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authorkmu <kmu@hdfgroup.org>2019-12-06 15:51:06 (GMT)
committerkmu <kmu@hdfgroup.org>2019-12-06 15:51:06 (GMT)
commit1f871e23b7c3fdec925004f2cd39d3a2cdd8decb (patch)
tree0f267b01ff7617ee44c904fc6ad7cbd4d13303f9 /src
parent463199464f2b5c9f798b23ffe3f1db139b68f4d2 (diff)
parent107bcbd3dfff51895c99ea3ff71afa0ce693a956 (diff)
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Merge branch 'develop' of https://git.hdfgroup.org/scm/hdffv/hdf5 into develop
Diffstat (limited to 'src')
-rw-r--r--src/H5D.c31
-rw-r--r--src/H5Dint.c79
-rw-r--r--src/H5Dpkg.h2
-rw-r--r--src/H5FD.c4
-rw-r--r--src/H5Fsuper.c2
-rw-r--r--src/H5MF.c48
-rw-r--r--src/H5MFdbg.c6
-rw-r--r--src/H5Mpublic.h3
-rw-r--r--src/H5O.c4
-rw-r--r--src/H5Ocopy_ref.c8
-rw-r--r--src/H5Ofsinfo.c10
-rw-r--r--src/H5Pdcpl.c8
-rw-r--r--src/H5R.c58
-rw-r--r--src/H5Rdeprec.c13
-rw-r--r--src/H5Rint.c20
-rw-r--r--src/H5Rpublic.h14
-rw-r--r--src/H5Shyper.c5
-rw-r--r--src/H5Spkg.h7
-rw-r--r--src/H5Sselect.c215
-rw-r--r--src/H5T.c1
-rw-r--r--src/H5VLconnector.h6
-rw-r--r--src/H5VLnative_object.c2
-rw-r--r--src/H5private.h7
-rw-r--r--src/hdf5-lin.lnt3
-rw-r--r--src/hdf5.lnt7
25 files changed, 350 insertions, 213 deletions
diff --git a/src/H5D.c b/src/H5D.c
index a2e6f0a..7c68127 100644
--- a/src/H5D.c
+++ b/src/H5D.c
@@ -736,7 +736,7 @@ herr_t
H5Dvlen_get_buf_size(hid_t dataset_id, hid_t type_id, hid_t space_id,
hsize_t *size)
{
- H5D_vlen_bufsize_t vlen_bufsize = {0, 0, 0, 0, 0, 0};
+ H5D_vlen_bufsize_t vlen_bufsize = {NULL, H5I_INVALID_HID, H5I_INVALID_HID, NULL, NULL, 0, H5P_DATASET_XFER_DEFAULT};
H5VL_object_t *vol_obj; /* Dataset for this operation */
H5S_t *mspace = NULL; /* Memory dataspace */
char bogus; /* bogus value to pass to H5Diterate() */
@@ -763,8 +763,6 @@ H5Dvlen_get_buf_size(hid_t dataset_id, hid_t type_id, hid_t space_id,
/* Save the dataset */
vlen_bufsize.dset_vol_obj = vol_obj;
- vlen_bufsize.fspace_id = H5I_INVALID_HID;
- vlen_bufsize.mspace_id = H5I_INVALID_HID;
/* Get a copy of the dataset's dataspace */
if(H5VL_dataset_get(vol_obj, H5VL_DATASET_GET_SPACE, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &vlen_bufsize.fspace_id) < 0)
@@ -786,6 +784,22 @@ H5Dvlen_get_buf_size(hid_t dataset_id, hid_t type_id, hid_t space_id,
if(H5CX_set_vlen_alloc_info(H5D__vlen_get_buf_size_alloc, &vlen_bufsize, NULL, NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set VL data allocation routine")
+ /* If we are not using the native VOL connector we must also set this
+ * property on the DXPL since the context is not visible to the connector
+ * and will be ignored if the connector re-enters the library */
+ if(vol_obj->connector->cls->value != H5VL_NATIVE_VALUE) {
+ H5P_genplist_t *dxpl;
+
+ if(NULL == (dxpl = (H5P_genplist_t *)H5I_object(H5P_DATASET_XFER_DEFAULT)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get default DXPL")
+ if((vlen_bufsize.dxpl_id = H5P_copy_plist(dxpl, TRUE)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, H5I_INVALID_HID, "can't copy property list");
+ if(NULL == (dxpl = (H5P_genplist_t *)H5I_object(vlen_bufsize.dxpl_id)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get copied DXPL")
+ if(H5P_set_vlen_mem_manager(dxpl, H5D__vlen_get_buf_size_alloc, &vlen_bufsize, NULL, NULL) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set VL data allocation routine on DXPL")
+ } /* end if */
+
/* Set the initial number of bytes required */
vlen_bufsize.size = 0;
@@ -805,14 +819,17 @@ done:
if(mspace && H5S_close(mspace) < 0)
HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release dataspace")
- if(vlen_bufsize.fspace_id && H5I_dec_app_ref(vlen_bufsize.fspace_id) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDEC, FAIL, "problem freeing id")
- if(vlen_bufsize.mspace_id && H5I_dec_app_ref(vlen_bufsize.mspace_id) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDEC, FAIL, "problem freeing id")
+ if(vlen_bufsize.fspace_id >= 0 && H5I_dec_app_ref(vlen_bufsize.fspace_id) < 0)
+ HDONE_ERROR(H5E_DATASPACE, H5E_CANTDEC, FAIL, "problem freeing id")
+ if(vlen_bufsize.mspace_id >= 0 && H5I_dec_app_ref(vlen_bufsize.mspace_id) < 0)
+ HDONE_ERROR(H5E_DATASPACE, H5E_CANTDEC, FAIL, "problem freeing id")
if(vlen_bufsize.fl_tbuf != NULL)
vlen_bufsize.fl_tbuf = H5FL_BLK_FREE(vlen_fl_buf, vlen_bufsize.fl_tbuf);
if(vlen_bufsize.vl_tbuf != NULL)
vlen_bufsize.vl_tbuf = H5FL_BLK_FREE(vlen_vl_buf, vlen_bufsize.vl_tbuf);
+ if(vlen_bufsize.dxpl_id != H5P_DATASET_XFER_DEFAULT)
+ if(H5I_dec_app_ref(vlen_bufsize.dxpl_id) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, FAIL, "can't close property list")
FUNC_LEAVE_API(ret_value)
} /* end H5Dvlen_get_buf_size() */
diff --git a/src/H5Dint.c b/src/H5Dint.c
index ee90db2..c3d4398 100644
--- a/src/H5Dint.c
+++ b/src/H5Dint.c
@@ -49,7 +49,7 @@
/********************/
/* General stuff */
-static H5D_shared_t *H5D__new(hid_t dcpl_id, hbool_t creating, hbool_t vl_type);
+static H5D_shared_t *H5D__new(hid_t dcpl_id, hid_t dapl, hbool_t creating, hbool_t vl_type);
static herr_t H5D__init_type(H5F_t *file, const H5D_t *dset, hid_t type_id, const H5T_t *type);
static herr_t H5D__cache_dataspace_info(const H5D_t *dset);
static herr_t H5D__init_space(H5F_t *file, const H5D_t *dset, const H5S_t *space);
@@ -465,7 +465,7 @@ done:
*-------------------------------------------------------------------------
*/
static H5D_shared_t *
-H5D__new(hid_t dcpl_id, hbool_t creating, hbool_t vl_type)
+H5D__new(hid_t dcpl_id, hid_t dapl_id, hbool_t creating, hbool_t vl_type)
{
H5D_shared_t *new_dset = NULL; /* New dataset object */
H5P_genplist_t *plist; /* Property list created */
@@ -496,6 +496,19 @@ H5D__new(hid_t dcpl_id, hbool_t creating, hbool_t vl_type)
new_dset->dcpl_id = H5P_copy_plist(plist, FALSE);
} /* end else */
+ if(!vl_type && creating && dapl_id == H5P_DATASET_ACCESS_DEFAULT) {
+ if(H5I_inc_ref(dapl_id, FALSE) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINC, NULL, "can't increment default DAPL ID")
+ new_dset->dapl_id = dapl_id;
+ } /* end if */
+ else {
+ /* Get the property list */
+ if(NULL == (plist = (H5P_genplist_t *)H5I_object(dapl_id)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a property list")
+
+ new_dset->dapl_id = H5P_copy_plist(plist, FALSE);
+ } /* end else */
+
/* Set return value */
ret_value = new_dset;
@@ -504,6 +517,8 @@ done:
if(new_dset != NULL) {
if(new_dset->dcpl_id != 0 && H5I_dec_ref(new_dset->dcpl_id) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, NULL, "can't decrement temporary datatype ID")
+ if(new_dset->dapl_id != 0 && H5I_dec_ref(new_dset->dapl_id) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, NULL, "can't decrement temporary datatype ID")
new_dset = H5FL_FREE(H5D_shared_t, new_dset);
} /* end if */
@@ -1225,9 +1240,8 @@ H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space, hid_t dcpl_id,
H5G_loc_reset(&dset_loc);
/* Initialize the shared dataset space */
- if(NULL == (new_dset->shared = H5D__new(dcpl_id, TRUE, has_vl_type)))
+ if(NULL == (new_dset->shared = H5D__new(dcpl_id, dapl_id, TRUE, has_vl_type)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
-
/* Copy & initialize datatype for dataset */
if(H5D__init_type(file, new_dset, type_id, type) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "can't copy datatype")
@@ -1320,14 +1334,14 @@ H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space, hid_t dcpl_id,
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "unable to construct layout information")
/* Update the dataset's object header info. */
- if(H5D__update_oh_info(file, new_dset, dapl_id) < 0)
+ if(H5D__update_oh_info(file, new_dset, new_dset->shared->dapl_id) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "can't update the metadata cache")
/* Indicate that the layout information was initialized */
layout_init = TRUE;
/* Set up append flush parameters for the dataset */
- if(H5D__append_flush_setup(new_dset, dapl_id) < 0)
+ if(H5D__append_flush_setup(new_dset, new_dset->shared->dapl_id) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "unable to set up flush append property")
/* Set the external file prefix */
@@ -1382,6 +1396,8 @@ done:
} /* end if */
if(new_dset->shared->dcpl_id != 0 && H5I_dec_ref(new_dset->shared->dcpl_id) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, NULL, "unable to decrement ref count on property list")
+ if(new_dset->shared->dapl_id != 0 && H5I_dec_ref(new_dset->shared->dapl_id) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, NULL, "unable to decrement ref count on property list")
new_dset->shared->extfile_prefix = (char *)H5MM_xfree(new_dset->shared->extfile_prefix);
new_dset->shared->vds_prefix = (char *)H5MM_xfree(new_dset->shared->vds_prefix);
new_dset->shared = H5FL_FREE(H5D_shared_t, new_dset->shared);
@@ -1686,7 +1702,7 @@ H5D__open_oid(H5D_t *dataset, hid_t dapl_id)
HDassert(dataset);
/* (Set the 'vl_type' parameter to FALSE since it doesn't matter from here) */
- if(NULL == (dataset->shared = H5D__new(H5P_DATASET_CREATE_DEFAULT, FALSE, FALSE)))
+ if(NULL == (dataset->shared = H5D__new(H5P_DATASET_CREATE_DEFAULT, dapl_id, FALSE, FALSE)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Open the dataset object */
@@ -1968,12 +1984,13 @@ H5D_close(H5D_t *dataset)
if(H5AC_cork(dataset->oloc.file, dataset->oloc.addr, H5AC__UNCORK, NULL) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTUNCORK, FAIL, "unable to uncork an object")
- /* Release datatype, dataspace and creation property list -- there isn't
+ /* Release datatype, dataspace and creation and access property lists -- there isn't
* much we can do if one of these fails, so we just continue.
*/
free_failed |= (H5I_dec_ref(dataset->shared->type_id) < 0) ||
(H5S_close(dataset->shared->space) < 0) ||
- (H5I_dec_ref(dataset->shared->dcpl_id) < 0);
+ (H5I_dec_ref(dataset->shared->dcpl_id) < 0) ||
+ (H5I_dec_ref(dataset->shared->dapl_id) < 0);
/* Remove the dataset from the list of opened objects in the file */
if(H5FO_top_decr(dataset->oloc.file, dataset->oloc.addr) < 0)
@@ -2622,7 +2639,7 @@ H5D__vlen_get_buf_size(void H5_ATTR_UNUSED *elem, hid_t type_id,
HGOTO_ERROR(H5E_DATASET, H5E_CANTCREATE, FAIL, "can't select point")
/* Read in the point (with the custom VL memory allocator) */
- if(H5VL_dataset_read(vol_obj, type_id, vlen_bufsize->mspace_id, vlen_bufsize->fspace_id, H5P_DATASET_XFER_DEFAULT, vlen_bufsize->fl_tbuf, H5_REQUEST_NULL) < 0)
+ if(H5VL_dataset_read(vol_obj, type_id, vlen_bufsize->mspace_id, vlen_bufsize->fspace_id, vlen_bufsize->dxpl_id, vlen_bufsize->fl_tbuf, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read point")
done:
@@ -3428,22 +3445,26 @@ done:
hid_t
H5D_get_access_plist(const H5D_t *dset)
{
- H5P_genplist_t *old_plist; /* Default DAPL */
+ H5P_genplist_t *old_plist; /* Stored DAPL from dset */
H5P_genplist_t *new_plist; /* New DAPL */
+ H5P_genplist_t *def_fapl; /* Default FAPL */
+ H5D_append_flush_t def_append_flush_info = {0}; /* Default append flush property */
+ H5D_rdcc_t def_chunk_info; /* Default chunk cache property */
hid_t new_dapl_id = FAIL;
hid_t ret_value = FAIL;
FUNC_ENTER_NOAPI_NOINIT
- /* Make a copy of the default dataset access property list */
- if(NULL == (old_plist = (H5P_genplist_t *)H5I_object(H5P_LST_DATASET_ACCESS_ID_g)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list")
+ /* Make a copy of the dataset's dataset access property list */
+ if(NULL == (old_plist = (H5P_genplist_t *)H5I_object(dset->shared->dapl_id)))
+ HGOTO_ERROR(H5E_DATASET, H5E_BADTYPE, FAIL, "can't get property list")
if((new_dapl_id = H5P_copy_plist(old_plist, TRUE)) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "can't copy dataset access property list")
if(NULL == (new_plist = (H5P_genplist_t *)H5I_object(new_dapl_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list")
- /* If the dataset is chunked then copy the rdcc & append flush parameters */
+ /* If the dataset is chunked then copy the rdcc & append flush parameters.
+ * Otherwise, use the default values. */
if(dset->shared->layout.type == H5D_CHUNKED) {
if(H5P_set(new_plist, H5D_ACS_DATA_CACHE_NUM_SLOTS_NAME, &(dset->shared->cache.chunk.nslots)) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set data cache number of slots")
@@ -3453,7 +3474,33 @@ H5D_get_access_plist(const H5D_t *dset)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set preempt read chunks")
if(H5P_set(new_plist, H5D_ACS_APPEND_FLUSH_NAME, &dset->shared->append_flush) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set append flush property")
- } /* end if */
+ } else {
+ /* Get the default FAPL */
+ if(NULL == (def_fapl = (H5P_genplist_t *)H5I_object(H5P_LST_FILE_ACCESS_ID_g)))
+ HGOTO_ERROR(H5E_DATASET, H5E_BADTYPE, FAIL, "not a property list")
+
+ /* Set the data cache number of slots to the value of the default FAPL */
+ if (H5P_get(def_fapl, H5D_ACS_DATA_CACHE_NUM_SLOTS_NAME, &def_chunk_info.nslots) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET,FAIL, "can't get data number of slots");
+ if(H5P_set(new_plist, H5D_ACS_DATA_CACHE_NUM_SLOTS_NAME, &def_chunk_info.nslots) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set data cache number of slots")
+
+ /* Set the data cache byte size to the value of the default FAPL */
+ if (H5P_get(def_fapl, H5D_ACS_DATA_CACHE_BYTE_SIZE_NAME, &def_chunk_info.nbytes_max) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET,FAIL, "can't get data cache byte size");
+ if(H5P_set(new_plist, H5D_ACS_DATA_CACHE_BYTE_SIZE_NAME, &def_chunk_info.nbytes_max) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set data cache byte size")
+
+ /* Set the preempt read chunks property to the value of the default FAPL */
+ if (H5P_get(def_fapl, H5D_ACS_PREEMPT_READ_CHUNKS_NAME, &def_chunk_info.w0) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET,FAIL, "can't get preempt read chunks");
+ if(H5P_set(new_plist, H5D_ACS_PREEMPT_READ_CHUNKS_NAME, &def_chunk_info.w0) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set preempt read chunks")
+
+ /* Set the append flush property to its default value */
+ if(H5P_set(new_plist, H5D_ACS_APPEND_FLUSH_NAME, &def_append_flush_info) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set append flush property")
+ }/* end if-else */
/* Set the VDS view & printf gap options */
if(H5P_set(new_plist, H5D_ACS_VDS_VIEW_NAME, &(dset->shared->layout.storage.u.virt.view)) < 0)
diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h
index 723acf9..02121e6 100644
--- a/src/H5Dpkg.h
+++ b/src/H5Dpkg.h
@@ -443,6 +443,7 @@ struct H5D_shared_t {
H5T_t *type; /* Datatype for this dataset */
H5S_t *space; /* Dataspace of this dataset */
hid_t dcpl_id; /* Dataset creation property id */
+ hid_t dapl_id; /* Dataset access property id */
H5D_dcpl_cache_t dcpl_cache; /* Cached DCPL values */
H5O_layout_t layout; /* Data layout */
hbool_t checked_filters;/* TRUE if dataset passes can_apply check */
@@ -523,6 +524,7 @@ typedef struct {
void *fl_tbuf; /* Ptr to the temporary buffer we are using for fixed-length data */
void *vl_tbuf; /* Ptr to the temporary buffer we are using for VL data */
hsize_t size; /* Accumulated number of bytes for the selection */
+ hid_t dxpl_id; /* Dataset transfer property list to pass to dataset read */
} H5D_vlen_bufsize_t;
diff --git a/src/H5FD.c b/src/H5FD.c
index 61969b6..1a4ab4d 100644
--- a/src/H5FD.c
+++ b/src/H5FD.c
@@ -241,7 +241,7 @@ H5FDregister(const H5FD_class_t *cls)
HGOTO_ERROR(H5E_ARGS, H5E_UNINITIALIZED, H5I_INVALID_HID, "'get_eof' method is not defined")
if(!cls->read || !cls->write)
HGOTO_ERROR(H5E_ARGS, H5E_UNINITIALIZED, H5I_INVALID_HID, "'read' and/or 'write' method is not defined")
- for (type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t,type))
+ for (type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; type++)
if(cls->fl_map[type] < H5FD_MEM_NOLIST || cls->fl_map[type] >= H5FD_MEM_NTYPES)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "invalid free-list mapping")
@@ -286,7 +286,7 @@ H5FD_register(const void *_cls, size_t size, hbool_t app_ref)
HDassert(cls->get_eoa && cls->set_eoa);
HDassert(cls->get_eof);
HDassert(cls->read && cls->write);
- for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) {
+ for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; type++) {
HDassert(cls->fl_map[type] >= H5FD_MEM_NOLIST && cls->fl_map[type] < H5FD_MEM_NTYPES);
}
diff --git a/src/H5Fsuper.c b/src/H5Fsuper.c
index f8e8f3f..e5d4cde 100644
--- a/src/H5Fsuper.c
+++ b/src/H5Fsuper.c
@@ -1394,7 +1394,7 @@ H5F__super_init(H5F_t *f)
HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "can't set version of fsinfo")
f->shared->fs_version = fsinfo.version;
- for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype))
+ for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; ptype++)
fsinfo.fs_addr[ptype - 1] = HADDR_UNDEF;
if(H5O_msg_create(&ext_loc, H5O_FSINFO_ID, H5O_MSG_FLAG_DONTSHARE | H5O_MSG_FLAG_MARK_IF_UNKNOWN, H5O_UPDATE_TIME, &fsinfo) < 0)
diff --git a/src/H5MF.c b/src/H5MF.c
index 14be37a..c100637 100644
--- a/src/H5MF.c
+++ b/src/H5MF.c
@@ -163,7 +163,7 @@ H5MF_init_merge_flags(H5F_shared_t *f_sh)
* can merge with the metadata or small 'raw' data aggregator
*/
all_same = TRUE;
- for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type))
+ for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; type++)
/* Check for any different type mappings */
if(f_sh->fs_type_map[type] != f_sh->fs_type_map[H5FD_MEM_DEFAULT]) {
all_same = FALSE;
@@ -187,7 +187,7 @@ H5MF_init_merge_flags(H5F_shared_t *f_sh)
/* One or more allocation type don't map to the same free list type */
/* Check if all the metadata allocation types map to the same type */
all_metadata_same = TRUE;
- for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type))
+ for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; type++)
/* Skip checking raw data free list mapping */
/* (global heap is treated as raw data) */
if(type != H5FD_MEM_DRAW && type != H5FD_MEM_GHEAP) {
@@ -1686,7 +1686,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC);
/* Iterate over all the free space types that have managers and
* get each free list's space
*/
- for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) {
+ for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++) {
/* Test to see if we need to switch rings -- do so if required */
if(H5MF__fsm_type_is_self_referential(f->shared, ptype))
needed_ring = H5AC_RING_MDFSM;
@@ -1708,7 +1708,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC);
/* Iterate over all the free space types that have managers and
* get each free list's space
*/
- for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) {
+ for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; type++) {
/* Test to see if we need to switch rings -- do so if required */
if(H5MF__fsm_type_is_self_referential(f->shared, (H5F_mem_page_t)type))
needed_ring = H5AC_RING_MDFSM;
@@ -1807,9 +1807,9 @@ HDfprintf(stderr, "%s: Entering\n", FUNC);
*
* In passing, verify that all the free space managers are closed.
*/
- for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype))
+ for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++)
fsinfo.fs_addr[ptype - 1] = HADDR_UNDEF;
- for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type))
+ for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; type++)
fsinfo.fs_addr[type-1] = f->shared->fs_addr[type];
fsinfo.strategy = f->shared->fs_strategy;
fsinfo.persist = f->shared->fs_persist;
@@ -1824,7 +1824,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC);
HGOTO_ERROR(H5E_RESOURCE, H5E_WRITEERROR, FAIL, "error in writing message to superblock extension")
/* Close the free space managers */
- for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) {
+ for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; type++) {
if(f->shared->fs_man[type]) {
/* Test to see if we need to switch rings -- do so if required */
if(H5MF__fsm_type_is_self_referential(f->shared, (H5F_mem_page_t)type))
@@ -1877,7 +1877,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC);
HDassert(H5F_NULL_FSM_ADDR(f) || final_eoa == f->shared->eoa_fsm_fsalloc);
} /* end if */
else { /* super_vers can be 0, 1, 2 */
- for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type))
+ for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; type++)
if(H5MF__close_delete_fstype(f, (H5F_mem_page_t)type) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't initialize file free space")
} /* end else */
@@ -1958,7 +1958,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC);
fsinfo.eoa_pre_fsm_fsalloc = HADDR_UNDEF;
fsinfo.version = f->shared->fs_version;
- for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype))
+ for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++)
fsinfo.fs_addr[ptype - 1] = HADDR_UNDEF;
if(f->shared->fs_persist) {
@@ -1980,7 +1980,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC);
* file space for the self referential free space managers. Other
* data was gathered above.
*/
- for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype))
+ for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++)
fsinfo.fs_addr[ptype-1] = f->shared->fs_addr[ptype];
fsinfo.eoa_pre_fsm_fsalloc = f->shared->eoa_fsm_fsalloc;
@@ -1990,7 +1990,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC);
/* Close the free space managers */
/* use H5MF__close_fstype() for this? */
- for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) {
+ for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++) {
if(f->shared->fs_man[ptype]) {
/* Test to see if we need to switch rings -- do so if required */
if(H5MF__fsm_type_is_self_referential(f->shared, ptype))
@@ -2052,7 +2052,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC);
/* Iterate over all the free space types that have managers
* and get each free list's space
*/
- for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype))
+ for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++)
if(H5MF__close_delete_fstype(f, ptype) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't close the free space manager")
@@ -2125,7 +2125,7 @@ H5MF__close_shrink_eoa(H5F_t *f)
if(H5F_PAGED_AGGR(f)) {
/* Check the last section of each free-space manager */
- for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) {
+ for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++) {
if(f->shared->fs_man[ptype]) {
/* Test to see if we need to switch rings -- do so if required */
if(H5MF__fsm_type_is_self_referential(f->shared, ptype))
@@ -2149,7 +2149,7 @@ H5MF__close_shrink_eoa(H5F_t *f)
} /* end if */
else {
/* Check the last section of each free-space manager */
- for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) {
+ for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; type++) {
if(f->shared->fs_man[type]) {
/* Test to see if we need to switch rings -- do so if required */
if(H5MF__fsm_type_is_self_referential(f->shared, (H5F_mem_page_t)type))
@@ -2245,7 +2245,7 @@ H5MF_get_freespace(H5F_t *f, hsize_t *tot_space, hsize_t *meta_size)
end_type = (H5F_mem_page_t)H5FD_MEM_NTYPES;
} /* end else */
- for(tt = H5FD_MEM_SUPER; tt < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, tt))
+ for(tt = H5FD_MEM_SUPER; tt < H5FD_MEM_NTYPES; tt++)
if(HADDR_UNDEF == (fs_eoa[tt] = H5F_get_eoa(f, tt)))
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "driver get_eoa request failed")
@@ -2260,7 +2260,7 @@ H5MF_get_freespace(H5F_t *f, hsize_t *tot_space, hsize_t *meta_size)
} /* end if */
/* Iterate over all the free space types that have managers and get each free list's space */
- for(type = start_type; type < end_type; H5_INC_ENUM(H5F_mem_page_t, type)) {
+ for(type = start_type; type < end_type; type++) {
fs_started[type] = FALSE;
/* Check if the free space for the file has been initialized */
@@ -2300,7 +2300,7 @@ H5MF_get_freespace(H5F_t *f, hsize_t *tot_space, hsize_t *meta_size)
} /* end for */
/* Close the free-space managers if they were opened earlier in this routine */
- for(type = start_type; type < end_type; H5_INC_ENUM(H5F_mem_page_t, type)) {
+ for(type = start_type; type < end_type; type++) {
/* Test to see if we need to switch rings -- do so if required */
if(H5MF__fsm_type_is_self_referential(f->shared, (H5F_mem_page_t)type))
needed_ring = H5AC_RING_MDFSM;
@@ -2387,7 +2387,7 @@ H5MF_get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, H5F_sect_info_t
if(H5F_PAGED_AGGR(f)) /* set to the corresponding LARGE free-space manager */
end_type = (H5F_mem_page_t)(end_type + H5FD_MEM_NTYPES);
else
- H5_INC_ENUM(H5F_mem_page_t, end_type);
+ end_type++;
} /* end else */
/* Set up user data for section iteration */
@@ -2403,7 +2403,7 @@ H5MF_get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, H5F_sect_info_t
curr_ring = H5AC_RING_RDFSM;
/* Iterate over memory types, retrieving the number of sections of each type */
- for(ty = start_type; ty < end_type; H5_INC_ENUM(H5F_mem_page_t, ty)) {
+ for(ty = start_type; ty < end_type; ty++) {
hbool_t fs_started = FALSE; /* The free-space manager is opened or not */
size_t nums = 0; /* The number of free-space sections */
@@ -2733,7 +2733,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled)
else /* no need for a second pass */
break;
- for(mem_type = H5FD_MEM_SUPER; mem_type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5F_mem_t, mem_type)) {
+ for(mem_type = H5FD_MEM_SUPER; mem_type < H5FD_MEM_NTYPES; mem_type++) {
H5MF__alloc_to_fs_type(f->shared, mem_type, alloc_size, &fsm_type);
if(pass_count == 0) { /* this is the first pass */
@@ -2834,7 +2834,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled)
* those addresses are unknown. This is OK -- we will write the correct
* values to the message at free space manager shutdown.
*/
- for(fsm_type = H5F_MEM_PAGE_SUPER; fsm_type < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, fsm_type))
+ for(fsm_type = H5F_MEM_PAGE_SUPER; fsm_type < H5F_MEM_PAGE_NTYPES; fsm_type++)
fsinfo.fs_addr[fsm_type - 1] = HADDR_UNDEF;
fsinfo.strategy = f->shared->fs_strategy;
fsinfo.persist = f->shared->fs_persist;
@@ -2867,7 +2867,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled)
*/
/* Reinitialize fsm_visited */
- for(fsm_type = H5F_MEM_PAGE_SUPER; fsm_type < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, fsm_type))
+ for(fsm_type = H5F_MEM_PAGE_SUPER; fsm_type < H5F_MEM_PAGE_NTYPES; fsm_type++)
fsm_visited[fsm_type] = FALSE;
for(pass_count = 0; pass_count <= 1; pass_count++) {
@@ -2878,7 +2878,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled)
else /* no need for a second pass */
break;
- for(mem_type = H5FD_MEM_SUPER; mem_type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5F_mem_t, mem_type)) {
+ for(mem_type = H5FD_MEM_SUPER; mem_type < H5FD_MEM_NTYPES; mem_type++) {
H5MF__alloc_to_fs_type(f->shared, mem_type, alloc_size, &fsm_type);
if(pass_count == 0) { /* this is the first pass */
@@ -2975,7 +2975,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled)
} /* end for */
/* verify that all opened FSMs were closed */
- for(fsm_type = H5F_MEM_PAGE_SUPER; fsm_type < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, fsm_type))
+ for(fsm_type = H5F_MEM_PAGE_SUPER; fsm_type < H5F_MEM_PAGE_NTYPES; fsm_type++)
HDassert(!fsm_opened[fsm_type]);
/* Indicate that the FSM was settled successfully */
diff --git a/src/H5MFdbg.c b/src/H5MFdbg.c
index e11476b..7bb77e8 100644
--- a/src/H5MFdbg.c
+++ b/src/H5MFdbg.c
@@ -169,7 +169,7 @@ H5MF_sects_debug(H5F_t *f, haddr_t fs_addr, FILE *stream, int indent, int fwidth
HDassert(indent >= 0);
HDassert(fwidth >= 0);
- for(type = H5F_MEM_PAGE_DEFAULT; type < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, type))
+ for(type = H5F_MEM_PAGE_DEFAULT; type < H5F_MEM_PAGE_NTYPES; type++)
if(H5F_addr_eq(f->shared->fs_addr[type], fs_addr)) {
if(!f->shared->fs_man[type])
if(H5MF__open_fstype(f, type) < 0)
@@ -243,7 +243,7 @@ HDfprintf(stderr, "%s: for type = H5FD_MEM_DEFAULT, eoa = %a\n", FUNC, eoa);
if(H5F_PAGED_AGGR(f)) { /* File space paging */
H5F_mem_page_t ptype; /* Memory type for iteration -- page fs */
- for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) {
+ for(ptype = H5F_MEM_PAGE_META; ptype < H5F_MEM_PAGE_NTYPES; ptype++) {
/* Print header for type */
HDfprintf(stream, "%*sFile Free Space Info for type = %u:\n", indent, "", (unsigned)ptype);
@@ -289,7 +289,7 @@ HDfprintf(stderr, "%s: sda_addr = %a, sda_size = %Hu, end of sda = %a\n", FUNC,
#endif /* H5MF_ALLOC_DEBUG */
/* Iterate over all the free space types that have managers and dump each free list's space */
- for(atype = H5FD_MEM_DEFAULT; atype < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, atype)) {
+ for(atype = H5FD_MEM_DEFAULT; atype < H5FD_MEM_NTYPES; atype++) {
/* Print header for type */
HDfprintf(stream, "%*sFile Free Space Info for type = %u:\n", indent, "", (unsigned)atype);
diff --git a/src/H5Mpublic.h b/src/H5Mpublic.h
index 9cbdb32..524ab0f 100644
--- a/src/H5Mpublic.h
+++ b/src/H5Mpublic.h
@@ -40,7 +40,8 @@
#define H5VL_MAP_PUT 5
#define H5VL_MAP_GET 6
#define H5VL_MAP_SPECIFIC 7
-#define H5VL_MAP_CLOSE 8
+#define H5VL_MAP_OPTIONAL 8
+#define H5VL_MAP_CLOSE 9
/*******************/
diff --git a/src/H5O.c b/src/H5O.c
index 7e5694a..3938413 100644
--- a/src/H5O.c
+++ b/src/H5O.c
@@ -290,11 +290,11 @@ H5Oopen_by_addr(hid_t loc_id, haddr_t addr)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid VOL object")
/* This is a native specific routine that requires serialization of the token */
- p = obj_token;
+ p = (uint8_t *)&obj_token;
H5F_addr_encode(f, &p, addr);
loc_params.type = H5VL_OBJECT_BY_TOKEN;
- loc_params.loc_data.loc_by_token.token = obj_token;
+ loc_params.loc_data.loc_by_token.token = &obj_token;
loc_params.obj_type = vol_obj_type;
/* Open the object */
diff --git a/src/H5Ocopy_ref.c b/src/H5Ocopy_ref.c
index 20b8454..b835f8e 100644
--- a/src/H5Ocopy_ref.c
+++ b/src/H5Ocopy_ref.c
@@ -185,7 +185,7 @@ H5O__copy_expand_ref_object1(H5O_loc_t *src_oloc, const void *buf_src,
/* Set up for the object copy for the reference */
if(H5R__decode_token_obj_compat(src_buf, &buf_size, &tmp_token, token_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, FAIL, "unable to decode src object address")
- p = tmp_token;
+ p = (uint8_t *)&tmp_token;
H5F_addr_decode(src_oloc->file, (const uint8_t **)&p, &src_oloc->addr);
if(!H5F_addr_defined(src_oloc->addr) || src_oloc->addr == 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "undefined reference pointer")
@@ -196,7 +196,7 @@ H5O__copy_expand_ref_object1(H5O_loc_t *src_oloc, const void *buf_src,
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to copy object")
/* Set the object reference info for the destination file */
- p = tmp_token;
+ p = (uint8_t *)&tmp_token;
H5F_addr_encode(dst_oloc->file, &p, dst_oloc->addr);
if(H5R__encode_token_obj_compat((const H5VL_token_t *)&tmp_token, token_size, dst_buf, &buf_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, FAIL, "unable to encode dst object address")
@@ -371,7 +371,7 @@ H5O__copy_expand_ref_object2(H5O_loc_t *src_oloc, hid_t tid_src, H5T_t *dt_src,
/* Get src object address */
if(H5R__get_obj_token(ref, &tmp_token, &token_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to get object token")
- p = tmp_token;
+ p = (uint8_t *)&tmp_token;
H5F_addr_decode(src_oloc->file, (const uint8_t **)&p, &src_oloc->addr);
/* Attempt to copy object from source to destination file */
@@ -379,7 +379,7 @@ H5O__copy_expand_ref_object2(H5O_loc_t *src_oloc, hid_t tid_src, H5T_t *dt_src,
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to copy object")
/* Set dst object address */
- p = tmp_token;
+ p = (uint8_t *)&tmp_token;
H5F_addr_encode(dst_oloc->file, &p, dst_oloc->addr);
if(H5R__set_obj_token(ref, (const H5VL_token_t *)&tmp_token, token_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "unable to set object token")
diff --git a/src/H5Ofsinfo.c b/src/H5Ofsinfo.c
index e5e6741..7e48b9e 100644
--- a/src/H5Ofsinfo.c
+++ b/src/H5Ofsinfo.c
@@ -112,7 +112,7 @@ H5O_fsinfo_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh,
if(NULL == (fsinfo = H5FL_CALLOC(H5O_fsinfo_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
- for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype))
+ for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; ptype++)
fsinfo->fs_addr[ptype - 1] = HADDR_UNDEF;
/* Version of message */
@@ -141,7 +141,7 @@ H5O_fsinfo_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh,
fsinfo->threshold = threshold;
if(HADDR_UNDEF == (fsinfo->eoa_pre_fsm_fsalloc = H5F_get_eoa(f, H5FD_MEM_DEFAULT)) )
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "unable to get file size")
- for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type))
+ for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; type++)
H5F_addr_decode(f, &p, &(fsinfo->fs_addr[type-1]));
break;
@@ -181,7 +181,7 @@ H5O_fsinfo_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh,
/* Decode addresses of free space managers, if persisting */
if(fsinfo->persist) {
- for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype))
+ for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; ptype++)
H5F_addr_decode(f, &p, &(fsinfo->fs_addr[ptype - 1]));
} /* end if */
@@ -235,7 +235,7 @@ H5O_fsinfo_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, c
/* Store addresses of free-space managers, if persisting */
if(fsinfo->persist) {
/* Addresses of free-space managers */
- for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype))
+ for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; ptype++)
H5F_addr_encode(f, &p, fsinfo->fs_addr[ptype - 1]);
} /* end if */
@@ -480,7 +480,7 @@ H5O__fsinfo_debug(H5F_t H5_ATTR_UNUSED *f, const void *_mesg, FILE * stream,
"eoa_pre_fsm_fsalloc:", fsinfo->eoa_pre_fsm_fsalloc);
if(fsinfo->persist) {
- for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype))
+ for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; ptype++)
HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth,
"Free space manager address:", fsinfo->fs_addr[ptype-1]);
} /* end if */
diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c
index 721ba89..b83e2cf 100644
--- a/src/H5Pdcpl.c
+++ b/src/H5Pdcpl.c
@@ -3324,19 +3324,19 @@ H5P_get_fill_value(H5P_genplist_t *plist, const H5T_t *type, void *value/*out*/)
*/
if(H5T_get_size(type) >= H5T_get_size(fill.type)) {
buf = value;
- if(H5T_path_bkg(tpath) && NULL == (bkg = H5MM_malloc(H5T_get_size(type))))
+ if(H5T_path_bkg(tpath) && NULL == (bkg = H5MM_calloc(H5T_get_size(type))))
HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "memory allocation failed for type conversion")
} /* end if */
else {
- if(NULL == (buf = H5MM_malloc(H5T_get_size(fill.type))))
+ if(NULL == (buf = H5MM_calloc(H5T_get_size(fill.type))))
HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "memory allocation failed for type conversion")
- if(H5T_path_bkg(tpath) && NULL == (bkg = H5MM_malloc(H5T_get_size(fill.type))))
+ if(H5T_path_bkg(tpath) && NULL == (bkg = H5MM_calloc(H5T_get_size(fill.type))))
HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "memory allocation failed for type conversion")
} /* end else */
H5MM_memcpy(buf, fill.buf, H5T_get_size(fill.type));
/* Do the conversion */
- if((dst_id = H5I_register(H5I_DATATYPE, H5T_copy(type, H5T_COPY_TRANSIENT), FALSE)) < 0)
+ if((dst_id = H5I_register(H5I_DATATYPE, H5T_copy(type, H5T_COPY_ALL), FALSE)) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "unable to copy/register datatype")
if(H5T_convert(tpath, src_id, dst_id, (size_t)1, (size_t)0, (size_t)0, buf, bkg) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "datatype conversion failed")
diff --git a/src/H5R.c b/src/H5R.c
index 31b2bcd..2c4c713 100644
--- a/src/H5R.c
+++ b/src/H5R.c
@@ -74,7 +74,7 @@
*-------------------------------------------------------------------------
*/
herr_t
-H5Rcreate_object(hid_t loc_id, const char *name, H5R_ref_t *ref_ptr)
+H5Rcreate_object(hid_t loc_id, const char *name, hid_t oapl_id, H5R_ref_t *ref_ptr)
{
H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */
H5I_type_t obj_type; /* Object type of loc_id */
@@ -86,13 +86,22 @@ H5Rcreate_object(hid_t loc_id, const char *name, H5R_ref_t *ref_ptr)
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
- H5TRACE3("e", "i*s*Rr", loc_id, name, ref_ptr);
+ H5TRACE4("e", "i*si*Rr", loc_id, name, oapl_id, ref_ptr);
/* Check args */
if(ref_ptr == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid reference pointer")
if(!name || !*name)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name given")
+ if(oapl_id < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list")
+
+ /* Get object access property list */
+ if(H5P_DEFAULT == oapl_id)
+ oapl_id = H5P_LINK_ACCESS_DEFAULT;
+ else
+ if(TRUE != H5P_isa_class(oapl_id, H5P_LINK_ACCESS))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "oapl_id is not a link access property list ID")
/* Get the VOL object */
if(NULL == (vol_obj = H5VL_vol_object(loc_id)))
@@ -117,10 +126,11 @@ H5Rcreate_object(hid_t loc_id, const char *name, H5R_ref_t *ref_ptr)
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_NAME;
loc_params.loc_data.loc_by_name.name = name;
+ loc_params.loc_data.loc_by_name.lapl_id = oapl_id;
loc_params.obj_type = obj_type;
/* Get the object token */
- if(H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_LOOKUP, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, obj_token) < 0)
+ if(H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_LOOKUP, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &obj_token) < 0)
HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, FAIL, "unable to retrieve object token")
/* Create the reference (do not pass filename, since file_id is attached) */
@@ -152,7 +162,7 @@ done:
*/
herr_t
H5Rcreate_region(hid_t loc_id, const char *name, hid_t space_id,
- H5R_ref_t *ref_ptr)
+ hid_t oapl_id, H5R_ref_t *ref_ptr)
{
H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */
H5I_type_t obj_type; /* Object type of loc_id */
@@ -165,7 +175,7 @@ H5Rcreate_region(hid_t loc_id, const char *name, hid_t space_id,
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
- H5TRACE4("e", "i*si*Rr", loc_id, name, space_id, ref_ptr);
+ H5TRACE5("e", "i*sii*Rr", loc_id, name, space_id, oapl_id, ref_ptr);
/* Check args */
if(ref_ptr == NULL)
@@ -176,6 +186,15 @@ H5Rcreate_region(hid_t loc_id, const char *name, hid_t space_id,
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "reference region dataspace id must be valid")
if(NULL == (space = (struct H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
+ if(oapl_id < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list")
+
+ /* Get object access property list */
+ if(H5P_DEFAULT == oapl_id)
+ oapl_id = H5P_LINK_ACCESS_DEFAULT;
+ else
+ if(TRUE != H5P_isa_class(oapl_id, H5P_LINK_ACCESS))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "oapl_id is not a link access property list ID")
/* Get the VOL object */
if(NULL == (vol_obj = H5VL_vol_object(loc_id)))
@@ -200,10 +219,11 @@ H5Rcreate_region(hid_t loc_id, const char *name, hid_t space_id,
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_NAME;
loc_params.loc_data.loc_by_name.name = name;
+ loc_params.loc_data.loc_by_name.lapl_id = oapl_id;
loc_params.obj_type = obj_type;
/* Get the object token */
- if(H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_LOOKUP, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, obj_token) < 0)
+ if(H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_LOOKUP, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &obj_token) < 0)
HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, FAIL, "unable to retrieve object token")
/* Create the reference (do not pass filename, since file_id is attached) */
@@ -234,7 +254,7 @@ done:
*/
herr_t
H5Rcreate_attr(hid_t loc_id, const char *name, const char *attr_name,
- H5R_ref_t *ref_ptr)
+ hid_t oapl_id, H5R_ref_t *ref_ptr)
{
H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */
H5I_type_t obj_type; /* Object type of loc_id */
@@ -246,7 +266,7 @@ H5Rcreate_attr(hid_t loc_id, const char *name, const char *attr_name,
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
- H5TRACE4("e", "i*s*s*Rr", loc_id, name, attr_name, ref_ptr);
+ H5TRACE5("e", "i*s*si*Rr", loc_id, name, attr_name, oapl_id, ref_ptr);
/* Check args */
if(ref_ptr == NULL)
@@ -255,6 +275,15 @@ H5Rcreate_attr(hid_t loc_id, const char *name, const char *attr_name,
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name given")
if(!attr_name || !*attr_name)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no attribute name given")
+ if(oapl_id < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list")
+
+ /* Get object access property list */
+ if(H5P_DEFAULT == oapl_id)
+ oapl_id = H5P_LINK_ACCESS_DEFAULT;
+ else
+ if(TRUE != H5P_isa_class(oapl_id, H5P_LINK_ACCESS))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "oapl_id is not a link access property list ID")
/* Get the VOL object */
if(NULL == (vol_obj = H5VL_vol_object(loc_id)))
@@ -279,10 +308,11 @@ H5Rcreate_attr(hid_t loc_id, const char *name, const char *attr_name,
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_NAME;
loc_params.loc_data.loc_by_name.name = name;
+ loc_params.loc_data.loc_by_name.lapl_id = oapl_id;
loc_params.obj_type = obj_type;
/* Get the object token */
- if(H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_LOOKUP, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, obj_token) < 0)
+ if(H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_LOOKUP, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &obj_token) < 0)
HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, FAIL, "unable to retrieve object token")
/* Create the reference (do not pass filename, since file_id is attached) */
@@ -481,7 +511,7 @@ H5Ropen_object(const H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id)
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_TOKEN;
- loc_params.loc_data.loc_by_token.token = obj_token;
+ loc_params.loc_data.loc_by_token.token = &obj_token;
loc_params.obj_type = H5I_get_type(loc_id);
/* Open object by token */
@@ -553,7 +583,7 @@ H5Ropen_region(const H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id)
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_TOKEN;
- loc_params.loc_data.loc_by_token.token = obj_token;
+ loc_params.loc_data.loc_by_token.token = &obj_token;
loc_params.obj_type = H5I_get_type(loc_id);
/* Open object by token */
@@ -645,7 +675,7 @@ H5Ropen_attr(const H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t aapl_id)
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_TOKEN;
- loc_params.loc_data.loc_by_token.token = obj_token;
+ loc_params.loc_data.loc_by_token.token = &obj_token;
loc_params.obj_type = H5I_get_type(loc_id);
/* Open object by token */
@@ -735,7 +765,7 @@ H5Rget_obj_type3(const H5R_ref_t *ref_ptr, hid_t rapl_id, H5O_type_t *obj_type)
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_TOKEN;
- loc_params.loc_data.loc_by_token.token = obj_token;
+ loc_params.loc_data.loc_by_token.token = &obj_token;
loc_params.obj_type = H5I_get_type(loc_id);
/* Retrieve object's type */
@@ -843,7 +873,7 @@ H5Rget_obj_name(const H5R_ref_t *ref_ptr, hid_t rapl_id, char *buf, size_t size)
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_TOKEN;
- loc_params.loc_data.loc_by_token.token = obj_token;
+ loc_params.loc_data.loc_by_token.token = &obj_token;
loc_params.obj_type = H5I_get_type(loc_id);
/* Retrieve object's name */
diff --git a/src/H5Rdeprec.c b/src/H5Rdeprec.c
index 0636da9..ad3c219 100644
--- a/src/H5Rdeprec.c
+++ b/src/H5Rdeprec.c
@@ -128,7 +128,7 @@ H5Rget_obj_type1(hid_t id, H5R_type_t ref_type, const void *ref)
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_TOKEN;
- loc_params.loc_data.loc_by_token.token = obj_token;
+ loc_params.loc_data.loc_by_token.token = &obj_token;
loc_params.obj_type = vol_obj_type;
/* Retrieve object's type */
@@ -188,7 +188,7 @@ H5Rdereference1(hid_t obj_id, H5R_type_t ref_type, const void *ref)
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_TOKEN;
- loc_params.loc_data.loc_by_token.token = obj_token;
+ loc_params.loc_data.loc_by_token.token = &obj_token;
loc_params.obj_type = vol_obj_type;
/* Dereference */
@@ -258,10 +258,11 @@ H5Rcreate(void *ref, hid_t loc_id, const char *name, H5R_type_t ref_type,
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_NAME;
loc_params.loc_data.loc_by_name.name = name;
+ loc_params.loc_data.loc_by_name.lapl_id = H5P_LINK_ACCESS_DEFAULT;
loc_params.obj_type = vol_obj_type;
/* Get the object token */
- if(H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_LOOKUP, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, obj_token) < 0)
+ if(H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_LOOKUP, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &obj_token) < 0)
HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, FAIL, "unable to retrieve object token")
/* Get the file for the object */
@@ -356,7 +357,7 @@ H5Rget_obj_type2(hid_t id, H5R_type_t ref_type, const void *ref,
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_TOKEN;
- loc_params.loc_data.loc_by_token.token = obj_token;
+ loc_params.loc_data.loc_by_token.token = &obj_token;
loc_params.obj_type = vol_obj_type;
/* Retrieve object's type */
@@ -420,7 +421,7 @@ H5Rdereference2(hid_t obj_id, hid_t oapl_id, H5R_type_t ref_type,
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_TOKEN;
- loc_params.loc_data.loc_by_token.token = obj_token;
+ loc_params.loc_data.loc_by_token.token = &obj_token;
loc_params.obj_type = vol_obj_type;
/* Open object by token */
@@ -553,7 +554,7 @@ H5Rget_name(hid_t id, H5R_type_t ref_type, const void *ref, char *name,
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_TOKEN;
- loc_params.loc_data.loc_by_token.token = obj_token;
+ loc_params.loc_data.loc_by_token.token = &obj_token;
loc_params.obj_type = vol_obj_type;
/* Retrieve object's name */
diff --git a/src/H5Rint.c b/src/H5Rint.c
index 558c095..9879865 100644
--- a/src/H5Rint.c
+++ b/src/H5Rint.c
@@ -258,7 +258,7 @@ H5R__create_object(const H5VL_token_t *obj_token, size_t token_size,
HDassert(ref);
/* Create new reference */
- H5MM_memcpy(ref->ref.obj.token, obj_token, token_size);
+ H5MM_memcpy(&ref->ref.obj.token, obj_token, token_size);
ref->ref.obj.filename = NULL;
ref->loc_id = H5I_INVALID_HID;
ref->type = (uint8_t)H5R_OBJECT2;
@@ -300,7 +300,7 @@ H5R__create_region(const H5VL_token_t *obj_token, size_t token_size,
HDassert(ref);
/* Create new reference */
- H5MM_memcpy(ref->ref.obj.token, obj_token, token_size);
+ H5MM_memcpy(&ref->ref.obj.token, obj_token, token_size);
ref->ref.obj.filename = NULL;
if(NULL == (ref->ref.reg.space = H5S_copy(space, FALSE, TRUE)))
HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "unable to copy dataspace")
@@ -355,7 +355,7 @@ H5R__create_attr(const H5VL_token_t *obj_token, size_t token_size,
HGOTO_ERROR(H5E_REFERENCE, H5E_ARGS, FAIL, "attribute name too long (%d > %d)", (int)HDstrlen(attr_name), H5R_MAX_STRING_LEN)
/* Create new reference */
- H5MM_memcpy(ref->ref.obj.token, obj_token, token_size);
+ H5MM_memcpy(&ref->ref.obj.token, obj_token, token_size);
ref->ref.obj.filename = NULL;
if(NULL == (ref->ref.attr.name = HDstrdup(attr_name)))
HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "Cannot copy attribute name")
@@ -602,7 +602,7 @@ H5R__equal(const H5R_ref_priv_t *ref1, const H5R_ref_priv_t *ref2)
/* Compare object addresses */
if(ref1->token_size != ref2->token_size)
HGOTO_DONE(FALSE);
- if(0 != HDmemcmp(ref1->ref.obj.token, ref2->ref.obj.token, ref1->token_size))
+ if(0 != HDmemcmp(&ref1->ref.obj.token, &ref2->ref.obj.token, ref1->token_size))
HGOTO_DONE(FALSE);
/* Compare filenames */
@@ -659,7 +659,7 @@ H5R__copy(const H5R_ref_priv_t *src_ref, H5R_ref_priv_t *dst_ref)
HDassert((src_ref != NULL) && (dst_ref != NULL));
- H5MM_memcpy(dst_ref->ref.obj.token, src_ref->ref.obj.token, src_ref->token_size);
+ H5MM_memcpy(&dst_ref->ref.obj.token, &src_ref->ref.obj.token, src_ref->token_size);
dst_ref->encode_size = src_ref->encode_size;
dst_ref->type = src_ref->type;
dst_ref->token_size = src_ref->token_size;
@@ -729,7 +729,7 @@ H5R__get_obj_token(const H5R_ref_priv_t *ref, H5VL_token_t *obj_token,
if(obj_token) {
if(0 == ref->token_size)
HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "NULL token size")
- H5MM_memcpy(obj_token, ref->ref.obj.token, ref->token_size);
+ H5MM_memcpy(obj_token, &ref->ref.obj.token, ref->token_size);
}
if(token_size)
*token_size = ref->token_size;
@@ -761,7 +761,7 @@ H5R__set_obj_token(H5R_ref_priv_t *ref, const H5VL_token_t *obj_token,
HDassert(token_size);
HDassert(token_size <= H5VL_MAX_TOKEN_SIZE);
- H5MM_memcpy(ref->ref.obj.token, obj_token, ref->token_size);
+ H5MM_memcpy(&ref->ref.obj.token, obj_token, ref->token_size);
ref->token_size = token_size;
FUNC_LEAVE_NOAPI(ret_value)
@@ -1702,13 +1702,13 @@ H5R__decode_token_region_compat(H5F_t *f, const unsigned char *buf,
/* Get object address */
p = (const uint8_t *)data;
- H5MM_memcpy(token, p, token_size);
+ H5MM_memcpy(&token, p, token_size);
p += token_size;
if(space_ptr) {
H5O_loc_t oloc; /* Object location */
H5S_t *space = NULL;
- const uint8_t *q = token;
+ const uint8_t *q = (const uint8_t *)&token;
/* Initialize the object location */
H5O_loc_reset(&oloc);
@@ -1726,7 +1726,7 @@ H5R__decode_token_region_compat(H5F_t *f, const unsigned char *buf,
*space_ptr = space;
}
if(obj_token)
- H5MM_memcpy(obj_token, token, token_size);
+ H5MM_memcpy(obj_token, &token, token_size);
done:
H5MM_free(data);
diff --git a/src/H5Rpublic.h b/src/H5Rpublic.h
index ce54ac4..a13d54b 100644
--- a/src/H5Rpublic.h
+++ b/src/H5Rpublic.h
@@ -70,14 +70,18 @@ typedef haddr_t hobj_ref_t;
* machine (8 bytes currently) plus an int.
* Note! This type can only be used with the "native" HDF5 VOL connector.
*/
-typedef unsigned char hdset_reg_ref_t[H5R_DSET_REG_REF_BUF_SIZE];
+typedef struct {
+ char __data[H5R_DSET_REG_REF_BUF_SIZE];
+} hdset_reg_ref_t;
/**
* Opaque reference type. The same reference type is used for object,
* dataset region and attribute references. This is the type that
* should always be used with the current reference API.
*/
-typedef unsigned char H5R_ref_t[H5R_REF_BUF_SIZE];
+typedef struct {
+ char __data[H5R_REF_BUF_SIZE];
+} H5R_ref_t;
/********************/
/* Public Variables */
@@ -93,9 +97,9 @@ extern "C" {
#endif
/* Constructors */
-H5_DLL herr_t H5Rcreate_object(hid_t loc_id, const char *name, H5R_ref_t *ref_ptr);
-H5_DLL herr_t H5Rcreate_region(hid_t loc_id, const char *name, hid_t space_id, H5R_ref_t *ref_ptr);
-H5_DLL herr_t H5Rcreate_attr(hid_t loc_id, const char *name, const char *attr_name, H5R_ref_t *ref_ptr);
+H5_DLL herr_t H5Rcreate_object(hid_t loc_id, const char *name, hid_t oapl_id, H5R_ref_t *ref_ptr);
+H5_DLL herr_t H5Rcreate_region(hid_t loc_id, const char *name, hid_t space_id, hid_t oapl_id, H5R_ref_t *ref_ptr);
+H5_DLL herr_t H5Rcreate_attr(hid_t loc_id, const char *name, const char *attr_name, hid_t oapl_id, H5R_ref_t *ref_ptr);
H5_DLL herr_t H5Rdestroy(H5R_ref_t *ref_ptr);
/* Info */
diff --git a/src/H5Shyper.c b/src/H5Shyper.c
index ab06eff..1e1538e 100644
--- a/src/H5Shyper.c
+++ b/src/H5Shyper.c
@@ -4265,6 +4265,9 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p)
/* Decode version */
UINT32DECODE(pp, version);
+ if(version < H5S_HYPER_VERSION_1 || version > H5S_HYPER_VERSION_LATEST)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "bad version number for hyperslab selection")
+
if(version >= (uint32_t)H5S_HYPER_VERSION_2) {
/* Decode flags */
flags = *(pp)++;
@@ -11503,7 +11506,7 @@ H5S__hyper_project_intersection(const H5S_t *src_space, const H5S_t *dst_space,
HDassert(src_intersect_space);
HDassert(proj_space);
- /* Assert that src_space and src_intersect_space have same extent and there
+ /* Assert that src_space and src_intersect_space have same rank and there
* are no point selections */
HDassert(H5S_GET_EXTENT_NDIMS(src_space) == H5S_GET_EXTENT_NDIMS(src_intersect_space));
HDassert(H5S_GET_SELECT_NPOINTS(src_space) == H5S_GET_SELECT_NPOINTS(dst_space));
diff --git a/src/H5Spkg.h b/src/H5Spkg.h
index ba60cbf..e139bce 100644
--- a/src/H5Spkg.h
+++ b/src/H5Spkg.h
@@ -41,9 +41,10 @@
#define H5S_SELECT_FLAG_BITS (H5S_HYPER_REGULAR)
/* Versions for H5S_SEL_HYPER selection info */
-#define H5S_HYPER_VERSION_1 1
-#define H5S_HYPER_VERSION_2 2
-#define H5S_HYPER_VERSION_3 3
+#define H5S_HYPER_VERSION_1 1
+#define H5S_HYPER_VERSION_2 2
+#define H5S_HYPER_VERSION_3 3
+#define H5S_HYPER_VERSION_LATEST H5S_HYPER_VERSION_3
/* Versions for H5S_SEL_POINTS selection info */
#define H5S_POINT_VERSION_1 1
diff --git a/src/H5Sselect.c b/src/H5Sselect.c
index 664f4b5..6c8b898 100644
--- a/src/H5Sselect.c
+++ b/src/H5Sselect.c
@@ -2615,6 +2615,7 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space,
HDassert(src_intersect_space);
HDassert(new_space_ptr);
HDassert(H5S_GET_SELECT_NPOINTS(src_space) == H5S_GET_SELECT_NPOINTS(dst_space));
+ HDassert(H5S_GET_EXTENT_NDIMS(src_space) == H5S_GET_EXTENT_NDIMS(src_intersect_space));
/* Create new space, using dst extent. Start with "all" selection. */
if(NULL == (new_space = H5S_create(H5S_SIMPLE)))
@@ -2639,97 +2640,134 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space,
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection")
} /* end if */
else {
- /* If the source intersect space is a point selection, convert it to a
- * hyperslab (discarding ordering). We can get away with this because
- * the order does not matter for the source intersect space */
- /* Maybe we should just leave it as a point selection for the point by
- * point algorithm? The search through the selection in
- * H5S_SELECT_INTERSECT_BLOCK will likely be O(N) either way. -NAF */
- if(H5S_GET_SELECT_TYPE(src_intersect_space) == H5S_SEL_POINTS) {
- H5S_pnt_node_t *curr_pnt = src_intersect_space->select.sel_info.pnt_lst->head;
-
- /* Create dataspace and copy extent */
- if(NULL == (tmp_src_intersect_space = H5S_create(H5S_SIMPLE)))
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "unable to create temporary source intersect dataspace")
- if(H5S__extent_copy_real(&tmp_src_intersect_space->extent, &src_intersect_space->extent, FALSE) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "unable to copy source intersect space extent")
-
- /* Iterate over points */
- for(curr_pnt = src_intersect_space->select.sel_info.pnt_lst->head; curr_pnt; curr_pnt = curr_pnt->next)
- /* Add point to hyperslab selection */
- if(H5S_hyper_add_span_element(tmp_src_intersect_space, src_intersect_space->extent.rank, curr_pnt->pnt) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "can't add point to temporary dataspace selection")
-
- /* Redirect local src_intersect_space pointer (will not affect
- * calling function) */
- src_intersect_space = tmp_src_intersect_space;
- } /* end for */
-
- /* By this point, src_intersect_space must be a hyperslab selection */
- HDassert(H5S_GET_SELECT_TYPE(src_intersect_space) == H5S_SEL_HYPERSLABS);
-
- /* If either the source space or the destination space is a point
- * selection, iterate element by element */
- if((H5S_GET_SELECT_TYPE(src_space) == H5S_SEL_POINTS)
- || (H5S_GET_SELECT_TYPE(dst_space) == H5S_SEL_POINTS)) {
- hsize_t coords[H5S_MAX_RANK];
+ /* Handle scalar dataspaces. It should not be possible for the source
+ * intersect space or the source space to be scalar since scalar spaces
+ * only support all or none selections, and both of those cases are
+ * covered above, and the source intersect space must have the same
+ * rank, so it also cannot be scalar, as scalar dataspaces have a rank
+ * of 0. */
+ HDassert(H5S_GET_EXTENT_TYPE(src_space) != H5S_SCALAR);
+ HDassert(H5S_GET_EXTENT_TYPE(src_intersect_space) != H5S_SCALAR);
+
+ /* Check for scalar dst_space. In this case we simply check if the
+ * (single) point selected in src_space intersects src_intersect_space,
+ * if so select all in new_space, otherwise select none. */
+ if(H5S_GET_EXTENT_TYPE(dst_space) == H5S_SCALAR) {
+ hsize_t coords_start[H5S_MAX_RANK];
+ hsize_t coords_end[H5S_MAX_RANK];
htri_t intersect;
- /* Start with "none" selection */
- if(H5S_select_none(new_space) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection")
+ /* Get source space bounds. Should be a single point. */
+ if(H5S_SELECT_BOUNDS(src_space, coords_start, coords_end) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get source space bounds")
+ HDassert(0 == HDmemcmp(coords_start, coords_end, H5S_GET_EXTENT_NDIMS(src_space) * sizeof(coords_start[0])));
- /* Initialize iterators */
- if(H5S_select_iter_init(&ss_iter, src_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't initialize source space selection iterator")
- ss_iter_init = TRUE;
- if(H5S_select_iter_init(&ds_iter, dst_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't initialize destination space selection iterator")
- ds_iter_init = TRUE;
-
- /* Iterate over points */
- do {
- HDassert(ss_iter.elmt_left > 0);
- HDassert(ss_iter.elmt_left > 0);
-
- /* Get SS coords */
- if(H5S_SELECT_ITER_COORDS(&ss_iter, coords) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get source selection coordinates")
-
- /* Check for intersection */
- if((intersect = H5S_SELECT_INTERSECT_BLOCK(src_intersect_space, coords, coords)) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "can't check for intersection")
-
- /* Add point if it intersects */
- if(intersect) {
- /* Get DS coords */
- if(H5S_SELECT_ITER_COORDS(&ds_iter, coords) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get destination selection coordinates")
-
- /* Add point to new_space */
- if(H5S_select_elements(new_space, H5S_SELECT_APPEND, 1, coords) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "can't add point to new selection")
- } /* end if */
+ /* Check for intersection */
+ if((intersect = H5S_SELECT_INTERSECT_BLOCK(src_intersect_space, coords_start, coords_end)) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "can't check for intersection")
- /* Advance iterators */
- if(H5S_SELECT_ITER_NEXT(&ss_iter, 1) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "can't advacne source selection iterator")
- ss_iter.elmt_left--;
- if(H5S_SELECT_ITER_NEXT(&ds_iter, 1) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "can't advacne destination selection iterator")
- ds_iter.elmt_left--;
- } while(ss_iter.elmt_left > 0);
- HDassert(H5S_SELECT_ITER_NELMTS(&ds_iter) == 0);
+ /* Select all or none as appropriate */
+ if(intersect) {
+ if(H5S_select_all(new_space, TRUE) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, FAIL, "can't select all")
+ } /* end if */
+ else
+ if(H5S_select_none(new_space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection")
} /* end if */
else {
- HDassert(H5S_GET_SELECT_TYPE(src_space) != H5S_SEL_NONE);
- HDassert(H5S_GET_SELECT_TYPE(dst_space) != H5S_SEL_NONE);
-
- /* Source and destination selections are all or hyperslab,
- * intersecting selection is hyperslab. Call the hyperslab routine
- * to project to another hyperslab selection. */
- if(H5S__hyper_project_intersection(src_space, dst_space, src_intersect_space, new_space, share_selection) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "can't project hyperslab onto destination selection")
+ /* If the source intersect space is a point selection, convert it to a
+ * hyperslab (discarding ordering). We can get away with this because
+ * the order does not matter for the source intersect space */
+ /* Maybe we should just leave it as a point selection for the point by
+ * point algorithm? The search through the selection in
+ * H5S_SELECT_INTERSECT_BLOCK will likely be O(N) either way. -NAF */
+ if(H5S_GET_SELECT_TYPE(src_intersect_space) == H5S_SEL_POINTS) {
+ H5S_pnt_node_t *curr_pnt = src_intersect_space->select.sel_info.pnt_lst->head;
+
+ /* Create dataspace and copy extent */
+ if(NULL == (tmp_src_intersect_space = H5S_create(H5S_SIMPLE)))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "unable to create temporary source intersect dataspace")
+ if(H5S__extent_copy_real(&tmp_src_intersect_space->extent, &src_intersect_space->extent, FALSE) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "unable to copy source intersect space extent")
+
+ /* Iterate over points */
+ for(curr_pnt = src_intersect_space->select.sel_info.pnt_lst->head; curr_pnt; curr_pnt = curr_pnt->next)
+ /* Add point to hyperslab selection */
+ if(H5S_hyper_add_span_element(tmp_src_intersect_space, src_intersect_space->extent.rank, curr_pnt->pnt) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "can't add point to temporary dataspace selection")
+
+ /* Redirect local src_intersect_space pointer (will not affect
+ * calling function) */
+ src_intersect_space = tmp_src_intersect_space;
+ } /* end for */
+
+ /* By this point, src_intersect_space must be a hyperslab selection */
+ HDassert(H5S_GET_SELECT_TYPE(src_intersect_space) == H5S_SEL_HYPERSLABS);
+
+ /* If either the source space or the destination space is a point
+ * selection, iterate element by element */
+ if((H5S_GET_SELECT_TYPE(src_space) == H5S_SEL_POINTS)
+ || (H5S_GET_SELECT_TYPE(dst_space) == H5S_SEL_POINTS)) {
+ hsize_t coords[H5S_MAX_RANK];
+ htri_t intersect;
+
+ /* Start with "none" selection */
+ if(H5S_select_none(new_space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection")
+
+ /* Initialize iterators */
+ if(H5S_select_iter_init(&ss_iter, src_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't initialize source space selection iterator")
+ ss_iter_init = TRUE;
+ if(H5S_select_iter_init(&ds_iter, dst_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't initialize destination space selection iterator")
+ ds_iter_init = TRUE;
+
+ /* Iterate over points */
+ do {
+ HDassert(ss_iter.elmt_left > 0);
+ HDassert(ss_iter.elmt_left > 0);
+
+ /* Get SS coords */
+ if(H5S_SELECT_ITER_COORDS(&ss_iter, coords) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get source selection coordinates")
+
+ /* Check for intersection */
+ if((intersect = H5S_SELECT_INTERSECT_BLOCK(src_intersect_space, coords, coords)) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "can't check for intersection")
+
+ /* Add point if it intersects */
+ if(intersect) {
+ /* Get DS coords */
+ if(H5S_SELECT_ITER_COORDS(&ds_iter, coords) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get destination selection coordinates")
+
+ /* Add point to new_space */
+ if(H5S_select_elements(new_space, H5S_SELECT_APPEND, 1, coords) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "can't add point to new selection")
+ } /* end if */
+
+ /* Advance iterators */
+ if(H5S_SELECT_ITER_NEXT(&ss_iter, 1) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "can't advacne source selection iterator")
+ ss_iter.elmt_left--;
+ if(H5S_SELECT_ITER_NEXT(&ds_iter, 1) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "can't advacne destination selection iterator")
+ ds_iter.elmt_left--;
+ } while(ss_iter.elmt_left > 0);
+ HDassert(H5S_SELECT_ITER_NELMTS(&ds_iter) == 0);
+ } /* end if */
+ else {
+ HDassert(H5S_GET_SELECT_TYPE(src_space) != H5S_SEL_NONE);
+ HDassert(H5S_GET_SELECT_TYPE(dst_space) != H5S_SEL_NONE);
+
+ /* Source and destination selections are all or hyperslab,
+ * intersecting selection is hyperslab. Call the hyperslab routine
+ * to project to another hyperslab selection. */
+ if(H5S__hyper_project_intersection(src_space, dst_space, src_intersect_space, new_space, share_selection) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "can't project hyperslab onto destination selection")
+ } /* end else */
} /* end else */
} /* end else */
@@ -2804,10 +2842,15 @@ H5Sselect_project_intersection(hid_t src_space_id, hid_t dst_space_id,
if(NULL == (src_intersect_space = (H5S_t *)H5I_object_verify(src_intersect_space_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "not a dataspace")
- /* Check numbbers of points selected matches in source and destination */
+ /* Check numbers of points selected matches in source and destination */
if(H5S_GET_SELECT_NPOINTS(src_space) != H5S_GET_SELECT_NPOINTS(dst_space))
HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "number of points selected in source space does not match that in destination space")
+ /* Check numbers of dimensions matches in source and source intersect spaces
+ */
+ if(H5S_GET_EXTENT_NDIMS(src_space) != H5S_GET_EXTENT_NDIMS(src_intersect_space))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "rank of source space does not match rank of source intersect space")
+
/* Perform operation */
if(H5S_select_project_intersection(src_space, dst_space,
src_intersect_space, &proj_space, FALSE) < 0)
diff --git a/src/H5T.c b/src/H5T.c
index 9263158..f378357 100644
--- a/src/H5T.c
+++ b/src/H5T.c
@@ -254,6 +254,7 @@
dt->shared->u.atomic.u.r.rtype = H5R_OBJECT2; \
dt->shared->u.atomic.u.r.opaque = TRUE; \
dt->shared->u.atomic.u.r.version = H5R_ENCODE_VERSION; \
+ dt->shared->version = H5O_DTYPE_VERSION_4; \
}
/* Define the code templates for the "SIZE_TMPL" in the H5T_INIT_TYPE macro */
diff --git a/src/H5VLconnector.h b/src/H5VLconnector.h
index f0925bf..373eb44 100644
--- a/src/H5VLconnector.h
+++ b/src/H5VLconnector.h
@@ -52,7 +52,9 @@
/* type for tokens. Token are unique and permanent identifiers that are
* used to reference HDF5 objects. */
-typedef unsigned char H5VL_token_t[H5VL_MAX_TOKEN_SIZE];
+typedef struct {
+ char __data[H5VL_MAX_TOKEN_SIZE];
+} H5VL_token_t;
/* types for attribute GET callback */
typedef enum H5VL_attr_get_t {
@@ -213,7 +215,7 @@ typedef struct H5VL_loc_by_idx {
} H5VL_loc_by_idx_t;
typedef struct H5VL_loc_by_token {
- void *token;
+ H5VL_token_t *token;
} H5VL_loc_by_token_t;
/* Structure to hold parameters for object locations.
diff --git a/src/H5VLnative_object.c b/src/H5VLnative_object.c
index dfa4eab..6a22b05 100644
--- a/src/H5VLnative_object.c
+++ b/src/H5VLnative_object.c
@@ -287,7 +287,7 @@ H5VL__native_object_specific(void *obj, const H5VL_loc_params_t *loc_params, H5V
/* Lookup object */
case H5VL_OBJECT_LOOKUP:
{
- void *token = va_arg(arguments, void *);
+ H5VL_token_t *token = va_arg(arguments, H5VL_token_t *);
HDassert(token);
diff --git a/src/H5private.h b/src/H5private.h
index 2b35bd4..c39c946 100644
--- a/src/H5private.h
+++ b/src/H5private.h
@@ -521,13 +521,6 @@
# define H5_POSIX_CREATE_MODE_RW 0666
#endif
-/*
- * A macro to portably increment enumerated types.
- */
-#ifndef H5_INC_ENUM
-# define H5_INC_ENUM(TYPE,VAR) (VAR)=((TYPE)((VAR)+1))
-#endif
-
/* Represents an empty asynchronous request handle.
* Used in the VOL code.
*/
diff --git a/src/hdf5-lin.lnt b/src/hdf5-lin.lnt
index da20937..23ceed2 100644
--- a/src/hdf5-lin.lnt
+++ b/src/hdf5-lin.lnt
@@ -13,9 +13,6 @@
// Turn off warnings about not using the return value from these functions:
-emacro(534,HDfflush,HDgetrusage,HDgettimeofday,HDputc)
-// Turn off warnings about converting an enum to an int
--emacro(641,H5_INC_ENUM,H5_DEC_ENUM)
-
// Suppress message about "Expression with side effects passed to repeated parameter 1 in macro 'assert'"
-esym(666,assert)
diff --git a/src/hdf5.lnt b/src/hdf5.lnt
index 642698a..995e3f6 100644
--- a/src/hdf5.lnt
+++ b/src/hdf5.lnt
@@ -30,11 +30,6 @@
-esym(534, H5UC_decr)
-esym(534, H5VM_array_fill)
-
-// Turn off warnings about "Expression-like macro not parenthesized" for
-// enumerated type increment & decrement macros:
--esym(773, H5_INC_ENUM, H5_DEC_ENUM)
-
/* So far, the following files have been linted with these options:
H5.c
H5A.c
@@ -60,7 +55,7 @@
H5FO.c
H5Tcommit.c
- H5Tcompound.c
+ H5Tcompound.c
H5Tcset.c
H5Tenum.c