[svn-r739] Switched ragged array "H5R" API to "H5RA" to make room for the reference API.

1 files changed, 0 insertions, 1189 deletions

diff --git a/src/H5R.c b/src/H5R.c
deleted file mode 100644
index dec1e34..0000000
--- a/src/H5R.c
+++ /dev/null
@@ -1,1189 +0,0 @@
-/*
- * Copyright © 1998 NCSA
- *                  All rights reserved.
- *
- * Programmer:  Robb Matzke <matzke@llnl.gov>
- *              Tuesday, August 25, 1998
- *
- * Purpose:	A ragged array package layered on top of other HDF5 objects.
- *		This was originally implemented on the HDF5 API but has been
- *		moved under the API so it meshes better with other objects,
- *		is somewhat faster, and has better debugging support.
- *
- * Note:	This file implementes a two dimensional array where each row
- *		of the array is a different length (a.k.a., ragged array). It
- *		is intended for applications where the distribution of row
- *		lengths is such that most rows near an average length with
- *		only a few rows that are significantly shorter or longer. The
- *		raw data is split among two datasets `raw' and `over': the
- *		`raw' dataset is a 2d chunked dataset whose width is large
- *		enough to hold most of the rows and the `over' dataset is a
- *		heap that stores the end of rows that overflow the first
- *		dataset.  A third dataset called `meta' contains one record
- *		for each row and describes what elements (if any) overflow
- *		the `raw' dataset and where they are stored in the `over'
- *		dataset.  All three datasets are contained in a single group
- *		whose name is the name of the ragged array.
- */
-#include <H5Rprivate.h>
-
-#include <H5private.h>
-#include <H5Eprivate.h>
-#include <H5Iprivate.h>
-#include <H5MMprivate.h>
-#include <H5Pprivate.h>
-
-typedef struct H5R_meta_t {
-    hsize_t	nelmts;		/*num elements in row			*/
-    hssize_t	offset;		/*offset into overflow array		*/
-    hsize_t	nover;		/*allocated size in overflow array	*/
-} H5R_meta_t;
-
-struct H5R_t {
-    H5G_t	*group;		/*the group containing everything	*/
-    H5D_t	*meta;		/*ragged meta data array		*/
-    H5D_t	*raw;		/*fixed-width raw data			*/
-    H5D_t	*over;		/*overflow data				*/
-};
-
-#define PABLO_MASK	H5R_mask
-static hbool_t interface_initialize_g = FALSE;
-#define INTERFACE_INIT H5R_init_interface
-static herr_t H5R_init_interface(void);
-static void H5R_term_interface(void);
-static H5T_t *H5R_meta_type_g = NULL;
-
-static herr_t H5R_fix_overflow(H5R_t *ra, H5T_t *type, H5R_meta_t *meta,
-			       hsize_t nelmts, void *buf);
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5R_init_interface
- *
- * Purpose:	Initialize the interface.
- *
- * Return:	Success:	SUCCEED
- *
- *		Failure:	FAIL
- *
- * Programmer:	Robb Matzke
- *              Tuesday, August 25, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-H5R_init_interface(void)
-{
-    herr_t	ret_value = SUCCEED;
-    H5T_t	*type = NULL;
-    
-    FUNC_ENTER(H5R_init_interface, FAIL);
-
-    /* The atom group */
-    if ((ret_value=H5I_init_group(H5I_RAGGED, H5I_RAGGED_HASHSIZE, 0,
-				  (herr_t(*)(void*))H5R_close))>=0) {
-	ret_value = H5_add_exit(H5R_term_interface);
-    }
-
-    /* The meta dataset type */
-    if (NULL==(type=H5T_create(H5T_COMPOUND, sizeof(H5R_meta_t))) ||
-	H5T_insert(type, "nelmts", HOFFSET(H5R_meta_t, nelmts),
-		   0, NULL, NULL, H5I_object(H5T_NATIVE_HSIZE_g))<0 ||
-	H5T_insert(type, "offset", HOFFSET(H5R_meta_t, offset),
-		   0, NULL, NULL, H5I_object(H5T_NATIVE_HSSIZE_g))<0 ||
-	H5T_insert(type, "nover", HOFFSET(H5R_meta_t, nover),
-		   0, NULL, NULL, H5I_object(H5T_NATIVE_HSIZE_g))) {
-	HRETURN_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-		      "unable to define ragged array meta type");
-    }
-    H5R_meta_type_g = type;
-    
-    FUNC_LEAVE(ret_value);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5R_term_interface
- *
- * Purpose:	Terminate the ragged array interface.
- *
- * Return:	void
- *
- * Programmer:	Robb Matzke
- *              Tuesday, August 25, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-H5R_term_interface(void)
-{
-    H5I_destroy_group(H5I_RAGGED);
-    H5T_close(H5R_meta_type_g);
-    H5R_meta_type_g = NULL;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5Rcreate
- *
- * Purpose:	Create a new ragged array with the specified name.  A ragged
- *		array is implemented as a group containing three datasets.
- *		The dataset `raw' is a fixed width dataset which will hold
- *		the majority of the data.  The dataset `over' is a one
- *		dimensional heap which will hold the end of rows which are
- *		too long to fit in `raw'.  Finally, the `meta' dataset
- *		contains information about the `over' array.  All elements of
- *		the ragged array are stored with the same data type.
- *
- *		The property list PLIST_ID  should contain information about
- *		chunking. The chunk width will determine the width of the
- *		`raw' dataset while the chunk length should be such that the
- *		total chunk size is reasonably large (I/O will be performed
- *		in units of chunks).  If the PLIST_ID doesn't have a chunk
- *		size defined (e.g., H5P_DEFAULT) then this function will fail.
- *
- * Return:	Success:	A ragged array ID.
- *
- *		Failure:	FAIL
- *
- * Programmer:	Robb Matzke
- *              Tuesday, August 25, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-hid_t
-H5Rcreate(hid_t loc_id, const char *name, hid_t type_id, hid_t plist_id)
-{
-    H5R_t		*ra=NULL;
-    H5G_entry_t		*loc=NULL;
-    H5T_t		*type=NULL;
-    const H5D_create_t	*plist=NULL;
-    hid_t		ret_value=FAIL;
-    
-    FUNC_ENTER(H5Rcreate, FAIL);
-    H5TRACE4("i","isii",loc_id,name,type_id,plist_id);
-
-    /* Check args */
-    if (NULL==(loc=H5G_loc(loc_id))) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location");
-    }
-    if (!name || !*name) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name given");
-    }
-    if (H5I_DATATYPE!=H5I_get_type(type_id) ||
-	NULL==(type=H5I_object(type_id))) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data type");
-    }
-    if (H5P_DEFAULT==plist_id) {
-	plist = &H5D_create_dflt;
-    } else if (H5P_DATASET_CREATE!=H5P_get_class(plist_id) ||
-	       NULL==(plist=H5I_object(plist_id))) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
-		      "not a dataset creation property list");
-    }
-    if (H5D_CHUNKED!=plist->layout) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
-		      "property list must define a chunked storage layout");
-    }
-    if (2!=plist->layout) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
-		      "chunked storage is not two dimensional");
-    }
-    
-    /* Do the real work */
-    if (NULL==(ra=H5R_create(loc, name, type, plist))) {
-	HRETURN_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-		      "unable to create ragged array");
-    }
-
-    /* Register the new dataset to get an ID for it */
-    if ((ret_value=H5I_register(H5I_RAGGED, ra))<0) {
-	H5R_close(ra);
-	HRETURN_ERROR(H5E_RAGGED, H5E_CANTREGISTER, FAIL,
-		      "unable to register ragged array");
-    }
-
-    FUNC_LEAVE(ret_value);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5R_create
- *
- * Purpose:	Create a new ragged array implemented as a group.
- *
- * Return:	Success:	Pointer to the new ragged array.
- *
- *		Failure:	NULL
- *
- * Programmer:	Robb Matzke
- *              Tuesday, August 25, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-H5R_t *
-H5R_create(H5G_entry_t *loc, const char *name, H5T_t *type,
-	   const H5D_create_t *dcpl)
-{
-    H5R_t		*ra = NULL;
-    H5S_t		*space = NULL;
-    hsize_t		cur_dims[2];
-    hsize_t		max_dims[2];
-    H5R_t		*ret_value=NULL;
-    H5D_create_t	d1_dcpl;
-    
-    FUNC_ENTER(H5R_create, NULL);
-
-    /* Check args */
-    assert(loc);
-    assert(name && *name);
-    assert(type);
-    assert(dcpl);
-    assert(H5D_CHUNKED==dcpl->layout);
-
-    /* Create the data struct */
-    if (NULL==(ra=H5MM_calloc(sizeof(H5R_t)))) {
-	HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL,
-		    "memory allocation failed for ragged array struct");
-    }
-
-    /* Create the group to contain the arrays */
-    if (NULL==(ra->group=H5G_create(loc, name, 0))) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, NULL,
-		    "unable to create container group");
-    }
-
-    /* The raw data array */
-    cur_dims[0] = 0;
-    max_dims[0] = H5S_UNLIMITED;
-    cur_dims[1] = max_dims[1] = dcpl->chunk_size[1];
-    if (NULL==(space=H5S_create(H5S_SIMPLE)) ||
-	H5S_set_extent_simple(space, 2, cur_dims, max_dims)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, NULL,
-		    "unable to define raw dataset extents");
-    }
-    if (NULL==(ra->raw=H5D_create(H5G_entof(ra->group), "raw", type, space,
-				  dcpl))) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, NULL,
-		    "unable to create raw dataset");
-    }
-    if (H5S_close(space)<0) {
-	space = NULL;
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, NULL,
-		    "unable to close raw dataset extents");
-    }
-    space = NULL;
-    
-    /* The overflow data array */
-    cur_dims[0] = 0;
-    max_dims[0] = H5S_UNLIMITED;
-    if (NULL==(space=H5S_create(H5S_SIMPLE)) ||
-	H5S_set_extent_simple(space, 1, cur_dims, max_dims)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, NULL,
-		    "unable to define overflow dataset extents");
-    }
-    d1_dcpl = *dcpl;
-    d1_dcpl.chunk_ndims = 1;
-    d1_dcpl.chunk_size[0] = dcpl->chunk_size[0]*dcpl->chunk_size[1];
-    if (NULL==(ra->over=H5D_create(H5G_entof(ra->group), "over", type, space,
-				   &d1_dcpl))) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, NULL,
-		    "unable to create overflow dataset");
-    }
-    if (H5S_close(space)<0) {
-	space = NULL;
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, NULL,
-		    "unable to close overflow dataset extents");
-    }
-    space = NULL;
-    
-    /* The meta data array */
-    cur_dims[0] = 0;
-    max_dims[0] = H5S_UNLIMITED;
-    if (NULL==(space=H5S_create(H5S_SIMPLE)) ||
-	H5S_set_extent_simple(space, 1, cur_dims, max_dims)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, NULL,
-		    "unable to define meta dataset extents");
-    }
-    d1_dcpl.chunk_size[0] = MAX(1,
-				(dcpl->chunk_size[0]*dcpl->chunk_size[1]*
-				 H5T_get_size(type))/
-				H5T_get_size(H5R_meta_type_g));
-    if (NULL==(ra->meta=H5D_create(H5G_entof(ra->group), "meta",
-				   H5R_meta_type_g, space, &d1_dcpl))) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, NULL,
-		    "unable to create meta dataset");
-    }
-    if (H5S_close(space)<0) {
-	space = NULL;
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, NULL,
-		    "unable to close meta dataset extents");
-    }
-    space = NULL;
-
-    ret_value = ra;
-
- done:
-    if (!ret_value) {
-	if (space) H5S_close(space);
-	if (ra) {
-	    if (ra->group) H5G_close(ra->group);
-	    if (ra->raw) H5D_close(ra->raw);
-	    if (ra->over) H5D_close(ra->over);
-	    if (ra->meta) H5D_close(ra->meta);
-	    H5MM_xfree(ra);
-	}
-    }
-    FUNC_LEAVE(ret_value);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5Ropen
- *
- * Purpose:	Opens an existing ragged array.  The name of the array should
- *		be the same that was used when the array was created; that is,
- *		the name of the group which implements the array.
- *		
- * Return:	Success:	An array ID
- *
- *		Failure:	FAIL
- *
- * Programmer:	Robb Matzke
- *              Tuesday, August 25, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-hid_t
-H5Ropen(hid_t loc_id, const char *name)
-{
-    H5G_entry_t	*loc=NULL;
-    H5R_t	*ra=NULL;
-    hid_t	ret_value=FAIL;
-    
-    FUNC_ENTER(H5Ropen, FAIL);
-    H5TRACE2("i","is",loc_id,name);
-
-    /* Check args */
-    if (NULL==(loc=H5G_loc(loc_id))) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location");
-    }
-    if (!name || !*name) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name given");
-    }
-
-    /* The real work */
-    if (NULL==(ra=H5R_open(loc, name))) {
-	HRETURN_ERROR(H5E_RAGGED, H5E_CANTOPENOBJ, FAIL,
-		      "unable to open ragged array");
-    }
-
-    /* Turn it into an atom */
-    if ((ret_value=H5I_register(H5I_RAGGED, ra))<0) {
-	H5R_close(ra);
-	HRETURN_ERROR(H5E_RAGGED, H5E_CANTREGISTER, FAIL,
-		      "unable to register ragged array");
-    }
-
-    FUNC_LEAVE(ret_value);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5R_open
- *
- * Purpose:	Open a ragged array.  The name of the array is the same as
- *		the group that implements the array.
- *
- * Return:	Success:	Ptr to a new ragged array object.
- *
- *		Failure:	NULL
- *
- * Programmer:	Robb Matzke
- *              Tuesday, August 25, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-H5R_t *
-H5R_open(H5G_entry_t *loc, const char *name)
-{
-    H5R_t	*ra = NULL;
-    H5R_t	*ret_value = NULL;
-    
-    FUNC_ENTER(H5R_open, NULL);
-
-    /* Check arguments */
-    assert(loc);
-    assert(name && *name);
-
-    /* Create the struct */
-    if (NULL==(ra=H5MM_calloc(sizeof(H5R_t)))) {
-	HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL,
-		    "memory allocation failed for ragged array struct");
-    }
-
-    /* Open the containing group */
-    if (NULL==(ra->group=H5G_open(loc, name))) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTOPENOBJ, NULL,
-		    "unable to open container group");
-    }
-
-    /* Open the datasets */
-    if (NULL==(ra->raw=H5D_open(H5G_entof(ra->group), "raw")) ||
-	NULL==(ra->over=H5D_open(H5G_entof(ra->group), "over")) ||
-	NULL==(ra->meta=H5D_open(H5G_entof(ra->group), "meta"))) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTOPENOBJ, NULL,
-		    "unable to open one or more component datasets");
-    }
-
-    ret_value = ra;
-    
- done:
-    if (!ret_value) {
-	if (ra) {
-	    if (ra->group) H5G_close(ra->group);
-	    if (ra->raw) H5D_close(ra->raw);
-	    if (ra->over) H5D_close(ra->over);
-	    if (ra->meta) H5D_close(ra->meta);
-	    H5MM_xfree(ra);
-	}
-    }
-    FUNC_LEAVE(ret_value);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5Rclose
- *
- * Purpose:	Close a ragged array.
- *
- * Return:	Success:	SUCCEED
- *
- *		Failure:	FAIL
- *
- * Programmer:	Robb Matzke
- *              Tuesday, August 25, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5Rclose(hid_t array_id)
-{
-    H5R_t	*ra=NULL;
-    
-    FUNC_ENTER(H5Rclose, FAIL);
-    H5TRACE1("e","i",array_id);
-
-    /* Check args */
-    if (H5I_RAGGED!=H5I_get_type(array_id) ||
-	NULL==(ra=H5I_object(array_id))) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a ragged array");
-    }
-    
-    /*
-     * Decrement the counter on the array.  It will be freed if the count
-     * reaches zero.
-     */
-    if (H5I_dec_ref(array_id) < 0) {
-	HRETURN_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to free");
-    }
-    
-    FUNC_LEAVE(SUCCEED);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5R_close
- *
- * Purpose:	Close a ragged array
- *
- * Return:	Success:	SUCCEED
- *
- *		Failure:	FAIL
- *
- * Programmer:	Robb Matzke
- *              Tuesday, August 25, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5R_close(H5R_t *ra)
-{
-    FUNC_ENTER(H5R_close, FAIL);
-
-    assert(ra);
-    if ((ra->group && H5G_close(ra->group)<0) ||
-	(ra->raw && H5D_close(ra->raw)<0) ||
-	(ra->over && H5D_close(ra->over)<0) ||
-	(ra->meta && H5D_close(ra->meta)<0)) {
-	HRETURN_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-		      "unable to close one or more component datasets");
-    }
-    HDmemset(ra, 0, sizeof(H5R_t));
-    H5MM_xfree(ra);
-
-    FUNC_LEAVE(SUCCEED);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5Rwrite
- *
- * Purpose:	Write a contiguous set of rows to a ragged array beginning at
- *		row number START_ROW and continuing for NROWS rows.  Each row
- *		of the ragged array contains SIZE[] elements of type TYPE_ID
- *		and each row is stored in a buffer pointed to by BUF[].
- *
- * Return:	Success:	SUCCEED
- *
- *		Failure:	FAIL
- *
- * Programmer:	Robb Matzke
- *              Tuesday, August 25, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5Rwrite(hid_t array_id, hssize_t start_row, hsize_t nrows,
-	 hid_t type_id, hsize_t size[/*nrows*/], void *buf[/*nrows*/])
-{
-    H5R_t	*ra=NULL;
-    H5T_t	*type=NULL;
-    hsize_t	i;
-    
-    FUNC_ENTER(H5Rwrite, FAIL);
-    H5TRACE6("e","iHshi*[a2]h*[a2]x",array_id,start_row,nrows,type_id,size,
-             buf);
-
-    /* Check args */
-    if (H5I_RAGGED!=H5I_get_type(array_id) ||
-	NULL==(ra=H5I_object(array_id))) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a ragged array");
-    }
-    if (H5I_DATATYPE!=H5I_get_type(type_id) ||
-	NULL==(type=H5I_object(type_id))) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data type");
-    }
-    if (nrows>0 && !size) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no size array");
-    }
-    if (nrows>0 && !buf) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no output buffer array");
-    }
-    for (i=0; i<nrows; i++) {
-	if (size[i]>0 && !buf[i]) {
-	    HRETURN_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
-			  "one or more buffer points are null");
-	}
-    }
-    
-    /* Do the work */
-    if (H5R_write(ra, start_row, nrows, type, size, buf)<0) {
-	HRETURN_ERROR(H5E_RAGGED, H5E_WRITEERROR, FAIL,
-		      "unable to write to ragged array");
-    }
-
-    FUNC_LEAVE(SUCCEED);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5R_write
- *
- * Purpose:	Write a contiguous set of rows to a ragged array beginning at
- *		row number START_ROW and continuing for NROWS rows.  Each row
- *		of the ragged array contains SIZE[] elements of type TYPE_ID
- *		and each row is stored in a buffer pointed to by BUF[].
- *
- * Return:	Success:	SUCCEED
- *
- *		Failure:	FAIL
- *
- * Programmer:	Robb Matzke
- *              Tuesday, August 25, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5R_write(H5R_t *ra, hssize_t start_row, hsize_t nrows, H5T_t *type,
-	  hsize_t size[], void *buf[])
-{
-    herr_t	ret_value=FAIL;
-    H5R_meta_t	*meta = NULL;
-    H5S_t	*mf_space=NULL;		/*meta file data space		*/
-    H5S_t	*mm_space=NULL;		/*meta memory data space	*/
-    H5S_t	*rf_space=NULL;		/*raw data file space		*/
-    H5S_t	*rm_space=NULL;		/*raw data memory space		*/
-    hsize_t	meta_cur_size;		/*current meta data nelmts	*/
-    hsize_t	meta_read_size;		/*amount to read		*/
-    hsize_t	raw_cur_size[2];	/*raw data current size		*/
-    hssize_t	hs_offset[2];		/*hyperslab offset		*/
-    hsize_t	hs_size[2];		/*hyperslab size		*/
-    uint8	*raw_buf=NULL;		/*raw buffer			*/
-    size_t	type_size;		/*size of the TYPE argument	*/
-    hsize_t	i;
-    
-    FUNC_ENTER(H5R_write, FAIL);
-
-    /* Check args */
-    assert(ra);
-    assert(type);
-    assert(0==nrows || size);
-    assert(0==nrows || buf);
-    if (0==nrows) HRETURN(SUCCEED);
-    type_size = H5T_get_size(type);
-
-    /* Get the meta data */
-    if (NULL==(mf_space=H5D_get_space(ra->meta)) ||
-	H5S_get_simple_extent_dims(mf_space, &meta_cur_size, NULL)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-		    "unable to get current meta data extents");
-    }
-    if ((hsize_t)start_row>=meta_cur_size) {
-	meta_read_size = 0;
-    } else {
-	meta_read_size = MIN(nrows, meta_cur_size-(hsize_t)start_row);
-    }
-    if (NULL==(mm_space=H5S_create(H5S_SIMPLE)) ||
-	H5S_set_extent_simple(mm_space, 1, &meta_read_size, NULL)<0 ||
-	H5S_select_hyperslab(mf_space, H5S_SELECT_SET, &start_row, NULL,
-			     &meta_read_size, NULL)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-		    "unable to set meta data selection");
-    }
-    if (NULL==(meta=H5MM_malloc(nrows*sizeof(H5R_meta_t)))) {
-	HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL,
-		    "memory allocation failed for meta data");
-    }
-    if (H5D_read(ra->meta, H5R_meta_type_g, mm_space, mf_space,
-		 &H5D_xfer_dflt, meta)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_READERROR, FAIL,
-		    "unable to read meta data");
-    }
-    HDmemset(meta+meta_read_size, 0,
-	     (nrows-meta_read_size)*sizeof(H5R_meta_t));
-
-    /* Write the part of the data that will fit in the raw dataset */
-    if (NULL==(rf_space=H5D_get_space(ra->raw)) ||
-	H5S_get_simple_extent_dims(rf_space, raw_cur_size, NULL)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-		    "unable to determine current raw data extents");
-    }
-    if (NULL==(raw_buf=H5MM_malloc(nrows*raw_cur_size[1]*type_size))) {
-	HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL,
-		    "unable to allocate buffer for raw data");
-    }
-    for (i=0; i<nrows; i++) {
-	size_t nbytes = MIN(size[i], raw_cur_size[1])*type_size;
-	HDmemcpy(raw_buf+i*raw_cur_size[1]*type_size, buf[i], nbytes);
-	HDmemset(raw_buf+i*raw_cur_size[1]*type_size+nbytes, 0,
-		 raw_cur_size[1]*type_size-nbytes);
-    }
-    if ((hsize_t)start_row+nrows>raw_cur_size[0]) {
-	raw_cur_size[0] = (hsize_t)start_row + nrows;
-	if (H5D_extend(ra->raw, raw_cur_size)<0) {
-	    HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-			"unable to extend raw dataset");
-	}
-    }
-    hs_offset[0] = start_row;
-    hs_offset[1] = 0;
-    hs_size[0] = nrows;
-    hs_size[1] = raw_cur_size[1];
-    if (NULL==(rm_space=H5S_create(H5S_SIMPLE)) ||
-	H5S_set_extent_simple(rm_space, 2, hs_size, NULL)<0 ||
-	H5S_select_hyperslab(rf_space, H5S_SELECT_SET,
-			     hs_offset, NULL, hs_size, NULL)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-		    "unable to set meta data selection");
-    }
-    if (H5D_write(ra->raw, type, rm_space, rf_space, &H5D_xfer_dflt,
-		  raw_buf)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_WRITEERROR, FAIL,
-		    "unable to write raw data");
-    }
-    
-    /* Update the meta data */
-    for (i=0; i<nrows; i++) {
-	if (size[i]>raw_cur_size[1]) {
-	    H5R_fix_overflow(ra, type, meta+i, size[i]-raw_cur_size[1],
-			     (uint8*)(buf[i])+raw_cur_size[1]*type_size);
-	}
-	meta[i].nelmts = size[i];
-    }
-    
-    /* Extend and write the new meta data */
-    if ((hsize_t)start_row+nrows>meta_cur_size) {
-	meta_cur_size = (hsize_t)start_row+nrows;
-	if (H5D_extend(ra->meta, &meta_cur_size)<0) {
-	    HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-			"unable to extend meta dataset");
-	}
-    }
-    if (H5S_set_extent_simple(mm_space, 1, &nrows, NULL)<0 ||
-	H5S_select_hyperslab(mf_space, H5S_SELECT_SET, &start_row, NULL,
-			     &nrows, NULL)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-		    "unable to set meta data selection");
-    }
-    if (H5D_write(ra->meta, H5R_meta_type_g, mm_space, mf_space,
-		  &H5D_xfer_dflt, meta)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_WRITEERROR, FAIL,
-		    "unable to write meta data");
-    }
-    
-    ret_value = SUCCEED;
- done:
-    H5MM_xfree(meta);
-    H5MM_xfree(raw_buf);
-    if (mm_space) H5S_close(mm_space);
-    if (mf_space) H5S_close(mf_space);
-    if (rm_space) H5S_close(rm_space);
-    if (rf_space) H5S_close(rf_space);
-	
-    FUNC_LEAVE(ret_value);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5R_fix_overflow
- *
- * Purpose:	Updates the overflow information for a row.  This is where
- *		the heap management comes into play.  The NELMTS is the
- *		number of elements that overflow into the heap and BUF is a
- *		pointer to those elements.  The first part of the row has
- *		already been written to the raw dataset.
- *
- * Return:	Success:	SUCCEED
- *
- *		Failure:	FAIL
- *
- * Programmer:	Robb Matzke
- *              Wednesday, August 26, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-H5R_fix_overflow(H5R_t *ra, H5T_t *type, H5R_meta_t *meta, hsize_t nelmts,
-		 void *buf)
-{
-    H5S_t	*of_space=NULL;		/*overflow file space		*/
-    H5S_t	*om_space=NULL;		/*overflow memory space		*/
-    hsize_t	cur_size;		/*num elmts in overflow dataset	*/
-    herr_t	ret_value=FAIL;		/*return value			*/
-    
-    FUNC_ENTER(H5R_fix_overflow, FAIL);
-    
-    assert(ra);
-    assert(meta);
-    assert(buf);
-
-    if (nelmts==meta->nover) {
-	/* The space is already allocated -- do nothing */
-	
-    } else if (nelmts<meta->nover) {
-	/* Too much space is allocated -- free the extra */
-#ifndef LATER
-	/*
-	 * For now we don't worry about reclaiming space.  But we remember
-	 * the original amount allocated to allow the row to grow again up to
-	 * that amount.
-	 */
-#endif
-	
-    } else if (meta->nover>0) {
-	/* Space is allocated but we need more */
-#ifndef LATER
-	/*
-	 * For now we'll just reallocate space at the end of the overflow
-	 * dataset, but eventually we'll want to move the smallest of the
-	 * current overflow, the previous overflow, or the following overflow
-	 * region to the end of the file and be careful to reclaim space.
-	 */
-	if (NULL==(of_space=H5D_get_space(ra->over)) ||
-	    H5S_get_simple_extent_dims(of_space, &cur_size, NULL)<0) {
-	    HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-			"unable to get overflow dataset extents");
-	}
-	meta->offset = (hssize_t)cur_size;
-	meta->nover = nelmts;
-	cur_size += nelmts;
-	if (H5D_extend(ra->over, &cur_size)<0) {
-	    HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-			"unable to extend overflow dataset");
-	}
-#endif
-	
-    } else {
-	/* No space is allocated */
-	assert(nelmts>0);
-	if (NULL==(of_space=H5D_get_space(ra->over)) ||
-	    H5S_get_simple_extent_dims(of_space, &cur_size, NULL)<0) {
-	    HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-			"unable to get overflow dataset extents");
-	}
-	meta->offset = (hssize_t)cur_size;
-	meta->nover = nelmts;
-	cur_size += nelmts;
-	if (H5D_extend(ra->over, &cur_size)<0) {
-	    HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-			"unable to extend overflow dataset");
-	}
-    }
-
-    /* Write the data */
-    if (nelmts>0) {
-	if (!of_space && NULL==(of_space=H5D_get_space(ra->over))) {
-	    HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-			"unable to get overflow dataset extents");
-	}
-	if (NULL==(om_space=H5S_create(H5S_SIMPLE)) ||
-	    H5S_set_extent_simple(om_space, 1, &nelmts, NULL)<0 ||
-	    H5S_select_hyperslab(of_space, H5S_SELECT_SET, &(meta->offset),
-				 NULL, &nelmts, NULL)<0) {
-	    HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-			"unable to set overflow selection");
-	}
-	if (H5D_write(ra->over, type, om_space, of_space, &H5D_xfer_dflt,
-		      buf)<0) {
-	    HGOTO_ERROR(H5E_RAGGED, H5E_WRITEERROR, FAIL,
-			"unable to write to overflow dataset");
-	}
-    }
-    
-    ret_value = SUCCEED;
-    
- done:
-    if (of_space) H5S_close(of_space);
-    if (om_space) H5S_close(om_space);
-    if (ret_value<0) {
-	meta->offset = 0;
-	meta->nover = 0;
-    }
-    FUNC_LEAVE(ret_value);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5Rread
- *
- * Purpose:	Reads the contents of one or more rows of a ragged array
- *		pointed to by ARRAY_ID.  The rows to read begin at row
- *		START_ROW and continue for NROWS rows with all raw data
- *		converted to type TYPE_ID.
- *
- *		The caller must allocate the SIZE[] and BUF[] arrays but
- *		memory for the data can be allocated by either the caller or
- *		the library.  In the former case the caller should initialize
- *		the BUF[] array with pointers to valid memory and the SIZE[]
- *		array with the lengths of the buffers.  In the latter case
- *		the caller should initialize BUF[] with null pointers (the
- *		input value of SIZE[] is irrelevant in this case) and the
- *		library will allocate memory for each row by calling malloc().
- *
- * Return:	Success:	SUCCEED.  The values of the SIZE[] array will
- *				be the true length of each row.  If a row is
- *				longer than the caller-allocated length then
- *				SIZE[] will contain the true length of the
- *				row although not all elements of that row
- *				will be stored in the buffer.
- *
- *		Failure:	FAIL.  The BUF[] array will contain it's
- *				original pointers (null or otherwise)
- *				although the caller-supplied buffers may have
- *				been modified. The SIZE[] array may also be
- *				modified.
- *
- * Programmer:	Robb Matzke
- *              Tuesday, August 25, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5Rread(hid_t array_id, hssize_t start_row, hsize_t nrows,
-	hid_t type_id, hsize_t size[/*nrows*/], void *buf[/*nrows*/])
-{
-    H5R_t	*ra=NULL;
-    H5T_t	*type=NULL;
-    
-    FUNC_ENTER(H5Rread, FAIL);
-    H5TRACE6("e","iHshi*[a2]h*[a2]x",array_id,start_row,nrows,type_id,size,
-             buf);
-
-    /* Check args */
-    if (H5I_RAGGED!=H5I_get_type(array_id) ||
-	NULL==(ra=H5I_object(array_id))) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a ragged array");
-    }
-    if (H5I_DATATYPE!=H5I_get_type(type_id) ||
-	NULL==(type=H5I_object(type_id))) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data type");
-    }
-    if (nrows>0 && !size) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no size array");
-    }
-    if (nrows>0 && !buf) {
-	HRETURN_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no output buffer array");
-    }
-    
-    /* Do the work */
-    if (H5R_read(ra, start_row, nrows, type, size, buf)<0) {
-	HRETURN_ERROR(H5E_RAGGED, H5E_READERROR, FAIL,
-		      "unable to read ragged array");
-    }
-
-    FUNC_LEAVE(SUCCEED);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5R_read
- *
- * Purpose:	Reads (part of) a ragged array.  See H5Rread() for details.
- *
- * Return:	Success:	SUCCEED
- *
- *		Failure:	FAIL
- *
- * Programmer:	Robb Matzke
- *              Wednesday, August 26, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-herr_t
-H5R_read(H5R_t *ra, hssize_t start_row, hsize_t nrows, H5T_t *type,
-	 hsize_t size[], void *buf[])
-{
-    herr_t	ret_value=FAIL;
-    H5R_meta_t	*meta = NULL;
-    H5S_t	*mf_space=NULL;		/*meta file data space		*/
-    H5S_t	*mm_space=NULL;		/*meta memory data space	*/
-    H5S_t	*rf_space=NULL;		/*raw data file space		*/
-    H5S_t	*rm_space=NULL;		/*raw data memory space		*/
-    H5S_t	*of_space=NULL;		/*overflow data file space	*/
-    H5S_t	*om_space=NULL;		/*overflow data memory space	*/
-    hsize_t	meta_cur_size;		/*current meta data nelmts	*/
-    hsize_t	meta_read_size;		/*amount of meta data to read	*/
-    hsize_t	raw_cur_size[2];	/*raw data current size		*/
-    hsize_t	raw_read_size[2];	/*amount of raw data to read	*/
-    hssize_t	hs_offset[2];		/*hyperslab offset		*/
-    hsize_t	hs_size[2];		/*hyperslab size		*/
-    uint8	*raw_buf=NULL;		/*raw buffer			*/
-    size_t	type_size;		/*size of the TYPE argument	*/
-    void	**buf_out=NULL;		/*output BUF values		*/
-    hsize_t	i;			/*counter			*/
-
-    FUNC_ENTER(H5R_read, FAIL);
-
-    /* Check args */
-    assert(ra);
-    assert(type);
-    assert(0==nrows || size);
-    assert(0==nrows || buf);
-    if (0==nrows) HRETURN(SUCCEED);
-    type_size = H5T_get_size(type);
-
-    /*
-     * Malloc `buf_out' to hold the output values for `buf'.  We have to do
-     * this because if we return failure we want `buf' to have the original
-     * values.
-     */
-    if (NULL==(buf_out=H5MM_calloc(nrows*sizeof(void*)))) {
-	HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL,
-		    "memory allocation failed for BUF output values");
-    }
-    
-    /* Read from the raw dataset */
-    if (NULL==(rf_space=H5D_get_space(ra->raw)) ||
-	H5S_get_simple_extent_dims(rf_space, raw_cur_size, NULL)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-		    "unable to determine current raw data extents");
-    }
-    if ((hsize_t)start_row>=raw_cur_size[0]) {
-	raw_read_size[0] = 0;
-	raw_read_size[1] = raw_cur_size[1];
-    } else {
-	raw_read_size[0] = MIN(nrows, raw_cur_size[0]-(hsize_t)start_row);
-	raw_read_size[1] = raw_cur_size[1];
-    }
-    hs_offset[0] = start_row;
-    hs_offset[1] = 0;
-    if (NULL==(rm_space=H5S_create(H5S_SIMPLE)) ||
-	H5S_set_extent_simple(rm_space, 2, raw_read_size, NULL)<0 ||
-	H5S_select_hyperslab(rf_space, H5S_SELECT_SET, hs_offset, NULL,
-			     raw_read_size, NULL)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-		    "unable to set raw dataset selection");
-    }
-    if (NULL==(raw_buf=H5MM_malloc(nrows*raw_read_size[1]*type_size))) {
-	HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL,
-		    "memory allocation failed for raw dataset");
-    }
-    if (H5D_read(ra->raw, type, rm_space, rf_space, &H5D_xfer_dflt,
-		 raw_buf)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_READERROR, FAIL,
-		    "unable to read raw dataset");
-    }
-    HDmemset(raw_buf+raw_read_size[0]*raw_read_size[1]*type_size, 0,
-	     (nrows-raw_read_size[0])*raw_read_size[1]*type_size);
-	
-    /* Get the meta data */
-    if (NULL==(meta=H5MM_malloc(nrows*sizeof(H5R_meta_t)))) {
-	HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL,
-		    "memory allocation failed for meta data");
-    }
-    if (NULL==(mf_space=H5D_get_space(ra->meta)) ||
-	H5S_get_simple_extent_dims(mf_space, &meta_cur_size, NULL)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-		    "unable to get current meta data extents");
-    }
-    if ((hsize_t)start_row>=meta_cur_size) {
-	meta_read_size = 0;
-    } else {
-	meta_read_size = MIN(nrows, meta_cur_size-(hsize_t)start_row);
-    }
-    if (NULL==(mm_space=H5S_create(H5S_SIMPLE)) ||
-	H5S_set_extent_simple(mm_space, 1, &meta_read_size, NULL)<0 ||
-	H5S_select_hyperslab(mf_space, H5S_SELECT_SET, &start_row, NULL,
-			     &meta_read_size, NULL)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-		    "unable to set meta data selection");
-    }
-    if (H5D_read(ra->meta, H5R_meta_type_g, mm_space, mf_space,
-		 &H5D_xfer_dflt, meta)<0) {
-	HGOTO_ERROR(H5E_RAGGED, H5E_READERROR, FAIL,
-		    "unable to read meta data");
-    }
-    HDmemset(meta+meta_read_size, 0,
-	     (nrows-meta_read_size)*sizeof(H5R_meta_t));
-
-    /* Copy data into output buffers */
-    for (i=0; i<nrows; i++) {
-	/*
-	 * If the caller didn't supply a buffer then allocate a buffer large
-	 * enough to hold the entire row.  Ignore the input value for the
-	 * size and request the entire row.
-	 */
-	if (NULL==(buf_out[i]=buf[i])) {
-	    if (meta[i].nelmts>0 &&
-		NULL==(buf_out[i]=H5MM_malloc(meta[i].nelmts*type_size))) {
-		HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL,
-			    "memory allocation failed for result");
-	    }
-	    size[i] = meta[i].nelmts;
-	} else {
-	    size[i] = MIN(size[i], meta[i].nelmts);
-	}
-	if (0==size[i]) continue;
-
-	/* Copy the part of the row from the raw dataset */
-	HDmemcpy(buf_out[i], raw_buf+i*raw_read_size[1]*type_size,
-		 MIN(size[i], raw_read_size[1])*type_size);
-
-	/* Copy the part of the row from the overflow dataset */
-	if (size[i]>raw_read_size[1]) {
-	    if (!of_space && NULL==(of_space=H5D_get_space(ra->over))) {
-		HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-			    "unable to get overflow extents");
-	    }
-	    hs_size[0] = size[i]-raw_read_size[1];
-	    if (NULL==(om_space=H5S_create(H5S_SIMPLE)) ||
-		H5S_set_extent_simple(om_space, 1, size+i, NULL)<0 ||
-		H5S_select_hyperslab(om_space, H5S_SELECT_SET,
-				     (hssize_t*)(raw_read_size+1), NULL,
-				     hs_size, NULL)<0 ||
-		H5S_select_hyperslab(of_space, H5S_SELECT_SET,
-				     &(meta[i].offset), NULL, hs_size,
-				     NULL)<0) {
-		HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-			    "unable to set overflow selection");
-	    }
-	    if (H5D_read(ra->over, type, om_space, of_space, &H5D_xfer_dflt,
-			 buf_out[i])<0) {
-		HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-			    "unable to read overflow dataset");
-	    }
-	    if (H5S_close(om_space)<0) {
-		om_space = NULL;
-		HGOTO_ERROR(H5E_RAGGED, H5E_CANTINIT, FAIL,
-			    "unable to close overflow memory space");
-	    }
-	    om_space = NULL;
-	}
-
-	/* Actual row size */
-	size[i] = meta[i].nelmts;
-    }
-
-    /* Copy output buffers into BUF argument */
-    for (i=0; i<nrows; i++) buf[i] = buf_out[i];
-    ret_value = SUCCEED;
-    
- done:
-    if (rf_space) H5S_close(rf_space);
-    if (rm_space) H5S_close(rm_space);
-    if (mf_space) H5S_close(mf_space);
-    if (mm_space) H5S_close(mm_space);
-    if (of_space) H5S_close(of_space);
-    if (om_space) H5S_close(om_space);
-    H5MM_xfree(meta);
-    H5MM_xfree(raw_buf);
-    if (buf_out) {
-	for (i=0; i<nrows; i++) {
-	    if (!buf[i]) H5MM_xfree(buf_out[i]);
-	}
-	H5MM_xfree(buf_out);
-    }
-    
-    FUNC_LEAVE(ret_value);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:	H5R_entof
- *
- * Purpose:	Return a pointer to the ragged arrays symbol table entry.
- *
- * Return:	Success:	Ptr to symbol table entry
- *
- *		Failure:	NULL
- *
- * Programmer:	Robb Matzke
- *              Friday, August 28, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-H5G_entry_t *
-H5R_entof(H5R_t *ra)
-{
-    assert(ra);
-    return H5G_entof(ra->group);
-}