[svn-r1204] Changes since 19990415

----------------------

./config/depend.in
	Fixed automatic dependencies. We were storing dependencies for
	*.o files instead of *.lo files after shared libraries were
	added.

./config/gnu-flags
./config/linux-gnulibc1
	Moved `-march=pentiumpro -mcpu=pentiumpro -malign-double' from
	the linux file to this file and caused it to depend on the CPU
	name.  This fixes one of Elena's bugs.

./src/H5B.c
./src/H5Bprivate.h
./src/H5D.c
./src/H5Dprivate.h
./src/H5Dpublic.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fistore.c
./src/H5Fmpio.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Gnode.c
./src/H5P.c
./src/H5RA.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Smpio.c
./src/H5Spoint.c
./src/H5Sprivate.h
./src/H5Tpublic.h
./test/istore.c
	Added an H5Dget_storage_size() function that reports the
	amount of storage allocated for raw data in a dataset.

	Changed H5D_xfer_* to H5F_xfer_* because these properties are
	more general than datasets. This also allows some of the
	lower-level I/O functions to get this information easier.

./src/H5S.c
./src/H5Sall.c
	Added two new functions H5S_all_read() and H5S_all_write()
	which are optimizations that copy data directly between file
	and memory without having to go through the scatter gather
	step.  This knocks quite a bit of time off the I/O and
	reading/writing entire datasets is a fairly common operation.

./tools/h5ls.c
	Reports the logical size of data, the allocated size of data,
	and the percent utilization.

./MANIFEST
	Removed old pablo files, added new files. Snapshots should now
	start to work again.

./src/H5D.c
./src/H5Fmpio.c
	Removed two warnings signed vs. unsigned comparisons and check
	for overflow.

1 files changed, 20 insertions, 8 deletions

diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h
index 2710d9d..ff0a021 100644
--- a/src/H5Sprivate.h
+++ b/src/H5Sprivate.h
@@ -194,7 +194,7 @@ typedef struct H5S_fconv_t {
 		   const struct H5O_fill_t *fill,
 		   const struct H5O_efl_t *efl, size_t elmt_size,
 		   const H5S_t *file_space, H5S_sel_iter_t *file_iter,
-		   size_t nelmts, const struct H5D_xfer_t *xfer_parms,
+		   size_t nelmts, const struct H5F_xfer_t *xfer_parms,
 		   void *tconv_buf/*out*/);
 
     /* Scatter elements from type conversion buffer to disk */
@@ -203,7 +203,7 @@ typedef struct H5S_fconv_t {
 		   const struct H5O_fill_t *fill,
 		   const struct H5O_efl_t *efl, size_t elmt_size,
 		   const H5S_t *file_space, H5S_sel_iter_t *file_iter,
-		   size_t nelmts, const struct H5D_xfer_t *xfer_parms,
+		   size_t nelmts, const struct H5F_xfer_t *xfer_parms,
 		   const void *tconv_buf);
 } H5S_fconv_t;
 
@@ -253,8 +253,8 @@ typedef struct H5S_conv_t {
 		   const struct H5O_pline_t *pline,
 		   const struct H5O_efl_t *efl, size_t elmt_size,
 		   const H5S_t *file_space, const H5S_t *mem_space,
-		   const H5D_transfer_t xfer_mode, void *buf/*out*/,
-		   hbool_t *must_convert/*out*/ );
+		   const H5F_xfer_t *xfer_parms, void *buf/*out*/,
+		   hbool_t *must_convert/*out*/);
 
 
     /* Write directly from app buffer to file */
@@ -262,8 +262,8 @@ typedef struct H5S_conv_t {
 		    const struct H5O_pline_t *pline,
 		    const struct H5O_efl_t *efl, size_t elmt_size,
 		    const H5S_t *file_space, const H5S_t *mem_space,
-		    const H5D_transfer_t xfer_mode, const void *buf,
-		    hbool_t *must_convert/*out*/ );
+		    const H5F_xfer_t *xfer_parms, const void *buf,
+		    hbool_t *must_convert/*out*/);
     
 #ifdef H5S_DEBUG
     struct {
@@ -352,6 +352,18 @@ __DLL__ hsize_t H5S_all_npoints(const H5S_t *space);
 __DLL__ herr_t H5S_all_select_serialize(const H5S_t *space, uint8_t *buf);
 __DLL__ herr_t H5S_all_select_deserialize(H5S_t *space, const uint8_t *buf);
 __DLL__ herr_t H5S_all_bounds(H5S_t *space, hsize_t *start, hsize_t *end);
+__DLL__ herr_t H5S_all_read(H5F_t *f, const struct H5O_layout_t *layout,
+			    const struct H5O_pline_t *pline,
+			    const struct H5O_efl_t *efl, size_t elmt_size,
+			    const H5S_t *file_space, const H5S_t *mem_space,
+			    const H5F_xfer_t *xfer_parms, void *buf/*out*/,
+			    hbool_t *must_convert/*out*/);
+__DLL__ herr_t H5S_all_write(H5F_t *f, const struct H5O_layout_t *layout,
+			     const struct H5O_pline_t *pline,
+			     const struct H5O_efl_t *efl, size_t elmt_size,
+			     const H5S_t *file_space, const H5S_t *mem_space,
+			     const H5F_xfer_t *xfer_parms, const void *buf,
+			     hbool_t *must_convert/*out*/);
 
 /* Hyperslab selection functions */
 __DLL__ herr_t H5S_hyper_add(H5S_t *space, const hssize_t *start,
@@ -386,7 +398,7 @@ __DLL__ herr_t H5S_mpio_spaces_read(H5F_t *f,
 				    const struct H5O_efl_t *efl,
 				    size_t elmt_size, const H5S_t *file_space,
 				    const H5S_t *mem_space,
-				    const H5D_transfer_t xfer_mode,
+				    const H5F_xfer_t *xfer_parms,
 				    void *buf/*out*/,
 				    hbool_t *must_convert /*out*/ );
 
@@ -397,7 +409,7 @@ __DLL__ herr_t H5S_mpio_spaces_write(H5F_t *f,
 				     const struct H5O_efl_t *efl,
 				     size_t elmt_size, const H5S_t *file_space,
 				     const H5S_t *mem_space,
-				     const H5D_transfer_t xfer_mode,
+				     const H5F_xfer_t *xfer_parms,
 				     const void *buf,
 				     hbool_t *must_convert /*out*/ );
 #ifndef _H5S_IN_H5S_C