Hdf5 1 12 merges (#1528)

* Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

* Add support for parallel filters to h5repack (#832)

* Allow parallel filters feature for comm size of 1 (#840)

* Avoid popping API context when one wasn't pushed (#848)

* Fix several warnings (#720)

* Don't allow H5Pset(get)_all_coll_metadata_ops for DXPLs (#1201)

* Fix free list tracking and cleanup cast alignment warnings (#1288)

* Fix free list tracking and cleanup cast alignment warnings

* Add free list tracking code to H5FL 'arr' routines

* Fix usage of several HDfprintf format specifiers after HDfprintf removal (#1324)

* Use appropriate printf format specifiers for haddr_t and hsize_t types directly (#1340)

* Fix H5ACmpio dirty bytes creation debugging (#1357)

* Fix documentation for H5D_space_status_t enum values (#1372)

* Parallel rank0 deadlock fixes (#1183)

* Fix several places where rank 0 can skip past collective MPI operations on failure

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Fix a few issues noted by LGTM (#1421)

* Fix cache sanity checking code by moving functions to wider scope (#1435)

* Fix metadata cache bug when resizing a pinned/protected entry (v2) (#1463)

* Disable memory alloc sanity checks by default for Autotools debug builds (#1468)

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

1 files changed, 29 insertions, 28 deletions

diff --git a/src/H5Shyper.c b/src/H5Shyper.c
index 029adad..8f593ea 100644
--- a/src/H5Shyper.c
+++ b/src/H5Shyper.c
@@ -295,12 +295,12 @@ H5S__hyper_print_spans_helper(FILE *f, const H5S_hyper_span_t *span, unsigned de
     FUNC_ENTER_STATIC_NOERR
 
     while (span) {
-        HDfprintf(f, "%s: %*sdepth=%u, span=%p, (%Hu, %Hu), next=%p\n", FUNC, depth * 2, "", depth, span,
-                  span->low, span->high, span->next);
+        HDfprintf(f, "%s: %*sdepth=%u, span=%p, (%" PRIuHSIZE ", %" PRIuHSIZE "), next=%p\n", FUNC, depth * 2,
+                  "", depth, (void *)span, span->low, span->high, (void *)span->next);
         if (span->down) {
-            HDfprintf(f, "%s: %*sspans=%p, count=%u, bounds[0]={%Hu, %Hu}, head=%p\n", FUNC, (depth + 1) * 2,
-                      "", span->down, span->down->count, span->down->low_bounds[0],
-                      span->down->high_bounds[0], span->down->head);
+            HDfprintf(f, "%s: %*sspans=%p, count=%u, bounds[0]={%" PRIuHSIZE ", %" PRIuHSIZE "}, head=%p\n",
+                      FUNC, (depth + 1) * 2, "", (void *)span->down, span->down->count,
+                      span->down->low_bounds[0], span->down->high_bounds[0], (void *)span->down->head);
             H5S__hyper_print_spans_helper(f, span->down->head, depth + 1);
         } /* end if */
         span = span->next;
@@ -315,8 +315,9 @@ H5S__hyper_print_spans(FILE *f, const H5S_hyper_span_info_t *span_lst)
     FUNC_ENTER_STATIC_NOERR
 
     if (span_lst != NULL) {
-        HDfprintf(f, "%s: spans=%p, count=%u, bounds[0]={%Hu, %Hu}, head=%p\n", FUNC, span_lst,
-                  span_lst->count, span_lst->low_bounds[0], span_lst->high_bounds[0], span_lst->head);
+        HDfprintf(f, "%s: spans=%p, count=%u, bounds[0]={%" PRIuHSIZE ", %" PRIuHSIZE "}, head=%p\n", FUNC,
+                  (void *)span_lst, span_lst->count, span_lst->low_bounds[0], span_lst->high_bounds[0],
+                  (void *)span_lst->head);
         H5S__hyper_print_spans_helper(f, span_lst->head, 0);
     } /* end if */
 
@@ -343,16 +344,16 @@ H5S__hyper_print_diminfo_helper(FILE *f, const char *field, unsigned ndims, cons
     if (dinfo != NULL) {
         HDfprintf(f, "%s: %s: start=[", FUNC, field);
         for (u = 0; u < ndims; u++)
-            HDfprintf(f, "%Hd%s", dinfo[u].start, (u < (ndims - 1) ? ", " : "]\n"));
+            HDfprintf(f, "%" PRIuHSIZE "%s", dinfo[u].start, (u < (ndims - 1) ? ", " : "]\n"));
         HDfprintf(f, "%s: %s: stride=[", FUNC, field);
         for (u = 0; u < ndims; u++)
-            HDfprintf(f, "%Hu%s", dinfo[u].stride, (u < (ndims - 1) ? ", " : "]\n"));
+            HDfprintf(f, "%" PRIuHSIZE "%s", dinfo[u].stride, (u < (ndims - 1) ? ", " : "]\n"));
         HDfprintf(f, "%s: %s: count=[", FUNC, field);
         for (u = 0; u < ndims; u++)
-            HDfprintf(f, "%Hu%s", dinfo[u].count, (u < (ndims - 1) ? ", " : "]\n"));
+            HDfprintf(f, "%" PRIuHSIZE "%s", dinfo[u].count, (u < (ndims - 1) ? ", " : "]\n"));
         HDfprintf(f, "%s: %s: block=[", FUNC, field);
         for (u = 0; u < ndims; u++)
-            HDfprintf(f, "%Hu%s", dinfo[u].block, (u < (ndims - 1) ? ", " : "]\n"));
+            HDfprintf(f, "%" PRIuHSIZE "%s", dinfo[u].block, (u < (ndims - 1) ? ", " : "]\n"));
     } /* end if */
     else
         HDfprintf(f, "%s: %s==NULL\n", FUNC, field);
@@ -411,31 +412,31 @@ H5S__hyper_print_spans_dfs(FILE *f, const H5S_hyper_span_info_t *span_lst, unsig
 
     for (u = 0; u < depth; u++)
         HDfprintf(f, "\t");
-    HDfprintf(f, "DIM[%u]: ref_count=%u, #elems=%u, head=%p, tail=%p, actual_tail=%p, matched=%t\n", depth,
-              span_lst->count, num_elems, span_lst->head, span_lst->tail, actual_tail,
+    HDfprintf(f, "DIM[%u]: ref_count=%u, #elems=%u, head=%p, tail=%p, actual_tail=%p, matched=%d\n", depth,
+              span_lst->count, num_elems, (void *)span_lst->head, (void *)span_lst->tail, (void *)actual_tail,
               (span_lst->tail == actual_tail));
 
     for (u = 0; u < depth; u++)
         HDfprintf(f, "\t");
     HDfprintf(f, "low_bounds=[");
     for (u = 0; u < dims - 1; u++)
-        HDfprintf(f, "%llu,", span_lst->low_bounds[u]);
-    HDfprintf(f, "%llu]\n", span_lst->low_bounds[dims - 1]);
+        HDfprintf(f, "%" PRIuHSIZE ",", span_lst->low_bounds[u]);
+    HDfprintf(f, "%" PRIuHSIZE "]\n", span_lst->low_bounds[dims - 1]);
 
     for (u = 0; u < depth; u++)
         HDfprintf(f, "\t");
     HDfprintf(f, "high_bounds=[");
     for (u = 0; u < dims - 1; u++)
-        HDfprintf(f, "%llu,", span_lst->high_bounds[u]);
-    HDfprintf(f, "%llu]\n", span_lst->high_bounds[dims - 1]);
+        HDfprintf(f, "%" PRIuHSIZE ",", span_lst->high_bounds[u]);
+    HDfprintf(f, "%" PRIuHSIZE "]\n", span_lst->high_bounds[dims - 1]);
 
     cur_elem = span_lst->head;
     elem_idx = 0;
     while (cur_elem) {
         for (u = 0; u < depth; u++)
             HDfprintf(f, "\t");
-        HDfprintf(f, "ELEM[%u]: ptr=%p, low=%Hu, high=%Hu, down=%p\n", elem_idx++, cur_elem, cur_elem->low,
-                  cur_elem->high, cur_elem->down);
+        HDfprintf(f, "ELEM[%u]: ptr=%p, low=%" PRIuHSIZE ", high=%" PRIuHSIZE ", down=%p\n", elem_idx++,
+                  (void *)cur_elem, cur_elem->low, cur_elem->high, (void *)cur_elem->down);
         if (cur_elem->down)
             H5S__hyper_print_spans_dfs(f, cur_elem->down, depth + 1, dims);
         cur_elem = cur_elem->next;
@@ -472,7 +473,7 @@ H5S__hyper_print_space_dfs(FILE *f, const H5S_t *space)
     HDassert(hslab);
 
     HDfprintf(f, "=======================\n");
-    HDfprintf(f, "SPACE: span_lst=%p, #dims=%u, offset_changed=%d\n", hslab->span_lst, dims,
+    HDfprintf(f, "SPACE: span_lst=%p, #dims=%u, offset_changed=%d\n", (void *)hslab->span_lst, dims,
               space->select.offset_changed);
 
     HDfprintf(f, "       offset=[");
@@ -483,25 +484,25 @@ H5S__hyper_print_space_dfs(FILE *f, const H5S_t *space)
     HDfprintf(f, "       low_bounds=[");
     if (space->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_YES) {
         for (u = 0; u < dims - 1; u++)
-            HDfprintf(f, "%llu,", space->select.sel_info.hslab->diminfo.low_bounds[u]);
-        HDfprintf(f, "%llu]\n", space->select.sel_info.hslab->diminfo.low_bounds[dims - 1]);
+            HDfprintf(f, "%" PRIuHSIZE ",", space->select.sel_info.hslab->diminfo.low_bounds[u]);
+        HDfprintf(f, "%" PRIuHSIZE "]\n", space->select.sel_info.hslab->diminfo.low_bounds[dims - 1]);
     } /* end if */
     else {
         for (u = 0; u < dims - 1; u++)
-            HDfprintf(f, "%llu,", space->select.sel_info.hslab->span_lst->low_bounds[u]);
-        HDfprintf(f, "%llu]\n", space->select.sel_info.hslab->span_lst->low_bounds[dims - 1]);
+            HDfprintf(f, "%" PRIuHSIZE ",", space->select.sel_info.hslab->span_lst->low_bounds[u]);
+        HDfprintf(f, "%" PRIuHSIZE "]\n", space->select.sel_info.hslab->span_lst->low_bounds[dims - 1]);
     } /* end else */
 
     HDfprintf(f, "       high_bounds=[");
     if (space->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_YES) {
         for (u = 0; u < dims - 1; u++)
-            HDfprintf(f, "%llu,", space->select.sel_info.hslab->diminfo.high_bounds[u]);
-        HDfprintf(f, "%llu]\n", space->select.sel_info.hslab->diminfo.high_bounds[dims - 1]);
+            HDfprintf(f, "%" PRIuHSIZE ",", space->select.sel_info.hslab->diminfo.high_bounds[u]);
+        HDfprintf(f, "%" PRIuHSIZE "]\n", space->select.sel_info.hslab->diminfo.high_bounds[dims - 1]);
     } /* end if */
     else {
         for (u = 0; u < dims - 1; u++)
-            HDfprintf(f, "%llu,", space->select.sel_info.hslab->span_lst->high_bounds[u]);
-        HDfprintf(f, "%llu]\n", space->select.sel_info.hslab->span_lst->high_bounds[dims - 1]);
+            HDfprintf(f, "%" PRIuHSIZE ",", space->select.sel_info.hslab->span_lst->high_bounds[u]);
+        HDfprintf(f, "%" PRIuHSIZE "]\n", space->select.sel_info.hslab->span_lst->high_bounds[dims - 1]);
     } /* end else */
 
     /* Print out diminfo, if it's valid */