list that was
+ * used to create the dataset. Call it DCPL1_id.
+ *
+ * \ref H5Pset_layout sets a dataset’s layout to be compact, contiguous, or chunked.
+ *
+ * \ref H5Pget_layout called with DCPL1_id will return the dataset’s layout,
+ * either \ref H5D_COMPACT, \ref H5D_CONTIGUOUS, or \ref H5D_CHUNKED.
+ *
+ * \ref H5Pset_chunk sets the rank of a dataset, that is the number of dimensions it will have, and the
+ * maximum size of each dimension.
+ *
+ * \ref H5Pget_chunk, also called with DCPL1_id, will return the rank of the dataset and the maximum
+ * size of each dimension.
+ *
+ * If a creation property value has not been explicitly set, these H5Pget_calls will return the
+ * property’s default value.
+ *
+ * <h4>Determine Access Property Settings</h4>
+ *
+ * Access property settings are quite different from creation properties. Since access property
+ * settings are not retained in an HDF5 file or object, there is normally no knowledge of the settings
+ * that were used in the past. On the other hand, since access properties do not affect characteristics
+ * of the file or object, this is not normally an issue. For more information, see "Access and
+ * Creation Property Exceptions."
+ *
+ * One circumstance under which an application might need to determine access property settings
+ * might be when a file or object is already open but the application does not know the property list
+ * settings. In that case, the application can use the appropriate get access property list
+ * call to retrieve a property list identifier. For example, if the dataset dsetA
+ * from the earlier examples is still open, the following call would return an identifier for the dataset
+ * access property list in use:
+ * \code
+ * dsetA_dacpl_id = H5Dget_access_plist( dsetA_id );
+ * \endcode
+ *
+ * The application could then use the returned property list identifier to analyze the property settings
+ *
+ * \subsection subsec_plist_generic Generic Properties Interface and User-defined Properties
+ *
+ * HDF5’s generic property interface provides tools for managing the entire property hierarchy and
+ * for the creation and management of user-defined property lists and properties. This interface also
+ * makes it possible for an application or a driver to create, modify, and manage custom properties,
+ * property lists, and property list classes. A comprehensive list of functions for this interface
+ * appears under "Generic Property Operations (Advanced)" in the "H5P: Property List Interface"
+ * section of the HDF5 Reference Manual.
+ *
+ * Further discussion of HDF5’s generic property interface and user-defined properties and
+ * property lists is beyond the scope of this document.
+ *
+ * \subsection subsec_plist_H5P Property List Function Summaries
+ *
+ * General property functions, generic property functions and macros, property functions that are
+ * used with multiple types of objects, and object and link property functions are listed below.
+ *
+ * Property list functions that apply to a specific type of object are listed in the chapter that
+ * discusses that object. For example, the \ref sec_dataset chapter has two property list function listings:
+ * one for dataset creation property list functions and one for dataset access property list functions.
+ * As has been stated, this chapter is not intended to describe every property list function.
+ *
+ * \ref H5P reference manual
+ *
+ * \subsection subsec_plist_resources Additional Property List Resources
+ * Property lists are ubiquitous in an HDF5 environment and are therefore discussed in many places
+ * in HDF5 documentation. The following sections and listings in the \ref UG are of
+ * particular interest:
+ * \li In the \ref sec_data_model chapter, see \ref subsubsec_data_model_abstract_plist.
+ * \li In the \ref sec_file chapter, see the following sections and listings:
+ * <ul> <li>\ref subsec_file_creation_access</li>
+ * <li>\ref subsec_file_property_lists</li>
+ * <li>\ref subsubsec_file_examples_props</li>
+ * <li>\ref subsubsec_file_examples_access</li>
+ * <li>"File creation property list functions (H5P)"</li>
+ * <li>"File access property list functions (H5P)"</li>
+ * <li>"File driver functions (H5P)"</li></ul>
+ * \li In the \ref sec_attribute chapter, see "Attribute creation property list functions (H5P)".
+ * \li In the \ref sec_group chapter, see "Group creation property list functions (H5P)".
+ * \li Property lists are discussed throughout \ref sec_dataset.
+ *
+ * All property list functions are described in the \ref H5P section of the
+ * \ref RM. The function index at the top of the page provides a categorized listing
+ * grouped by property list class. Those classes are listed below:
+ * \li File creation properties
+ * \li File access properties
+ * \li Group creation properties
+ * \li Dataset creation properties
+ * \li Dataset access properties
+ * \li Dataset transfer properties
+ * \li Link creation properties
+ * \li Link access properties
+ * \li Object creation properties
+ * \li Object copy properties
+ *
+ * Additional categories not related to the class structure are as follows:
+ * \li General property list operations
+ * \li Generic property list functions
+ *
+ * The general property functions can be used with any property list; the generic property functions
+ * constitute an advanced feature.
+ *
+ * The in-memory file image feature of HDF5 uses property lists in a manner that differs
+ * substantially from their use elsewhere in HDF5. Those who plan to use in-memory file images
+ * must study "File Image Operations" (PDF) in the Advanced Topics in HDF5collection.
+ *
+ * \subsection subsec_plist_notes Notes
+ *
+ * \anchor FileMountProps <h4>File Mount Properties</h4>
+ *
+ * While the file mount property list class \ref H5P_FILE_MOUNT is a valid HDF5 property list class,
+ * no file mount properties are defined by the HDF5 Library. References to a file mount property
+ * list should always be expressed as \ref H5P_DEFAULT, meaning the default file mount property list.
+ *
+ * <h4>Access and Creation Property Exceptions</h4>
+ *
+ * There are a small number of exceptions to the rule that creation properties are always retained in
+ * a file or object and access properties are never retained.
+ *
+ * The following properties are file access properties but they are not transient; they have
+ * permanent and different effects on a file. They could be validly classified as file creation
+ * properties as they must be set at creation time to properly create the file. But they are access
+ * properties because they must also be set when a file is reopened to properly access the file.
+ * <table>
+ * <tr><th>Property</th><th>Related function</th></tr>
+ * <tr valign="top">
+ * <td>
+ * Family file driver
+ * </td>
+ * <td>
+ * \ref H5Pset_fapl_family
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Split file driver
+ * </td>
+ * <td>
+ * \ref H5Pset_fapl_split
+ * </td>
+ * </tr>
+ * <tr valign="top">
+ * <td>
+ * Core file driver
+ * </td>
+ * <td>
+ * \ref H5Pset_fapl_core
+ * </td>
+ * </tr>
+ * </table>
+ *
+ * The following is a link creation property, but it is not relevant after an object has been created
+ * and is not retained in the file or object.
+ * <table>
+ * <tr><th>Property</th><th>Related function</th></tr>
+ * <tr valign="top">
+ * <td>
+ * Create missing intermediate groups
+ * </td>
+ * <td>
+ * \ref H5Pset_create_intermediate_group
+ * </td>
+ * </tr>
+ * </table>
+ *
+ * Previous Chapter \ref sec_error - Next Chapter \ref sec_addition
+ *
+ * \defgroup H5P H5P Properties and Property Lists
*
* Use the functions in this module to manage HDF5 property lists and property
* list classes. HDF5 property lists are the main vehicle to configure the
@@ -61,7 +903,7 @@
* </tr>
* </table>
*
- * \defgroup ALCAPL Attribute and Link Creation Properties
+ * \defgroup STRCPL String Creation Properties
* \ingroup H5P
* Currently, there are only two creation properties that you can use to control
* the creation of HDF5 attributes and links. The first creation property, the
@@ -69,8 +911,26 @@
* The second creation property applies to links only, and advises the library
* to automatically create missing intermediate groups when creating new objects.
*
- * \defgroup DAPL Dataset Access Properties
+ * \defgroup LCPL Link Creation Properties
+ * \ingroup STRCPL
+ * The first creation property, the choice of a character encoding, applies to
+ * both attributes and links.
+ * The second creation property applies to links only, and advises the library
+ * to automatically create missing intermediate groups when creating new objects.
+ *
+ * See \ref STRCPL
+ *
+ * \defgroup ACPL Attribute Creation Properties
+ * \ingroup STRCPL
+ * The creation property, the choice of a character encoding, applies to attributes.
+ *
+ * See \ref STRCPL
+ *
+ * \defgroup LAPL Link Access Properties
* \ingroup H5P
+ *
+ * \defgroup DAPL Dataset Access Properties
+ * \ingroup LAPL
* Use dataset access properties to modify the default behavior of the HDF5
* library when accessing datasets. The properties include adjusting the size
* of the chunk cache, providing prefixes for external content and virtual
@@ -79,7 +939,7 @@
* a dataset is created or opened.
*
* \defgroup DCPL Dataset Creation Properties
- * \ingroup H5P
+ * \ingroup OCPL
* Use dataset creation properties to control aspects of dataset creation such
* as fill time, storage layout, compression methods, etc.
* Unlike dataset access and transfer properties, creation properties \Emph{are}
@@ -102,7 +962,7 @@
* can be adjusted at runtime before a file is created or opened.
*
* \defgroup FCPL File Creation Properties
- * \ingroup H5P
+ * \ingroup GCPL
* Use file creation properties to control aspects of file creation such
* as setting a file space management strategy or creating a user block.
* Unlike file access properties, creation properties \Emph{are}
@@ -110,19 +970,19 @@
* created.
*
* \defgroup GAPL General Access Properties
- * \ingroup H5P
+ * \ingroup LAPL
* The functions in this section can be applied to different kinds of property
* lists.
*
* \defgroup GCPL Group Creation Properties
- * \ingroup H5P
+ * \ingroup OCPL
* Use group creation properties to control aspects of group creation such
* as storage layout, compression, and link creation order tracking.
* Unlike file access properties, creation properties \Emph{are}
* stored with the group, and cannot be changed once a group has been
* created.
*
- * \defgroup GPLO General Property List Operations
+ * \defgroup PLCR Property List Class Root
* \ingroup H5P
*
* Use the functions in this module to manage HDF5 property lists.
@@ -147,7 +1007,7 @@
* </tr>
* </table>
*
- * \defgroup GPLOA General Property List Operations (Advanced)
+ * \defgroup PLCRA Property List Class Root (Advanced)
* \ingroup H5P
*
* You can create and customize user-defined property list classes using the
@@ -175,16 +1035,26 @@
* </tr>
* </table>
*
- * \defgroup LAPL Link Access Properties
+ * \defgroup OCPL Object Creation Properties
* \ingroup H5P
*
+ * \defgroup OCPYPL Object Copy Properties
+ * \ingroup H5P
*
- * \defgroup OCPL Object Creation Properties
+ * \defgroup FMPL File Mount Properties
* \ingroup H5P
*
+ * Empty property class.
*
- * \defgroup OCPPL Object Copy Properties
- * \ingroup H5P
+ * \defgroup TCPL Datatype Creation Properties
+ * \ingroup OCPL
+ *
+ * TCPL isn't supported yet.
+ *
+ * \defgroup TAPL Datatype Access Properties
+ * \ingroup LAPL
+ *
+ * TAPL isn't supported yet.
*
*
*/