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authorQuincey Koziol <koziol@hdfgroup.org>2018-04-29 08:04:21 (GMT)
committerQuincey Koziol <koziol@hdfgroup.org>2018-04-29 08:04:21 (GMT)
commit01f196b31a03f072b685f998b0805c1f90322c2b (patch)
tree6e1cae004705ade1c870e4c6612a76b55be3c331 /src/H5Z.c
parentda4b69097756158fdbfcbf52b5b552e2034d263d (diff)
parentb3c5284692093953132c6c8227e0980b670bf4ad (diff)
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Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_hyperslab_updates
Diffstat (limited to 'src/H5Z.c')
-rw-r--r--src/H5Z.c1340
1 files changed, 631 insertions, 709 deletions
diff --git a/src/H5Z.c b/src/H5Z.c
index f601039..f68fbce 100644
--- a/src/H5Z.c
+++ b/src/H5Z.c
@@ -5,28 +5,27 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
- * the files COPYING and Copyright.html. COPYING can be found at the root *
- * of the source code distribution tree; Copyright.html can be found at the *
- * root level of an installed copy of the electronic HDF5 document set and *
- * is linked from the top-level documents page. It can also be found at *
- * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
- * access to either file, you may request a copy from help@hdfgroup.org. *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include "H5Zmodule.h" /* This source code file is part of the H5Z module */
-#include "H5private.h" /* Generic Functions */
-#include "H5Dprivate.h" /* Dataset functions */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5Fprivate.h" /* File */
-#include "H5Iprivate.h" /* IDs */
-#include "H5MMprivate.h" /* Memory management */
-#include "H5Oprivate.h" /* Object headers */
-#include "H5Pprivate.h" /* Property lists */
-#include "H5PLprivate.h" /* Plugins */
-#include "H5Sprivate.h" /* Dataspace functions */
-#include "H5Zpkg.h" /* Data filters */
+#include "H5private.h" /* Generic Functions */
+#include "H5CXprivate.h" /* API Contexts */
+#include "H5Dprivate.h" /* Dataset functions */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5Fprivate.h" /* File */
+#include "H5Iprivate.h" /* IDs */
+#include "H5MMprivate.h" /* Memory management */
+#include "H5Oprivate.h" /* Object headers */
+#include "H5Pprivate.h" /* Property lists */
+#include "H5PLprivate.h" /* Plugins */
+#include "H5Sprivate.h" /* Dataspace functions */
+#include "H5Zpkg.h" /* Data filters */
#ifdef H5_HAVE_SZLIB_H
# include "szlib.h"
@@ -36,16 +35,19 @@
#ifdef H5Z_DEBUG
typedef struct H5Z_stats_t {
struct {
- hsize_t total; /*total number of bytes processed */
- hsize_t errors; /*bytes of total attributable to errors */
- H5_timer_t timer; /*execution time including errors */
- } stats[2]; /*0=output, 1=input */
+ hsize_t total; /* total number of bytes processed */
+ hsize_t errors; /* bytes of total attributable to errors */
+ H5_timer_t timer; /* execution time including errors */
+ } stats[2]; /* 0=output, 1=input */
} H5Z_stats_t;
#endif /* H5Z_DEBUG */
typedef struct H5Z_object_t {
- H5Z_filter_t filter_id; /* ID of the filter we're looking for */
- htri_t found; /* Whether we find an object using the filter */
+ H5Z_filter_t filter_id; /* ID of the filter we're looking for */
+ htri_t found; /* Whether we find an object using the filter */
+#ifdef H5_HAVE_PARALLEL
+ hbool_t sanity_checked; /* Whether the sanity check for collectively calling H5Zunregister has been done */
+#endif /* H5_HAVE_PARALLEL */
} H5Z_object_t;
/* Enumerated type for dataset creation prelude callbacks */
@@ -58,11 +60,11 @@ typedef enum {
hbool_t H5_PKG_INIT_VAR = FALSE;
/* Local variables */
-static size_t H5Z_table_alloc_g = 0;
-static size_t H5Z_table_used_g = 0;
-static H5Z_class2_t *H5Z_table_g = NULL;
+static size_t H5Z_table_alloc_g = 0;
+static size_t H5Z_table_used_g = 0;
+static H5Z_class2_t *H5Z_table_g = NULL;
#ifdef H5Z_DEBUG
-static H5Z_stats_t *H5Z_stat_table_g = NULL;
+static H5Z_stats_t *H5Z_stat_table_g = NULL;
#endif /* H5Z_DEBUG */
/* Local functions */
@@ -73,15 +75,11 @@ static int H5Z__flush_file_cb(void *obj_ptr, hid_t obj_id, void *key);
/*-------------------------------------------------------------------------
- * Function: H5Z__init_package
+ * Function: H5Z__init_package
*
- * Purpose: Initializes the data filter layer.
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Robb Matzke
- * Thursday, April 16, 1998
+ * Purpose: Initializes the data filter layer.
*
+ * Return: Non-negative on success/Negative on failure
*-------------------------------------------------------------------------
*/
herr_t
@@ -92,24 +90,24 @@ H5Z__init_package(void)
FUNC_ENTER_PACKAGE
/* Internal filters */
- if(H5Z_register(H5Z_SHUFFLE) < 0)
+ if (H5Z_register(H5Z_SHUFFLE) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register shuffle filter")
- if(H5Z_register(H5Z_FLETCHER32) < 0)
+ if (H5Z_register(H5Z_FLETCHER32) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register fletcher32 filter")
- if(H5Z_register(H5Z_NBIT) < 0)
+ if (H5Z_register(H5Z_NBIT) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register nbit filter")
- if(H5Z_register(H5Z_SCALEOFFSET) < 0)
+ if (H5Z_register(H5Z_SCALEOFFSET) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register scaleoffset filter")
/* External filters */
#ifdef H5_HAVE_FILTER_DEFLATE
- if(H5Z_register(H5Z_DEFLATE) < 0)
- HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register deflate filter")
+ if (H5Z_register(H5Z_DEFLATE) < 0)
+ HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register deflate filter")
#endif /* H5_HAVE_FILTER_DEFLATE */
#ifdef H5_HAVE_FILTER_SZIP
H5Z_SZIP->encoder_present = SZ_encoder_enabled();
- if(H5Z_register(H5Z_SZIP) < 0)
- HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register szip filter")
+ if (H5Z_register(H5Z_SZIP) < 0)
+ HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register szip filter")
#endif /* H5_HAVE_FILTER_SZIP */
done:
@@ -118,21 +116,17 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_term_package
- *
- * Purpose: Terminate the H5Z layer.
+ * Function: H5Z_term_package
*
- * Return: void
- *
- * Programmer: Robb Matzke
- * Thursday, April 16, 1998
+ * Purpose: Terminate the H5Z layer.
*
+ * Return: void
*-------------------------------------------------------------------------
*/
int
H5Z_term_package(void)
{
- int n = 0;
+ int n = 0;
FUNC_ENTER_NOAPI_NOINIT_NOERR
@@ -142,55 +136,55 @@ H5Z_term_package(void)
int dir, nprint = 0;
size_t i;
- if(H5DEBUG(Z)) {
- for(i = 0; i < H5Z_table_used_g; i++) {
- for(dir = 0; dir<2; dir++) {
- if(0 == H5Z_stat_table_g[i].stats[dir].total)
+ if(H5DEBUG(Z)) {
+ for(i = 0; i < H5Z_table_used_g; i++) {
+ for(dir = 0; dir<2; dir++) {
+ if(0 == H5Z_stat_table_g[i].stats[dir].total)
continue;
- if(0 == nprint++) {
- /* Print column headers */
- HDfprintf(H5DEBUG(Z), "H5Z: filter statistics "
- "accumulated over life of library:\n");
- HDfprintf(H5DEBUG(Z),
- " %-16s %10s %10s %8s %8s %8s %10s\n",
- "Filter", "Total", "Errors", "User",
- "System", "Elapsed", "Bandwidth");
- HDfprintf(H5DEBUG(Z),
- " %-16s %10s %10s %8s %8s %8s %10s\n",
- "------", "-----", "------", "----",
- "------", "-------", "---------");
- } /* end if */
-
- /* Truncate the comment to fit in the field */
- HDstrncpy(comment, H5Z_table_g[i].name, sizeof comment);
- comment[sizeof(comment) - 1] = '\0';
-
- /*
- * Format bandwidth to have four significant digits and
- * units of `B/s', `kB/s', `MB/s', `GB/s', or `TB/s' or
- * the word `Inf' if the elapsed time is zero.
- */
- H5_bandwidth(bandwidth,
- (double)(H5Z_stat_table_g[i].stats[dir].total),
- H5Z_stat_table_g[i].stats[dir].timer.etime);
-
- /* Print the statistics */
- HDfprintf(H5DEBUG(Z),
- " %s%-15s %10Hd %10Hd %8.2f %8.2f %8.2f "
- "%10s\n", dir?"<":">", comment,
- H5Z_stat_table_g[i].stats[dir].total,
- H5Z_stat_table_g[i].stats[dir].errors,
- H5Z_stat_table_g[i].stats[dir].timer.utime,
- H5Z_stat_table_g[i].stats[dir].timer.stime,
- H5Z_stat_table_g[i].stats[dir].timer.etime,
- bandwidth);
- } /* end for */
- } /* end for */
- } /* end if */
+ if(0 == nprint++) {
+ /* Print column headers */
+ HDfprintf(H5DEBUG(Z), "H5Z: filter statistics "
+ "accumulated over life of library:\n");
+ HDfprintf(H5DEBUG(Z),
+ " %-16s %10s %10s %8s %8s %8s %10s\n",
+ "Filter", "Total", "Errors", "User",
+ "System", "Elapsed", "Bandwidth");
+ HDfprintf(H5DEBUG(Z),
+ " %-16s %10s %10s %8s %8s %8s %10s\n",
+ "------", "-----", "------", "----",
+ "------", "-------", "---------");
+ } /* end if */
+
+ /* Truncate the comment to fit in the field */
+ HDstrncpy(comment, H5Z_table_g[i].name, sizeof comment);
+ comment[sizeof(comment) - 1] = '\0';
+
+ /*
+ * Format bandwidth to have four significant digits and
+ * units of `B/s', `kB/s', `MB/s', `GB/s', or `TB/s' or
+ * the word `Inf' if the elapsed time is zero.
+ */
+ H5_bandwidth(bandwidth,
+ (double)(H5Z_stat_table_g[i].stats[dir].total),
+ H5Z_stat_table_g[i].stats[dir].timer.etime);
+
+ /* Print the statistics */
+ HDfprintf(H5DEBUG(Z),
+ " %s%-15s %10Hd %10Hd %8.2f %8.2f %8.2f "
+ "%10s\n", dir?"<":">", comment,
+ H5Z_stat_table_g[i].stats[dir].total,
+ H5Z_stat_table_g[i].stats[dir].errors,
+ H5Z_stat_table_g[i].stats[dir].timer.utime,
+ H5Z_stat_table_g[i].stats[dir].timer.stime,
+ H5Z_stat_table_g[i].stats[dir].timer.etime,
+ bandwidth);
+ } /* end for */
+ } /* end for */
+ } /* end if */
#endif /* H5Z_DEBUG */
- /* Free the table of filters */
- if(H5Z_table_g) {
+ /* Free the table of filters */
+ if (H5Z_table_g) {
H5Z_table_g = (H5Z_class2_t *)H5MM_xfree(H5Z_table_g);
#ifdef H5Z_DEBUG
H5Z_stat_table_g = (H5Z_stats_t *)H5MM_xfree(H5Z_stat_table_g);
@@ -200,8 +194,8 @@ H5Z_term_package(void)
n++;
} /* end if */
- /* Mark interface as closed */
- if(0 == n)
+ /* Mark interface as closed */
+ if (0 == n)
H5_PKG_INIT_VAR = FALSE;
} /* end if */
@@ -210,34 +204,26 @@ H5Z_term_package(void)
/*-------------------------------------------------------------------------
- * Function: H5Zregister
- *
- * Purpose: This function registers new filter.
+ * Function: H5Zregister
*
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Robb Matzke
- * Thursday, April 16, 1998
- *
- * Modifications:
- * Changed to pass in H5Z_class_t struct
- * Quincey Koziol, April 5, 2003
+ * Purpose: This function registers new filter.
*
+ * Return: Non-negative on success/Negative on failure
*-------------------------------------------------------------------------
*/
herr_t
H5Zregister(const void *cls)
{
const H5Z_class2_t *cls_real = (const H5Z_class2_t *) cls; /* "Real" class pointer */
- H5Z_class2_t cls_new; /* Translated class struct */
- herr_t ret_value=SUCCEED; /* Return value */
+ H5Z_class2_t cls_new; /* Translated class struct */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("e", "*x", cls);
/* Check args */
if (cls_real==NULL)
- HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "invalid filter class")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid filter class")
/* Check H5Z_class_t version number; this is where a function to convert
* from an outdated version should be called.
@@ -249,7 +235,7 @@ H5Zregister(const void *cls)
* at least 256, there should be no overlap and the version of the struct
* can be determined by the value of the first field.
*/
- if(cls_real->version != H5Z_CLASS_T_VERS) {
+ if (cls_real->version != H5Z_CLASS_T_VERS) {
#ifndef H5_NO_DEPRECATED_SYMBOLS
/* Assume it is an old "H5Z_class1_t" instead */
const H5Z_class1_t *cls_old = (const H5Z_class1_t *) cls;
@@ -273,16 +259,16 @@ H5Zregister(const void *cls)
#endif /* H5_NO_DEPRECATED_SYMBOLS */
} /* end if */
- if (cls_real->id<0 || cls_real->id>H5Z_FILTER_MAX)
- HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "invalid filter identification number")
- if (cls_real->id<H5Z_FILTER_RESERVED)
- HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "unable to modify predefined filters")
- if (cls_real->filter==NULL)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no filter function specified")
+ if (cls_real->id < 0 || cls_real->id > H5Z_FILTER_MAX)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid filter identification number")
+ if (cls_real->id < H5Z_FILTER_RESERVED)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "unable to modify predefined filters")
+ if (cls_real->filter == NULL)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no filter function specified")
/* Do it */
- if (H5Z_register (cls_real)<0)
- HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register filter")
+ if (H5Z_register(cls_real) < 0)
+ HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register filter")
done:
FUNC_LEAVE_API(ret_value)
@@ -290,25 +276,20 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_register
- *
- * Purpose: Same as the public version except this one allows filters
- * to be set for predefined method numbers <H5Z_FILTER_RESERVED
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Robb Matzke
- * Thursday, April 16, 1998
+ * Function: H5Z_register
*
- * Modifications:
+ * Purpose: Same as the public version except this one allows filters
+ * to be set for predefined method numbers < H5Z_FILTER_RESERVED
*
+ * Return: Non-negative on success
+ * Negative on failure
*-------------------------------------------------------------------------
*/
herr_t
H5Z_register (const H5Z_class2_t *cls)
{
- size_t i;
- herr_t ret_value = SUCCEED; /* Return value */
+ size_t i;
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
@@ -316,40 +297,40 @@ H5Z_register (const H5Z_class2_t *cls)
HDassert(cls->id >= 0 && cls->id <= H5Z_FILTER_MAX);
/* Is the filter already registered? */
- for(i = 0; i < H5Z_table_used_g; i++)
- if(H5Z_table_g[i].id == cls->id)
+ for (i = 0; i < H5Z_table_used_g; i++)
+ if (H5Z_table_g[i].id == cls->id)
break;
/* Filter not already registered */
- if(i >= H5Z_table_used_g) {
- if(H5Z_table_used_g >= H5Z_table_alloc_g) {
- size_t n = MAX(H5Z_MAX_NFILTERS, 2*H5Z_table_alloc_g);
- H5Z_class2_t *table = (H5Z_class2_t *)H5MM_realloc(H5Z_table_g, n * sizeof(H5Z_class2_t));
+ if (i >= H5Z_table_used_g) {
+ if (H5Z_table_used_g >= H5Z_table_alloc_g) {
+ size_t n = MAX(H5Z_MAX_NFILTERS, 2 * H5Z_table_alloc_g);
+ H5Z_class2_t *table = (H5Z_class2_t *)H5MM_realloc(H5Z_table_g, n * sizeof(H5Z_class2_t));
#ifdef H5Z_DEBUG
- H5Z_stats_t *stat_table = (H5Z_stats_t *)H5MM_realloc(H5Z_stat_table_g, n * sizeof(H5Z_stats_t));
+ H5Z_stats_t *stat_table = (H5Z_stats_t *)H5MM_realloc(H5Z_stat_table_g, n * sizeof(H5Z_stats_t));
#endif /* H5Z_DEBUG */
- if(!table)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "unable to extend filter table")
- H5Z_table_g = table;
+ if (!table)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "unable to extend filter table")
+ H5Z_table_g = table;
#ifdef H5Z_DEBUG
- if(!stat_table)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "unable to extend filter statistics table")
- H5Z_stat_table_g = stat_table;
+ if (!stat_table)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "unable to extend filter statistics table")
+ H5Z_stat_table_g = stat_table;
#endif /* H5Z_DEBUG */
- H5Z_table_alloc_g = n;
- } /* end if */
+ H5Z_table_alloc_g = n;
+ } /* end if */
- /* Initialize */
- i = H5Z_table_used_g++;
- HDmemcpy(H5Z_table_g+i, cls, sizeof(H5Z_class2_t));
+ /* Initialize */
+ i = H5Z_table_used_g++;
+ HDmemcpy(H5Z_table_g+i, cls, sizeof(H5Z_class2_t));
#ifdef H5Z_DEBUG
- HDmemset(H5Z_stat_table_g+i, 0, sizeof(H5Z_stats_t));
+ HDmemset(H5Z_stat_table_g+i, 0, sizeof(H5Z_stats_t));
#endif /* H5Z_DEBUG */
} /* end if */
/* Filter already registered */
else {
- /* Replace old contents */
- HDmemcpy(H5Z_table_g+i, cls, sizeof(H5Z_class2_t));
+ /* Replace old contents */
+ HDmemcpy(H5Z_table_g+i, cls, sizeof(H5Z_class2_t));
} /* end else */
done:
@@ -358,34 +339,31 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Zunregister
- *
- * Purpose: This function unregisters a filter.
- *
- * Return: Non-negative on success/Negative on failure
+ * Function: H5Zunregister
*
- * Programmer: Quincey Koziol
- * Thursday, November 14, 2002
+ * Purpose: This function unregisters a filter.
*
+ * Return: Non-negative on success
+ * Negative on failure
*-------------------------------------------------------------------------
*/
herr_t
H5Zunregister(H5Z_filter_t id)
{
- herr_t ret_value=SUCCEED; /* Return value */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("e", "Zf", id);
/* Check args */
- if(id < 0 || id > H5Z_FILTER_MAX)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid filter identification number")
- if(id < H5Z_FILTER_RESERVED)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "unable to modify predefined filters")
+ if (id < 0 || id > H5Z_FILTER_MAX)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid filter identification number")
+ if (id < H5Z_FILTER_RESERVED)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "unable to modify predefined filters")
/* Do it */
- if(H5Z_unregister(id) < 0)
- HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to unregister filter")
+ if(H5Z__unregister(id) < 0)
+ HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to unregister filter")
done:
FUNC_LEAVE_API(ret_value)
@@ -393,84 +371,80 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_unregister
- *
- * Purpose: Same as the public version except this one allows filters
- * to be unset for predefined method numbers <H5Z_FILTER_RESERVED
- *
- * Return: Non-negative on success/Negative on failure
+ * Function: H5Z__unregister
*
- * Programmer: Quincey Koziol
- * Thursday, November 14, 2002
+ * Purpose: Same as the public version except this one allows filters
+ * to be unset for predefined method numbers <H5Z_FILTER_RESERVED
*
+ * Return: Non-negative on success
+ * Negative on failure
*-------------------------------------------------------------------------
*/
herr_t
-H5Z_unregister(H5Z_filter_t filter_id)
+H5Z__unregister(H5Z_filter_t filter_id)
{
- size_t filter_index; /* Local index variable for filter */
- H5Z_object_t object;
- herr_t ret_value=SUCCEED; /* Return value */
+ size_t filter_index; /* Local index variable for filter */
+ H5Z_object_t object; /* Object to pass to callbacks */
+ herr_t ret_value = SUCCEED; /* Return value */
- FUNC_ENTER_NOAPI(FAIL)
+ FUNC_ENTER_PACKAGE_VOL
HDassert(filter_id>=0 && filter_id<=H5Z_FILTER_MAX);
/* Is the filter already registered? */
- for (filter_index=0; filter_index<H5Z_table_used_g; filter_index++)
- if (H5Z_table_g[filter_index].id==filter_id)
+ for (filter_index = 0; filter_index < H5Z_table_used_g; filter_index++)
+ if (H5Z_table_g[filter_index].id == filter_id)
break;
/* Fail if filter not found */
- if (filter_index>=H5Z_table_used_g)
+ if (filter_index >= H5Z_table_used_g)
HGOTO_ERROR(H5E_PLINE, H5E_NOTFOUND, FAIL, "filter is not registered")
/* Initialize the structure object for iteration */
object.filter_id = filter_id;
object.found = FALSE;
+#ifdef H5_HAVE_PARALLEL
+ object.sanity_checked = FALSE;
+#endif /* H5_HAVE_PARALLEL */
/* Iterate through all opened datasets, returns a failure if any of them uses the filter */
- if(H5I_iterate(H5I_DATASET, H5Z__check_unregister_dset_cb, &object, FALSE) < 0)
+ if (H5I_iterate(H5I_DATASET, H5Z__check_unregister_dset_cb, &object, FALSE) < 0)
HGOTO_ERROR(H5E_FILE, H5E_BADITER, FAIL, "iteration failed")
- if(object.found)
+ if (object.found)
HGOTO_ERROR(H5E_PLINE, H5E_CANTRELEASE, FAIL, "can't unregister filter because a dataset is still using it")
/* Iterate through all opened groups, returns a failure if any of them uses the filter */
- if(H5I_iterate(H5I_GROUP, H5Z__check_unregister_group_cb, &object, FALSE) < 0)
+ if (H5I_iterate(H5I_GROUP, H5Z__check_unregister_group_cb, &object, FALSE) < 0)
HGOTO_ERROR(H5E_FILE, H5E_BADITER, FAIL, "iteration failed")
- if(object.found)
+ if (object.found)
HGOTO_ERROR(H5E_PLINE, H5E_CANTRELEASE, FAIL, "can't unregister filter because a group is still using it")
/* Iterate through all opened files and flush them */
- if(H5I_iterate(H5I_FILE, H5Z__flush_file_cb, NULL, FALSE) < 0)
+ if (H5I_iterate(H5I_FILE, H5Z__flush_file_cb, &object, FALSE) < 0)
HGOTO_ERROR(H5E_FILE, H5E_BADITER, FAIL, "iteration failed")
/* Remove filter from table */
/* Don't worry about shrinking table size (for now) */
- HDmemmove(&H5Z_table_g[filter_index],&H5Z_table_g[filter_index+1],sizeof(H5Z_class2_t)*((H5Z_table_used_g-1)-filter_index));
+ HDmemmove(&H5Z_table_g[filter_index], &H5Z_table_g[filter_index+1], sizeof(H5Z_class2_t)*((H5Z_table_used_g-1)-filter_index));
#ifdef H5Z_DEBUG
- HDmemmove(&H5Z_stat_table_g[filter_index],&H5Z_stat_table_g[filter_index+1],sizeof(H5Z_stats_t)*((H5Z_table_used_g-1)-filter_index));
+ HDmemmove(&H5Z_stat_table_g[filter_index], &H5Z_stat_table_g[filter_index+1], sizeof(H5Z_stats_t)*((H5Z_table_used_g-1)-filter_index));
#endif /* H5Z_DEBUG */
H5Z_table_used_g--;
done:
- FUNC_LEAVE_NOAPI(ret_value)
-} /* end H5Z_unregister() */
+ FUNC_LEAVE_NOAPI_VOL(ret_value)
+} /* end H5Z__unregister() */
/*-------------------------------------------------------------------------
- * Function: H5Z__check_unregister
+ * Function: H5Z__check_unregister
*
- * Purpose: Check if an object uses the filter to be unregistered.
- *
- * Return: TRUE if the object uses the filter.
- * FALSE if not, NEGATIVE on error.
- *
- * Programmer: Quincey Koziol
- * 11 May 2013
+ * Purpose: Check if an object uses the filter to be unregistered.
*
+ * Return: TRUE if the object uses the filter.
+ * FALSE if not, NEGATIVE on error.
*-------------------------------------------------------------------------
*/
static htri_t
@@ -482,11 +456,11 @@ H5Z__check_unregister(hid_t ocpl_id, H5Z_filter_t filter_id)
FUNC_ENTER_STATIC
/* Get the plist structure of object creation */
- if(NULL == (plist = H5P_object_verify(ocpl_id, H5P_OBJECT_CREATE)))
+ if (NULL == (plist = H5P_object_verify(ocpl_id, H5P_OBJECT_CREATE)))
HGOTO_ERROR(H5E_PLINE, H5E_BADATOM, FAIL, "can't find object for ID")
/* Check if the object creation property list uses the filter */
- if((ret_value = H5P_filter_in_pline(plist, filter_id)) < 0)
+ if ((ret_value = H5P_filter_in_pline(plist, filter_id)) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTGET, FAIL, "can't check filter in pipeline")
done:
@@ -495,19 +469,15 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z__check_unregister_group_cb
- *
- * Purpose: The callback function for H5Z_unregister. It iterates
- * through all opened objects. If the object is a dataset
- * or a group and it uses the filter to be unregistered, the
- * function returns TRUE.
- *
- * Return: TRUE if the object uses the filter.
- * FALSE otherwise.
+ * Function: H5Z__check_unregister_group_cb
*
- * Programmer: Raymond Lu
- * 6 May 2013
+ * Purpose: The callback function for H5Z__unregister. It iterates
+ * through all opened objects. If the object is a dataset
+ * or a group and it uses the filter to be unregistered, the
+ * function returns TRUE.
*
+ * Return: TRUE if the object uses the filter.
+ * FALSE otherwise.
*-------------------------------------------------------------------------
*/
static int
@@ -523,24 +493,24 @@ H5Z__check_unregister_group_cb(void *obj_ptr, hid_t H5_ATTR_UNUSED obj_id, void
HDassert(obj_ptr);
/* Get the group creation property */
- if((ocpl_id = H5G_get_create_plist((H5G_t *)obj_ptr)) < 0)
+ if((ocpl_id = H5G_get_create_plist((H5G_t *)obj_ptr)) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTGET, FAIL, "can't get group creation property list")
/* Check if the filter is in the group creation property list */
- if((filter_in_pline = H5Z__check_unregister(ocpl_id, object->filter_id)) < 0)
+ if ((filter_in_pline = H5Z__check_unregister(ocpl_id, object->filter_id)) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTGET, FAIL, "can't check filter in pipeline")
/* H5I_iterate expects TRUE to stop the loop over objects. Stop the loop and
- * let H5Z_unregister return failure.
- */
- if(filter_in_pline) {
+ * let H5Z__unregister return failure.
+ */
+ if (filter_in_pline) {
object->found = TRUE;
ret_value = TRUE;
} /* end if */
done:
- if(ocpl_id > 0)
- if(H5I_dec_app_ref(ocpl_id) < 0)
+ if (ocpl_id > 0)
+ if (H5I_dec_app_ref(ocpl_id) < 0)
HDONE_ERROR(H5E_PLINE, H5E_CANTDEC, FAIL, "can't release plist")
FUNC_LEAVE_NOAPI(ret_value)
@@ -548,19 +518,15 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z__check_unregister_dset_cb
- *
- * Purpose: The callback function for H5Z_unregister. It iterates
- * through all opened objects. If the object is a dataset
- * or a group and it uses the filter to be unregistered, the
- * function returns TRUE.
+ * Function: H5Z__check_unregister_dset_cb
*
- * Return: TRUE if the object uses the filter.
- * FALSE otherwise.
- *
- * Programmer: Raymond Lu
- * 6 May 2013
+ * Purpose: The callback function for H5Z__unregister. It iterates
+ * through all opened objects. If the object is a dataset
+ * or a group and it uses the filter to be unregistered, the
+ * function returns TRUE.
*
+ * Return: TRUE if the object uses the filter.
+ * FALSE otherwise.
*-------------------------------------------------------------------------
*/
static int
@@ -576,24 +542,24 @@ H5Z__check_unregister_dset_cb(void *obj_ptr, hid_t H5_ATTR_UNUSED obj_id, void *
HDassert(obj_ptr);
/* Get the dataset creation property */
- if((ocpl_id = H5D_get_create_plist((H5D_t *)obj_ptr)) < 0)
+ if ((ocpl_id = H5D_get_create_plist((H5D_t *)obj_ptr)) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTGET, FAIL, "can't get dataset creation property list")
/* Check if the filter is in the dataset creation property list */
- if((filter_in_pline = H5Z__check_unregister(ocpl_id, object->filter_id)) < 0)
+ if ((filter_in_pline = H5Z__check_unregister(ocpl_id, object->filter_id)) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTGET, FAIL, "can't check filter in pipeline")
/* H5I_iterate expects TRUE to stop the loop over objects. Stop the loop and
- * let H5Z_unregister return failure.
- */
- if(filter_in_pline) {
+ * let H5Z__unregister return failure.
+ */
+ if (filter_in_pline) {
object->found = TRUE;
ret_value = TRUE;
} /* end if */
done:
- if(ocpl_id > 0)
- if(H5I_dec_app_ref(ocpl_id) < 0)
+ if (ocpl_id > 0)
+ if (H5I_dec_app_ref(ocpl_id) < 0)
HDONE_ERROR(H5E_PLINE, H5E_CANTDEC, FAIL, "can't release plist")
FUNC_LEAVE_NOAPI(ret_value)
@@ -601,32 +567,68 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z__flush_file_cb
+ * Function: H5Z__flush_file_cb
*
- * Purpose: The callback function for H5Z_unregister. It iterates
- * through all opened files and flush them.
- *
- * Return: FALSE if finishes flushing and moves on
- * FAIL if there is an error
- *
- * Programmer: Raymond Lu
- * 6 May 2013
+ * Purpose: The callback function for H5Z__unregister. It iterates
+ * through all opened files and flush them.
*
+ * Return: FALSE if finishes flushing and moves on
+ * FAIL if there is an error
*-------------------------------------------------------------------------
*/
static int
-H5Z__flush_file_cb(void *obj_ptr, hid_t H5_ATTR_UNUSED obj_id, void H5_ATTR_UNUSED *key)
+H5Z__flush_file_cb(void *obj_ptr, hid_t H5_ATTR_UNUSED obj_id, void *key)
{
- int ret_value = FALSE; /* Return value */
+ H5F_t *f = (H5F_t *)obj_ptr; /* File object for operations */
+ H5Z_object_t *object = (H5Z_object_t *)key;
+ int ret_value = FALSE; /* Return value */
FUNC_ENTER_STATIC
- HDassert(obj_ptr);
+ /* Sanity checks */
+ HDassert(f);
+ HDassert(object);
+
+ /* Do a global flush if the file is opened for write */
+ if(H5F_ACC_RDWR & H5F_INTENT(f)) {
+
+/* When parallel HDF5 is defined, check for collective metadata reads on this
+ * file and set the flag for metadata I/O in the API context. -QAK, 2018/02/14
+ */
+#ifdef H5_HAVE_PARALLEL
+ /* Check if MPIO driver is used */
+ if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) {
+ H5P_coll_md_read_flag_t coll_md_read; /* Do all metadata reads collectively */
+
+ /* Sanity check for collectively calling H5Zunregister, if requested */
+ /* (Sanity check assumes that a barrier on one file's comm
+ * is sufficient (i.e. that there aren't different comms for
+ * different files). -QAK, 2018/02/14
+ */
+ if(H5_coll_api_sanity_check_g && !object->sanity_checked) {
+ MPI_Comm mpi_comm; /* File's communicator */
+
+ /* Retrieve the file communicator */
+ if(MPI_COMM_NULL == (mpi_comm = H5F_mpi_get_comm(f)))
+ HGOTO_ERROR(H5E_PLINE, H5E_CANTGET, FAIL, "can't get MPI communicator")
+
+ /* Issue the barrier */
+ if(mpi_comm != MPI_COMM_NULL)
+ MPI_Barrier(mpi_comm);
+
+ /* Set the "sanity checked" flag */
+ object->sanity_checked = TRUE;
+ } /* end if */
- /* Call the flush routine for mounted file hierarchies. Do a global flush
- * if the file is opened for write */
- if(H5F_ACC_RDWR & H5F_INTENT((H5F_t *)obj_ptr)) {
- if(H5F_flush_mounts((H5F_t *)obj_ptr, H5AC_ind_read_dxpl_id, H5AC_rawdata_dxpl_id) < 0)
+ /* Check whether to use the collective metadata read DXPL */
+ coll_md_read = H5F_COLL_MD_READ(f);
+ if(H5P_USER_TRUE == coll_md_read)
+ H5CX_set_coll_metadata_read(TRUE);
+ } /* end if */
+#endif /* H5_HAVE_PARALLEL */
+
+ /* Call the flush routine for mounted file hierarchies */
+ if(H5F_flush_mounts((H5F_t *)obj_ptr) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTFLUSH, FAIL, "unable to flush file hierarchy")
} /* end if */
@@ -636,39 +638,27 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Zfilter_avail
- *
- * Purpose: Check if a filter is available
- *
- * Return: Non-negative (TRUE/FALSE) on success/Negative on failure
+ * Function: H5Zfilter_avail
*
- * Programmer: Quincey Koziol
- * Thursday, November 14, 2002
- *
- * Modifications:
+ * Purpose: Check if a filter is available
*
+ * Return: Non-negative (TRUE/FALSE) on success/Negative on failure
*-------------------------------------------------------------------------
*/
htri_t
H5Zfilter_avail(H5Z_filter_t id)
{
- htri_t ret_value=FALSE; /* Return value */
+ htri_t ret_value = FALSE; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("t", "Zf", id);
/* Check args */
- if(id<0 || id>H5Z_FILTER_MAX)
- HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "invalid filter identification number")
-
- if((ret_value = H5Z_filter_avail(id)) < 0)
- HGOTO_ERROR(H5E_PLINE, H5E_NOTFOUND, FAIL, "unable to check the availability of the filter")
- else if(ret_value == FALSE) {
- const H5Z_class2_t *filter_info;
-
- if(NULL != (filter_info = (const H5Z_class2_t *)H5PL_load(H5PL_TYPE_FILTER, (int)id)))
- ret_value = TRUE;
- } /* end if */
+ if (id < 0 || id > H5Z_FILTER_MAX)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid filter identification number")
+
+ if ((ret_value = H5Z_filter_avail(id)) < 0)
+ HGOTO_ERROR(H5E_PLINE, H5E_NOTFOUND, FAIL, "unable to check the availability of the filter")
done:
FUNC_LEAVE_API(ret_value)
@@ -676,29 +666,34 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_filter_avail
- *
- * Purpose: Private function to check if a filter is available
+ * Function: H5Z_filter_avail
*
- * Return: Non-negative (TRUE/FALSE) on success/Negative on failure
- *
- * Programmer: Raymond Lu
- * 13 February 2013
+ * Purpose: Private function to check if a filter is available
*
+ * Return: Non-negative (TRUE/FALSE) on success/Negative on failure
*-------------------------------------------------------------------------
*/
htri_t
H5Z_filter_avail(H5Z_filter_t id)
{
- size_t i; /* Local index variable */
- htri_t ret_value = FALSE; /* Return value */
+ H5PL_key_t key; /* Key for finding a plugin */
+ const H5Z_class2_t *filter_info; /* Filter information */
+ size_t i; /* Local index variable */
+ htri_t ret_value = FALSE; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Is the filter already registered? */
- for(i = 0; i < H5Z_table_used_g; i++)
- if(H5Z_table_g[i].id == id)
- HGOTO_DONE(TRUE)
+ for (i = 0; i < H5Z_table_used_g; i++)
+ if (H5Z_table_g[i].id == id)
+ HGOTO_DONE(TRUE)
+
+ key.id = (int)id;
+ if (NULL != (filter_info = (const H5Z_class2_t *)H5PL_load(H5PL_TYPE_FILTER, key))) {
+ if (H5Z_register(filter_info) < 0)
+ HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register loaded filter")
+ HGOTO_DONE(TRUE)
+ }
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -706,21 +701,16 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_prelude_callback
- *
- * Purpose: Makes a dataset creation "prelude" callback for the "can_apply"
- * or "set_local" routines.
- *
- * Return: Non-negative on success/Negative on failure
+ * Function: H5Z_prelude_callback
*
- * Programmer: Quincey Koziol
- * Friday, April 4, 2003
+ * Purpose: Makes a dataset creation "prelude" callback for the "can_apply"
+ * or "set_local" routines.
*
- * Notes:
- * The chunk dimensions are used to create a dataspace, instead
- * of passing in the dataset's dataspace, since the chunk
- * dimensions are what the I/O filter will actually see
+ * Return: Non-negative on success/Negative on failure
*
+ * Notes: The chunk dimensions are used to create a dataspace, instead
+ * of passing in the dataset's dataspace, since the chunk
+ * dimensions are what the I/O filter will actually see
*-------------------------------------------------------------------------
*/
static herr_t
@@ -729,52 +719,52 @@ H5Z_prelude_callback(const H5O_pline_t *pline, hid_t dcpl_id, hid_t type_id,
{
H5Z_class2_t *fclass; /* Individual filter information */
size_t u; /* Local index variable */
- htri_t ret_value = TRUE; /* Return value */
+ htri_t ret_value = TRUE; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
HDassert(pline->nused > 0);
/* Iterate over filters */
- for(u = 0; u < pline->nused; u++) {
+ for (u = 0; u < pline->nused; u++) {
/* Get filter information */
- if(NULL == (fclass = H5Z_find(pline->filter[u].id))) {
+ if (NULL == (fclass = H5Z_find(pline->filter[u].id))) {
/* Ignore errors from optional filters */
- if(pline->filter[u].flags & H5Z_FLAG_OPTIONAL)
- H5E_clear_stack(NULL);
+ if (pline->filter[u].flags & H5Z_FLAG_OPTIONAL)
+ H5E_clear_stack (NULL);
else
HGOTO_ERROR(H5E_PLINE, H5E_NOTFOUND, FAIL, "required filter was not located")
} /* end if */
else {
/* Make correct callback */
- switch(prelude_type) {
+ switch (prelude_type) {
case H5Z_PRELUDE_CAN_APPLY:
/* Check if filter is configured to be able to encode */
- if(!fclass->encoder_present)
+ if (!fclass->encoder_present)
HGOTO_ERROR(H5E_PLINE, H5E_NOENCODER, FAIL, "Filter present but encoding is disabled.");
/* Check if there is a "can apply" callback */
- if(fclass->can_apply) {
+ if (fclass->can_apply) {
/* Make callback to filter's "can apply" function */
htri_t status = (fclass->can_apply)(dcpl_id, type_id, space_id);
/* Indicate error during filter callback */
- if(status < 0)
+ if (status < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANAPPLY, FAIL, "error during user callback")
- /* Indicate filter can't apply to this combination of parameters.
+ /* Indicate filter can't apply to this combination of parameters.
* If the filter is NOT optional, returns failure. */
- if(status == FALSE && !(pline->filter[u].flags & H5Z_FLAG_OPTIONAL))
+ if (status == FALSE && !(pline->filter[u].flags & H5Z_FLAG_OPTIONAL))
HGOTO_ERROR(H5E_PLINE, H5E_CANAPPLY, FAIL, "filter parameters not appropriate")
} /* end if */
break;
case H5Z_PRELUDE_SET_LOCAL:
/* Check if there is a "set local" callback */
- if(fclass->set_local) {
+ if (fclass->set_local) {
/* Make callback to filter's "set local" function */
- if((fclass->set_local)(dcpl_id, type_id, space_id) < 0)
+ if ((fclass->set_local)(dcpl_id, type_id, space_id) < 0)
/* Indicate error during filter callback */
HGOTO_ERROR(H5E_PLINE, H5E_SETLOCAL, FAIL, "error during user callback")
} /* end if */
@@ -793,28 +783,24 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_prepare_prelude_callback_dcpl
+ * Function: H5Z_prepare_prelude_callback_dcpl
*
- * Purpose: Prepares to make a dataset creation "prelude" callback
- * for the "can_apply" or "set_local" routines.
+ * Purpose: Prepares to make a dataset creation "prelude" callback
+ * for the "can_apply" or "set_local" routines.
*
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Quincey Koziol
- * Friday, April 4, 2003
- *
- * Notes:
- * The chunk dimensions are used to create a dataspace, instead
- * of passing in the dataset's dataspace, since the chunk
- * dimensions are what the I/O filter will actually see
+ * Return: Non-negative on success/Negative on failure
*
+ * Notes: The chunk dimensions are used to create a dataspace, instead
+ * of passing in the dataset's dataspace, since the chunk
+ * dimensions are what the I/O filter will actually see
*-------------------------------------------------------------------------
*/
static herr_t
H5Z_prepare_prelude_callback_dcpl(hid_t dcpl_id, hid_t type_id, H5Z_prelude_type_t prelude_type)
{
- hid_t space_id = -1; /* ID for dataspace describing chunk */
- herr_t ret_value = SUCCEED; /* Return value */
+ hid_t space_id = -1; /* ID for dataspace describing chunk */
+ H5O_layout_t *dcpl_layout = NULL; /* Dataset's layout information */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
@@ -822,76 +808,78 @@ H5Z_prepare_prelude_callback_dcpl(hid_t dcpl_id, hid_t type_id, H5Z_prelude_type
HDassert(H5I_DATATYPE == H5I_get_type(type_id));
/* Check if the property list is non-default */
- if(dcpl_id != H5P_DATASET_CREATE_DEFAULT) {
- H5P_genplist_t *dc_plist; /* Dataset creation property list object */
- H5O_layout_t dcpl_layout; /* Dataset's layout information */
+ if (dcpl_id != H5P_DATASET_CREATE_DEFAULT) {
+ H5P_genplist_t *dc_plist; /* Dataset creation property list object */
+
+ /* Get memory for the layout */
+ if (NULL == (dcpl_layout = (H5O_layout_t *)H5MM_calloc(sizeof(H5O_layout_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "unable to allocate dcpl layout buffer")
/* Get dataset creation property list object */
- if(NULL == (dc_plist = (H5P_genplist_t *)H5I_object(dcpl_id)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get dataset creation property list")
+ if (NULL == (dc_plist = (H5P_genplist_t *)H5I_object(dcpl_id)))
+ HGOTO_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "can't get dataset creation property list")
/* Peek at the layout information */
- if(H5P_peek(dc_plist, H5D_CRT_LAYOUT_NAME, &dcpl_layout) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't retrieve layout")
+ if (H5P_peek(dc_plist, H5D_CRT_LAYOUT_NAME, dcpl_layout) < 0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "can't retrieve layout")
/* Check if the dataset is chunked */
- if(H5D_CHUNKED == dcpl_layout.type) {
+ if (H5D_CHUNKED == dcpl_layout->type) {
H5O_pline_t dcpl_pline; /* Object's I/O pipeline information */
/* Get I/O pipeline information */
- if(H5P_peek(dc_plist, H5O_CRT_PIPELINE_NAME, &dcpl_pline) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't retrieve pipeline filter")
+ if (H5P_peek(dc_plist, H5O_CRT_PIPELINE_NAME, &dcpl_pline) < 0)
+ HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "can't retrieve pipeline filter")
/* Check if the chunks have filters */
- if(dcpl_pline.nused > 0) {
+ if (dcpl_pline.nused > 0) {
hsize_t chunk_dims[H5O_LAYOUT_NDIMS]; /* Size of chunk dimensions */
- H5S_t *space; /* Dataspace describing chunk */
- size_t u; /* Local index variable */
+ H5S_t *space; /* Dataspace describing chunk */
+ size_t u; /* Local index variable */
/* Create a dataspace for a chunk & set the extent */
- for(u = 0; u < dcpl_layout.u.chunk.ndims; u++)
- chunk_dims[u] = dcpl_layout.u.chunk.dim[u];
- if(NULL == (space = H5S_create_simple(dcpl_layout.u.chunk.ndims, chunk_dims, NULL)))
+ for(u = 0; u < dcpl_layout->u.chunk.ndims; u++)
+ chunk_dims[u] = dcpl_layout->u.chunk.dim[u];
+ if(NULL == (space = H5S_create_simple(dcpl_layout->u.chunk.ndims, chunk_dims, NULL)))
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "can't create simple dataspace")
/* Get ID for dataspace to pass to filter routines */
- if((space_id = H5I_register(H5I_DATASPACE, space, FALSE)) < 0) {
+ if ((space_id = H5I_register(H5I_DATASPACE, space, FALSE)) < 0) {
(void)H5S_close(space);
- HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register dataspace ID")
- } /* end if */
+ HGOTO_ERROR (H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register dataspace ID")
+ }
/* Make the callbacks */
- if(H5Z_prelude_callback(&dcpl_pline, dcpl_id, type_id, space_id, prelude_type) < 0)
- HGOTO_ERROR(H5E_PLINE, H5E_CANAPPLY, FAIL, "unable to apply filter")
- } /* end if */
- } /* end if */
- } /* end if */
+ if (H5Z_prelude_callback(&dcpl_pline, dcpl_id, type_id, space_id, prelude_type) < 0)
+ HGOTO_ERROR (H5E_PLINE, H5E_CANAPPLY, FAIL, "unable to apply filter")
+ }
+ }
+ }
done:
- if(space_id > 0 && H5I_dec_ref(space_id) < 0)
+ if (space_id > 0 && H5I_dec_ref(space_id) < 0)
HDONE_ERROR(H5E_PLINE, H5E_CANTRELEASE, FAIL, "unable to close dataspace")
+ if (dcpl_layout)
+ dcpl_layout = (H5O_layout_t *)H5MM_xfree(dcpl_layout);
+
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5Z_prepare_prelude_callback_dcpl() */
/*-------------------------------------------------------------------------
- * Function: H5Z_can_apply
- *
- * Purpose: Checks if all the filters defined in the dataset creation
- * property list can be applied to a particular combination of
- * datatype and dataspace for a dataset.
- *
- * Return: Non-negative on success/Negative on failure
+ * Function: H5Z_can_apply
*
- * Programmer: Quincey Koziol
- * Thursday, April 3, 2003
+ * Purpose: Checks if all the filters defined in the dataset creation
+ * property list can be applied to a particular combination of
+ * datatype and dataspace for a dataset.
*
- * Notes:
- * The chunk dimensions are used to create a dataspace, instead
- * of passing in the dataset's dataspace, since the chunk
- * dimensions are what the I/O filter will actually see
+ * Return: Non-negative on success
+ * Negative on failure
*
+ * Notes: The chunk dimensions are used to create a dataspace, instead
+ * of passing in the dataset's dataspace, since the chunk
+ * dimensions are what the I/O filter will actually see
*-------------------------------------------------------------------------
*/
herr_t
@@ -902,7 +890,7 @@ H5Z_can_apply(hid_t dcpl_id, hid_t type_id)
FUNC_ENTER_NOAPI(FAIL)
/* Make "can apply" callbacks for filters in pipeline */
- if(H5Z_prepare_prelude_callback_dcpl(dcpl_id, type_id, H5Z_PRELUDE_CAN_APPLY) < 0)
+ if (H5Z_prepare_prelude_callback_dcpl(dcpl_id, type_id, H5Z_PRELUDE_CAN_APPLY) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANAPPLY, FAIL, "unable to apply filter")
done:
@@ -911,22 +899,18 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_set_local
+ * Function: H5Z_set_local
*
- * Purpose: Makes callbacks to modify dataset creation list property
- * settings for filters on a new dataset, based on the datatype
- * and dataspace of that dataset (chunk).
+ * Purpose: Makes callbacks to modify dataset creation list property
+ * settings for filters on a new dataset, based on the datatype
+ * and dataspace of that dataset (chunk).
*
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Quincey Koziol
- * Friday, April 4, 2003
- *
- * Notes:
- * The chunk dimensions are used to create a dataspace, instead
- * of passing in the dataset's dataspace, since the chunk
- * dimensions are what the I/O filter will actually see
+ * Return: Non-negative on success
+ * Negative on failure
*
+ * Notes: The chunk dimensions are used to create a dataspace, instead
+ * of passing in the dataset's dataspace, since the chunk
+ * dimensions are what the I/O filter will actually see
*-------------------------------------------------------------------------
*/
herr_t
@@ -937,7 +921,7 @@ H5Z_set_local(hid_t dcpl_id, hid_t type_id)
FUNC_ENTER_NOAPI(FAIL)
/* Make "set local" callbacks for filters in pipeline */
- if(H5Z_prepare_prelude_callback_dcpl(dcpl_id, type_id, H5Z_PRELUDE_SET_LOCAL) < 0)
+ if (H5Z_prepare_prelude_callback_dcpl(dcpl_id, type_id, H5Z_PRELUDE_SET_LOCAL) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_SETLOCAL, FAIL, "local filter parameters not set")
done:
@@ -946,17 +930,14 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_can_apply_direct
- *
- * Purpose: Checks if all the filters defined in the pipeline can be
- * applied to an opaque byte stream (currently only a group).
- * The pipeline is assumed to have at least one filter.
+ * Function: H5Z_can_apply_direct
*
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Neil Fortner
- * Tuesday, September 22, 2009
+ * Purpose: Checks if all the filters defined in the pipeline can be
+ * applied to an opaque byte stream (currently only a group).
+ * The pipeline is assumed to have at least one filter.
*
+ * Return: Non-negative on success
+ * Negative on failure
*-------------------------------------------------------------------------
*/
herr_t
@@ -969,7 +950,7 @@ H5Z_can_apply_direct(const H5O_pline_t *pline)
HDassert(pline->nused > 0);
/* Make "can apply" callbacks for filters in pipeline */
- if(H5Z_prelude_callback(pline, (hid_t)-1, (hid_t)-1, (hid_t)-1, H5Z_PRELUDE_CAN_APPLY) < 0)
+ if (H5Z_prelude_callback(pline, (hid_t)-1, (hid_t)-1, (hid_t)-1, H5Z_PRELUDE_CAN_APPLY) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANAPPLY, FAIL, "unable to apply filter")
done:
@@ -978,22 +959,18 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_set_local_direct
- *
- * Purpose: Makes callbacks to modify local settings for filters on a
- * new opaque object. The pipeline is assumed to have at
- * least one filter.
+ * Function: H5Z_set_local_direct
*
- * Return: Non-negative on success/Negative on failure
+ * Purpose: Makes callbacks to modify local settings for filters on a
+ * new opaque object. The pipeline is assumed to have at
+ * least one filter.
*
- * Programmer: Neil Fortner
- * Tuesday, September 22, 2009
- *
- * Notes:
- * This callback will almost certainly not do anything
- * useful, other than to make certain that the filter will
- * accept opque data.
+ * Return: Non-negative on success
+ * Negative on failure
*
+ * Notes: This callback will almost certainly not do anything
+ * useful, other than to make certain that the filter will
+ * accept opaque data.
*-------------------------------------------------------------------------
*/
herr_t
@@ -1006,7 +983,7 @@ H5Z_set_local_direct(const H5O_pline_t *pline)
HDassert(pline->nused > 0);
/* Make "set local" callbacks for filters in pipeline */
- if(H5Z_prelude_callback(pline, (hid_t)-1, (hid_t)-1, (hid_t)-1, H5Z_PRELUDE_SET_LOCAL) < 0)
+ if (H5Z_prelude_callback(pline, (hid_t)-1, (hid_t)-1, (hid_t)-1, H5Z_PRELUDE_SET_LOCAL) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_SETLOCAL, FAIL, "local filter parameters not set")
done:
@@ -1015,25 +992,20 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_modify
- *
- * Purpose: Modify filter parameters for specified pipeline.
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Quincey Koziol
- * Friday, April 5, 2003
+ * Function: H5Z_modify
*
- * Modifications:
+ * Purpose: Modify filter parameters for specified pipeline.
*
+ * Return: Non-negative on success
+ * Negative on failure
*-------------------------------------------------------------------------
*/
herr_t
H5Z_modify(const H5O_pline_t *pline, H5Z_filter_t filter, unsigned flags,
- size_t cd_nelmts, const unsigned int cd_values[/*cd_nelmts*/])
+ size_t cd_nelmts, const unsigned int cd_values[/*cd_nelmts*/])
{
- size_t idx; /* Index of filter in pipeline */
- herr_t ret_value = SUCCEED; /* Return value */
+ size_t idx; /* Index of filter in pipeline */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
@@ -1043,38 +1015,38 @@ H5Z_modify(const H5O_pline_t *pline, H5Z_filter_t filter, unsigned flags,
HDassert(0 == cd_nelmts || cd_values);
/* Locate the filter in the pipeline */
- for(idx = 0; idx < pline->nused; idx++)
- if(pline->filter[idx].id == filter)
+ for (idx = 0; idx < pline->nused; idx++)
+ if (pline->filter[idx].id == filter)
break;
/* Check if the filter was not already in the pipeline */
- if(idx > pline->nused)
- HGOTO_ERROR(H5E_PLINE, H5E_NOTFOUND, FAIL, "filter not in pipeline")
+ if (idx > pline->nused)
+ HGOTO_ERROR(H5E_PLINE, H5E_NOTFOUND, FAIL, "filter not in pipeline")
/* Change parameters for filter */
pline->filter[idx].flags = flags;
pline->filter[idx].cd_nelmts = cd_nelmts;
/* Free any existing parameters */
- if(pline->filter[idx].cd_values != NULL && pline->filter[idx].cd_values != pline->filter[idx]._cd_values)
- H5MM_xfree(pline->filter[idx].cd_values);
+ if (pline->filter[idx].cd_values != NULL && pline->filter[idx].cd_values != pline->filter[idx]._cd_values)
+ H5MM_xfree(pline->filter[idx].cd_values);
/* Set parameters */
- if(cd_nelmts > 0) {
- size_t i; /* Local index variable */
+ if (cd_nelmts > 0) {
+ size_t i; /* Local index variable */
/* Allocate memory or point at internal buffer */
- if(cd_nelmts > H5Z_COMMON_CD_VALUES) {
+ if (cd_nelmts > H5Z_COMMON_CD_VALUES) {
pline->filter[idx].cd_values = (unsigned *)H5MM_malloc(cd_nelmts * sizeof(unsigned));
- if(NULL == pline->filter[idx].cd_values)
+ if (NULL == pline->filter[idx].cd_values)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for filter parameters")
} /* end if */
else
pline->filter[idx].cd_values = pline->filter[idx]._cd_values;
/* Copy client data values */
- for(i = 0; i < cd_nelmts; i++)
- pline->filter[idx].cd_values[i] = cd_values[i];
+ for (i = 0; i < cd_nelmts; i++)
+ pline->filter[idx].cd_values[i] = cd_values[i];
} /* end if */
else
pline->filter[idx].cd_values = NULL;
@@ -1085,25 +1057,20 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_append
+ * Function: H5Z_append
*
- * Purpose: Append another filter to the specified pipeline.
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Robb Matzke
- * Tuesday, August 4, 1998
- *
- * Modifications:
+ * Purpose: Append another filter to the specified pipeline.
*
+ * Return: Non-negative on success
+ * Negative on failure
*-------------------------------------------------------------------------
*/
herr_t
H5Z_append(H5O_pline_t *pline, H5Z_filter_t filter, unsigned flags,
- size_t cd_nelmts, const unsigned int cd_values[/*cd_nelmts*/])
+ size_t cd_nelmts, const unsigned int cd_values[/*cd_nelmts*/])
{
- size_t idx;
- herr_t ret_value = SUCCEED; /* Return value */
+ size_t idx;
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
@@ -1116,16 +1083,16 @@ H5Z_append(H5O_pline_t *pline, H5Z_filter_t filter, unsigned flags,
* Check filter limit. We do it here for early warnings although we may
* decide to relax this restriction in the future.
*/
- if(pline->nused >= H5Z_MAX_NFILTERS)
- HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "too many filters in pipeline")
+ if (pline->nused >= H5Z_MAX_NFILTERS)
+ HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "too many filters in pipeline")
/* Check for freshly allocated filter pipeline */
- if(pline->version == 0)
+ if (pline->version == 0)
pline->version = H5O_PLINE_VERSION_1;
/* Allocate additional space in the pipeline if it's full */
- if(pline->nused >= pline->nalloc) {
- H5O_pline_t x;
+ if (pline->nused >= pline->nalloc) {
+ H5O_pline_t x;
size_t n;
/* Each filter's data may be stored internally or may be
@@ -1135,25 +1102,25 @@ H5Z_append(H5O_pline_t *pline, H5Z_filter_t filter, unsigned flags,
* filter struct is reallocated. Set these pointers to ~NULL
* so that we can reset them after reallocating the filters array.
*/
- for(n = 0; n < pline->nalloc; ++n)
- if(pline->filter[n].cd_values == pline->filter[n]._cd_values)
+ for (n = 0; n < pline->nalloc; ++n)
+ if (pline->filter[n].cd_values == pline->filter[n]._cd_values)
pline->filter[n].cd_values = (unsigned *)((void *) ~((size_t)NULL));
- x.nalloc = MAX(H5Z_MAX_NFILTERS, 2 * pline->nalloc);
- x.filter = (H5Z_filter_info_t *)H5MM_realloc(pline->filter, x.nalloc * sizeof(x.filter[0]));
- if(NULL == x.filter)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for filter pipeline")
+ x.nalloc = MAX(H5Z_MAX_NFILTERS, 2 * pline->nalloc);
+ x.filter = (H5Z_filter_info_t *)H5MM_realloc(pline->filter, x.nalloc * sizeof(x.filter[0]));
+ if (NULL == x.filter)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for filter pipeline")
/* Fix pointers in previous filters that need to point to their own
* internal data.
*/
- for(n = 0; n < pline->nalloc; ++n)
- if(x.filter[n].cd_values == (void *) ~((size_t) NULL))
+ for (n = 0; n < pline->nalloc; ++n)
+ if (x.filter[n].cd_values == (void *) ~((size_t) NULL))
x.filter[n].cd_values = x.filter[n]._cd_values;
/* Point to newly allocated buffer */
- pline->nalloc = x.nalloc;
- pline->filter = x.filter;
+ pline->nalloc = x.nalloc;
+ pline->filter = x.filter;
} /* end if */
/* Add the new filter to the pipeline */
@@ -1162,21 +1129,21 @@ H5Z_append(H5O_pline_t *pline, H5Z_filter_t filter, unsigned flags,
pline->filter[idx].flags = flags;
pline->filter[idx].name = NULL; /*we'll pick it up later*/
pline->filter[idx].cd_nelmts = cd_nelmts;
- if(cd_nelmts > 0) {
- size_t i; /* Local index variable */
+ if (cd_nelmts > 0) {
+ size_t i; /* Local index variable */
/* Allocate memory or point at internal buffer */
- if(cd_nelmts > H5Z_COMMON_CD_VALUES) {
+ if (cd_nelmts > H5Z_COMMON_CD_VALUES) {
pline->filter[idx].cd_values = (unsigned *)H5MM_malloc(cd_nelmts * sizeof(unsigned));
- if(NULL == pline->filter[idx].cd_values)
+ if (NULL == pline->filter[idx].cd_values)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for filter")
} /* end if */
else
pline->filter[idx].cd_values = pline->filter[idx]._cd_values;
/* Copy client data values */
- for(i = 0; i < cd_nelmts; i++)
- pline->filter[idx].cd_values[i] = cd_values[i];
+ for (i = 0; i < cd_nelmts; i++)
+ pline->filter[idx].cd_values[i] = cd_values[i];
} /* end if */
else
pline->filter[idx].cd_values = NULL;
@@ -1189,32 +1156,26 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_find_idx
+ * Function: H5Z_find_idx
*
- * Purpose: Given a filter ID return the offset in the global array
- * that holds all the registered filters.
- *
- * Return: Success: Non-negative index of entry in global filter table.
- * Failure: Negative
- *
- * Programmer: Quincey Koziol
- * Friday, April 5, 2003
- *
- * Modifications:
+ * Purpose: Given a filter ID return the offset in the global array
+ * that holds all the registered filters.
*
+ * Return: Success: Non-negative index of entry in global filter table.
+ * Failure: Negative
*-------------------------------------------------------------------------
*/
static int
H5Z_find_idx(H5Z_filter_t id)
{
size_t i; /* Local index variable */
- int ret_value=FAIL; /* Return value */
+ int ret_value = FAIL; /* Return value */
FUNC_ENTER_NOAPI_NOINIT_NOERR
- for (i=0; i<H5Z_table_used_g; i++)
- if (H5Z_table_g[i].id == id)
- HGOTO_DONE((int)i)
+ for (i = 0; i < H5Z_table_used_g; i++)
+ if (H5Z_table_g[i].id == id)
+ HGOTO_DONE((int)i)
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -1222,37 +1183,29 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_find
- *
- * Purpose: Given a filter ID return a pointer to a global struct that
- * defines the filter.
+ * Function: H5Z_find
*
- * Return: Success: Ptr to entry in global filter table.
- * Failure: NULL
- *
- * Programmer: Robb Matzke
- * Wednesday, August 5, 1998
- *
- * Modifications:
- * Use H5Z_find_idx now
- * Quincey Koziol, April 5, 2003
+ * Purpose: Given a filter ID return a pointer to a global struct that
+ * defines the filter.
*
+ * Return: Success: Ptr to entry in global filter table.
+ * Failure: NULL
*-------------------------------------------------------------------------
*/
H5Z_class2_t *
H5Z_find(H5Z_filter_t id)
{
- int idx; /* Filter index in global table */
- H5Z_class2_t *ret_value=NULL; /* Return value */
+ int idx; /* Filter index in global table */
+ H5Z_class2_t *ret_value = NULL; /* Return value */
FUNC_ENTER_NOAPI(NULL)
/* Get the index in the global table */
- if((idx=H5Z_find_idx(id))<0)
- HGOTO_ERROR(H5E_PLINE, H5E_NOTFOUND, NULL, "required filter is not registered")
+ if ((idx = H5Z_find_idx(id)) < 0)
+ HGOTO_ERROR(H5E_PLINE, H5E_NOTFOUND, NULL, "required filter %d is not registered", id)
/* Set return value */
- ret_value=H5Z_table_g+idx;
+ ret_value = H5Z_table_g + idx;
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -1260,170 +1213,168 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_pipeline
- *
- * Purpose: Process data through the filter pipeline. The FLAGS argument
- * is the filter invocation flags (definition flags come from
- * the PLINE->filter[].flags). The filters are processed in
- * definition order unless the H5Z_FLAG_REVERSE is set. The
- * FILTER_MASK is a bit-mask to indicate which filters to skip
- * and on exit will indicate which filters failed. Each
- * filter has an index number in the pipeline and that index
- * number is the filter's bit in the FILTER_MASK. NBYTES is the
- * number of bytes of data to filter and on exit should be the
- * number of resulting bytes while BUF_SIZE holds the total
- * allocated size of the buffer, which is pointed to BUF.
- *
- * If the buffer must grow during processing of the pipeline
- * then the pipeline function should free the original buffer
- * and return a fresh buffer, adjusting BUF_SIZE accordingly.
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Robb Matzke
- * Tuesday, August 4, 1998
- *
- * Modifications:
- *
+ * Function: H5Z_pipeline
+ *
+ * Purpose: Process data through the filter pipeline. The FLAGS argument
+ * is the filter invocation flags (definition flags come from
+ * the PLINE->filter[].flags). The filters are processed in
+ * definition order unless the H5Z_FLAG_REVERSE is set. The
+ * FILTER_MASK is a bit-mask to indicate which filters to skip
+ * and on exit will indicate which filters failed. Each
+ * filter has an index number in the pipeline and that index
+ * number is the filter's bit in the FILTER_MASK. NBYTES is the
+ * number of bytes of data to filter and on exit should be the
+ * number of resulting bytes while BUF_SIZE holds the total
+ * allocated size of the buffer, which is pointed to BUF.
+ *
+ * If the buffer must grow during processing of the pipeline
+ * then the pipeline function should free the original buffer
+ * and return a fresh buffer, adjusting BUF_SIZE accordingly.
+ *
+ * Return: Non-negative on success
+ * Negative on failure
*-------------------------------------------------------------------------
*/
herr_t
H5Z_pipeline(const H5O_pline_t *pline, unsigned flags,
- unsigned *filter_mask/*in,out*/, H5Z_EDC_t edc_read,
- H5Z_cb_t cb_struct, size_t *nbytes/*in,out*/,
- size_t *buf_size/*in,out*/, void **buf/*in,out*/)
+ unsigned *filter_mask/*in,out*/, H5Z_EDC_t edc_read,
+ H5Z_cb_t cb_struct, size_t *nbytes/*in,out*/,
+ size_t *buf_size/*in,out*/, void **buf/*in,out*/)
{
- size_t i, idx, new_nbytes;
- int fclass_idx; /* Index of filter class in global table */
- H5Z_class2_t *fclass=NULL; /* Filter class pointer */
+ size_t i, idx, new_nbytes;
+ int fclass_idx; /* Index of filter class in global table */
+ H5Z_class2_t *fclass=NULL; /* Filter class pointer */
#ifdef H5Z_DEBUG
- H5Z_stats_t *fstats=NULL; /* Filter stats pointer */
- H5_timer_t timer;
+ H5Z_stats_t *fstats=NULL; /* Filter stats pointer */
+ H5_timer_t timer;
#endif
- unsigned failed = 0;
- unsigned tmp_flags;
- herr_t ret_value=SUCCEED; /* Return value */
+ unsigned failed = 0;
+ unsigned tmp_flags;
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
- HDassert(0==(flags & ~((unsigned)H5Z_FLAG_INVMASK)));
+ HDassert(0 == (flags & ~((unsigned)H5Z_FLAG_INVMASK)));
HDassert(filter_mask);
HDassert(nbytes && *nbytes>0);
HDassert(buf_size && *buf_size>0);
HDassert(buf && *buf);
- HDassert(!pline || pline->nused<H5Z_MAX_NFILTERS);
+ HDassert(!pline || pline->nused < H5Z_MAX_NFILTERS);
if (pline && (flags & H5Z_FLAG_REVERSE)) { /* Read */
- for (i=pline->nused; i>0; --i) {
- idx = i-1;
+ for (i = pline->nused; i > 0; --i) {
+ idx = i-1;
- if (*filter_mask & ((unsigned)1<<idx)) {
- failed |= (unsigned)1 << idx;
- continue;/*filter excluded*/
- }
+ if (*filter_mask & ((unsigned)1 << idx)) {
+ failed |= (unsigned)1 << idx;
+ continue; /* filter excluded */
+ }
- /* If the filter isn't registered and the application doesn't
- * indicate no plugin through HDF5_PRELOAD_PLUG (using the symbol "::"),
+ /* If the filter isn't registered and the application doesn't
+ * indicate no plugin through HDF5_PRELOAD_PLUG (using the symbol "::"),
* try to load it dynamically and register it. Otherwise, return failure
*/
- if((fclass_idx = H5Z_find_idx(pline->filter[idx].id)) < 0) {
+ if ((fclass_idx = H5Z_find_idx(pline->filter[idx].id)) < 0) {
hbool_t issue_error = FALSE;
- const H5Z_class2_t *filter_info;
-
- /* Try loading the filter */
- if(NULL != (filter_info = (const H5Z_class2_t *)H5PL_load(H5PL_TYPE_FILTER, (int)(pline->filter[idx].id)))) {
- /* Register the filter we loaded */
- if(H5Z_register(filter_info) < 0)
- HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register filter")
-
- /* Search in the table of registered filters again to find the dynamic filter just loaded and registered */
- if((fclass_idx = H5Z_find_idx(pline->filter[idx].id)) < 0)
- issue_error = TRUE;
- } /* end if */
- else
- issue_error = TRUE;
+ H5PL_key_t key;
+ const H5Z_class2_t *filter_info;
+
+ /* Try loading the filter */
+ key.id = (int)(pline->filter[idx].id);
+ if(NULL != (filter_info = (const H5Z_class2_t *)H5PL_load(H5PL_TYPE_FILTER, key))) {
+ /* Register the filter we loaded */
+ if(H5Z_register(filter_info) < 0)
+ HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register filter")
+
+ /* Search in the table of registered filters again to find the dynamic filter just loaded and registered */
+ if ((fclass_idx = H5Z_find_idx(pline->filter[idx].id)) < 0)
+ issue_error = TRUE;
+ }
+ else
+ issue_error = TRUE;
/* Check for error */
- if(issue_error) {
- /* Print out the filter name to give more info. But the name is optional for
+ if (issue_error) {
+ /* Print out the filter name to give more info. But the name is optional for
* the filter */
- if(pline->filter[idx].name)
+ if (pline->filter[idx].name)
HGOTO_ERROR(H5E_PLINE, H5E_READERROR, FAIL, "required filter '%s' is not registered", pline->filter[idx].name)
else
HGOTO_ERROR(H5E_PLINE, H5E_READERROR, FAIL, "required filter (name unavailable) is not registered")
- } /* end if */
+ }
} /* end if */
- fclass=&H5Z_table_g[fclass_idx];
+ fclass = &H5Z_table_g[fclass_idx];
#ifdef H5Z_DEBUG
- fstats=&H5Z_stat_table_g[fclass_idx];
- H5_timer_begin(&timer);
+ fstats = &H5Z_stat_table_g[fclass_idx];
+ H5_timer_begin (&timer);
#endif
- tmp_flags=flags|(pline->filter[idx].flags);
- tmp_flags|=(edc_read== H5Z_DISABLE_EDC) ? H5Z_FLAG_SKIP_EDC : 0;
- new_nbytes = (fclass->filter)(tmp_flags, pline->filter[idx].cd_nelmts,
+ tmp_flags = flags | (pline->filter[idx].flags);
+ tmp_flags |= (edc_read== H5Z_DISABLE_EDC) ? H5Z_FLAG_SKIP_EDC : 0;
+ new_nbytes = (fclass->filter)(tmp_flags, pline->filter[idx].cd_nelmts,
pline->filter[idx].cd_values, *nbytes, buf_size, buf);
#ifdef H5Z_DEBUG
- H5_timer_end(&(fstats->stats[1].timer), &timer);
- fstats->stats[1].total += MAX(*nbytes, new_nbytes);
- if (0==new_nbytes) fstats->stats[1].errors += *nbytes;
+ H5_timer_end (&(fstats->stats[1].timer), &timer);
+ fstats->stats[1].total += MAX(*nbytes, new_nbytes);
+ if (0 == new_nbytes)
+ fstats->stats[1].errors += *nbytes;
#endif
- if(0==new_nbytes) {
- if((cb_struct.func && (H5Z_CB_FAIL==cb_struct.func(pline->filter[idx].id, *buf, *buf_size, cb_struct.op_data)))
- || !cb_struct.func)
- HGOTO_ERROR(H5E_PLINE, H5E_READERROR, FAIL, "filter returned failure during read")
+ if (0 == new_nbytes) {
+ if ((cb_struct.func && (H5Z_CB_FAIL == cb_struct.func(pline->filter[idx].id, *buf, *buf_size, cb_struct.op_data))) || !cb_struct.func)
+ HGOTO_ERROR(H5E_PLINE, H5E_READERROR, FAIL, "filter returned failure during read")
*nbytes = *buf_size;
failed |= (unsigned)1 << idx;
- H5E_clear_stack(NULL);
- } else {
+ H5E_clear_stack (NULL);
+ }
+ else
*nbytes = new_nbytes;
+ }
+ }
+ else if (pline) { /* Write */
+ for (idx = 0; idx < pline->nused; idx++) {
+ if (*filter_mask & ((unsigned)1 << idx)) {
+ failed |= (unsigned)1 << idx;
+ continue; /*filter excluded*/
}
- }
- } else if (pline) { /* Write */
- for (idx=0; idx<pline->nused; idx++) {
- if (*filter_mask & ((unsigned)1<<idx)) {
- failed |= (unsigned)1 << idx;
- continue; /*filter excluded*/
- }
- if ((fclass_idx=H5Z_find_idx(pline->filter[idx].id))<0) {
+ if ((fclass_idx = H5Z_find_idx(pline->filter[idx].id)) < 0) {
/* Check if filter is optional -- If it isn't, then error */
- if ((pline->filter[idx].flags & H5Z_FLAG_OPTIONAL) == 0)
- HGOTO_ERROR(H5E_PLINE, H5E_WRITEERROR, FAIL, "required filter is not registered")
-
- failed |= (unsigned)1 << idx;
- H5E_clear_stack(NULL);
- continue; /*filter excluded*/
- }
- fclass=&H5Z_table_g[fclass_idx];
+ if ((pline->filter[idx].flags & H5Z_FLAG_OPTIONAL) == 0)
+ HGOTO_ERROR(H5E_PLINE, H5E_WRITEERROR, FAIL, "required filter is not registered")
+
+ failed |= (unsigned)1 << idx;
+ H5E_clear_stack (NULL);
+ continue; /*filter excluded*/
+ }
+ fclass = &H5Z_table_g[fclass_idx];
#ifdef H5Z_DEBUG
- fstats=&H5Z_stat_table_g[fclass_idx];
- H5_timer_begin(&timer);
+ fstats = &H5Z_stat_table_g[fclass_idx];
+ H5_timer_begin (&timer);
#endif
- new_nbytes = (fclass->filter)(flags|(pline->filter[idx].flags), pline->filter[idx].cd_nelmts,
- pline->filter[idx].cd_values, *nbytes, buf_size, buf);
+ new_nbytes = (fclass->filter)(flags | (pline->filter[idx].flags), pline->filter[idx].cd_nelmts,
+ pline->filter[idx].cd_values, *nbytes, buf_size, buf);
#ifdef H5Z_DEBUG
- H5_timer_end(&(fstats->stats[0].timer), &timer);
- fstats->stats[0].total += MAX(*nbytes, new_nbytes);
- if (0==new_nbytes) fstats->stats[0].errors += *nbytes;
+ H5_timer_end (&(fstats->stats[0].timer), &timer);
+ fstats->stats[0].total += MAX(*nbytes, new_nbytes);
+ if (0 == new_nbytes)
+ fstats->stats[0].errors += *nbytes;
#endif
- if(0==new_nbytes) {
- if (0==(pline->filter[idx].flags & H5Z_FLAG_OPTIONAL)) {
- if((cb_struct.func && (H5Z_CB_FAIL==cb_struct.func(pline->filter[idx].id, *buf, *nbytes, cb_struct.op_data)))
- || !cb_struct.func)
+ if (0 == new_nbytes) {
+ if (0 == (pline->filter[idx].flags & H5Z_FLAG_OPTIONAL)) {
+ if ((cb_struct.func && (H5Z_CB_FAIL == cb_struct.func (pline->filter[idx].id, *buf, *nbytes, cb_struct.op_data))) || !cb_struct.func)
HGOTO_ERROR(H5E_PLINE, H5E_WRITEERROR, FAIL, "filter returned failure")
*nbytes = *buf_size;
}
failed |= (unsigned)1 << idx;
- H5E_clear_stack(NULL);
- } else {
- *nbytes = new_nbytes;
+ H5E_clear_stack (NULL);
}
- }
+ else
+ *nbytes = new_nbytes;
+ }
}
*filter_mask = failed;
@@ -1434,41 +1385,36 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_filter_info
- *
- * Purpose: Get pointer to filter info for pipeline
+ * Function: H5Z_filter_info
*
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Quincey Koziol
- * Friday, April 5, 2003
- *
- * Modifications:
+ * Purpose: Get pointer to filter info for pipeline
*
+ * Return: Non-negative on success
+ * Negative on failure
*-------------------------------------------------------------------------
*/
H5Z_filter_info_t *
H5Z_filter_info(const H5O_pline_t *pline, H5Z_filter_t filter)
{
- size_t idx; /* Index of filter in pipeline */
+ size_t idx; /* Index of filter in pipeline */
H5Z_filter_info_t *ret_value = NULL; /* Return value */
FUNC_ENTER_NOAPI(NULL)
HDassert(pline);
- HDassert(filter>=0 && filter<=H5Z_FILTER_MAX);
+ HDassert(filter >= 0 && filter <= H5Z_FILTER_MAX);
/* Locate the filter in the pipeline */
- for(idx=0; idx<pline->nused; idx++)
- if(pline->filter[idx].id==filter)
+ for (idx = 0; idx < pline->nused; idx++)
+ if (pline->filter[idx].id == filter)
break;
/* Check if the filter was not already in the pipeline */
- if(idx>=pline->nused)
- HGOTO_ERROR(H5E_PLINE, H5E_NOTFOUND, NULL, "filter not in pipeline")
+ if (idx >= pline->nused)
+ HGOTO_ERROR(H5E_PLINE, H5E_NOTFOUND, NULL, "filter not in pipeline")
/* Set return value */
- ret_value=&pline->filter[idx];
+ ret_value = &pline->filter[idx];
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -1476,41 +1422,35 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_filter_in_pline
- *
- * Purpose: Check wheter a filter is in the filter pipeline using the
- * filter ID. This function is very similar to H5Z_filter_info
+ * Function: H5Z_filter_in_pline
*
- * Return: TRUE - found filter
- * FALSE - not found
- * FAIL - error
- *
- * Programmer: Raymond Lu
- * 26 April 2013
- *
- * Modifications:
+ * Purpose: Check wheter a filter is in the filter pipeline using the
+ * filter ID. This function is very similar to H5Z_filter_info
*
+ * Return: TRUE - found filter
+ * FALSE - not found
+ * FAIL - error
*-------------------------------------------------------------------------
*/
htri_t
H5Z_filter_in_pline(const H5O_pline_t *pline, H5Z_filter_t filter)
{
- size_t idx; /* Index of filter in pipeline */
- htri_t ret_value = TRUE; /* Return value */
+ size_t idx; /* Index of filter in pipeline */
+ htri_t ret_value = TRUE; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
HDassert(pline);
- HDassert(filter>=0 && filter<=H5Z_FILTER_MAX);
+ HDassert(filter >= 0 && filter <= H5Z_FILTER_MAX);
/* Locate the filter in the pipeline */
- for(idx=0; idx<pline->nused; idx++)
- if(pline->filter[idx].id==filter)
+ for (idx = 0; idx < pline->nused; idx++)
+ if (pline->filter[idx].id == filter)
break;
/* Check if the filter was not already in the pipeline */
- if(idx>=pline->nused)
- ret_value = FALSE;
+ if (idx >= pline->nused)
+ ret_value = FALSE;
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -1519,25 +1459,20 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5Z_all_filters_avail
- *
- * Purpose: Verify that all the filters in a pipeline are currently
- * available (i.e. registered)
+ * Function: H5Z_all_filters_avail
*
- * Return: Non-negative (TRUE/FALSE) on success/Negative on failure
- *
- * Programmer: Quincey Koziol
- * Tuesday, April 8, 2003
- *
- * Modifications:
+ * Purpose: Verify that all the filters in a pipeline are currently
+ * available (i.e. registered)
*
+ * Return: Non-negative (TRUE/FALSE) on success
+ * Negative on failure
*-------------------------------------------------------------------------
*/
htri_t
H5Z_all_filters_avail(const H5O_pline_t *pline)
{
- size_t i,j; /* Local index variable */
- htri_t ret_value=TRUE; /* Return value */
+ size_t i, j; /* Local index variable */
+ htri_t ret_value = TRUE; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
@@ -1545,15 +1480,14 @@ H5Z_all_filters_avail(const H5O_pline_t *pline)
HDassert(pline);
/* Iterate through all the filters in pipeline */
- for(i=0; i<pline->nused; i++) {
-
+ for (i = 0; i < pline->nused; i++) {
/* Look for each filter in the list of registered filters */
- for(j=0; j<H5Z_table_used_g; j++)
- if(H5Z_table_g[j].id==pline->filter[i].id)
+ for (j = 0; j < H5Z_table_used_g; j++)
+ if (H5Z_table_g[j].id == pline->filter[i].id)
break;
/* Check if we didn't find the filter */
- if(j==H5Z_table_used_g)
+ if (j == H5Z_table_used_g)
HGOTO_DONE(FALSE)
} /* end for */
@@ -1561,21 +1495,15 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5Z_all_filters_avail() */
-
/*-------------------------------------------------------------------------
* Function: H5Z_delete
*
- * Purpose: Delete filter FILTER from pipeline PLINE;
- * deletes all filters if FILTER is H5Z_FILTER_NONE
- *
- * Return: Non-negative on success/Negative on failure
- *
- * Programmer: Pedro Vicente
- * Monday, January 26, 2004
- *
- * Modifications:
+ * Purpose: Delete filter FILTER from pipeline PLINE;
+ * deletes all filters if FILTER is H5Z_FILTER_NONE
*
+ * Return: Non-negative on success
+ * Negative on failure
*-------------------------------------------------------------------------
*/
herr_t
@@ -1590,57 +1518,57 @@ H5Z_delete(H5O_pline_t *pline, H5Z_filter_t filter)
HDassert(filter >= 0 && filter <= H5Z_FILTER_MAX);
/* if the pipeline has no filters, just return */
- if(pline->nused==0)
- HGOTO_DONE(SUCCEED)
+ if (pline->nused == 0)
+ HGOTO_DONE (SUCCEED)
/* Delete all filters */
- if(H5Z_FILTER_ALL == filter) {
- if(H5O_msg_reset(H5O_PLINE_ID, pline) < 0)
+ if (H5Z_FILTER_ALL == filter) {
+ if (H5O_msg_reset(H5O_PLINE_ID, pline) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTFREE, FAIL, "can't release pipeline info")
} /* end if */
/* Delete filter */
else {
- size_t idx; /* Index of filter in pipeline */
- hbool_t found = FALSE; /* Indicate filter was found in pipeline */
+ size_t idx; /* Index of filter in pipeline */
+ hbool_t found = FALSE; /* Indicate filter was found in pipeline */
/* Locate the filter in the pipeline */
- for(idx = 0; idx < pline->nused; idx++)
- if(pline->filter[idx].id == filter) {
+ for (idx = 0; idx < pline->nused; idx++)
+ if (pline->filter[idx].id == filter) {
found = TRUE;
break;
- } /* end if */
+ }
/* filter was not found in the pipeline */
- if(!found)
+ if (!found)
HGOTO_ERROR(H5E_PLINE, H5E_NOTFOUND, FAIL, "filter not in pipeline")
/* Free information for deleted filter */
- if(pline->filter[idx].name && pline->filter[idx].name != pline->filter[idx]._name)
+ if (pline->filter[idx].name && pline->filter[idx].name != pline->filter[idx]._name)
HDassert((HDstrlen(pline->filter[idx].name) + 1) > H5Z_COMMON_NAME_LEN);
- if(pline->filter[idx].name != pline->filter[idx]._name)
+ if (pline->filter[idx].name != pline->filter[idx]._name)
pline->filter[idx].name = (char *)H5MM_xfree(pline->filter[idx].name);
- if(pline->filter[idx].cd_values && pline->filter[idx].cd_values != pline->filter[idx]._cd_values)
+ if (pline->filter[idx].cd_values && pline->filter[idx].cd_values != pline->filter[idx]._cd_values)
HDassert(pline->filter[idx].cd_nelmts > H5Z_COMMON_CD_VALUES);
- if(pline->filter[idx].cd_values != pline->filter[idx]._cd_values)
+ if (pline->filter[idx].cd_values != pline->filter[idx]._cd_values)
pline->filter[idx].cd_values = (unsigned *)H5MM_xfree(pline->filter[idx].cd_values);
/* Remove filter from pipeline array */
- if((idx + 1) < pline->nused) {
+ if ((idx + 1) < pline->nused) {
/* Copy filters down & fix up any client data value arrays using internal storage */
- for(; (idx + 1) < pline->nused; idx++) {
+ for (; (idx + 1) < pline->nused; idx++) {
pline->filter[idx] = pline->filter[idx + 1];
- if(pline->filter[idx].name && (HDstrlen(pline->filter[idx].name) + 1) <= H5Z_COMMON_NAME_LEN)
+ if (pline->filter[idx].name && (HDstrlen(pline->filter[idx].name) + 1) <= H5Z_COMMON_NAME_LEN)
pline->filter[idx].name = pline->filter[idx]._name;
- if(pline->filter[idx].cd_nelmts <= H5Z_COMMON_CD_VALUES)
+ if (pline->filter[idx].cd_nelmts <= H5Z_COMMON_CD_VALUES)
pline->filter[idx].cd_values = pline->filter[idx]._cd_values;
- } /* end for */
- } /* end if */
+ }
+ }
/* Decrement number of used filters */
pline->nused--;
/* Reset information for previous last filter in pipeline */
- HDmemset(&pline->filter[pline->nused], 0, sizeof(H5Z_filter_info_t));
+ HDmemset (&pline->filter[pline->nused], 0, sizeof(H5Z_filter_info_t));
} /* end else */
done:
@@ -1651,14 +1579,11 @@ done:
/*-------------------------------------------------------------------------
* Function: H5Zget_filter_info
*
- * Purpose: Gets information about a pipeline data filter and stores it
- * in filter_config_flags.
- *
- * Return: zero on success / negative on failure
- *
- * Programmer: James Laird and Nat Furrer
- * Monday, June 7, 2004
+ * Purpose: Gets information about a pipeline data filter and stores it
+ * in filter_config_flags.
*
+ * Return: zero on success
+ * negative on failure
*-------------------------------------------------------------------------
*/
herr_t
@@ -1670,8 +1595,8 @@ H5Zget_filter_info(H5Z_filter_t filter, unsigned int *filter_config_flags)
H5TRACE2("e", "Zf*Iu", filter, filter_config_flags);
/* Get the filter info */
- if(H5Z_get_filter_info(filter, filter_config_flags) < 0)
- HGOTO_ERROR(H5E_PLINE, H5E_CANTGET, FAIL, "Filter info not retrieved")
+ if (H5Z_get_filter_info(filter, filter_config_flags) < 0)
+ HGOTO_ERROR (H5E_PLINE, H5E_CANTGET, FAIL, "Filter info not retrieved")
done:
FUNC_LEAVE_API(ret_value)
@@ -1681,35 +1606,32 @@ done:
/*-------------------------------------------------------------------------
* Function: H5Z_get_filter_info
*
- * Purpose: Gets information about a pipeline data filter and stores it
- * in filter_config_flags.
- *
- * Return: zero on success / negative on failure
- *
- * Programmer: Quincey Koziol
- * Saturday, May 11, 2013
+ * Purpose: Gets information about a pipeline data filter and stores it
+ * in filter_config_flags.
*
+ * Return: zero on success
+ * negative on failure
*-------------------------------------------------------------------------
*/
herr_t
H5Z_get_filter_info(H5Z_filter_t filter, unsigned int *filter_config_flags)
{
H5Z_class2_t *fclass;
- herr_t ret_value = SUCCEED;
+ herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI(FAIL)
/* Look up the filter class info */
- if(NULL == (fclass = H5Z_find(filter)))
+ if (NULL == (fclass = H5Z_find(filter)))
HGOTO_ERROR(H5E_PLINE, H5E_BADVALUE, FAIL, "Filter not defined")
/* Set the filter config flags for the application */
- if(filter_config_flags != NULL) {
+ if (filter_config_flags != NULL) {
*filter_config_flags = 0;
- if(fclass->encoder_present)
+ if (fclass->encoder_present)
*filter_config_flags |= H5Z_FILTER_CONFIG_ENCODE_ENABLED;
- if(fclass->decoder_present)
+ if (fclass->decoder_present)
*filter_config_flags |= H5Z_FILTER_CONFIG_DECODE_ENABLED;
} /* end if */