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authorQuincey Koziol <koziol@hdfgroup.org>2006-10-23 10:15:52 (GMT)
committerQuincey Koziol <koziol@hdfgroup.org>2006-10-23 10:15:52 (GMT)
commit1202e83013bdbce9592d0bd70f41e84c83f6c2d5 (patch)
treec7926ea2ecc426f8cc1f31960d0c31c02bfd08dc /src
parent8ee7c55feaf099695eb3b25cc9eda3ee5885a7bc (diff)
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[svn-r12801] Description:
Fix several errors in the "latest version" of the object header format changes and enable the new version when requested now. Clean up several confusing or duplicated sections of code. Tested on: Linux/32 2.4 (heping) Linux/64 2.4 (mir) FreeBSD/32 4.11 (sleipnir)
Diffstat (limited to 'src')
-rw-r--r--src/H5O.c793
-rw-r--r--src/H5Ocache.c15
-rw-r--r--src/H5Opkg.h5
3 files changed, 478 insertions, 335 deletions
diff --git a/src/H5O.c b/src/H5O.c
index bcad188..d0422c1 100644
--- a/src/H5O.c
+++ b/src/H5O.c
@@ -91,7 +91,7 @@ typedef struct {
/* Typedef for "internal library" iteration operations */
typedef herr_t (*H5O_lib_operator_t)(H5O_t *oh, H5O_mesg_t *mesg/*in,out*/,
- unsigned idx, unsigned * oh_flags_ptr, void *operator_data/*in,out*/);
+ unsigned sequence, unsigned *oh_flags_ptr/*out*/, void *operator_data/*in,out*/);
/* Some syntactic sugar to make the compiler happy with two different kinds of iterator callbacks */
typedef union {
@@ -147,14 +147,18 @@ static int H5O_append_real(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
unsigned * oh_flags_ptr);
static herr_t H5O_remove_real(const H5O_loc_t *loc, const H5O_msg_class_t *type,
int sequence, H5O_operator_t op, void *op_data, hbool_t adj_link, hid_t dxpl_id);
-static herr_t H5O_eliminate_gap(H5O_t *oh, unsigned chunkno, unsigned idx,
+static herr_t H5O_eliminate_gap(H5O_t *oh, H5O_mesg_t *mesg,
uint8_t *new_gap_loc, size_t new_gap_size);
static herr_t H5O_add_gap(H5O_t *oh, unsigned chunkno, unsigned idx,
uint8_t *new_gap_loc, size_t new_gap_size);
static unsigned H5O_alloc(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
const H5O_msg_class_t *type, size_t size, hbool_t * oh_dirtied_ptr);
static herr_t H5O_alloc_msgs(H5O_t *oh, size_t min_alloc);
-static htri_t H5O_move_msgs_forward(H5F_t *f, H5O_t *oh, hid_t dxpl_id);
+static herr_t H5O_alloc_null(H5O_t *oh, unsigned null_idx,
+ const H5O_msg_class_t *new_type, void *new_native, size_t new_size);
+static herr_t H5O_release_mesg(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
+ H5O_mesg_t *mesg, hbool_t delete_mesg, hbool_t adj_link);
+static htri_t H5O_move_msgs_forward(H5O_t *oh);
static htri_t H5O_merge_null(H5O_t *oh);
static htri_t H5O_remove_empty_chunks(H5F_t *f, H5O_t *oh, hid_t dxpl_id);
static herr_t H5O_condense_header(H5F_t *f, H5O_t *oh, hid_t dxpl_id);
@@ -602,7 +606,7 @@ done:
} /* end if */
FUNC_LEAVE_NOAPI(ret_value)
-}
+} /* end H5O_open_by_loc() */
/*-------------------------------------------------------------------------
@@ -630,34 +634,34 @@ H5O_get_oloc(hid_t object_id)
switch(H5I_get_type(object_id))
{
- case(H5I_GROUP):
- if((grp = H5I_object(object_id)) == NULL)
- HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, NULL, "couldn't get group from ID")
- if((ret_value = H5G_oloc(grp)) == NULL)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "unable to get object location from group ID")
- break;
+ case(H5I_GROUP):
+ if((grp = H5I_object(object_id)) == NULL)
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, NULL, "couldn't get group from ID")
+ if((ret_value = H5G_oloc(grp)) == NULL)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "unable to get object location from group ID")
+ break;
- case(H5I_DATASET):
- if((dset = H5I_object(object_id)) == NULL)
- HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, NULL, "couldn't get dataset from ID")
- if((ret_value = H5D_oloc(dset)) == NULL)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "unable to get object location from dataset ID")
- break;
+ case(H5I_DATASET):
+ if((dset = H5I_object(object_id)) == NULL)
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, NULL, "couldn't get dataset from ID")
+ if((ret_value = H5D_oloc(dset)) == NULL)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "unable to get object location from dataset ID")
+ break;
- case(H5I_DATATYPE):
- if((type = H5I_object(object_id)) == NULL)
- HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, NULL, "couldn't get type from ID")
- if((ret_value = H5T_oloc(type)) == NULL)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "unable to get object location from datatype ID")
- break;
+ case(H5I_DATATYPE):
+ if((type = H5I_object(object_id)) == NULL)
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, NULL, "couldn't get type from ID")
+ if((ret_value = H5T_oloc(type)) == NULL)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "unable to get object location from datatype ID")
+ break;
- default:
- HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, NULL, "invalid object type")
- }
+ default:
+ HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, NULL, "invalid object type")
+ } /* end switch */
done:
FUNC_LEAVE_NOAPI(ret_value)
-}
+} /* end H5O_get_oloc() */
/*-------------------------------------------------------------------------
@@ -871,14 +875,13 @@ H5O_close(H5O_loc_t *loc)
--loc->file->nopen_objs;
#ifdef H5O_DEBUG
- if (H5DEBUG(O)) {
- if(loc->file->file_id < 0 && 1 == loc->file->shared->nrefs) {
+ if(H5DEBUG(O)) {
+ if(loc->file->file_id < 0 && 1 == loc->file->shared->nrefs)
HDfprintf(H5DEBUG(O), "< %a auto %lu remaining\n",
loc->addr,
(unsigned long)(loc->file->nopen_objs));
- } else {
+ else
HDfprintf(H5DEBUG(O), "< %a\n", loc->addr);
- }
} /* end if */
#endif
@@ -886,12 +889,12 @@ H5O_close(H5O_loc_t *loc)
* If the file open object count has reached the number of open mount points
* (each of which has a group open in the file) attempt to close the file.
*/
- if(loc->file->nopen_objs == loc->file->mtab.nmounts) {
+ if(loc->file->nopen_objs == loc->file->mtab.nmounts)
/* Attempt to close down the file hierarchy */
if(H5F_try_close(loc->file) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTCLOSEFILE, FAIL, "problem attempting file close")
- } /* end if */
+ /* Release location information */
if(H5O_loc_free(loc) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "problem attempting to free location")
@@ -1110,19 +1113,19 @@ H5O_copy (unsigned type_id, const void *mesg, void *dst)
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
void *ret_value; /* Return value */
- FUNC_ENTER_NOAPI(H5O_copy, NULL);
+ FUNC_ENTER_NOAPI(H5O_copy, NULL)
/* check args */
- assert(type_id < NELMTS(H5O_msg_class_g));
- type=H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
- assert(type);
+ HDassert(type_id < NELMTS(H5O_msg_class_g));
+ type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
+ HDassert(type);
/* Call the "real" copy routine */
- if((ret_value=H5O_copy_real(type, mesg, dst))==NULL)
+ if((ret_value = H5O_copy_real(type, mesg, dst)) == NULL)
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, NULL, "unable to copy object header message")
done:
- FUNC_LEAVE_NOAPI(ret_value);
+ FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_copy() */
@@ -1551,7 +1554,7 @@ H5O_read_real(const H5O_loc_t *loc, const H5O_msg_class_t *type, int sequence, v
* the raw message) so we must copy the native message before
* returning.
*/
- if(NULL==(ret_value = (type->copy) (oh->mesg[idx].native, mesg, 0)))
+ if(NULL == (ret_value = (type->copy) (oh->mesg[idx].native, mesg, 0)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to copy message to user space")
} /* end else */
@@ -1591,22 +1594,22 @@ H5O_find_in_ohdr(H5F_t *f, hid_t dxpl_id, H5O_t *oh, const H5O_msg_class_t **typ
unsigned u;
unsigned ret_value;
- FUNC_ENTER_NOAPI_NOINIT(H5O_find_in_ohdr);
+ FUNC_ENTER_NOAPI_NOINIT(H5O_find_in_ohdr)
/* Check args */
- assert(f);
- assert(oh);
- assert(type_p);
+ HDassert(f);
+ HDassert(oh);
+ HDassert(type_p);
/* Scan through the messages looking for the right one */
- for (u = 0; u < oh->nmesgs; u++) {
- if (*type_p && (*type_p)->id != oh->mesg[u].type->id)
+ for(u = 0; u < oh->nmesgs; u++) {
+ if(*type_p && (*type_p)->id != oh->mesg[u].type->id)
continue;
- if (--sequence < 0)
+ if(--sequence < 0)
break;
- }
+ } /* end for */
- if (sequence >= 0)
+ if(sequence >= 0)
HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, UFAIL, "unable to find object header message")
/*
@@ -1622,11 +1625,11 @@ H5O_find_in_ohdr(H5F_t *f, hid_t dxpl_id, H5O_t *oh, const H5O_msg_class_t **typ
*type_p = oh->mesg[u].type;
/* Set return value */
- ret_value=u;
+ ret_value = u;
done:
- FUNC_LEAVE_NOAPI(ret_value);
-}
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5O_find_in_ohdr() */
/*-------------------------------------------------------------------------
@@ -1794,6 +1797,9 @@ H5O_modify_real(H5O_loc_t *loc, const H5O_msg_class_t *type, int overwrite,
/* Update the modification time message if any */
if(update_flags & H5O_UPDATE_TIME)
H5O_touch_oh(loc->file, dxpl_id, oh, FALSE, &oh_flags);
+#ifdef H5O_DEBUG
+H5O_assert(oh);
+#endif /* H5O_DEBUG */
/* Set return value */
ret_value = sequence;
@@ -1975,6 +1981,9 @@ H5O_append_real(H5F_t *f, hid_t dxpl_id, H5O_t *oh, const H5O_msg_class_t *type,
/* Write the information to the message */
if(H5O_write_mesg(oh, idx, type, mesg, flags, 0, oh_flags_ptr) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to write message")
+#ifdef H5O_DEBUG
+H5O_assert(oh);
+#endif /* H5O_DEBUG */
/* Set return value */
ret_value = idx;
@@ -2077,25 +2086,25 @@ H5O_write_mesg(H5O_t *oh, unsigned idx, const H5O_msg_class_t *type,
unsigned * oh_flags_ptr)
{
H5O_mesg_t *idx_msg; /* Pointer to message to modify */
- herr_t ret_value=SUCCEED; /* Return value */
+ herr_t ret_value = SUCCEED; /* Return value */
- FUNC_ENTER_NOAPI_NOINIT(H5O_write_mesg);
+ FUNC_ENTER_NOAPI_NOINIT(H5O_write_mesg)
/* check args */
- assert(oh);
- assert(type);
- assert(mesg);
- assert(oh_flags_ptr);
+ HDassert(oh);
+ HDassert(type);
+ HDassert(mesg);
+ HDassert(oh_flags_ptr);
/* Set pointer to the correct message */
- idx_msg=&oh->mesg[idx];
+ idx_msg = &oh->mesg[idx];
/* Reset existing native information */
- if(!(update_flags&H5O_UPDATE_DATA_ONLY))
+ if(!(update_flags & H5O_UPDATE_DATA_ONLY))
H5O_reset_real(type, idx_msg->native);
/* Copy the native value for the message */
- if (NULL == (idx_msg->native = (type->copy) (mesg, idx_msg->native, update_flags)))
+ if(NULL == (idx_msg->native = (type->copy)(mesg, idx_msg->native, update_flags)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to copy message to object header")
idx_msg->flags = flags;
@@ -2103,7 +2112,7 @@ H5O_write_mesg(H5O_t *oh, unsigned idx, const H5O_msg_class_t *type,
*oh_flags_ptr |= H5AC__DIRTIED_FLAG;
done:
- FUNC_LEAVE_NOAPI(ret_value);
+ FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_write_mesg() */
@@ -2449,8 +2458,8 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5O_remove_cb(H5O_t *oh, H5O_mesg_t *mesg/*in,out*/, unsigned idx,
- unsigned * oh_flags_ptr, void *_udata/*in,out*/)
+H5O_remove_cb(H5O_t *oh, H5O_mesg_t *mesg/*in,out*/,
+ unsigned sequence, unsigned * oh_flags_ptr, void *_udata/*in,out*/)
{
H5O_iter_ud1_t *udata = (H5O_iter_ud1_t *)_udata; /* Operator user data */
htri_t try_remove = FALSE; /* Whether to try removing a message */
@@ -2464,12 +2473,12 @@ H5O_remove_cb(H5O_t *oh, H5O_mesg_t *mesg/*in,out*/, unsigned idx,
/* Check for callback routine */
if(udata->op) {
/* Call the iterator callback */
- if((try_remove = (udata->op)(mesg->native, idx, udata->op_data)) < 0)
+ if((try_remove = (udata->op)(mesg->native, sequence, udata->op_data)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, H5O_ITER_ERROR, "object header message deletion callback failed")
} /* end if */
else {
/* If there's no callback routine, does the sequence # match? */
- if((int)idx == udata->sequence || H5O_ALL == udata->sequence)
+ if((int)sequence == udata->sequence || H5O_ALL == udata->sequence)
try_remove = H5O_ITER_STOP;
} /* end else */
@@ -2482,35 +2491,9 @@ H5O_remove_cb(H5O_t *oh, H5O_mesg_t *mesg/*in,out*/, unsigned idx,
if(mesg->flags & H5O_FLAG_CONSTANT)
udata->nfailed++;
else {
- /* Free any space referred to in the file from this message */
- if(H5O_delete_mesg(udata->f, udata->dxpl_id, mesg, udata->adj_link) < 0)
- HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, H5O_ITER_ERROR, "unable to delete file space for object header message")
-
- /* Free any native information */
- H5O_free_mesg(mesg);
-
- /* Change message type to nil and zero it */
- mesg->type = H5O_MSG_NULL;
-#ifdef QAK
-HDfprintf(stderr, "%s: oh->version = %u\n", FUNC, oh->version);
-HDfprintf(stderr, "%s: mesg->raw_size = %Zu\n", FUNC, mesg->raw_size);
-#endif /* QAK */
- HDmemset(mesg->raw, 0, mesg->raw_size);
-
- /* Indicate that the message was modified */
- mesg->dirty = TRUE;
-
- /* Check if chunk has a gap currently */
- if(oh->chunk[mesg->chunkno].gap) {
- /* Eliminate the gap in the chunk */
- if(H5O_eliminate_gap(oh, mesg->chunkno, idx,
- ((oh->chunk[mesg->chunkno].image + oh->chunk[mesg->chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[mesg->chunkno].gap)),
- oh->chunk[mesg->chunkno].gap) < 0)
- HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, H5O_ITER_ERROR, "can't insert eliminate in chunk")
-
- /* Set the gap size to zero for the chunk */
- oh->chunk[mesg->chunkno].gap = 0;
- } /* end if */
+ /* Convert message into a null message */
+ if(H5O_release_mesg(udata->f, udata->dxpl_id, oh, mesg, TRUE, udata->adj_link) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, H5O_ITER_ERROR, "unable to convert into null message")
/* Indicate that the object header was modified */
*oh_flags_ptr |= H5AC__DIRTIED_FLAG;
@@ -2637,6 +2620,166 @@ done:
/*-------------------------------------------------------------------------
*
+ * Function: H5O_alloc_null
+ *
+ * Purpose: Allocate room for a new message from a null message
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * koziol@hdfgroup.org
+ * Oct 22 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5O_alloc_null(H5O_t *oh, unsigned null_idx, const H5O_msg_class_t *new_type,
+ void *new_native, size_t new_size)
+{
+ H5O_mesg_t *alloc_msg; /* Pointer to null message to allocate out of */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5O_alloc_null)
+
+ /* check args */
+ HDassert(oh);
+ HDassert(new_type);
+ HDassert(new_size);
+
+ /* Point to null message to allocate out of */
+ alloc_msg = &oh->mesg[null_idx];
+
+ /* Check if there's a need to split the null message */
+ if(alloc_msg->raw_size > new_size) {
+ /* Check for producing a gap in the chunk */
+ if((alloc_msg->raw_size - new_size) < (size_t)H5O_SIZEOF_MSGHDR_OH(oh)) {
+ size_t gap_size = alloc_msg->raw_size - new_size; /* Size of gap produced */
+
+ /* Adjust the size of the null message being eliminated */
+ alloc_msg->raw_size = new_size;
+
+ /* Add the gap to the chunk */
+ if(H5O_add_gap(oh, alloc_msg->chunkno, null_idx, alloc_msg->raw + alloc_msg->raw_size, gap_size) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, UFAIL, "can't insert gap in chunk")
+ } /* end if */
+ else {
+ size_t new_mesg_size = new_size + H5O_SIZEOF_MSGHDR_OH(oh); /* Total size of newly allocated message */
+ H5O_mesg_t *null_msg; /* Pointer to new null message */
+
+ /* Check if we need to extend message table to hold the new null message */
+ if(oh->nmesgs >= oh->alloc_nmesgs) {
+ if(H5O_alloc_msgs(oh, (size_t)1) < 0)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "can't allocate more space for messages")
+
+ /* "Retarget" 'alloc_msg' pointer into newly re-allocated array of messages */
+ alloc_msg = &oh->mesg[null_idx];
+ } /* end if */
+
+ /* Create new null message, with the tail of the previous null message */
+ null_msg = &(oh->mesg[oh->nmesgs++]);
+ null_msg->type = H5O_MSG_NULL;
+ null_msg->dirty = TRUE;
+ null_msg->native = NULL;
+ null_msg->raw = alloc_msg->raw + new_mesg_size;
+ null_msg->raw_size = alloc_msg->raw_size - new_mesg_size;
+ null_msg->chunkno = alloc_msg->chunkno;
+
+ /* Check for gap in new null message's chunk */
+ if(oh->chunk[null_msg->chunkno].gap > 0) {
+ unsigned null_chunkno = null_msg->chunkno; /* Chunk w/gap */
+
+ /* Eliminate the gap in the chunk */
+ if(H5O_eliminate_gap(oh, null_msg,
+ ((oh->chunk[null_chunkno].image + oh->chunk[null_chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[null_chunkno].gap)),
+ oh->chunk[null_chunkno].gap) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, UFAIL, "can't eliminate gap in chunk")
+
+ /* Set the gap size to zero for the chunk */
+ oh->chunk[null_chunkno].gap = 0;
+ } /* end if */
+
+ /* Set the size of the new "real" message */
+ alloc_msg->raw_size = new_size;
+ } /* end else */
+ } /* end if */
+
+ /* Initialize the new message */
+ alloc_msg->type = new_type;
+ alloc_msg->dirty = TRUE;
+ alloc_msg->native = new_native;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5O_alloc_null() */
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Function: H5O_release_mesg
+ *
+ * Purpose: Convert a message into a null message
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * koziol@hdfgroup.org
+ * Oct 22 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5O_release_mesg(H5F_t *f, hid_t dxpl_id, H5O_t *oh, H5O_mesg_t *mesg,
+ hbool_t delete_mesg, hbool_t adj_link)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT(H5O_release_mesg)
+
+ /* check args */
+ HDassert(f);
+ HDassert(oh);
+ HDassert(mesg);
+
+ /* Check if we should operate on the message */
+ if(delete_mesg) {
+ /* Free any space referred to in the file from this message */
+ if(H5O_delete_mesg(f, dxpl_id, mesg, adj_link) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to delete file space for object header message")
+
+ /* Free any native information */
+ H5O_free_mesg(mesg);
+ } /* end if */
+
+ /* Change message type to nil and zero it */
+ mesg->type = H5O_MSG_NULL;
+ HDassert(mesg->raw + mesg->raw_size <= (oh->chunk[mesg->chunkno].image + oh->chunk[mesg->chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[mesg->chunkno].gap));
+ HDmemset(mesg->raw, 0, mesg->raw_size);
+
+ /* Clear message flags */
+ mesg->flags = 0;
+
+ /* Indicate that the message was modified */
+ mesg->dirty = TRUE;
+
+ /* Check if chunk has a gap currently */
+ if(oh->chunk[mesg->chunkno].gap) {
+ /* Eliminate the gap in the chunk */
+ if(H5O_eliminate_gap(oh, mesg,
+ ((oh->chunk[mesg->chunkno].image + oh->chunk[mesg->chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[mesg->chunkno].gap)),
+ oh->chunk[mesg->chunkno].gap) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, FAIL, "can't eliminate gap in chunk")
+
+ /* Set the gap size to zero for the chunk */
+ oh->chunk[mesg->chunkno].gap = 0;
+ } /* end if */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5O_release_mesg() */
+
+
+/*-------------------------------------------------------------------------
+ *
* Function: H5O_move_msgs_forward
*
* Purpose: Move messages toward first chunk
@@ -2650,7 +2793,7 @@ done:
*-------------------------------------------------------------------------
*/
static htri_t
-H5O_move_msgs_forward(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
+H5O_move_msgs_forward(H5O_t *oh)
{
hbool_t packed_msg; /* Flag to indicate that messages were packed */
hbool_t did_packing = FALSE; /* Whether any messages were packed */
@@ -2692,9 +2835,9 @@ H5O_move_msgs_forward(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
/* Don't swap messages if the second message is also a null message */
/* (We'll merge them together later, in another routine) */
if(H5O_NULL_ID != nonnull_msg->type->id) {
- /* Make certain non-null message has been translated into native form */
- /* (So that when we mark it dirty, it will get copied back into raw chunk image) */
- LOAD_NATIVE(f, dxpl_id, nonnull_msg, FAIL)
+ /* Copy raw data for non-null message to new location */
+ HDmemcpy(curr_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh),
+ nonnull_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh), nonnull_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh));
/* Adjust non-null message's offset in chunk */
nonnull_msg->raw = curr_msg->raw;
@@ -2703,9 +2846,12 @@ H5O_move_msgs_forward(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
curr_msg->raw = nonnull_msg->raw +
nonnull_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh);
- /* Mark messages dirty */
+ /* Mark null message dirty */
+ /* (since we need to re-encode its message header) */
+ /* (also, marking this message dirty means we
+ * don't have to mark chunk as dirty)
+ */
curr_msg->dirty = TRUE;
- nonnull_msg->dirty = TRUE;
/* Set the flag to indicate that the null message
* was packed - if its not at the end its chunk,
@@ -2732,26 +2878,23 @@ H5O_move_msgs_forward(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
&& curr_msg->raw_size <= null_msg->raw_size) {
unsigned old_chunkno; /* Old message information */
uint8_t *old_raw;
- size_t old_raw_size;
/* Keep old information about non-null message */
old_chunkno = curr_msg->chunkno;
old_raw = curr_msg->raw;
- old_raw_size = curr_msg->raw_size;
- /* Make certain non-null message has been translated into native form */
- /* (So that when we mark it dirty, it will get copied back into raw chunk image) */
- LOAD_NATIVE(f, dxpl_id, curr_msg, FAIL)
+ /* Copy raw data for non-null message to new chunk */
+ HDmemcpy(null_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh), curr_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh), curr_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh));
- /* Change information for non-null message */
- if(curr_msg->raw_size == null_msg->raw_size) {
- /* Point non-null message at null message's space */
- curr_msg->chunkno = null_msg->chunkno;
- curr_msg->raw = null_msg->raw;
+ /* Mark null message's chunk as dirty, since the raw data image changed */
+ oh->chunk[null_msg->chunkno].dirty = TRUE;
- /* Mark non-null message dirty */
- curr_msg->dirty = TRUE;
+ /* Point non-null message at null message's space */
+ curr_msg->chunkno = null_msg->chunkno;
+ curr_msg->raw = null_msg->raw;
+ /* Change information for null message */
+ if(curr_msg->raw_size == null_msg->raw_size) {
/* Point null message at old non-null space */
/* (Instead of freeing it and allocating new message) */
null_msg->chunkno = old_chunkno;
@@ -2763,39 +2906,19 @@ H5O_move_msgs_forward(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
else {
unsigned new_null_msg; /* Message index for new null message */
- /* Point non-null message at null message's space */
- curr_msg->chunkno = null_msg->chunkno;
- curr_msg->raw = null_msg->raw;
-
- /* Mark non-null message dirty */
- curr_msg->dirty = TRUE;
-
/* Check if null message is large enough to still exist */
- if(null_msg->raw_size - curr_msg->raw_size < H5O_SIZEOF_MSGHDR_OH(oh)) {
+ if((null_msg->raw_size - curr_msg->raw_size) < (size_t)H5O_SIZEOF_MSGHDR_OH(oh)) {
size_t gap_size = null_msg->raw_size - curr_msg->raw_size; /* Size of gap produced */
/* Adjust the size of the null message being eliminated */
- null_msg->raw_size -= gap_size;
+ null_msg->raw_size = curr_msg->raw_size;
/* Add the gap to the chunk */
if(H5O_add_gap(oh, null_msg->chunkno, v, null_msg->raw + null_msg->raw_size, gap_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, FAIL, "can't insert gap in chunk")
- /*
- * Delete null message from list of messages
- */
-
- /* Release any information/memory for message */
- H5O_free_mesg(null_msg);
- null_msg = NULL;
-
- /* Remove null message from list of messages */
- if(v < (oh->nmesgs - 1))
- HDmemmove(&oh->mesg[v], &oh->mesg[v + 1], ((oh->nmesgs - 1) - v) * sizeof(H5O_mesg_t));
-
- /* Decrement # of messages */
- /* (Don't bother reducing size of message array for now -QAK) */
- oh->nmesgs--;
+ /* Re-use message # for new null message taking place of non-null message */
+ new_null_msg = v;
} /* end if */
else {
/* Adjust null message's size & offset */
@@ -2804,31 +2927,31 @@ H5O_move_msgs_forward(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
/* Mark null message dirty */
null_msg->dirty = TRUE;
- } /* end else */
- /* Create new null message for previous location of non-null message */
- if(oh->nmesgs >= oh->alloc_nmesgs)
- if(H5O_alloc_msgs(oh, (size_t)1) < 0)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate more space for messages")
+ /* Create new null message for previous location of non-null message */
+ if(oh->nmesgs >= oh->alloc_nmesgs)
+ if(H5O_alloc_msgs(oh, (size_t)1) < 0)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate more space for messages")
- /* Get message # for new message */
- new_null_msg = oh->nmesgs++;
+ /* Get message # for new null message */
+ new_null_msg = oh->nmesgs++;
+ } /* end else */
- /* Initialize new null message */
+ /* Initialize new null message to take over non-null message's location */
oh->mesg[new_null_msg].type = H5O_MSG_NULL;
oh->mesg[new_null_msg].dirty = TRUE;
oh->mesg[new_null_msg].native = NULL;
oh->mesg[new_null_msg].raw = old_raw;
- oh->mesg[new_null_msg].raw_size = old_raw_size;
+ oh->mesg[new_null_msg].raw_size = curr_msg->raw_size;
oh->mesg[new_null_msg].chunkno = old_chunkno;
/* Check for gap in new null message's chunk */
if(oh->chunk[old_chunkno].gap > 0) {
/* Eliminate the gap in the chunk */
- if(H5O_eliminate_gap(oh, old_chunkno, new_null_msg,
+ if(H5O_eliminate_gap(oh, &oh->mesg[new_null_msg],
((oh->chunk[old_chunkno].image + oh->chunk[old_chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[old_chunkno].gap)),
oh->chunk[old_chunkno].gap) < 0)
- HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, FAIL, "can't insert eliminate in chunk")
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, FAIL, "can't eliminate gap in chunk")
/* Set the gap size to zero for the chunk */
oh->chunk[old_chunkno].gap = 0;
@@ -2839,7 +2962,7 @@ H5O_move_msgs_forward(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
packed_msg = TRUE;
/* Break out of loop */
- /* (If it's possible to move messge to even ealier chunk
+ /* (If it's possible to move message to even earlier chunk
* we'll get it on the next pass - QAK)
*/
break;
@@ -2924,7 +3047,7 @@ H5O_merge_null(H5O_t *oh)
/* Message has been merged */
merged_msg = TRUE;
} /* end if */
- /* Check for second message befre first message */
+ /* Check for second message before first message */
else if((curr_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh)) == (curr_msg2->raw + curr_msg2->raw_size)) {
/* Adjust first message address and extend length to cover second message */
curr_msg->raw -= (H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg2->raw_size);
@@ -3031,7 +3154,7 @@ H5O_remove_empty_chunks(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
/* Decode current continuation message if necessary */
if(NULL == cont_msg->native) {
HDassert(H5O_MSG_CONT->decode);
- cont_msg->native = (H5O_MSG_CONT->decode) (f, dxpl_id, cont_msg->raw);
+ cont_msg->native = (H5O_MSG_CONT->decode)(f, dxpl_id, cont_msg->raw);
if(NULL == cont_msg->native)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, FAIL, "unable to decode message")
} /* end if */
@@ -3049,23 +3172,9 @@ H5O_remove_empty_chunks(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
null_msg_no = u;
deleted_chunkno = null_msg->chunkno;
- /*
- * Convert continuation message into a null message
- */
-
- /* Free space for chunk referred to in the file from the continuation message */
- if(H5O_delete_mesg(f, dxpl_id, cont_msg, TRUE) < 0)
- HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, H5O_ITER_ERROR, "unable to delete file space for object header message")
-
- /* Free any native information */
- H5O_free_mesg(cont_msg);
-
- /* Change message type to nil and zero it */
- cont_msg->type = H5O_MSG_NULL;
- HDmemset(cont_msg->raw, 0, cont_msg->raw_size);
-
- /* Indicate that the continuation message was modified */
- cont_msg->dirty = TRUE;
+ /* Convert continuation message into a null message */
+ if(H5O_release_mesg(f, dxpl_id, oh, cont_msg, TRUE, TRUE) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to convert into null message")
/*
* Remove chunk from object header's data structure
@@ -3155,7 +3264,7 @@ H5O_condense_header(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
rescan_header = FALSE;
/* Scan for messages that can be moved earlier in chunks */
- result = H5O_move_msgs_forward(f, oh, dxpl_id);
+ result = H5O_move_msgs_forward(oh);
if(result < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTPACK, FAIL, "can't move header messages forward")
if(result > 0)
@@ -3175,6 +3284,9 @@ H5O_condense_header(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
if(result > 0)
rescan_header = TRUE;
} while(rescan_header);
+#ifdef H5O_DEBUG
+H5O_assert(oh);
+#endif /* H5O_DEBUG */
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -3263,11 +3375,10 @@ H5O_alloc_extend_chunk(H5F_t *f,
/* Determine whether the chunk can be extended */
tri_result = H5MF_can_extend(f, H5FD_MEM_OHDR, oh->chunk[chunkno].addr,
(hsize_t)(oh->chunk[chunkno].size), (hsize_t)delta);
- if(tri_result == FALSE) { /* can't extend -- we are done */
- HGOTO_DONE(FALSE);
- } else if(tri_result != TRUE) { /* system error */
+ if(tri_result == FALSE) /* can't extend -- we are done */
+ HGOTO_DONE(FALSE)
+ else if(tri_result < 0) /* error */
HGOTO_ERROR(H5E_RESOURCE, H5E_SYSTEM, FAIL, "can't tell if we can extend chunk")
- }
/* If we get this far, we should be able to extend the chunk */
if(H5MF_extend(f, H5FD_MEM_OHDR, oh->chunk[chunkno].addr, (hsize_t)(oh->chunk[chunkno].size), (hsize_t)delta) < 0 )
@@ -3315,7 +3426,7 @@ H5O_alloc_extend_chunk(H5F_t *f,
/* Spin through existing messages, adjusting them */
for(u = 0; u < oh->nmesgs; u++) {
- /* Adjust raw addresses for messages in this chunk to reflect to 'image' address */
+ /* Adjust raw addresses for messages in this chunk to reflect new 'image' address */
if(oh->mesg[u].chunkno == chunkno)
oh->mesg[u].raw = oh->chunk[chunkno].image + (oh->mesg[u].raw - old_image);
@@ -3381,7 +3492,7 @@ H5O_alloc_new_chunk(H5F_t *f,
unsigned idx; /*message number */
uint8_t *p = NULL; /*ptr into new chunk */
H5O_cont_t *cont = NULL; /*native continuation message */
- int chunkno;
+ unsigned chunkno; /* Chunk allocated */
haddr_t new_chunk_addr;
unsigned u; /* Local index variable */
unsigned ret_value; /* Return value */
@@ -3497,7 +3608,7 @@ H5O_alloc_new_chunk(H5F_t *f,
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "memory allocation failed")
/* If this is a later version of the object header format, put the magic
- * # at the beginning of the chunk
+ * # at the beginning of the chunk image.
*/
if(oh->version > H5O_VERSION_1) {
HDmemcpy(p, H5O_CHK_MAGIC, (size_t)H5O_SIZEOF_MAGIC);
@@ -3516,30 +3627,35 @@ H5O_alloc_new_chunk(H5F_t *f,
* to new chunk, if necessary.
*/
if(found_null < 0) {
+ H5O_mesg_t *null_msg; /* Pointer to new null message */
+
/* Create null message for space that message to copy currently occupies */
- found_null = u = oh->nmesgs++;
- oh->mesg[u].type = H5O_MSG_NULL;
- oh->mesg[u].dirty = TRUE;
- oh->mesg[u].native = NULL;
- oh->mesg[u].raw = oh->mesg[found_other].raw;
- oh->mesg[u].raw_size = oh->mesg[found_other].raw_size;
- oh->mesg[u].chunkno = oh->mesg[found_other].chunkno;
-
- /* Copy the message to the new location */
- HDmemcpy(p + H5O_SIZEOF_MSGHDR_OH(oh),
- oh->mesg[found_other].raw,
- oh->mesg[found_other].raw_size);
+ found_null = oh->nmesgs++;
+ null_msg = &(oh->mesg[found_null]);
+ null_msg->type = H5O_MSG_NULL;
+ null_msg->dirty = TRUE;
+ null_msg->native = NULL;
+ null_msg->raw = oh->mesg[found_other].raw;
+ null_msg->raw_size = oh->mesg[found_other].raw_size;
+ null_msg->chunkno = oh->mesg[found_other].chunkno;
+
+ /* Copy the message to move to its new location */
+ /* (Chunk is already dirty, no need to mark it) */
+ HDmemcpy(p, oh->mesg[found_other].raw - H5O_SIZEOF_MSGHDR_OH(oh),
+ oh->mesg[found_other].raw_size + H5O_SIZEOF_MSGHDR_OH(oh));
+
+ /* Switch message to point to new location */
oh->mesg[found_other].raw = p + H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[found_other].chunkno = chunkno;
- oh->mesg[found_other].dirty = TRUE;
/* Account for copied message in new chunk */
p += H5O_SIZEOF_MSGHDR_OH(oh) + oh->mesg[found_other].raw_size;
size -= H5O_SIZEOF_MSGHDR_OH(oh) + oh->mesg[found_other].raw_size;
} /* end if */
+ HDassert(found_null >= 0);
/* Create null message for [rest of] space in new chunk */
- /* (except for chunk's magic # & checksum) */
+ /* (account for chunk's magic # & checksum) */
idx = oh->nmesgs++;
oh->mesg[idx].type = H5O_MSG_NULL;
oh->mesg[idx].dirty = TRUE;
@@ -3549,35 +3665,16 @@ H5O_alloc_new_chunk(H5F_t *f,
(H5O_SIZEOF_CHKHDR_OH(oh) + H5O_SIZEOF_MSGHDR_OH(oh));
oh->mesg[idx].chunkno = chunkno;
- /*
- * If the null message that will receive the continuation message
- * is larger than the continuation message, then split it into
- * two null messages.
- */
- if(oh->mesg[found_null].raw_size > cont_size) {
- u = oh->nmesgs++;
- oh->mesg[u].type = H5O_MSG_NULL;
- oh->mesg[u].dirty = TRUE;
- oh->mesg[u].native = NULL;
- oh->mesg[u].raw = oh->mesg[found_null].raw +
- (cont_size + H5O_SIZEOF_MSGHDR_OH(oh));
- oh->mesg[u].raw_size = oh->mesg[found_null].raw_size -
- (cont_size + H5O_SIZEOF_MSGHDR_OH(oh));
- oh->mesg[u].chunkno = oh->mesg[found_null].chunkno;
-
- oh->mesg[found_null].dirty = TRUE;
- oh->mesg[found_null].raw_size = cont_size;
- } /* end if */
-
- /* Initialize the continuation message */
- oh->mesg[found_null].type = H5O_MSG_CONT;
- oh->mesg[found_null].dirty = TRUE;
+ /* Initialize the continuation information */
if(NULL == (cont = H5FL_MALLOC(H5O_cont_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "memory allocation failed")
cont->addr = oh->chunk[chunkno].addr;
cont->size = oh->chunk[chunkno].size;
cont->chunkno = chunkno;
- oh->mesg[found_null].native = cont;
+
+ /* Split the null message and point at continuation message */
+ if(H5O_alloc_null(oh, (unsigned)found_null, H5O_MSG_CONT, cont, cont_size) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, UFAIL, "can't split null message")
/* Set return value */
ret_value = idx;
@@ -3601,70 +3698,73 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5O_eliminate_gap(H5O_t *oh, unsigned chunkno, unsigned idx,
- uint8_t *gap_loc, size_t gap_size)
+H5O_eliminate_gap(H5O_t *oh, H5O_mesg_t *mesg, uint8_t *gap_loc, size_t gap_size)
{
uint8_t *move_start, *move_end; /* Pointers to area of messages to move */
hbool_t null_before_gap; /* Flag whether the null message is before the gap or not */
- unsigned u; /* Local index variable */
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_eliminate_gap)
/* check args */
HDassert(oh);
HDassert(oh->version > H5O_VERSION_1);
+ HDassert(mesg);
HDassert(gap_loc);
HDassert(gap_size);
/* Check if the null message is before or after the gap produced */
- null_before_gap = (hbool_t)(oh->mesg[idx].raw < gap_loc);
+ null_before_gap = (hbool_t)(mesg->raw < gap_loc);
/* Set up information about region of messages to move */
if(null_before_gap) {
- move_start = oh->mesg[idx].raw + oh->mesg[idx].raw_size;
+ move_start = mesg->raw + mesg->raw_size;
move_end = gap_loc;
} /* end if */
else {
move_start = gap_loc + gap_size;
- move_end = oh->mesg[idx].raw - H5O_SIZEOF_MSGHDR_OH(oh);
+ move_end = mesg->raw - H5O_SIZEOF_MSGHDR_OH(oh);
} /* end else */
- HDassert(move_end > move_start);
- /* Look for other messages that will move, to adjust raw pointers in chunk */
- for(u = 0; u < oh->nmesgs; u++) {
- uint8_t *msg_start; /* Start of encoded message in chunk */
-
- msg_start = oh->mesg[u].raw - H5O_SIZEOF_MSGHDR_OH(oh);
- if(oh->mesg[u].chunkno == chunkno
- && (msg_start >= move_start && msg_start < move_end)) {
- /* Move message's raw pointer in appropriate direction */
- if(null_before_gap)
- oh->mesg[u].raw += gap_size;
- else
- oh->mesg[u].raw -= gap_size;
- } /* end if */
- } /* end for */
+ /* Check for messages between null message and gap */
+ if(move_end > move_start) {
+ unsigned u; /* Local index variable */
+
+ /* Look for messages that need to move, to adjust raw pointers in chunk */
+ for(u = 0; u < oh->nmesgs; u++) {
+ uint8_t *msg_start; /* Start of encoded message in chunk */
+
+ msg_start = oh->mesg[u].raw - H5O_SIZEOF_MSGHDR_OH(oh);
+ if(oh->mesg[u].chunkno == mesg->chunkno
+ && (msg_start >= move_start && msg_start < move_end)) {
+ /* Move message's raw pointer in appropriate direction */
+ if(null_before_gap)
+ oh->mesg[u].raw += gap_size;
+ else
+ oh->mesg[u].raw -= gap_size;
+ } /* end if */
+ } /* end for */
- /* Slide raw message info in chunk image */
- if(null_before_gap)
- /* Slide messages down */
- HDmemmove(move_start, move_start + gap_size, (size_t)(move_end - move_start));
- else {
- /* Slide messages up */
- HDmemmove(move_start - gap_size, move_start, (size_t)(move_end - move_start));
+ /* Slide raw message info in chunk image */
+ if(null_before_gap)
+ /* Slide messages down */
+ HDmemmove(move_start + gap_size, move_start, (size_t)(move_end - move_start));
+ else {
+ /* Slide messages up */
+ HDmemmove(move_start - gap_size, move_start, (size_t)(move_end - move_start));
- /* Adjust start of null message */
- oh->mesg[idx].raw -= gap_size;
- } /* end else */
+ /* Adjust start of null message */
+ mesg->raw -= gap_size;
+ } /* end else */
+ } /* end if */
/* Zero out addition to null message */
- HDmemset(oh->mesg[idx].raw + oh->mesg[idx].raw_size, 0, gap_size);
+ HDmemset(mesg->raw + mesg->raw_size, 0, gap_size);
/* Adjust size of null message */
- oh->mesg[idx].raw_size += gap_size;
+ mesg->raw_size += gap_size;
/* Mark null message as dirty */
- oh->mesg[idx].dirty = TRUE;
+ mesg->dirty = TRUE;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* H5O_eliminate_gap() */
@@ -3710,7 +3810,7 @@ H5O_add_gap(H5O_t *oh, unsigned chunkno, unsigned idx,
HDassert(oh->chunk[chunkno].gap == 0);
/* Eliminate the gap in the chunk */
- if(H5O_eliminate_gap(oh, chunkno, u, new_gap_loc, new_gap_size) < 0)
+ if(H5O_eliminate_gap(oh, &oh->mesg[u], new_gap_loc, new_gap_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, FAIL, "can't eliminate gap in chunk")
/* Set flag to indicate that the gap was handled */
@@ -3733,7 +3833,7 @@ H5O_add_gap(H5O_t *oh, unsigned chunkno, unsigned idx,
new_gap_size += oh->chunk[chunkno].gap;
/* Merging with existing gap will allow for a new null message */
- if(new_gap_size >= H5O_SIZEOF_MSGHDR_OH(oh)) {
+ if(new_gap_size >= (size_t)H5O_SIZEOF_MSGHDR_OH(oh)) {
H5O_mesg_t *null_msg; /* Pointer to new null message */
/* Check if we need to extend message table to hold the new null message */
@@ -3794,7 +3894,6 @@ H5O_alloc(H5F_t *f,
size_t size,
unsigned * oh_flags_ptr)
{
- H5O_mesg_t *msg; /* Pointer to newly allocated message */
size_t aligned_size = H5O_ALIGN_OH(oh, size);
unsigned idx; /* Index of message which fits allocation */
unsigned ret_value; /* Return value */
@@ -3843,58 +3942,16 @@ H5O_alloc(H5F_t *f,
HGOTO_ERROR(H5E_OHDR, H5E_NOSPACE, UFAIL, "unable to create a new object header data chunk")
} /* end if */
- /* Set pointer to newly allocated message */
- msg = &(oh->mesg[idx]);
-
- /* Do we need to split the existing null message? */
- if(msg->raw_size > aligned_size) {
- size_t mesg_size = aligned_size + H5O_SIZEOF_MSGHDR_OH(oh); /* Total size of newly allocated message */
-
- /* Check for producing a gap in the chunk */
- if((msg->raw_size - aligned_size) < H5O_SIZEOF_MSGHDR_OH(oh)) {
- size_t gap_size = msg->raw_size - aligned_size; /* Size of gap produced */
-
- /* Adjust the size of the null message being eliminated */
- msg->raw_size -= gap_size;
-
- /* Add the gap to the chunk */
- if(H5O_add_gap(oh, msg->chunkno, idx, msg->raw + msg->raw_size, gap_size) < 0)
- HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, UFAIL, "can't insert gap in chunk")
- } /* end if */
- else {
- H5O_mesg_t *null_msg; /* Pointer to new null message */
-
- /* Check if we need to extend message table to hold the new null message */
- if(oh->nmesgs >= oh->alloc_nmesgs) {
- if(H5O_alloc_msgs(oh, (size_t)1) < 0)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "can't allocate more space for messages")
-
- /* "Retarget" local 'msg' pointer into newly re-allocated array of messages */
- msg = &oh->mesg[idx];
- } /* end if */
-
- /* Create new null message, with the tail of the previous null message */
- null_msg = &(oh->mesg[oh->nmesgs++]);
- null_msg->type = H5O_MSG_NULL;
- null_msg->dirty = TRUE;
- null_msg->native = NULL;
- null_msg->raw = msg->raw + mesg_size;
- null_msg->raw_size = msg->raw_size - mesg_size;
- null_msg->chunkno = msg->chunkno;
- } /* end else */
-
- /* Set the size of the new "real" message */
- msg->raw_size = aligned_size;
- } /* end if */
-
- /* Initialize the new message */
- msg->type = type;
- msg->dirty = TRUE;
- msg->native = NULL;
+ /* Split the null message and point at continuation message */
+ if(H5O_alloc_null(oh, idx, type, NULL, aligned_size) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, UFAIL, "can't split null message")
/* Mark the object header as modified */
*oh_flags_ptr |= H5AC__DIRTIED_FLAG;
+#ifdef H5O_DEBUG
+H5O_assert(oh);
+#endif /* H5O_DEBUG */
/* Set return value */
ret_value = idx;
@@ -4925,9 +4982,10 @@ H5O_copy_header_real(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out */,
/* Copy basic information about messages */
HDmemcpy(oh_dst->mesg, oh_src->mesg, oh_dst->alloc_nmesgs * sizeof(H5O_mesg_t));
- /* "pre copy" pass over messages, to gather information for actual message copy operation */
- /* (for messages which depend on information from other messages) */
- /* (also resets various destination message information) */
+ /* Set up destination message raw image pointer information */
+ /* (must be done before "pre copy" pass, so that if a message is deleted,
+ * the raw message information in a chunk can be moved around safely)
+ */
for(mesgno = 0; mesgno < oh_src->nmesgs; mesgno++) {
/* Set up convenience variables */
mesg_src = &(oh_src->mesg[mesgno]);
@@ -4937,16 +4995,24 @@ H5O_copy_header_real(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out */,
HDassert(!mesg_src->dirty); /* Should be cleared by earlier call to flush messages */
/* Fix up destination message pointers */
- mesg_dst->native = NULL;
mesg_dst->raw = oh_dst->chunk[mesg_dst->chunkno].image + (mesg_src->raw - oh_src->chunk[mesg_src->chunkno].image);
+ mesg_dst->native = NULL;
+ } /* end for */
+
+ /* "pre copy" pass over messages, to gather information for actual message copy operation */
+ /* (for messages which depend on information from other messages) */
+ for(mesgno = 0; mesgno < oh_src->nmesgs; mesgno++) {
+ /* Set up convenience variables */
+ mesg_src = &(oh_src->mesg[mesgno]);
+ mesg_dst = &(oh_dst->mesg[mesgno]);
/* Check for shared message to operate on */
if(mesg_src->flags & H5O_FLAG_SHARED)
copy_type = H5O_MSG_SHARED;
else
copy_type = mesg_src->type;
-
HDassert(copy_type);
+
if(copy_type->pre_copy_file) {
hbool_t deleted = FALSE; /* Flag to indicate that the message should be deleted from the destination */
@@ -4961,23 +5027,15 @@ H5O_copy_header_real(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out */,
HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, FAIL, "unable to decode a message")
} /* end if (NULL == mesg_src->native) */
- /* Perform "pre copy" operation on messge */
+ /* Perform "pre copy" operation on message */
if((copy_type->pre_copy_file)(oloc_src->file, mesg_src->type, mesg_src->native, &deleted, cpy_info, udata) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to perform 'pre copy' operation on message")
/* Check if the message should be deleted in the destination */
if(deleted) {
- /* Change ID of destination message to NULL */
- mesg_dst->type = H5O_MSG_NULL;
-
- /* Clear message data to 0 */
- HDmemset(mesg_dst->raw, 0, mesg_dst->raw_size);
-
- /* Clear message flags */
- mesg_dst->flags = 0;
-
- /* Mark message as dirty */
- mesg_dst->dirty = TRUE;
+ /* Convert message into a null message */
+ if(H5O_release_mesg(oloc_dst->file, dxpl_id, oh_dst, mesg_dst, FALSE, FALSE) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to convert into null message")
} /* end if */
} /* end if */
} /* end for */
@@ -4996,9 +5054,9 @@ H5O_copy_header_real(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out */,
copy_type = H5O_MSG_SHARED;
else
copy_type = mesg_dst->type;
+ HDassert(copy_type);
/* copy this message into destination file */
- HDassert(copy_type);
if(copy_type->copy_file) {
/*
* Decode the message if necessary. If the message is shared then do
@@ -5063,14 +5121,14 @@ H5O_copy_header_real(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out */,
copy_type = H5O_MSG_SHARED;
else
copy_type = mesg_dst->type;
-
HDassert(copy_type);
+
if(copy_type->post_copy_file && mesg_src->native) {
/* Sanity check destination message */
HDassert(mesg_dst->type == mesg_src->type);
HDassert(mesg_dst->native);
- /* Perform "post copy" operation on messge */
+ /* Perform "post copy" operation on message */
if((copy_type->post_copy_file)(oloc_src, mesg_src->native, oloc_dst,
mesg_dst->native, dxpl_id, cpy_info) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to perform 'post copy' operation on message")
@@ -5469,6 +5527,81 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_copy_expand_ref() */
+#ifdef H5O_DEBUG
+
+/*-------------------------------------------------------------------------
+ * Function: H5O_assert
+ *
+ * Purpose: Sanity check the information for an object header data
+ * structure.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * koziol@hdfgroup.org
+ * Oct 17 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5O_assert(const H5O_t *oh)
+{
+ H5O_mesg_t *curr_msg; /* Pointer to current message to examine */
+ H5O_mesg_t *tmp_msg; /* Pointer to temporary message to examine */
+ unsigned u, v; /* Local index variables */
+
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_assert)
+
+ /* Loop over all chunks in object header */
+ for(u = 0; u < oh->nchunks; u++) {
+ /* Check for valid raw data image */
+ HDassert(oh->chunk[u].image);
+ HDassert(oh->chunk[u].size > (size_t)H5O_SIZEOF_CHKHDR_OH(oh));
+
+ /* All chunks must be allocated on disk */
+ HDassert(H5F_addr_defined(oh->chunk[u].addr));
+
+ /* Version specific checks */
+ if(oh->version > H5O_VERSION_1) {
+ /* Make certain that the magic number is correct for each chunk */
+ HDassert(!HDmemcmp(oh->chunk[u].image, (u == 0 ? H5O_HDR_MAGIC : H5O_CHK_MAGIC), H5O_SIZEOF_MAGIC));
+
+ /* Check for valid gap size */
+ HDassert(oh->chunk[u].gap < (size_t)H5O_SIZEOF_MSGHDR_OH(oh));
+ } /* end if */
+ else
+ /* Gaps should never occur in version 1 of the format */
+ HDassert(oh->chunk[u].gap == 0);
+ } /* end for */
+
+ /* Loop over all messages in object header */
+ for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
+ /* Make certain that the message is in a valid chunk */
+ HDassert(curr_msg->chunkno < oh->nchunks);
+
+ /* Make certain null messages aren't in chunks with gaps */
+ if(H5O_NULL_ID == curr_msg->type->id)
+ HDassert(oh->chunk[curr_msg->chunkno].gap == 0);
+
+ /* Make certain that the message is completely in a chunk message area */
+ HDassert(curr_msg->raw_size <= (oh->chunk[curr_msg->chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[curr_msg->chunkno].gap));
+ if(curr_msg->chunkno == 0)
+ HDassert(curr_msg->raw >= oh->chunk[curr_msg->chunkno].image + (H5O_SIZEOF_HDR_OH(oh) - H5O_SIZEOF_CHKSUM_OH(oh)));
+ else
+ HDassert(curr_msg->raw >= oh->chunk[curr_msg->chunkno].image + (H5O_SIZEOF_CHKHDR_OH(oh) - H5O_SIZEOF_CHKSUM_OH(oh)));
+ HDassert(curr_msg->raw + curr_msg->raw_size <= (oh->chunk[curr_msg->chunkno].image + oh->chunk[curr_msg->chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[curr_msg->chunkno].gap));
+
+ /* Make certain that no other messages overlap this message */
+ for(v = 0, tmp_msg = &oh->mesg[0]; v < oh->nmesgs; v++, tmp_msg++) {
+ if(u != v)
+ HDassert(!(tmp_msg->raw >= curr_msg->raw && tmp_msg->raw < (curr_msg->raw + curr_msg->raw_size)));
+ } /* end for */
+ } /* end for */
+
+ FUNC_LEAVE_NOAPI(SUCCEED)
+} /* end H5O_assert() */
+#endif /* H5O_DEBUG */
+
/*-------------------------------------------------------------------------
* Function: H5O_debug_id
@@ -5492,25 +5625,25 @@ H5O_debug_id(unsigned type_id, H5F_t *f, hid_t dxpl_id, const void *mesg, FILE *
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
herr_t ret_value; /* Return value */
- FUNC_ENTER_NOAPI(H5O_debug_id,FAIL);
+ FUNC_ENTER_NOAPI(H5O_debug_id,FAIL)
/* Check args */
- assert(type_id < NELMTS(H5O_msg_class_g));
- type=H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
- assert(type);
- assert(type->debug);
- assert(f);
- assert(mesg);
- assert(stream);
- assert(indent >= 0);
- assert(fwidth >= 0);
+ HDassert(type_id < NELMTS(H5O_msg_class_g));
+ type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
+ HDassert(type);
+ HDassert(type->debug);
+ HDassert(f);
+ HDassert(mesg);
+ HDassert(stream);
+ HDassert(indent >= 0);
+ HDassert(fwidth >= 0);
/* Call the debug method in the class */
- if ((ret_value = (type->debug)(f, dxpl_id, mesg, stream, indent, fwidth)) < 0)
+ if((ret_value = (type->debug)(f, dxpl_id, mesg, stream, indent, fwidth)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_BADTYPE, FAIL, "unable to debug message")
done:
- FUNC_LEAVE_NOAPI(ret_value);
+ FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_debug_id() */
diff --git a/src/H5Ocache.c b/src/H5Ocache.c
index 1ac9550..b2e64ab 100644
--- a/src/H5Ocache.c
+++ b/src/H5Ocache.c
@@ -357,7 +357,7 @@ H5O_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, const void UNUSED * _udata1,
/* Check for magic # on chunks > 0 in later versions of the format */
if(chunkno > 0 && oh->version > H5O_VERSION_1) {
/* Magic number */
- if(!HDmemcmp(p, H5O_CHK_MAGIC, (size_t)H5O_SIZEOF_MAGIC))
+ if(HDmemcmp(p, H5O_CHK_MAGIC, (size_t)H5O_SIZEOF_MAGIC))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "wrong object header chunk signature")
p += H5O_SIZEOF_MAGIC;
} /* end if */
@@ -493,15 +493,18 @@ H5O_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, const void UNUSED * _udata1,
if((oh->nmesgs + skipped_msgs + merged_null_msgs) != nmesgs)
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "corrupt object header - too few messages")
+#ifdef H5O_DEBUG
+H5O_assert(oh);
+#endif /* H5O_DEBUG */
+
/* Set return value */
ret_value = oh;
done:
/* Release the [possibly partially initialized] object header on errors */
- if(!ret_value && oh) {
+ if(!ret_value && oh)
if(H5O_dest(f,oh) < 0)
HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, NULL, "unable to destroy object header data")
- } /* end if */
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_load() */
@@ -543,6 +546,10 @@ H5O_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t UNUSED addr, H5O_t *
uint8_t *p; /* Pointer to object header prefix buffer */
unsigned u; /* Local index variable */
+#ifdef H5O_DEBUG
+H5O_assert(oh);
+#endif /* H5O_DEBUG */
+
/* Point to raw data 'image' for first chunk, which has room for the prefix */
p = oh->chunk[0].image;
@@ -552,7 +559,7 @@ H5O_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t UNUSED addr, H5O_t *
* modified */
if(oh->version > H5O_VERSION_1) {
/* Verify magic number */
- HDassert(!HDmemcmp(oh->chunk[0].image, H5O_HDR_MAGIC, H5O_SIZEOF_MAGIC));
+ HDassert(!HDmemcmp(p, H5O_HDR_MAGIC, H5O_SIZEOF_MAGIC));
p += H5O_SIZEOF_MAGIC;
/* Version */
diff --git a/src/H5Opkg.h b/src/H5Opkg.h
index 2b52b79..b2a5dd6 100644
--- a/src/H5Opkg.h
+++ b/src/H5Opkg.h
@@ -41,7 +41,7 @@
/* The latest version of the format. Look through the 'flush'
* and 'size' callback for places to change when updating this. */
-#define H5O_VERSION_LATEST H5O_VERSION_1
+#define H5O_VERSION_LATEST H5O_VERSION_2
/*
* Align messages on 8-byte boundaries because we would like to copy the
@@ -332,6 +332,9 @@ H5_DLL void * H5O_read_real(const H5O_loc_t *loc, const H5O_msg_class_t *type,
int sequence, void *mesg, hid_t dxpl_id);
H5_DLL herr_t H5O_free_mesg(H5O_mesg_t *mesg);
H5_DLL void * H5O_free_real(const H5O_msg_class_t *type, void *mesg);
+#ifdef H5O_DEBUG
+H5_DLL herr_t H5O_assert(const H5O_t *oh);
+#endif /* H5O_DEBUG */
H5_DLL herr_t H5O_debug_real(H5F_t *f, hid_t dxpl_id, H5O_t *oh, haddr_t addr, FILE *stream, int indent, int fwidth);
/* Shared object operators */