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author | Dana Robinson <derobins@hdfgroup.org> | 2015-09-30 02:36:46 (GMT) |
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committer | Dana Robinson <derobins@hdfgroup.org> | 2015-09-30 02:36:46 (GMT) |
commit | a89b064e2bd8fb81e39a930209114cfae4fcd141 (patch) | |
tree | 1b3c3b218a4e054ee998429982b7dff840304c16 /src/H5Shyper.c | |
parent | 5c0a8cc86ebe85e1b46e20f253f09c86bdc83169 (diff) | |
parent | fbd659fe6feba18f9fd4f931535a6603ccbf763d (diff) | |
download | hdf5-a89b064e2bd8fb81e39a930209114cfae4fcd141.zip hdf5-a89b064e2bd8fb81e39a930209114cfae4fcd141.tar.gz hdf5-a89b064e2bd8fb81e39a930209114cfae4fcd141.tar.bz2 |
[svn-r27916] Re-merge of r27884-27891 from the trunk + bugfix for a few
H5S recursive functions where an aliased pointer was
incorrectly set too early.
Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) w/ gcc 4.9.2
serial and parallel (w/ MPICH 3.1.4)
Diffstat (limited to 'src/H5Shyper.c')
-rw-r--r-- | src/H5Shyper.c | 95 |
1 files changed, 53 insertions, 42 deletions
diff --git a/src/H5Shyper.c b/src/H5Shyper.c index 1a4e4f5..28cabf0 100644 --- a/src/H5Shyper.c +++ b/src/H5Shyper.c @@ -2014,14 +2014,14 @@ H5S_hyper_serial_size(const H5S_t *space) PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_hyper_serialize_helper(spans, start, end, rank, buf) + void H5S_hyper_serialize_helper(spans, start, end, rank, buf) H5S_hyper_span_info_t *spans; IN: Hyperslab span tree to serialize hssize_t start[]; IN/OUT: Accumulated start points hssize_t end[]; IN/OUT: Accumulated end points hsize_t rank; IN: Current rank looking at uint8 *buf; OUT: Buffer to put serialized selection into RETURNS - Non-negative on success/Negative on failure + <none> DESCRIPTION Serializes the current element selection into a buffer. (Primarily for storing on disk). @@ -2030,13 +2030,13 @@ H5S_hyper_serial_size(const H5S_t *space) EXAMPLES REVISION LOG --------------------------------------------------------------------------*/ -static herr_t -H5S_hyper_serialize_helper (const H5S_hyper_span_info_t *spans, +static void +H5S_hyper_serialize_helper(const H5S_hyper_span_info_t *spans, hsize_t *start, hsize_t *end, hsize_t rank, uint8_t **p) { H5S_hyper_span_t *curr; /* Pointer to current hyperslab span */ + uint8_t *pp = (*p); /* Local pointer for decoding */ hsize_t u; /* Index variable */ - herr_t ret_value=SUCCEED; /* return value */ FUNC_ENTER_NOAPI_NOINIT @@ -2045,7 +2045,7 @@ H5S_hyper_serialize_helper (const H5S_hyper_span_info_t *spans, HDassert(start); HDassert(end); HDassert(rank < H5O_LAYOUT_NDIMS); - HDassert(p && *p); + HDassert(p && pp); /* Walk through the list of spans, recursing or outputing them */ curr=spans->head; @@ -2057,33 +2057,34 @@ H5S_hyper_serialize_helper (const H5S_hyper_span_info_t *spans, end[rank]=curr->high; /* Recurse down to the next dimension */ - if(H5S_hyper_serialize_helper(curr->down,start,end,rank+1,p)<0) - HGOTO_ERROR(H5E_INTERNAL, H5E_CANTFREE, FAIL, "failed to release hyperslab spans") + H5S_hyper_serialize_helper(curr->down, start, end, rank + 1, &pp); } /* end if */ else { /* Encode all the previous dimensions starting & ending points */ /* Encode previous starting points */ for(u=0; u<rank; u++) - UINT32ENCODE(*p, (uint32_t)start[u]); + UINT32ENCODE(pp, (uint32_t)start[u]); /* Encode starting point for this span */ - UINT32ENCODE(*p, (uint32_t)curr->low); + UINT32ENCODE(pp, (uint32_t)curr->low); /* Encode previous ending points */ for(u=0; u<rank; u++) - UINT32ENCODE(*p, (uint32_t)end[u]); + UINT32ENCODE(pp, (uint32_t)end[u]); /* Encode starting point for this span */ - UINT32ENCODE(*p, (uint32_t)curr->high); + UINT32ENCODE(pp, (uint32_t)curr->high); } /* end else */ /* Advance to next node */ curr=curr->next; } /* end while */ -done: - FUNC_LEAVE_NOAPI(ret_value) + /* Update encoding pointer */ + *p = pp; + + FUNC_LEAVE_NOAPI_VOID } /* H5S_hyper_serialize_helper() */ @@ -2109,9 +2110,10 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_hyper_serialize (const H5S_t *space, uint8_t **p) +H5S_hyper_serialize(const H5S_t *space, uint8_t **p) { const H5S_hyper_dim_t *diminfo; /* Alias for dataspace's diminfo information */ + uint8_t *pp = (*p); /* Local pointer for decoding */ hsize_t tmp_count[H5O_LAYOUT_NDIMS]; /* Temporary hyperslab counts */ hsize_t offset[H5O_LAYOUT_NDIMS]; /* Offset of element in dataspace */ hsize_t start[H5O_LAYOUT_NDIMS]; /* Location of start of hyperslab */ @@ -2129,6 +2131,8 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t **p) FUNC_ENTER_NOAPI_NOINIT_NOERR HDassert(space); + HDassert(p); + HDassert(pp); /* Calculate version */ if(space->select.sel_info.hslab->unlim_dim >= 0) { @@ -2139,17 +2143,17 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t **p) version = 1; /* Store the preamble information */ - UINT32ENCODE(*p, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(*p, version); /* Store the version number */ + UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(pp, version); /* Store the version number */ if(version >= 2) - *(*p)++ = flags; /* Store the flags */ + *(pp)++ = flags; /* Store the flags */ else - UINT32ENCODE(*p, (uint32_t)0); /* Store the un-used padding */ - lenp = *p; /* keep the pointer to the length location for later */ - *p += 4; /* skip over space for length */ + UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ + lenp = pp; /* keep the pointer to the length location for later */ + pp += 4; /* skip over space for length */ /* Encode number of dimensions */ - UINT32ENCODE(*p, (uint32_t)space->extent.rank); + UINT32ENCODE(pp, (uint32_t)space->extent.rank); len += 4; /* If there is an unlimited dimension, only encode opt_unlim_diminfo */ @@ -2161,10 +2165,10 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t **p) /* Iterate over dimensions */ for(i = 0; i < space->extent.rank; i++) { /* Encode start/stride/block/count */ - UINT64ENCODE(*p, space->select.sel_info.hslab->opt_diminfo[i].start); - UINT64ENCODE(*p, space->select.sel_info.hslab->opt_diminfo[i].stride); - UINT64ENCODE(*p, space->select.sel_info.hslab->opt_diminfo[i].count); - UINT64ENCODE(*p, space->select.sel_info.hslab->opt_diminfo[i].block); + UINT64ENCODE(pp, space->select.sel_info.hslab->opt_diminfo[i].start); + UINT64ENCODE(pp, space->select.sel_info.hslab->opt_diminfo[i].stride); + UINT64ENCODE(pp, space->select.sel_info.hslab->opt_diminfo[i].count); + UINT64ENCODE(pp, space->select.sel_info.hslab->opt_diminfo[i].block); } /* end for */ } /* end if */ /* Check for a "regular" hyperslab selection */ @@ -2182,7 +2186,7 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t **p) /* Encode number of hyperslabs */ H5_CHECK_OVERFLOW(block_count, hsize_t, uint32_t); - UINT32ENCODE(*p, (uint32_t)block_count); + UINT32ENCODE(pp, (uint32_t)block_count); len+=4; /* Now serialize the information for the regular hyperslab */ @@ -2205,11 +2209,11 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t **p) /* Encode hyperslab starting location */ for(u = 0; u < ndims; u++) - UINT32ENCODE(*p, (uint32_t)offset[u]); + UINT32ENCODE(pp, (uint32_t)offset[u]); /* Encode hyperslab ending location */ for(u = 0; u < ndims; u++) - UINT32ENCODE(*p, (uint32_t)(offset[u] + (diminfo[u].block - 1))); + UINT32ENCODE(pp, (uint32_t)(offset[u] + (diminfo[u].block - 1))); /* Move the offset to the next sequence to start */ offset[fast_dim]+=diminfo[fast_dim].stride; @@ -2260,7 +2264,7 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t **p) /* Encode number of hyperslabs */ block_count = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst); H5_CHECK_OVERFLOW(block_count, hsize_t, uint32_t); - UINT32ENCODE(*p, (uint32_t)block_count); + UINT32ENCODE(pp, (uint32_t)block_count); len+=4; /* Add 8 bytes times the rank for each hyperslab selected */ @@ -2268,12 +2272,15 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t **p) len += (uint32_t)(8 * space->extent.rank * block_count); /* Encode each hyperslab in selection */ - H5S_hyper_serialize_helper(space->select.sel_info.hslab->span_lst, start, end, (hsize_t)0, p); + H5S_hyper_serialize_helper(space->select.sel_info.hslab->span_lst, start, end, (hsize_t)0, &pp); } /* end else */ /* Encode length */ UINT32ENCODE(lenp, (uint32_t)len); /* Store the length of the extra information */ + /* Update encoding pointer */ + *p = pp; + FUNC_LEAVE_NOAPI(SUCCEED) } /* H5S_hyper_serialize() */ @@ -2307,6 +2314,7 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla const uint8_t **p) { unsigned rank; /* rank of points */ + const uint8_t *pp = (*p); /* Local pointer for decoding */ size_t num_elem=0; /* number of elements in selection */ hsize_t start[H5O_LAYOUT_NDIMS]; /* hyperslab start information */ hsize_t end[H5O_LAYOUT_NDIMS]; /* hyperslab end information */ @@ -2326,7 +2334,7 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla /* Check args */ HDassert(space); HDassert(p); - HDassert(*p); + HDassert(pp); /* Deserialize slabs to select */ /* (The header and rank have already beed decoded) */ @@ -2340,10 +2348,10 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla /* Iterate over dimensions */ for(i = 0; i < space->extent.rank; i++) { /* Decode start/stride/block/count */ - UINT64DECODE(*p, start[i]); - UINT64DECODE(*p, stride[i]); - UINT64DECODE(*p, count[i]); - UINT64DECODE(*p, block[i]); + UINT64DECODE(pp, start[i]); + UINT64DECODE(pp, stride[i]); + UINT64DECODE(pp, count[i]); + UINT64DECODE(pp, block[i]); } /* end for */ /* Select the hyperslab to the current selection */ @@ -2352,23 +2360,23 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla } /* end if */ else { /* decode the number of points */ - UINT32DECODE(*p,num_elem); + UINT32DECODE(pp,num_elem); /* Set the count & stride for all blocks */ - for(tcount=count,tstride=stride,j=0; j<rank; j++,tstride++,tcount++) { + for(tcount = count, tstride = stride, j = 0; j < rank; j++, tstride++, tcount++) { *tcount=1; *tstride=1; } /* end for */ /* Retrieve the coordinates from the buffer */ - for(i=0; i<num_elem; i++) { + for(i = 0; i < num_elem; i++) { /* Decode the starting points */ for(tstart=start,j=0; j<rank; j++,tstart++) - UINT32DECODE(*p, *tstart); + UINT32DECODE(pp, *tstart); /* Decode the ending points */ - for(tend=end,j=0; j<rank; j++,tend++) - UINT32DECODE(*p, *tend); + for(tend = end, j = 0; j < rank; j++, tend++) + UINT32DECODE(pp, *tend); /* Change the ending points into blocks */ for(tblock=block,tstart=start,tend=end,j=0; j<rank; j++,tstart++,tend++,tblock++) @@ -2380,6 +2388,9 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla } /* end for */ } /* end else */ + /* Update decoding pointer */ + *p = pp; + done: FUNC_LEAVE_NOAPI(ret_value) } /* H5S_hyper_deserialize() */ |