diff options
| author | Jordan Henderson <jhenderson@hdfgroup.org> | 2020-08-05 01:43:37 (GMT) |
|---|---|---|
| committer | Jordan Henderson <jhenderson@hdfgroup.org> | 2020-08-05 01:43:37 (GMT) |
| commit | 7c3d4402d730789173e413b48951fede5f6932f3 (patch) | |
| tree | c3799dcb10c8eda9e577ffb3e961781b7c9a1bc0 /src | |
| parent | ee6f7d1c96f2def94b96ebb5fdb34d592a80c8ad (diff) | |
| parent | f59bb712dec221a076728b6c582818bcf814d71a (diff) | |
| download | hdf5-7c3d4402d730789173e413b48951fede5f6932f3.zip hdf5-7c3d4402d730789173e413b48951fede5f6932f3.tar.gz hdf5-7c3d4402d730789173e413b48951fede5f6932f3.tar.bz2 | |
Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'f59bb712dec221a076728b6c582818bcf814d71a': (55 commits)
Fixes indenting in tools test scripts
Minor normalizations with 1.12 branch
Fixed bad parens in H5trace.c
Minor normalizations with hdf5_1_10
Mingw copy disabled
Warnings reduction in tools
Correct reference file
Correct h5diff filenames
Fixed typos in error messages.
Updated the Java tests to deal with H5Sset_extent_none changes
Fixed additional typos in tselect.c comments.
Fixes typo in tselect.c
Updates H5Sset_extent_none() to set H5S_NULL
Only one line needed to compare
Revert err file
Minor normalization with 1.10 branch
Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)
revert error-stack enable
Minor normalization with 1.10.
Add release notes for tools
...
Diffstat (limited to 'src')
76 files changed, 2773 insertions, 2402 deletions
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt index c0915c8..39a9e3e 100644 --- a/src/CMakeLists.txt +++ b/src/CMakeLists.txt @@ -1139,7 +1139,7 @@ if (NOT ONLY_SHARED_LIBS) add_library (${HDF5_LIB_TARGET} STATIC ${common_SRCS} ${gen_SRCS} ${H5_PUBLIC_HEADERS} ${H5_PRIVATE_HEADERS} ${H5_GENERATED_HEADERS}) target_include_directories (${HDF5_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" - INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" + INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>;$<BUILD_INTERFACE:${HDF5_BINARY_DIR}>" ) target_compile_options(${HDF5_LIB_TARGET} PRIVATE "${HDF5_CMAKE_C_FLAGS}") target_compile_definitions(${HDF5_LIB_TARGET} @@ -1176,7 +1176,7 @@ if (BUILD_SHARED_LIBS) target_include_directories (${HDF5_LIBSH_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" PUBLIC "$<$<BOOL:${HDF5_ENABLE_HDFS}>:${HDFS_INCLUDE_DIR}>" - INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" + INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>;$<BUILD_INTERFACE:${HDF5_BINARY_DIR}>" ) target_compile_options(${HDF5_LIBSH_TARGET} PRIVATE "${HDF5_CMAKE_C_FLAGS}") target_compile_definitions(${HDF5_LIBSH_TARGET} @@ -138,7 +138,7 @@ static const H5AC_class_t *const H5AC_class_s[] = { /*------------------------------------------------------------------------- * Function: H5AC_init * - * Purpose: Initialize the interface from some other layer. + * Purpose: Initialize the interface from some other layer. * * Return: Success: non-negative * Failure: negative diff --git a/src/H5Adense.c b/src/H5Adense.c index a73fcc6..fd92e8f 100644 --- a/src/H5Adense.c +++ b/src/H5Adense.c @@ -171,7 +171,6 @@ typedef struct H5A_bt2_ud_rmbi_t { * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Dec 4 2006 * *------------------------------------------------------------------------- @@ -290,9 +289,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Dec 11 2006 + * Programmer: Quincey Koziol + * Dec 11 2006 * *------------------------------------------------------------------------- */ @@ -351,9 +349,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Dec 11 2006 + * Programmer: Quincey Koziol + * Dec 11 2006 * *------------------------------------------------------------------------- */ @@ -440,9 +437,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Dec 4 2006 + * Programmer: Quincey Koziol + * Dec 4 2006 * *------------------------------------------------------------------------- */ @@ -598,7 +594,7 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, February 20, 2007 * *------------------------------------------------------------------------- @@ -632,7 +628,7 @@ H5A__dense_write_bt2_cb2(void *_record, void *_op_data, hbool_t *changed) * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, December 5, 2006 * *------------------------------------------------------------------------- @@ -743,9 +739,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Dec 4 2006 + * Programmer: Quincey Koziol + * Dec 4 2006 * *------------------------------------------------------------------------- */ @@ -840,9 +835,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Dec 5 2006 + * Programmer: Quincey Koziol + * Dec 5 2006 * *------------------------------------------------------------------------- */ @@ -883,9 +877,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Jan 3 2007 + * Programmer: Quincey Koziol + * Jan 3 2007 * *------------------------------------------------------------------------- */ @@ -1065,9 +1058,8 @@ done: * * Return: H5_ITER_ERROR/H5_ITER_CONT/H5_ITER_STOP * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Dec 5 2006 + * Programmer: Quincey Koziol + * Dec 5 2006 * *------------------------------------------------------------------------- */ @@ -1161,9 +1153,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Dec 5 2006 + * Programmer: Quincey Koziol + * Dec 5 2006 * *------------------------------------------------------------------------- */ @@ -1296,9 +1287,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Dec 11 2006 + * Programmer: Quincey Koziol + * Dec 11 2006 * *------------------------------------------------------------------------- */ @@ -1360,9 +1350,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Dec 11 2006 + * Programmer: Quincey Koziol + * Dec 11 2006 * *------------------------------------------------------------------------- */ @@ -1448,9 +1437,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Feb 14 2007 + * Programmer: Quincey Koziol + * Feb 14 2007 * *------------------------------------------------------------------------- */ @@ -1574,9 +1562,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Feb 14 2007 + * Programmer: Quincey Koziol + * Feb 14 2007 * *------------------------------------------------------------------------- */ @@ -1702,9 +1689,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Dec 11 2006 + * Programmer: Quincey Koziol + * Dec 11 2006 * *------------------------------------------------------------------------- */ @@ -1788,9 +1774,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Jan 3 2007 + * Programmer: Quincey Koziol + * Jan 3 2007 * *------------------------------------------------------------------------- */ @@ -1852,9 +1837,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Dec 6 2006 + * Programmer: Quincey Koziol + * Dec 6 2006 * *------------------------------------------------------------------------- */ diff --git a/src/H5Aint.c b/src/H5Aint.c index 1a74abe..d6ea1f4 100644 --- a/src/H5Aint.c +++ b/src/H5Aint.c @@ -122,10 +122,10 @@ const unsigned H5O_attr_ver_bounds[] = { /* Local Variables */ /*******************/ -typedef H5A_t* H5A_t_ptr; +typedef H5A_t* H5A_t_ptr; H5FL_SEQ_DEFINE(H5A_t_ptr); - + /*------------------------------------------------------------------------- * Function: H5A__create * @@ -288,16 +288,16 @@ done: FUNC_LEAVE_NOAPI_TAG(ret_value) } /* H5A__create() */ - + /*------------------------------------------------------------------------- * Function: H5A__create_by_name * - * Purpose: Create an attribute on object, according to it's name + * Purpose: Create an attribute on object, according to it's name * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * December 6, 2017 + * Programmer: Quincey Koziol + * December 6, 2017 * *------------------------------------------------------------------------- */ @@ -306,8 +306,8 @@ H5A__create_by_name(const H5G_loc_t *loc, const char *obj_name, const char *attr const H5T_t *type, const H5S_t *space, hid_t acpl_id) { H5G_loc_t obj_loc; /* Location used to open group */ - H5G_name_t obj_path; /* Opened object group hier. path */ - H5O_loc_t obj_oloc; /* Opened object object location */ + H5G_name_t obj_path; /* Opened object group hier. path */ + H5O_loc_t obj_oloc; /* Opened object object location */ hbool_t loc_found = FALSE; /* Entry at 'obj_name' found */ H5A_t *attr = NULL; /* Attribute from object header */ H5A_t *ret_value = NULL; /* Return value */ @@ -349,22 +349,21 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5A__create_by_name() */ - + /*------------------------------------------------------------------------- * Function: H5A__open_common * - * Purpose: - * Finishes initializing an attributes the open + * Purpose: Finishes initializing an attributes the open * * Usage: * herr_t H5A__open_common(loc, name) * const H5G_loc_t *loc; IN: Pointer to group location for object * H5A_t *attr; IN/OUT: Pointer to attribute to initialize * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * December 18, 2006 + * Programmer: Quincey Koziol + * December 18, 2006 * *------------------------------------------------------------------------- */ @@ -406,7 +405,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5A__open_common() */ - + /*------------------------------------------------------------------------- * Function: H5A__open * @@ -451,13 +450,13 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5A__open() */ - + /*------------------------------------------------------------------------- * Function: H5A__open_by_idx * * Purpose: Open an attribute according to its index order * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * April 2, 1998 @@ -515,7 +514,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5A__open_by_idx() */ - + /*------------------------------------------------------------------------- * Function: H5A__open_by_name * @@ -579,7 +578,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5A__open_by_name() */ - + /*-------------------------------------------------------------------------- NAME H5A__read @@ -616,6 +615,10 @@ H5A__read(const H5A_t *attr, const H5T_t *mem_type, void *buf) HDassert(mem_type); HDassert(buf); + /* Patch the top level file pointer in attr->shared->dt->shared->u.vlen.f if needed */ + if(H5T_patch_vlen_file(attr->shared->dt, H5F_VOL_OBJ(attr->oloc.file)) < 0 ) + HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't patch VL datatype file pointer") + /* Create buffer for data to store on disk */ if((snelmts = H5S_GET_EXTENT_NPOINTS(attr->shared->ds)) < 0) HGOTO_ERROR(H5E_ATTR, H5E_CANTCOUNT, FAIL, "dataspace is invalid") @@ -677,12 +680,12 @@ done: if(tconv_buf) tconv_buf = H5FL_BLK_FREE(attr_buf, tconv_buf); if(bkg_buf) - bkg_buf = H5FL_BLK_FREE(attr_buf, bkg_buf); + bkg_buf = H5FL_BLK_FREE(attr_buf, bkg_buf); FUNC_LEAVE_NOAPI_TAG(ret_value) } /* H5A__read() */ - + /*-------------------------------------------------------------------------- NAME H5A__write @@ -796,7 +799,7 @@ done: FUNC_LEAVE_NOAPI_TAG(ret_value) } /* H5A__write() */ - + /*-------------------------------------------------------------------------- NAME H5A__get_name @@ -817,7 +820,7 @@ ssize_t H5A__get_name(H5A_t *attr, size_t buf_size, char *buf) { size_t copy_len, nbytes; - ssize_t ret_value = -1; /* Return value */ + ssize_t ret_value = -1; /* Return value */ FUNC_ENTER_PACKAGE_NOERR @@ -842,7 +845,7 @@ H5A__get_name(H5A_t *attr, size_t buf_size, char *buf) FUNC_LEAVE_NOAPI(ret_value) } /* H5A__get_name() */ - + /*------------------------------------------------------------------------- * Function: H5A_get_space * @@ -879,14 +882,13 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A_get_space() */ - + /*------------------------------------------------------------------------- * Function: H5A__get_type * * Purpose: Returns an ID for the datatype of an attribute * * Return: Success: A valid ID for the datatype of an attribute - * * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- @@ -942,7 +944,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__get_type() */ - + /*-------------------------------------------------------------------------- NAME H5A__get_create_plist @@ -974,7 +976,7 @@ H5A__get_create_plist(H5A_t* attr) /* Create the property list object to return */ if((new_plist_id = H5P_copy_plist(plist, TRUE)) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "unable to copy attribute creation properties") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "unable to copy attribute creation properties") if(NULL == (new_plist = (H5P_genplist_t *)H5I_object(new_plist_id))) HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "can't get property list") @@ -988,7 +990,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__get_create_plist() */ - + /*------------------------------------------------------------------------- * Function: H5A__get_info * @@ -1029,14 +1031,13 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__get_info() */ - + /*------------------------------------------------------------------------- * Function: H5A__copy * * Purpose: Copies attribute OLD_ATTR. * * Return: Success: Pointer to a new copy of the OLD_ATTR argument. - * * Failure: NULL * * Programmer: Robb Matzke @@ -1092,7 +1093,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__copy() */ - + /*------------------------------------------------------------------------- * Function: H5A__shared_free * @@ -1144,7 +1145,7 @@ H5A__shared_free(H5A_t *attr) FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__shared_free() */ - + /*------------------------------------------------------------------------- * Function: H5A__close_cb * @@ -1176,7 +1177,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__close_cb() */ - + /*------------------------------------------------------------------------- * Function: H5A__close * @@ -1227,7 +1228,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__close() */ - + /*------------------------------------------------------------------------- * Function: H5A_oloc * @@ -1259,7 +1260,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A_oloc() */ - + /*------------------------------------------------------------------------- * Function: H5A_nameof * @@ -1291,7 +1292,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A_nameof() */ - + /*------------------------------------------------------------------------- * Function: H5A_type * @@ -1321,7 +1322,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A_type() */ - + /*------------------------------------------------------------------------- * Function: H5A__exists_by_name * @@ -1367,7 +1368,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5A__exists_by_name() */ - + /*------------------------------------------------------------------------- * Function: H5A__compact_build_table_cb * @@ -1377,7 +1378,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Dec 18 2006 * * Modification:Raymond Lu @@ -1428,7 +1428,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__compact_build_table_cb() */ - + /*------------------------------------------------------------------------- * Function: H5A__compact_build_table * @@ -1440,8 +1440,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * Dec 18, 2006 + * Programmer: Quincey Koziol + * Dec 18, 2006 * *------------------------------------------------------------------------- */ @@ -1491,18 +1491,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__compact_build_table() */ - + /*------------------------------------------------------------------------- * Function: H5A__dense_build_table_cb * * Purpose: Callback routine for building table of attributes from dense * attribute storage. * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Dec 11 2006 * *------------------------------------------------------------------------- @@ -1535,7 +1533,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__dense_build_table_cb() */ - + /*------------------------------------------------------------------------- * Function: H5A__dense_build_table * @@ -1620,21 +1618,20 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__dense_build_table() */ - + /*------------------------------------------------------------------------- * Function: H5A__attr_cmp_name_inc * - * Purpose: Callback routine for comparing two attribute names, in + * Purpose: Callback routine for comparing two attribute names, in * increasing alphabetic order * - * Return: An integer less than, equal to, or greater than zero if the + * Return: An integer less than, equal to, or greater than zero if the * first argument is considered to be respectively less than, * equal to, or greater than the second. If two members compare * as equal, their order in the sorted array is undefined. * (i.e. same as strcmp()) * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Dec 11 2006 * *------------------------------------------------------------------------- @@ -1648,7 +1645,7 @@ H5A__attr_cmp_name_inc(const void *attr1, const void *attr2) (*(const H5A_t * const *)attr2)->shared->name)) } /* end H5A__attr_cmp_name_inc() */ - + /*------------------------------------------------------------------------- * Function: H5A__attr_cmp_name_dec * @@ -1662,7 +1659,6 @@ H5A__attr_cmp_name_inc(const void *attr1, const void *attr2) * (i.e. opposite of strcmp()) * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Feb 8 2007 * *------------------------------------------------------------------------- @@ -1676,7 +1672,7 @@ H5A__attr_cmp_name_dec(const void *attr1, const void *attr2) (*(const H5A_t * const *)attr1)->shared->name)) } /* end H5A__attr_cmp_name_dec() */ - + /*------------------------------------------------------------------------- * Function: H5A__attr_cmp_corder_inc * @@ -1689,7 +1685,6 @@ H5A__attr_cmp_name_dec(const void *attr1, const void *attr2) * as equal, their order in the sorted array is undefined. * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Feb 8 2007 * *------------------------------------------------------------------------- @@ -1711,21 +1706,20 @@ H5A__attr_cmp_corder_inc(const void *attr1, const void *attr2) FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__attr_cmp_corder_inc() */ - + /*------------------------------------------------------------------------- * Function: H5A__attr_cmp_corder_dec * - * Purpose: Callback routine for comparing two attributes, in + * Purpose: Callback routine for comparing two attributes, in * decreasing creation order * - * Return: An integer less than, equal to, or greater than zero if the + * Return: An integer less than, equal to, or greater than zero if the * second argument is considered to be respectively less than, * equal to, or greater than the first. If two members compare * as equal, their order in the sorted array is undefined. * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Feb 8 2007 + * Programmer: Quincey Koziol + * Feb 8 2007 * *------------------------------------------------------------------------- */ @@ -1746,17 +1740,16 @@ H5A__attr_cmp_corder_dec(const void *attr1, const void *attr2) FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__attr_cmp_corder_dec() */ - + /*------------------------------------------------------------------------- * Function: H5A__attr_sort_table * * Purpose: Sort table containing a list of attributes for an object * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * Dec 11, 2006 + * Programmer: Quincey Koziol + * Dec 11, 2006 * *------------------------------------------------------------------------- */ @@ -1791,7 +1784,7 @@ H5A__attr_sort_table(H5A_attr_table_t *atable, H5_index_t idx_type, FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5A__attr_sort_table() */ - + /*------------------------------------------------------------------------- * Function: H5A__attr_iterate_table * @@ -1800,8 +1793,8 @@ H5A__attr_sort_table(H5A_attr_table_t *atable, H5_index_t idx_type, * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * Dec 18, 2006 + * Programmer: Quincey Koziol + * Dec 18, 2006 * *------------------------------------------------------------------------- */ @@ -1873,7 +1866,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__attr_iterate_table() */ - + /*------------------------------------------------------------------------- * Function: H5A__attr_release_table * @@ -1881,7 +1874,7 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Dec 11, 2006 * *------------------------------------------------------------------------- @@ -1889,7 +1882,7 @@ done: herr_t H5A__attr_release_table(H5A_attr_table_t *atable) { - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -1914,18 +1907,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__attr_release_table() */ - + /*------------------------------------------------------------------------- * Function: H5A__get_ainfo * * Purpose: Retrieves the "attribute info" message for an object. Also * sets the number of attributes correctly, if it isn't set up yet. * - * Return: Success: TRUE/FALSE whether message was found & retrieved - * Failure: FAIL if error occurred + * Return: TRUE/FALSE/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Mar 11 2007 * *------------------------------------------------------------------------- @@ -1945,11 +1936,11 @@ H5A__get_ainfo(H5F_t *f, H5O_t *oh, H5O_ainfo_t *ainfo) /* Check if the "attribute info" message exists */ if((ret_value = H5O_msg_exists_oh(oh, H5O_AINFO_ID)) < 0) - HGOTO_ERROR(H5E_ATTR, H5E_NOTFOUND, FAIL, "unable to check object header") + HGOTO_ERROR(H5E_ATTR, H5E_NOTFOUND, FAIL, "unable to check object header") if(ret_value > 0) { /* Retrieve the "attribute info" structure */ if(NULL == H5O_msg_read_oh(f, oh, H5O_AINFO_ID, ainfo)) - HGOTO_ERROR(H5E_ATTR, H5E_CANTGET, FAIL, "can't read AINFO message") + HGOTO_ERROR(H5E_ATTR, H5E_CANTGET, FAIL, "can't read AINFO message") /* Check if we don't know how many attributes there are */ if(ainfo->nattrs == HSIZET_MAX) { @@ -1978,7 +1969,7 @@ done: FUNC_LEAVE_NOAPI_TAG(ret_value) } /* end H5A__get_ainfo() */ - + /*------------------------------------------------------------------------- * Function: H5A__set_version * @@ -1989,7 +1980,6 @@ done: * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Jul 17 2007 * *------------------------------------------------------------------------- @@ -2040,7 +2030,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__set_version() */ - + /*------------------------------------------------------------------------- * Function: H5A__attr_copy_file * @@ -2250,10 +2240,10 @@ H5A__attr_copy_file(const H5A_t *attr_src, H5F_t *file_dst, hbool_t *recompute_s H5MM_memcpy(buf, attr_src->shared->data, attr_src->shared->data_size); - /* Allocate background memory */ - if(H5T_path_bkg(tpath_src_mem) || H5T_path_bkg(tpath_mem_dst)) - if(NULL == (bkg_buf = H5FL_BLK_CALLOC(attr_buf, buf_size))) - HGOTO_ERROR(H5E_ATTR, H5E_CANTALLOC, NULL, "memory allocation failed") + /* Allocate background memory */ + if(H5T_path_bkg(tpath_src_mem) || H5T_path_bkg(tpath_mem_dst)) + if(NULL == (bkg_buf = H5FL_BLK_CALLOC(attr_buf, buf_size))) + HGOTO_ERROR(H5E_ATTR, H5E_CANTALLOC, NULL, "memory allocation failed") /* Convert from source file to memory */ if(H5T_convert(tpath_src_mem, tid_src, tid_mem, nelmts, (size_t)0, (size_t)0, buf, bkg_buf) < 0) @@ -2261,9 +2251,9 @@ H5A__attr_copy_file(const H5A_t *attr_src, H5F_t *file_dst, hbool_t *recompute_s H5MM_memcpy(reclaim_buf, buf, buf_size); - /* Set background buffer to all zeros */ - if(bkg_buf) - HDmemset(bkg_buf, 0, buf_size); + /* Set background buffer to all zeros */ + if(bkg_buf) + HDmemset(bkg_buf, 0, buf_size); /* Convert from memory to destination file */ if(H5T_convert(tpath_mem_dst, tid_mem, tid_dst, nelmts, (size_t)0, (size_t)0, buf, bkg_buf) < 0) @@ -2323,7 +2313,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5A__attr_copy_file() */ - + /*------------------------------------------------------------------------- * Function: H5A__attr_post_copy_file * @@ -2416,7 +2406,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5A__attr_post_copy_file() */ - + /*------------------------------------------------------------------------- * Function: H5A__dense_post_copy_file_cb * @@ -2474,7 +2464,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__dense_post_copy_file_cb() */ - + /*------------------------------------------------------------------------- * Function: H5A__dense_post_copy_file_all * @@ -2483,7 +2473,6 @@ done: * Return: SUCCEED/FAIL * * Programmer: Peter Cao - * xcao@hdfgroup.org * July 20, 2007 * *------------------------------------------------------------------------- @@ -2521,7 +2510,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__dense_post_copy_file_all */ - + /*------------------------------------------------------------------------- * Function: H5A__rename_by_name * @@ -2529,7 +2518,7 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * February 20, 2007 * *------------------------------------------------------------------------- @@ -2539,10 +2528,10 @@ H5A__rename_by_name(H5G_loc_t loc, const char *obj_name, const char *old_attr_na const char *new_attr_name) { H5G_loc_t obj_loc; /* Location used to open group */ - H5G_name_t obj_path; /* Opened object group hier. path */ - H5O_loc_t obj_oloc; /* Opened object object location */ + H5G_name_t obj_path; /* Opened object group hier. path */ + H5O_loc_t obj_oloc; /* Opened object object location */ hbool_t loc_found = FALSE; /* Entry at 'obj_name' found */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -2571,7 +2560,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5A__rename_by_name() */ - + /*------------------------------------------------------------------------- * Function: H5A__iterate_common * @@ -2579,7 +2568,7 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * December 6, 2017 * *------------------------------------------------------------------------- @@ -2606,7 +2595,7 @@ H5A__iterate_common(hid_t loc_id, H5_index_t idx_type, H5_iter_order_t order, FUNC_LEAVE_NOAPI(ret_value) } /* H5A__iterate_common() */ - + /*------------------------------------------------------------------------- * Function: H5A__iterate * @@ -2671,7 +2660,7 @@ done: } /* end H5A__iterate() */ #ifndef H5_NO_DEPRECATED_SYMBOLS - + /*------------------------------------------------------------------------- * Function: H5A__iterate_old * @@ -2679,7 +2668,7 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * December 6, 2017 * *------------------------------------------------------------------------- @@ -2721,7 +2710,7 @@ H5A__iterate_old(hid_t loc_id, unsigned *attr_num, H5A_operator1_t op, * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * December 6, 2017 * *------------------------------------------------------------------------- @@ -2730,8 +2719,8 @@ herr_t H5A__delete_by_name(const H5G_loc_t *loc, const char *obj_name, const char *attr_name) { H5G_loc_t obj_loc; /* Location used to open group */ - H5G_name_t obj_path; /* Opened object group hier. path */ - H5O_loc_t obj_oloc; /* Opened object object location */ + H5G_name_t obj_path; /* Opened object group hier. path */ + H5O_loc_t obj_oloc; /* Opened object object location */ hbool_t loc_found = FALSE; /* Entry at 'obj_name' found */ herr_t ret_value = SUCCEED; /* Return value */ @@ -2759,7 +2748,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5A__delete_by_name() */ - + /*------------------------------------------------------------------------- * Function: H5A__delete_by_idx * @@ -2767,7 +2756,7 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * December 6, 2017 * *------------------------------------------------------------------------- @@ -2777,8 +2766,8 @@ H5A__delete_by_idx(const H5G_loc_t *loc, const char *obj_name, H5_index_t idx_ty H5_iter_order_t order, hsize_t n) { H5G_loc_t obj_loc; /* Location used to open group */ - H5G_name_t obj_path; /* Opened object group hier. path */ - H5O_loc_t obj_oloc; /* Opened object object location */ + H5G_name_t obj_path; /* Opened object group hier. path */ + H5O_loc_t obj_oloc; /* Opened object object location */ hbool_t loc_found = FALSE; /* Entry at 'obj_name' found */ herr_t ret_value = SUCCEED; /* Return value */ @@ -15,7 +15,7 @@ * * Created: H5B2.c * Jan 31 2005 - * Quincey Koziol <koziol@ncsa.uiuc.edu> + * Quincey Koziol * * Purpose: Implements a B-tree, with several modifications from * the "standard" methods. @@ -129,7 +129,6 @@ H5FL_DEFINE_STATIC(H5B2_t); * filled in), negative on failure * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Jan 31 2005 * *------------------------------------------------------------------------- @@ -200,7 +199,6 @@ done: * NULL on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Oct 15 2009 * *------------------------------------------------------------------------- @@ -264,7 +262,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Feb 2 2005 * *------------------------------------------------------------------------- @@ -307,7 +304,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Dec 23 2015 * *------------------------------------------------------------------------- @@ -379,7 +375,6 @@ done: * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Nov 5 2009 * *------------------------------------------------------------------------- @@ -414,7 +409,6 @@ H5B2_get_addr(const H5B2_t *bt2, haddr_t *addr_p) * Return: Value from callback: non-negative on success, negative on error * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Feb 11 2005 * *------------------------------------------------------------------------- @@ -465,7 +459,6 @@ H5B2_iterate(H5B2_t *bt2, H5B2_operator_t op, void *op_data) * Return: Non-negative (TRUE/FALSE) on success, negative on failure. * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Feb 23 2005 * *------------------------------------------------------------------------- @@ -705,7 +698,6 @@ done: * Return: Non-negative on success, negative on failure. * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Feb 23 2005 * *------------------------------------------------------------------------- @@ -894,7 +886,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Feb 25 2005 * *------------------------------------------------------------------------- @@ -968,7 +959,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Nov 14 2006 * *------------------------------------------------------------------------- @@ -1051,7 +1041,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Feb 25 2005 * *------------------------------------------------------------------------- @@ -1092,7 +1081,6 @@ H5B2_get_nrec(const H5B2_t *bt2, hsize_t *nrec) * Return: Non-negative on success, negative on failure. * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Mar 8 2005 * *------------------------------------------------------------------------- @@ -1150,7 +1138,6 @@ done: * Return: Non-negative on success, negative on failure. * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Mar 10 2005 * *------------------------------------------------------------------------- @@ -1384,7 +1371,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Oct 15 2009 * *------------------------------------------------------------------------- @@ -1493,7 +1479,6 @@ done: * Return: Non-negative on success, negative on failure. * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Mar 9 2005 * *------------------------------------------------------------------------- diff --git a/src/H5B2hdr.c b/src/H5B2hdr.c index 68669e8..9ba8235 100644 --- a/src/H5B2hdr.c +++ b/src/H5B2hdr.c @@ -15,7 +15,7 @@ * * Created: H5B2int.c * Feb 27 2006 - * Quincey Koziol <koziol@ncsa.uiuc.edu> + * Quincey Koziol * * Purpose: Internal routines for managing v2 B-trees. * @@ -101,7 +101,6 @@ H5FL_SEQ_DEFINE(H5B2_node_info_t); * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Feb 2 2005 * *------------------------------------------------------------------------- @@ -230,7 +229,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Oct 27 2009 * *------------------------------------------------------------------------- @@ -276,7 +274,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Mar 21 2006 * *------------------------------------------------------------------------- @@ -355,7 +352,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Oct 13 2009 * *------------------------------------------------------------------------- @@ -391,7 +387,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Oct 13 2009 * *------------------------------------------------------------------------- @@ -428,7 +423,6 @@ done: * Return: SUCCEED (Can't fail) * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Oct 27 2009 * *------------------------------------------------------------------------- @@ -456,7 +450,6 @@ H5B2__hdr_fuse_incr(H5B2_hdr_t *hdr) * Return: The file's reference count after the decrement. (Can't fail) * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Oct 27 2009 * *------------------------------------------------------------------------- @@ -485,7 +478,6 @@ H5B2__hdr_fuse_decr(H5B2_hdr_t *hdr) * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Oct 13 2009 * *------------------------------------------------------------------------- @@ -517,7 +509,6 @@ done: * Return: Non-NULL pointer to header on success/NULL on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Dec 18 2015 * *------------------------------------------------------------------------- diff --git a/src/H5B2pkg.h b/src/H5B2pkg.h index 338db5a..7d73752 100644 --- a/src/H5B2pkg.h +++ b/src/H5B2pkg.h @@ -12,7 +12,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> + * Programmer: Quincey Koziol * Monday, January 31, 2005 * * Purpose: This file contains declarations which are visible only within diff --git a/src/H5B2private.h b/src/H5B2private.h index 0b64381..9303d4f 100644 --- a/src/H5B2private.h +++ b/src/H5B2private.h @@ -15,7 +15,7 @@ * * Created: H5B2private.h * Jan 31 2005 - * Quincey Koziol <koziol@ncsa.uiuc.edu> + * Quincey Koziol * * Purpose: Private header for library accessible B-tree routines. * diff --git a/src/H5Bdbg.c b/src/H5Bdbg.c index 665e826..d900852 100644 --- a/src/H5Bdbg.c +++ b/src/H5Bdbg.c @@ -13,11 +13,11 @@ /*------------------------------------------------------------------------- * - * Created: H5Bdbg.c - * Dec 11 2008 - * Quincey Koziol <koziol@hdfgroup.org> + * Created: H5Bdbg.c + * Dec 11 2008 + * Quincey Koziol * - * Purpose: Debugging routines for B-link tree package. + * Purpose: Debugging routines for B-link tree package. * *------------------------------------------------------------------------- */ @@ -32,35 +32,33 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Bpkg.h" /* B-link trees */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5MMprivate.h" /* Memory management */ +#include "H5private.h" /* Generic Functions */ +#include "H5Bpkg.h" /* B-link trees */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5MMprivate.h" /* Memory management */ /*------------------------------------------------------------------------- - * Function: H5B_debug + * Function: H5B_debug * - * Purpose: Prints debugging info about a B-tree. + * Purpose: Prints debugging info about a B-tree. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke - * matzke@llnl.gov - * Aug 4 1997 + * Programmer: Robb Matzke + * Aug 4 1997 * *------------------------------------------------------------------------- */ herr_t -H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, - const H5B_class_t *type, void *udata) +H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, const H5B_class_t *type, void *udata) { - H5B_t *bt = NULL; - H5UC_t *rc_shared; /* Ref-counted shared info */ + H5B_t *bt = NULL; + H5UC_t *rc_shared; /* Ref-counted shared info */ H5B_shared_t *shared; /* Pointer to shared B-tree info */ H5B_cache_ud_t cache_udata; /* User-data for metadata cache callback */ - unsigned u; /* Local index variable */ + unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -97,55 +95,53 @@ H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, * Print the values. */ HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth, - "Tree type ID:", - ((shared->type->id) == H5B_SNODE_ID ? "H5B_SNODE_ID" : + "Tree type ID:", + ((shared->type->id) == H5B_SNODE_ID ? "H5B_SNODE_ID" : ((shared->type->id) == H5B_CHUNK_ID ? "H5B_CHUNK_ID" : "Unknown!"))); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "Size of node:", - shared->sizeof_rnode); + "Size of node:", + shared->sizeof_rnode); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "Size of raw (disk) key:", - shared->sizeof_rkey); + "Size of raw (disk) key:", + shared->sizeof_rkey); HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth, - "Dirty flag:", - bt->cache_info.is_dirty ? "True" : "False"); + "Dirty flag:", + bt->cache_info.is_dirty ? "True" : "False"); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Level:", - bt->level); + "Level:", + bt->level); HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth, - "Address of left sibling:", - bt->left); + "Address of left sibling:", + bt->left); HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth, - "Address of right sibling:", - bt->right); + "Address of right sibling:", + bt->right); HDfprintf(stream, "%*s%-*s %u (%u)\n", indent, "", fwidth, - "Number of children (max):", - bt->nchildren, shared->two_k); + "Number of children (max):", + bt->nchildren, shared->two_k); /* * Print the child addresses */ for(u = 0; u < bt->nchildren; u++) { - HDfprintf(stream, "%*sChild %d...\n", indent, "", u); - HDfprintf(stream, "%*s%-*s %a\n", indent + 3, "", MAX(0, fwidth - 3), - "Address:", bt->child[u]); + HDfprintf(stream, "%*sChild %d...\n", indent, "", u); + HDfprintf(stream, "%*s%-*s %a\n", indent + 3, "", MAX(0, fwidth - 3), + "Address:", bt->child[u]); /* If there is a key debugging routine, use it to display the left & right keys */ - if(type->debug_key) { + if(type->debug_key) { /* Decode the 'left' key & print it */ HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3), "Left Key:"); HDassert(H5B_NKEY(bt,shared,u)); - (void)(type->debug_key)(stream, indent + 6, MAX(0, fwidth - 6), - H5B_NKEY(bt, shared, u), udata); + (void)(type->debug_key)(stream, indent + 6, MAX(0, fwidth - 6), H5B_NKEY(bt, shared, u), udata); /* Decode the 'right' key & print it */ HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3), "Right Key:"); HDassert(H5B_NKEY(bt, shared, u + 1)); - (void)(type->debug_key)(stream, indent + 6, MAX (0, fwidth - 6), - H5B_NKEY(bt, shared, u + 1), udata); - } /* end if */ + (void)(type->debug_key)(stream, indent + 6, MAX (0, fwidth - 6), H5B_NKEY(bt, shared, u + 1), udata); + } /* end if */ } /* end for */ done: @@ -157,16 +153,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5B__assert + * Function: H5B__assert * - * Purpose: Verifies that the tree is structured correctly. + * Purpose: Verifies that the tree is structured correctly. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: aborts if something is wrong. + * Failure: aborts if something is wrong. * - * Programmer: Robb Matzke - * Tuesday, November 4, 1997 + * Programmer: Robb Matzke + * Tuesday, November 4, 1997 * *------------------------------------------------------------------------- */ @@ -174,20 +170,20 @@ done: herr_t H5B__assert(H5F_t *f, haddr_t addr, const H5B_class_t *type, void *udata) { - H5B_t *bt = NULL; - H5UC_t *rc_shared; /* Ref-counted shared info */ + H5B_t *bt = NULL; + H5UC_t *rc_shared; /* Ref-counted shared info */ H5B_shared_t *shared; /* Pointer to shared B-tree info */ H5B_cache_ud_t cache_udata; /* User-data for metadata cache callback */ - int ncell, cmp; - static int ncalls = 0; - herr_t status; + int ncell, cmp; + static int ncalls = 0; + herr_t status; herr_t ret_value = SUCCEED; /* Return value */ /* A queue of child data */ struct child_t { - haddr_t addr; - unsigned level; - struct child_t *next; + haddr_t addr; + unsigned level; + struct child_t *next; } *head = NULL, *tail = NULL, *prev = NULL, *cur = NULL, *tmp = NULL; FUNC_ENTER_PACKAGE @@ -228,60 +224,60 @@ H5B__assert(H5F_t *f, haddr_t addr, const H5B_class_t *type, void *udata) * test. */ for(ncell = 0; cur; ncell++) { - bt = (H5B_t *)H5AC_protect(f, H5AC_BT, cur->addr, &cache_udata, H5AC__READ_ONLY_FLAG); - HDassert(bt); - - /* Check node header */ - HDassert(bt->level == cur->level); - if(cur->next && cur->next->level == bt->level) - HDassert(H5F_addr_eq(bt->right, cur->next->addr)); - else - HDassert(!H5F_addr_defined(bt->right)); - if(prev && prev->level == bt->level) - HDassert(H5F_addr_eq(bt->left, prev->addr)); - else - HDassert(!H5F_addr_defined(bt->left)); - - if(cur->level > 0) { + bt = (H5B_t *)H5AC_protect(f, H5AC_BT, cur->addr, &cache_udata, H5AC__READ_ONLY_FLAG); + HDassert(bt); + + /* Check node header */ + HDassert(bt->level == cur->level); + if(cur->next && cur->next->level == bt->level) + HDassert(H5F_addr_eq(bt->right, cur->next->addr)); + else + HDassert(!H5F_addr_defined(bt->right)); + if(prev && prev->level == bt->level) + HDassert(H5F_addr_eq(bt->left, prev->addr)); + else + HDassert(!H5F_addr_defined(bt->left)); + + if(cur->level > 0) { unsigned u; - for(u = 0; u < bt->nchildren; u++) { - /* - * Check that child nodes haven't already been seen. If they - * have then the tree has a cycle. - */ - for(tmp = head; tmp; tmp = tmp->next) - HDassert(H5F_addr_ne(tmp->addr, bt->child[u])); - - /* Add the child node to the end of the queue */ - tmp = (struct child_t *)H5MM_calloc(sizeof(struct child_t)); - HDassert(tmp); - tmp->addr = bt->child[u]; - tmp->level = bt->level - 1; - tail->next = tmp; - tail = tmp; - - /* Check that the keys are monotonically increasing */ - cmp = (type->cmp2)(H5B_NKEY(bt, shared, u), udata, H5B_NKEY(bt, shared, u + 1)); - HDassert(cmp < 0); - } /* end for */ - } /* end if */ - - /* Release node */ - status = H5AC_unprotect(f, H5AC_BT, cur->addr, bt, H5AC__NO_FLAGS_SET); - HDassert(status >= 0); + for(u = 0; u < bt->nchildren; u++) { + /* + * Check that child nodes haven't already been seen. If they + * have then the tree has a cycle. + */ + for(tmp = head; tmp; tmp = tmp->next) + HDassert(H5F_addr_ne(tmp->addr, bt->child[u])); + + /* Add the child node to the end of the queue */ + tmp = (struct child_t *)H5MM_calloc(sizeof(struct child_t)); + HDassert(tmp); + tmp->addr = bt->child[u]; + tmp->level = bt->level - 1; + tail->next = tmp; + tail = tmp; + + /* Check that the keys are monotonically increasing */ + cmp = (type->cmp2)(H5B_NKEY(bt, shared, u), udata, H5B_NKEY(bt, shared, u + 1)); + HDassert(cmp < 0); + } /* end for */ + } /* end if */ + + /* Release node */ + status = H5AC_unprotect(f, H5AC_BT, cur->addr, bt, H5AC__NO_FLAGS_SET); + HDassert(status >= 0); bt = NULL; /* Make certain future references will be caught */ - /* Advance current location in queue */ - prev = cur; - cur = cur->next; + /* Advance current location in queue */ + prev = cur; + cur = cur->next; } /* end for */ /* Free all entries from queue */ while(head) { - tmp = head->next; - H5MM_xfree(head); - head = tmp; + tmp = head->next; + H5MM_xfree(head); + head = tmp; } /* end while */ done: diff --git a/src/H5Bmodule.h b/src/H5Bmodule.h index bc46752..c8e1546 100644 --- a/src/H5Bmodule.h +++ b/src/H5Bmodule.h @@ -11,7 +11,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Programmer: Quincey Koziol * Saturday, September 12, 2015 * * Purpose: This file contains declarations which define macros for the diff --git a/src/H5Bpkg.h b/src/H5Bpkg.h index a451cab..a57584e 100644 --- a/src/H5Bpkg.h +++ b/src/H5Bpkg.h @@ -12,7 +12,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> + * Programmer: Quincey Koziol * Thursday, May 15, 2003 * * Purpose: This file contains declarations which are visible only within diff --git a/src/H5Bprivate.h b/src/H5Bprivate.h index 5aa3628..55bf5b3 100644 --- a/src/H5Bprivate.h +++ b/src/H5Bprivate.h @@ -15,12 +15,10 @@ * * Created: H5Bprivate.h * Jul 10 1997 - * Robb Matzke <matzke@llnl.gov> + * Robb Matzke * * Purpose: Private non-prototype header. * - * Modifications: - * *------------------------------------------------------------------------- */ diff --git a/src/H5CXmodule.h b/src/H5CXmodule.h index f6a8f29..186f8aa 100644 --- a/src/H5CXmodule.h +++ b/src/H5CXmodule.h @@ -11,7 +11,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@lbl.gov> + * Programmer: Quincey Koziol * Sunday, February 25, 2018 * * Purpose: This file contains declarations which define macros for the diff --git a/src/H5Cmpio.c b/src/H5Cmpio.c index 0ac4c4f..199c494 100644 --- a/src/H5Cmpio.c +++ b/src/H5Cmpio.c @@ -18,7 +18,7 @@ * Quincey Koziol * * Purpose: Functions in this file implement support for parallel I/O for - * generic cache code. + * generic cache code. * *------------------------------------------------------------------------- */ @@ -28,20 +28,20 @@ /****************/ #include "H5Cmodule.h" /* This source code file is part of the H5C module */ -#define H5F_FRIEND /*suppress error about including H5Fpkg */ +#define H5F_FRIEND /*suppress error about including H5Fpkg */ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ +#include "H5private.h" /* Generic Functions */ #include "H5ACprivate.h" /* Metadata cache */ -#include "H5Cpkg.h" /* Cache */ +#include "H5Cpkg.h" /* Cache */ #include "H5CXprivate.h" /* API Contexts */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fpkg.h" /* Files */ -#include "H5FDprivate.h" /* File drivers */ -#include "H5MMprivate.h" /* Memory management */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fpkg.h" /* Files */ +#include "H5FDprivate.h" /* File drivers */ +#include "H5MMprivate.h" /* Memory management */ #ifdef H5_HAVE_PARALLEL @@ -87,74 +87,74 @@ static herr_t H5C__flush_candidates_in_ring(H5F_t *f, H5C_ring_t ring, * * Purpose: Apply the supplied candidate list. * - * We used to do this by simply having each process write - * every mpi_size-th entry in the candidate list, starting - * at index mpi_rank, and mark all the others clean. + * We used to do this by simply having each process write + * every mpi_size-th entry in the candidate list, starting + * at index mpi_rank, and mark all the others clean. * - * However, this can cause unnecessary contention in a file - * system by increasing the number of processes writing to - * adjacent locations in the HDF5 file. + * However, this can cause unnecessary contention in a file + * system by increasing the number of processes writing to + * adjacent locations in the HDF5 file. * - * To attempt to minimize this, we now arange matters such - * that each process writes n adjacent entries in the - * candidate list, and marks all others clean. We must do - * this in such a fashion as to guarantee that each entry - * on the candidate list is written by exactly one process, - * and marked clean by all others. + * To attempt to minimize this, we now arange matters such + * that each process writes n adjacent entries in the + * candidate list, and marks all others clean. We must do + * this in such a fashion as to guarantee that each entry + * on the candidate list is written by exactly one process, + * and marked clean by all others. * - * To do this, first construct a table mapping mpi_rank - * to the index of the first entry in the candidate list to - * be written by the process of that mpi_rank, and then use - * the table to control which entries are written and which - * are marked as clean as a function of the mpi_rank. + * To do this, first construct a table mapping mpi_rank + * to the index of the first entry in the candidate list to + * be written by the process of that mpi_rank, and then use + * the table to control which entries are written and which + * are marked as clean as a function of the mpi_rank. * - * Note that the table must be identical on all processes, as - * all see the same candidate list, mpi_size, and mpi_rank -- - * the inputs used to construct the table. + * Note that the table must be identical on all processes, as + * all see the same candidate list, mpi_size, and mpi_rank -- + * the inputs used to construct the table. * - * We construct the table as follows. Let: + * We construct the table as follows. Let: * - * n = num_candidates / mpi_size; + * n = num_candidates / mpi_size; * - * m = num_candidates % mpi_size; + * m = num_candidates % mpi_size; * - * Now allocate an array of integers of length mpi_size + 1, - * and call this array candidate_assignment_table. + * Now allocate an array of integers of length mpi_size + 1, + * and call this array candidate_assignment_table. * - * Conceptually, if the number of candidates is a multiple - * of the mpi_size, we simply pass through the candidate list - * and assign n entries to each process to flush, with the - * index of the first entry to flush in the location in - * the candidate_assignment_table indicated by the mpi_rank - * of the process. + * Conceptually, if the number of candidates is a multiple + * of the mpi_size, we simply pass through the candidate list + * and assign n entries to each process to flush, with the + * index of the first entry to flush in the location in + * the candidate_assignment_table indicated by the mpi_rank + * of the process. * - * In the more common case in which the candidate list isn't - * isn't a multiple of the mpi_size, we pretend it is, and - * give num_candidates % mpi_size processes one extra entry - * each to make things work out. + * In the more common case in which the candidate list isn't + * isn't a multiple of the mpi_size, we pretend it is, and + * give num_candidates % mpi_size processes one extra entry + * each to make things work out. * - * Once the table is constructed, we determine the first and - * last entry this process is to flush as follows: + * Once the table is constructed, we determine the first and + * last entry this process is to flush as follows: * - * first_entry_to_flush = candidate_assignment_table[mpi_rank] + * first_entry_to_flush = candidate_assignment_table[mpi_rank] * - * last_entry_to_flush = - * candidate_assignment_table[mpi_rank + 1] - 1; + * last_entry_to_flush = + * candidate_assignment_table[mpi_rank + 1] - 1; * - * With these values determined, we simply scan through the - * candidate list, marking all entries in the range - * [first_entry_to_flush, last_entry_to_flush] for flush, - * and all others to be cleaned. + * With these values determined, we simply scan through the + * candidate list, marking all entries in the range + * [first_entry_to_flush, last_entry_to_flush] for flush, + * and all others to be cleaned. * - * Finally, we scan the LRU from tail to head, flushing - * or marking clean the candidate entries as indicated. - * If necessary, we scan the pinned list as well. + * Finally, we scan the LRU from tail to head, flushing + * or marking clean the candidate entries as indicated. + * If necessary, we scan the pinned list as well. * - * Note that this function will fail if any protected or - * clean entries appear on the candidate list. + * Note that this function will fail if any protected or + * clean entries appear on the candidate list. * - * This function is used in managing sync points, and - * shouldn't be used elsewhere. + * This function is used in managing sync points, and + * shouldn't be used elsewhere. * * Return: Success: SUCCEED * @@ -176,20 +176,20 @@ H5C_apply_candidate_list(H5F_t * f, int i; int m; unsigned n; - unsigned first_entry_to_flush; - unsigned last_entry_to_flush; - unsigned total_entries_to_clear = 0; - unsigned total_entries_to_flush = 0; + unsigned first_entry_to_flush; + unsigned last_entry_to_flush; + unsigned total_entries_to_clear = 0; + unsigned total_entries_to_flush = 0; unsigned * candidate_assignment_table = NULL; unsigned entries_to_flush[H5C_RING_NTYPES]; unsigned entries_to_clear[H5C_RING_NTYPES]; - haddr_t addr; - H5C_cache_entry_t * entry_ptr = NULL; + haddr_t addr; + H5C_cache_entry_t * entry_ptr = NULL; #if H5C_DO_SANITY_CHECKS - haddr_t last_addr; + haddr_t last_addr; #endif /* H5C_DO_SANITY_CHECKS */ #if H5C_APPLY_CANDIDATE_LIST__DEBUG - char tbl_buf[1024]; + char tbl_buf[1024]; #endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */ unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ @@ -413,10 +413,10 @@ done: * Function: H5C_construct_candidate_list__clean_cache * * Purpose: Construct the list of entries that should be flushed to - * clean all entries in the cache. + * clean all entries in the cache. * - * This function is used in managing sync points, and - * shouldn't be used elsewhere. + * This function is used in managing sync points, and + * shouldn't be used elsewhere. * * Return: Success: SUCCEED * @@ -457,7 +457,7 @@ H5C_construct_candidate_list__clean_cache(H5C_t * cache_ptr) H5C_cache_entry_t *entry_ptr; unsigned nominated_entries_count = 0; size_t nominated_entries_size = 0; - haddr_t nominated_addr; + haddr_t nominated_addr; HDassert( cache_ptr->slist_len > 0 ); @@ -522,10 +522,10 @@ done: * Function: H5C_construct_candidate_list__min_clean * * Purpose: Construct the list of entries that should be flushed to - * get the cache back within its min clean constraints. + * get the cache back within its min clean constraints. * - * This function is used in managing sync points, and - * shouldn't be used elsewhere. + * This function is used in managing sync points, and + * shouldn't be used elsewhere. * * Return: Success: SUCCEED * @@ -582,7 +582,7 @@ H5C_construct_candidate_list__min_clean(H5C_t * cache_ptr) (nominated_entries_count < cache_ptr->slist_len) && (entry_ptr != NULL) && (!entry_ptr->flush_me_last)) { - haddr_t nominated_addr; + haddr_t nominated_addr; HDassert( ! (entry_ptr->is_protected) ); HDassert( ! (entry_ptr->is_read_only) ); @@ -612,24 +612,24 @@ done: * Function: H5C_mark_entries_as_clean * * Purpose: When the H5C code is used to implement the metadata caches - * in PHDF5, only the cache with MPI_rank 0 is allowed to - * actually write entries to disk -- all other caches must - * retain dirty entries until they are advised that the - * entries are clean. + * in PHDF5, only the cache with MPI_rank 0 is allowed to + * actually write entries to disk -- all other caches must + * retain dirty entries until they are advised that the + * entries are clean. * - * This function exists to allow the H5C code to receive these - * notifications. + * This function exists to allow the H5C code to receive these + * notifications. * - * The function receives a list of entry base addresses - * which must refer to dirty entries in the cache. If any - * of the entries are either clean or don't exist, the - * function flags an error. + * The function receives a list of entry base addresses + * which must refer to dirty entries in the cache. If any + * of the entries are either clean or don't exist, the + * function flags an error. * - * The function scans the list of entries and flushes all - * those that are currently unprotected with the - * H5C__FLUSH_CLEAR_ONLY_FLAG. Those that are currently - * protected are flagged for clearing when they are - * unprotected. + * The function scans the list of entries and flushes all + * those that are currently unprotected with the + * H5C__FLUSH_CLEAR_ONLY_FLAG. Those that are currently + * protected are flagged for clearing when they are + * unprotected. * * Return: Non-negative on success/Negative on failure * @@ -644,22 +644,22 @@ H5C_mark_entries_as_clean(H5F_t * f, haddr_t * ce_array_ptr) { H5C_t * cache_ptr; - unsigned entries_cleared; + unsigned entries_cleared; unsigned pinned_entries_cleared; hbool_t progress; - unsigned entries_examined; - unsigned initial_list_len; - haddr_t addr; - unsigned pinned_entries_marked = 0; + unsigned entries_examined; + unsigned initial_list_len; + haddr_t addr; + unsigned pinned_entries_marked = 0; #if H5C_DO_SANITY_CHECKS - unsigned protected_entries_marked = 0; - unsigned other_entries_marked = 0; - haddr_t last_addr; + unsigned protected_entries_marked = 0; + unsigned other_entries_marked = 0; + haddr_t last_addr; #endif /* H5C_DO_SANITY_CHECKS */ - H5C_cache_entry_t * clear_ptr = NULL; - H5C_cache_entry_t * entry_ptr = NULL; + H5C_cache_entry_t * clear_ptr = NULL; + H5C_cache_entry_t * entry_ptr = NULL; unsigned u; - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -706,7 +706,7 @@ H5C_mark_entries_as_clean(H5F_t * f, if(entry_ptr == NULL) { #if H5C_DO_SANITY_CHECKS - HDfprintf(stdout, + HDfprintf(stdout, "H5C_mark_entries_as_clean: entry[%u] = %a not in cache.\n", u, addr); @@ -715,7 +715,7 @@ H5C_mark_entries_as_clean(H5F_t * f, } /* end if */ else if(!entry_ptr->is_dirty) { #if H5C_DO_SANITY_CHECKS - HDfprintf(stdout, + HDfprintf(stdout, "H5C_mark_entries_as_clean: entry %a is not dirty!?!\n", addr); #endif /* H5C_DO_SANITY_CHECKS */ @@ -735,13 +735,13 @@ H5C_mark_entries_as_clean(H5F_t * f, } /* end if */ entry_ptr->clear_on_unprotect = TRUE; - if(entry_ptr->is_pinned) - pinned_entries_marked++; + if(entry_ptr->is_pinned) + pinned_entries_marked++; #if H5C_DO_SANITY_CHECKS - else if(entry_ptr->is_protected) - protected_entries_marked++; - else - other_entries_marked++; + else if(entry_ptr->is_protected) + protected_entries_marked++; + else + other_entries_marked++; #endif /* H5C_DO_SANITY_CHECKS */ } } @@ -769,7 +769,7 @@ H5C_mark_entries_as_clean(H5F_t * f, * of the pre_serialize / serialize routines, this may * cease to be the case -- requiring a review of this * point. - * JRM -- 4/7/15 + * JRM -- 4/7/15 */ entries_cleared = 0; entries_examined = 0; @@ -873,9 +873,9 @@ done: herr_t H5C_clear_coll_entries(H5C_t *cache_ptr, hbool_t partial) { - uint32_t clear_cnt; - H5C_cache_entry_t * entry_ptr = NULL; - herr_t ret_value = SUCCEED; + uint32_t clear_cnt; + H5C_cache_entry_t * entry_ptr = NULL; + herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI_NOINIT @@ -1084,7 +1084,7 @@ done: /*------------------------------------------------------------------------- * Function: H5C__flush_candidate_entries * - * Purpose: Flush or clear (as indicated) the candidate entries that + * Purpose: Flush or clear (as indicated) the candidate entries that * have been marked in the metadata cache. In so doing, * observe rings and flush dependencies. * @@ -1113,9 +1113,9 @@ done: * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer - * 2/10/17 + * 2/10/17 * - * Changes: None. + * Changes: None. * *------------------------------------------------------------------------- */ @@ -1124,17 +1124,17 @@ H5C__flush_candidate_entries(H5F_t *f, unsigned entries_to_flush[H5C_RING_NTYPES unsigned entries_to_clear[H5C_RING_NTYPES]) { #if H5C_DO_SANITY_CHECKS - int i; - uint32_t index_len = 0; - size_t index_size = (size_t)0; - size_t clean_index_size = (size_t)0; - size_t dirty_index_size = (size_t)0; - size_t slist_size = (size_t)0; - uint32_t slist_len = 0; + int i; + uint32_t index_len = 0; + size_t index_size = (size_t)0; + size_t clean_index_size = (size_t)0; + size_t dirty_index_size = (size_t)0; + size_t slist_size = (size_t)0; + uint32_t slist_len = 0; #endif /* H5C_DO_SANITY_CHECKS */ - H5C_ring_t ring; + H5C_ring_t ring; H5C_t * cache_ptr; - herr_t ret_value = SUCCEED; + herr_t ret_value = SUCCEED; FUNC_ENTER_STATIC @@ -1164,7 +1164,7 @@ H5C__flush_candidate_entries(H5F_t *f, unsigned entries_to_flush[H5C_RING_NTYPES clean_index_size += cache_ptr->clean_index_ring_size[i]; dirty_index_size += cache_ptr->dirty_index_ring_size[i]; - slist_len += cache_ptr->slist_ring_len[i]; + slist_len += cache_ptr->slist_ring_len[i]; slist_size += cache_ptr->slist_ring_size[i]; } /* end for */ @@ -1206,7 +1206,7 @@ done: /*------------------------------------------------------------------------- * Function: H5C__flush_candidates_in_ring * - * Purpose: Flush or clear (as indicated) the candidate entries + * Purpose: Flush or clear (as indicated) the candidate entries * contained in the specified cache and ring. All candidate * entries in rings outside the specified ring must have been * flushed (or cleared) on entry. @@ -1235,7 +1235,7 @@ done: * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer - * 2/10/17 + * 2/10/17 * *------------------------------------------------------------------------- */ diff --git a/src/H5Dbtree2.c b/src/H5Dbtree2.c index ae98654..ccb786b 100644 --- a/src/H5Dbtree2.c +++ b/src/H5Dbtree2.c @@ -292,7 +292,7 @@ H5D__bt2_dst_context(void *_ctx) /* Free array for chunk dimension sizes */ if(ctx->dim) - (void)H5FL_ARR_FREE(uint32_t, ctx->dim); + H5FL_ARR_FREE(uint32_t, ctx->dim); /* Release callback context */ ctx = H5FL_FREE(H5D_bt2_ctx_t, ctx); diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c index 5fda3c0..ee83564 100644 --- a/src/H5Dchunk.c +++ b/src/H5Dchunk.c @@ -1914,7 +1914,7 @@ H5D__create_chunk_file_map_hyper(H5D_chunk_map_t *fm, const H5D_io_info_t new_chunk_info->mspace_shared = FALSE; /* Copy the chunk's scaled coordinates */ - H5MM_memcpy(new_chunk_info->scaled, scaled, sizeof(hsize_t) * fm->f_ndims); + H5MM_memcpy(new_chunk_info->scaled, scaled, sizeof(hsize_t) * fm->f_ndims); new_chunk_info->scaled[fm->f_ndims] = 0; /* Insert the new chunk into the skip list */ @@ -2095,7 +2095,7 @@ H5D__create_chunk_mem_map_hyper(const H5D_chunk_map_t *fm) for(u = 0; u < fm->f_ndims; u++) { /* Compensate for the chunk offset */ H5_CHECK_OVERFLOW(coords[u], hsize_t, hssize_t); - chunk_adjust[u] = adjust[u] - (hssize_t)coords[u]; /*lint !e771 The adjust array will always be initialized */ + chunk_adjust[u] = adjust[u] - (hssize_t)coords[u]; } /* end for */ /* Adjust the selection */ @@ -2329,7 +2329,7 @@ H5D__chunk_mem_cb(void H5_ATTR_UNUSED *elem, const H5T_t H5_ATTR_UNUSED *type, u { H5D_chunk_map_t *fm = (H5D_chunk_map_t *)_fm; /* File<->memory chunk mapping info */ H5D_chunk_info_t *chunk_info; /* Chunk information for current chunk */ - hsize_t coords_in_mem[H5S_MAX_RANK]; /* Coordinates of element in memory */ + hsize_t coords_in_mem[H5S_MAX_RANK]; /* Coordinates of element in memory */ hsize_t chunk_index; /* Chunk index */ herr_t ret_value = SUCCEED; /* Return value */ @@ -3147,8 +3147,8 @@ done: /*------------------------------------------------------------------------- * Function: H5D__chunk_hash_val * - * Purpose: To calculate an index based on the dataset's scaled - * coordinates and sizes of the faster dimensions. + * Purpose: To calculate an index based on the dataset's scaled + * coordinates and sizes of the faster dimensions. * * Return: Hash value index * @@ -5991,7 +5991,7 @@ H5D__chunk_copy_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) if((udata->common.layout->flags & H5O_LAYOUT_CHUNK_DONT_FILTER_PARTIAL_BOUND_CHUNKS) && H5D__chunk_is_partial_edge_chunk(udata->dset_ndims, udata->common.layout->dim, chunk_rec->scaled, udata->dset_dims)) must_filter = FALSE; - } /* end if */ + } /* Check parameter for type conversion */ if(udata->do_convert) { @@ -6029,7 +6029,7 @@ H5D__chunk_copy_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) HDassert(!H5F_addr_defined(chunk_rec->chunk_addr)); H5MM_memcpy(buf, udata->chunk, nbytes); udata->chunk = NULL; - } /* end if */ + } else { H5D_rdcc_ent_t *ent = NULL; /* Cache entry */ unsigned idx; /* Index of chunk in cache, if present */ @@ -6062,13 +6062,13 @@ H5D__chunk_copy_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) H5_CHECKED_ASSIGN(nbytes, size_t, shared_fo->layout.u.chunk.size, uint32_t); H5MM_memcpy(buf, ent->chunk, nbytes); - } /* end if */ + } else { /* read chunk data from the source file */ if(H5F_block_read(udata->file_src, H5FD_MEM_DRAW, chunk_rec->chunk_addr, nbytes, buf) < 0) HGOTO_ERROR(H5E_IO, H5E_READERROR, H5_ITER_ERROR, "unable to read raw data chunk") - } /* end else */ - } /* end else */ + } + } /* Need to uncompress filtered variable-length & reference data elements that are not found in chunk cache */ if(must_filter && (is_vlen || fix_ref) && !udata->chunk_in_cache) { @@ -7201,7 +7201,7 @@ H5D__get_num_chunks(const H5D_t *dset, const H5S_t H5_ATTR_UNUSED *space, hsize_ if((dset->shared->layout.storage.u.chunk.ops->iterate)(&idx_info, H5D__get_num_chunks_cb, &num_chunks) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve allocated chunk information from index") *nchunks = num_chunks; - } /* end else */ + } done: FUNC_LEAVE_NOAPI_TAG(ret_value) @@ -7248,7 +7248,7 @@ H5D__get_chunk_info_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) /* Stop iterating */ ret_value = H5_ITER_STOP; - } /* end if */ + } /* Go to the next chunk */ else chunk_info->curr_idx++; diff --git a/src/H5Dearray.c b/src/H5Dearray.c index eaa8c46..a53489e 100644 --- a/src/H5Dearray.c +++ b/src/H5Dearray.c @@ -11,10 +11,10 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -/* Programmer: Quincey Koziol <koziol@hdfgroup.org> - * Tuesday, January 27, 2009 +/* Programmer: Quincey Koziol + * Tuesday, January 27, 2009 * - * Purpose: Extensible array indexed (chunked) I/O functions. The chunks + * Purpose: Extensible array indexed (chunked) I/O functions. The chunks * are given a single-dimensional index which is used as the * offset in an extensible array that maps a chunk coordinate to * a disk address. @@ -183,7 +183,7 @@ const H5EA_class_t H5EA_CLS_CHUNK[1]={{ H5D__earray_fill, /* Fill block of missing elements callback */ H5D__earray_encode, /* Element encoding callback */ H5D__earray_decode, /* Element decoding callback */ - H5D__earray_debug, /* Element debugging callback */ + H5D__earray_debug, /* Element debugging callback */ H5D__earray_crt_dbg_context, /* Create debugging context */ H5D__earray_dst_dbg_context /* Destroy debugging context */ }}; @@ -216,14 +216,14 @@ H5FL_DEFINE_STATIC(H5D_earray_ctx_ud_t); /*------------------------------------------------------------------------- - * Function: H5D__earray_crt_context + * Function: H5D__earray_crt_context * - * Purpose: Create context for callbacks + * Purpose: Create context for callbacks * - * Return: Success: non-NULL - * Failure: NULL + * Return: Success: non-NULL + * Failure: NULL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -265,14 +265,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_dst_context + * Function: H5D__earray_dst_context * - * Purpose: Destroy context for callbacks + * Purpose: Destroy context for callbacks * - * Return: Success: non-NULL - * Failure: NULL + * Return: Success: non-NULL + * Failure: NULL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -295,14 +295,14 @@ H5D__earray_dst_context(void *_ctx) /*------------------------------------------------------------------------- - * Function: H5D__earray_fill + * Function: H5D__earray_fill * - * Purpose: Fill "missing elements" in block of elements + * Purpose: Fill "missing elements" in block of elements * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, January 27, 2009 * *------------------------------------------------------------------------- @@ -325,14 +325,14 @@ H5D__earray_fill(void *nat_blk, size_t nelmts) /*------------------------------------------------------------------------- - * Function: H5D__earray_encode + * Function: H5D__earray_encode * - * Purpose: Encode an element from "native" to "raw" form + * Purpose: Encode an element from "native" to "raw" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, January 27, 2009 * *------------------------------------------------------------------------- @@ -369,14 +369,14 @@ H5D__earray_encode(void *raw, const void *_elmt, size_t nelmts, void *_ctx) /*------------------------------------------------------------------------- - * Function: H5D__earray_decode + * Function: H5D__earray_decode * - * Purpose: Decode an element from "raw" to "native" form + * Purpose: Decode an element from "raw" to "native" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -413,14 +413,14 @@ H5D__earray_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx) /*------------------------------------------------------------------------- - * Function: H5D__earray_debug + * Function: H5D__earray_debug * - * Purpose: Display an element for debugging + * Purpose: Display an element for debugging * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -447,14 +447,14 @@ H5D__earray_debug(FILE *stream, int indent, int fwidth, hsize_t idx, /*------------------------------------------------------------------------- - * Function: H5D__earray_filt_fill + * Function: H5D__earray_filt_fill * - * Purpose: Fill "missing elements" in block of elements + * Purpose: Fill "missing elements" in block of elements * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -478,14 +478,14 @@ H5D__earray_filt_fill(void *nat_blk, size_t nelmts) /*------------------------------------------------------------------------- - * Function: H5D__earray_filt_encode + * Function: H5D__earray_filt_encode * - * Purpose: Encode an element from "native" to "raw" form + * Purpose: Encode an element from "native" to "raw" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -525,14 +525,14 @@ H5D__earray_filt_encode(void *_raw, const void *_elmt, size_t nelmts, void *_ctx /*------------------------------------------------------------------------- - * Function: H5D__earray_filt_decode + * Function: H5D__earray_filt_decode * - * Purpose: Decode an element from "raw" to "native" form + * Purpose: Decode an element from "raw" to "native" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -571,14 +571,14 @@ H5D__earray_filt_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx /*------------------------------------------------------------------------- - * Function: H5D__earray_filt_debug + * Function: H5D__earray_filt_debug * - * Purpose: Display an element for debugging + * Purpose: Display an element for debugging * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -606,15 +606,15 @@ H5D__earray_filt_debug(FILE *stream, int indent, int fwidth, hsize_t idx, /*------------------------------------------------------------------------- - * Function: H5D__earray_crt_dbg_context + * Function: H5D__earray_crt_dbg_context * - * Purpose: Create context for debugging callback - * (get the layout message in the specified object header) + * Purpose: Create context for debugging callback + * (get the layout message in the specified object header) * - * Return: Success: non-NULL - * Failure: NULL + * Return: Success: non-NULL + * Failure: NULL * - * Programmer: Vailin Choi; July 2010 + * Programmer: Vailin Choi; July 2010 * *------------------------------------------------------------------------- */ @@ -680,15 +680,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_dst_dbg_context + * Function: H5D__earray_dst_dbg_context * - * Purpose: Destroy context for debugging callback - * (free the layout message from the specified object header) + * Purpose: Destroy context for debugging callback + * (free the layout message from the specified object header) * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi; July 2010 + * Programmer: Vailin Choi; July 2010 * *------------------------------------------------------------------------- */ @@ -710,16 +710,16 @@ H5D__earray_dst_dbg_context(void *_dbg_ctx) /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_depend + * Function: H5D__earray_idx_depend * - * Purpose: Create flush dependency between extensible array and dataset's + * Purpose: Create flush dependency between extensible array and dataset's * object header. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol - * Tuesday, June 2, 2009 + * Programmer: Quincey Koziol + * Tuesday, June 2, 2009 * *------------------------------------------------------------------------- */ @@ -772,20 +772,20 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_open + * Function: H5D__earray_idx_open * - * Purpose: Opens an existing extensible array. + * Purpose: Opens an existing extensible array. * - * Note: This information is passively initialized from each index + * Note: This information is passively initialized from each index * operation callback because those abstract chunk index operations * are designed to work with the v1 B-tree chunk indices also, * which don't require an 'open' for the data structure. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol - * Thursday, January 29, 2009 + * Programmer: Quincey Koziol + * Thursday, January 29, 2009 * *------------------------------------------------------------------------- */ @@ -814,7 +814,7 @@ H5D__earray_idx_open(const H5D_chk_idx_info_t *idx_info) /* Open the extensible array for the chunk index */ if(NULL == (idx_info->storage->u.earray.ea = H5EA_open(idx_info->f, idx_info->storage->idx_addr, &udata))) - HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open extensible array") + HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open extensible array") /* Check for SWMR writes to the file */ if(H5F_INTENT(idx_info->f) & H5F_ACC_SWMR_WRITE) @@ -827,13 +827,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_init + * Function: H5D__earray_idx_init * - * Purpose: Initialize the indexing information for a dataset. + * Purpose: Initialize the indexing information for a dataset. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Wednesday, May 27, 2009 * *------------------------------------------------------------------------- @@ -862,7 +862,7 @@ H5D__earray_idx_init(const H5D_chk_idx_info_t *idx_info, const H5S_t *space, /* Get the dim info for dataset */ if((sndims = H5S_get_simple_extent_dims(space, NULL, max_dims)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataspace dimensions") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataspace dimensions") H5_CHECKED_ASSIGN(ndims, unsigned, sndims, int); /* Find the rank of the unlimited dimension */ @@ -895,20 +895,20 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_create + * Function: H5D__earray_idx_create * - * Purpose: Creates a new indexed-storage extensible array and initializes + * Purpose: Creates a new indexed-storage extensible array and initializes * the layout struct with information about the storage. The - * struct should be immediately written to the object header. + * struct should be immediately written to the object header. * - * This function must be called before passing LAYOUT to any of - * the other indexed storage functions! + * This function must be called before passing LAYOUT to any of + * the other indexed storage functions! * - * Return: Non-negative on success (with the LAYOUT argument initialized - * and ready to write to an object header). Negative on failure. + * Return: Non-negative on success (with the LAYOUT argument initialized + * and ready to write to an object header). Negative on failure. * - * Programmer: Quincey Koziol - * Tuesday, January 27, 2009 + * Programmer: Quincey Koziol + * Tuesday, January 27, 2009 * *------------------------------------------------------------------------- */ @@ -965,11 +965,11 @@ H5D__earray_idx_create(const H5D_chk_idx_info_t *idx_info) /* Create the extensible array for the chunk index */ if(NULL == (idx_info->storage->u.earray.ea = H5EA_create(idx_info->f, &cparam, &udata))) - HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create extensible array") + HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create extensible array") /* Get the address of the extensible array in file */ if(H5EA_get_addr(idx_info->storage->u.earray.ea, &(idx_info->storage->idx_addr)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array address") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array address") /* Check for SWMR writes to the file */ if(H5F_INTENT(idx_info->f) & H5F_ACC_SWMR_WRITE) @@ -982,14 +982,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_is_space_alloc + * Function: H5D__earray_idx_is_space_alloc * - * Purpose: Query if space is allocated for index method + * Purpose: Query if space is allocated for index method * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Thursday, January 29, 2009 + * Programmer: Quincey Koziol + * Thursday, January 29, 2009 * *------------------------------------------------------------------------- */ @@ -1006,13 +1006,13 @@ H5D__earray_idx_is_space_alloc(const H5O_storage_chunk_t *storage) /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_insert + * Function: H5D__earray_idx_insert * - * Purpose: Insert chunk address into the indexing structure. + * Purpose: Insert chunk address into the indexing structure. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Vailin Choi; May 2014 + * Programmer: Vailin Choi; May 2014 * *------------------------------------------------------------------------- */ @@ -1021,7 +1021,7 @@ H5D__earray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata const H5D_t H5_ATTR_UNUSED *dset) { H5EA_t *ea; /* Pointer to extensible array structure */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1046,26 +1046,26 @@ H5D__earray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata ea = idx_info->storage->u.earray.ea; if(!H5F_addr_defined(udata->chunk_block.offset)) - HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "The chunk should have allocated already") + HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "The chunk should have allocated already") if(udata->chunk_idx != (udata->chunk_idx & 0xffffffff)) /* negative value */ - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "chunk index must be less than 2^32") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "chunk index must be less than 2^32") /* Check for filters on chunks */ if(idx_info->pline->nused > 0) { - H5D_earray_filt_elmt_t elmt; /* Extensible array element */ + H5D_earray_filt_elmt_t elmt; /* Extensible array element */ - elmt.addr = udata->chunk_block.offset; + elmt.addr = udata->chunk_block.offset; H5_CHECKED_ASSIGN(elmt.nbytes, uint32_t, udata->chunk_block.length, hsize_t); - elmt.filter_mask = udata->filter_mask; + elmt.filter_mask = udata->filter_mask; - /* Set the info for the chunk */ - if(H5EA_set(ea, udata->chunk_idx, &elmt) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk info") + /* Set the info for the chunk */ + if(H5EA_set(ea, udata->chunk_idx, &elmt) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk info") } /* end if */ else { - /* Set the address for the chunk */ - if(H5EA_set(ea, udata->chunk_idx, &udata->chunk_block.offset) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk address") + /* Set the address for the chunk */ + if(H5EA_set(ea, udata->chunk_idx, &udata->chunk_block.offset) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk address") } /* end else */ done: @@ -1074,15 +1074,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_get_addr + * Function: H5D__earray_idx_get_addr * - * Purpose: Get the file address of a chunk if file space has been - * assigned. Save the retrieved information in the udata - * supplied. + * Purpose: Get the file address of a chunk if file space has been + * assigned. Save the retrieved information in the udata + * supplied. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -1092,7 +1092,7 @@ H5D__earray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda { H5EA_t *ea; /* Pointer to extensible array structure */ hsize_t idx; /* Array index of chunk */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1118,13 +1118,13 @@ H5D__earray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda /* Check for unlimited dim. not being the slowest-changing dim. */ if(idx_info->layout->u.earray.unlim_dim > 0) { - hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */ + hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */ unsigned ndims = (idx_info->layout->ndims - 1); /* Number of dimensions */ - unsigned u; + unsigned u; - /* Compute coordinate offset from scaled offset */ - for(u = 0; u < ndims; u++) - swizzled_coords[u] = udata->common.scaled[u] * idx_info->layout->dim[u]; + /* Compute coordinate offset from scaled offset */ + for(u = 0; u < ndims; u++) + swizzled_coords[u] = udata->common.scaled[u] * idx_info->layout->dim[u]; H5VM_swizzle_coords(hsize_t, swizzled_coords, idx_info->layout->u.earray.unlim_dim); @@ -1157,12 +1157,12 @@ H5D__earray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get chunk address") /* Update the other (constant) information for the chunk */ - udata->chunk_block.length = idx_info->layout->size; + udata->chunk_block.length = idx_info->layout->size; udata->filter_mask = 0; } /* end else */ if(!H5F_addr_defined(udata->chunk_block.offset)) - udata->chunk_block.length = 0; + udata->chunk_block.length = 0; done: FUNC_LEAVE_NOAPI(ret_value) @@ -1170,14 +1170,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_resize + * Function: H5D__earray_idx_resize * - * Purpose: Calculate/setup the swizzled down chunk array, used for chunk + * Purpose: Calculate/setup the swizzled down chunk array, used for chunk * index calculations. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, July 23, 2009 * *------------------------------------------------------------------------- @@ -1224,13 +1224,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_iterate_cb + * Function: H5D__earray_idx_iterate_cb * - * Purpose: Callback routine for extensible array element iteration. + * Purpose: Callback routine for extensible array element iteration. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Vailin Choi; Feb 2015 + * Programmer: Vailin Choi; Feb 2015 * *------------------------------------------------------------------------- */ @@ -1257,8 +1257,8 @@ H5D__earray_idx_iterate_cb(hsize_t H5_ATTR_UNUSED idx, const void *_elmt, void * /* Make "generic chunk" callback */ if(H5F_addr_defined(udata->chunk_rec.chunk_addr)) - if((ret_value = (udata->cb)(&udata->chunk_rec, udata->udata)) < 0) - HERROR(H5E_DATASET, H5E_CALLBACK, "failure in generic chunk iterator callback"); + if((ret_value = (udata->cb)(&udata->chunk_rec, udata->udata)) < 0) + HERROR(H5E_DATASET, H5E_CALLBACK, "failure in generic chunk iterator callback"); /* Update coordinates of chunk in dataset */ ndims = udata->common.layout->ndims - 1; @@ -1283,18 +1283,18 @@ H5D__earray_idx_iterate_cb(hsize_t H5_ATTR_UNUSED idx, const void *_elmt, void * /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_iterate + * Function: H5D__earray_idx_iterate * - * Purpose: Iterate over the chunks in an index, making a callback + * Purpose: Iterate over the chunks in an index, making a callback * for each one. * - * Note: This implementation is slow, particularly for sparse + * Note: This implementation is slow, particularly for sparse * extensible arrays, replace it with call to H5EA_iterate() * when that's available. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -1332,27 +1332,27 @@ H5D__earray_idx_iterate(const H5D_chk_idx_info_t *idx_info, /* Get the extensible array statistics */ if(H5EA_get_stats(ea, &ea_stat) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics") if(ea_stat.stored.max_idx_set > 0) { H5D_earray_it_ud_t udata; /* User data for iteration callback */ - /* Initialize userdata */ - HDmemset(&udata, 0, sizeof udata); - udata.common.layout = idx_info->layout; - udata.common.storage = idx_info->storage; + /* Initialize userdata */ + HDmemset(&udata, 0, sizeof udata); + udata.common.layout = idx_info->layout; + udata.common.storage = idx_info->storage; HDmemset(&udata.chunk_rec, 0, sizeof(udata.chunk_rec)); udata.filtered = (idx_info->pline->nused > 0); if(!udata.filtered) { udata.chunk_rec.nbytes = idx_info->layout->size; udata.chunk_rec.filter_mask = 0; } /* end if */ - udata.cb = chunk_cb; - udata.udata = chunk_udata; + udata.cb = chunk_cb; + udata.udata = chunk_udata; /* Iterate over the extensible array elements */ - if((ret_value = H5EA_iterate(ea, H5D__earray_idx_iterate_cb, &udata)) < 0) - HERROR(H5E_DATASET, H5E_BADITER, "unable to iterate over fixed array chunk index"); + if((ret_value = H5EA_iterate(ea, H5D__earray_idx_iterate_cb, &udata)) < 0) + HERROR(H5E_DATASET, H5E_BADITER, "unable to iterate over fixed array chunk index"); } /* end if */ done: @@ -1361,13 +1361,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_remove + * Function: H5D__earray_idx_remove * - * Purpose: Remove chunk from index. + * Purpose: Remove chunk from index. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -1377,7 +1377,7 @@ H5D__earray_idx_remove(const H5D_chk_idx_info_t *idx_info, H5D_chunk_common_ud_t { H5EA_t *ea; /* Pointer to extensible array structure */ hsize_t idx; /* Array index of chunk */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1404,13 +1404,13 @@ H5D__earray_idx_remove(const H5D_chk_idx_info_t *idx_info, H5D_chunk_common_ud_t /* Check for unlimited dim. not being the slowest-changing dim. */ if(idx_info->layout->u.earray.unlim_dim > 0) { - hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */ + hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */ unsigned ndims = (idx_info->layout->ndims - 1); /* Number of dimensions */ - unsigned u; + unsigned u; - /* Compute coordinate offset from scaled offset */ - for(u = 0; u < ndims; u++) - swizzled_coords[u] = udata->scaled[u] * idx_info->layout->dim[u]; + /* Compute coordinate offset from scaled offset */ + for(u = 0; u < ndims; u++) + swizzled_coords[u] = udata->scaled[u] * idx_info->layout->dim[u]; H5VM_swizzle_coords(hsize_t, swizzled_coords, idx_info->layout->u.earray.unlim_dim); @@ -1472,14 +1472,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_delete_cb + * Function: H5D__earray_idx_delete_cb * - * Purpose: Delete space for chunk in file + * Purpose: Delete space for chunk in file * - * Return: Success: Non-negative - * Failure: negative + * Return: Success: Non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -1509,19 +1509,19 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_delete + * Function: H5D__earray_idx_delete * - * Purpose: Delete index and raw data storage for entire dataset + * Purpose: Delete index and raw data storage for entire dataset * (i.e. all chunks) * - * Note: This implementation is slow, particularly for sparse + * Note: This implementation is slow, particularly for sparse * extensible arrays, replace it with call to H5EA_iterate() * when that's available. * - * Return: Success: Non-negative - * Failure: negative + * Return: Success: Non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -1571,13 +1571,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_copy_setup + * Function: H5D__earray_idx_copy_setup * - * Purpose: Set up any necessary information for copying chunks + * Purpose: Set up any necessary information for copying chunks * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -1626,13 +1626,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_copy_shutdown + * Function: H5D__earray_idx_copy_shutdown * - * Purpose: Shutdown any information from copying chunks + * Purpose: Shutdown any information from copying chunks * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -1704,7 +1704,7 @@ H5D__earray_idx_size(const H5D_chk_idx_info_t *idx_info, hsize_t *index_size) /* Get the extensible array statistics */ if(H5EA_get_stats(ea, &ea_stat) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics") /* Set the size of the extensible array */ *index_size = ea_stat.computed.hdr_size + ea_stat.computed.index_blk_size @@ -1722,13 +1722,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_reset + * Function: H5D__earray_idx_reset * - * Purpose: Reset indexing information. + * Purpose: Reset indexing information. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -1743,7 +1743,7 @@ H5D__earray_idx_reset(H5O_storage_chunk_t *storage, hbool_t reset_addr) /* Reset index info */ if(reset_addr) { - storage->idx_addr = HADDR_UNDEF; + storage->idx_addr = HADDR_UNDEF; storage->u.earray.dset_ohdr_addr = HADDR_UNDEF; } /* end if */ storage->u.earray.ea = NULL; @@ -1753,13 +1753,13 @@ H5D__earray_idx_reset(H5O_storage_chunk_t *storage, hbool_t reset_addr) /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_dump + * Function: H5D__earray_idx_dump * - * Purpose: Dump indexing information to a stream. + * Purpose: Dump indexing information to a stream. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -1780,13 +1780,13 @@ H5D__earray_idx_dump(const H5O_storage_chunk_t *storage, FILE *stream) /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_dest + * Function: H5D__earray_idx_dest * - * Purpose: Release indexing information in memory. + * Purpose: Release indexing information in memory. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -1806,7 +1806,7 @@ H5D__earray_idx_dest(const H5D_chk_idx_info_t *idx_info) /* Check if the extensible array is open */ if(idx_info->storage->u.earray.ea) { - /* Patch the top level file pointer contained in ea if needed */ + /* Patch the top level file pointer contained in ea if needed */ if(H5EA_patch_file(idx_info->storage->u.earray.ea, idx_info->f) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't patch earray file pointer") diff --git a/src/H5Dfarray.c b/src/H5Dfarray.c index 4eedf04..a9202c2 100644 --- a/src/H5Dfarray.c +++ b/src/H5Dfarray.c @@ -261,14 +261,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__farray_dst_context + * Function: H5D__farray_dst_context * - * Purpose: Destroy context for callbacks + * Purpose: Destroy context for callbacks * - * Return: Success: non-NULL - * Failure: NULL + * Return: Success: non-NULL + * Failure: NULL * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -291,14 +291,14 @@ H5D__farray_dst_context(void *_ctx) /*------------------------------------------------------------------------- - * Function: H5D__farray_fill + * Function: H5D__farray_fill * - * Purpose: Fill "missing elements" in block of elements + * Purpose: Fill "missing elements" in block of elements * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -321,14 +321,14 @@ H5D__farray_fill(void *nat_blk, size_t nelmts) /*------------------------------------------------------------------------- - * Function: H5D__farray_encode + * Function: H5D__farray_encode * - * Purpose: Encode an element from "native" to "raw" form + * Purpose: Encode an element from "native" to "raw" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -365,14 +365,14 @@ H5D__farray_encode(void *raw, const void *_elmt, size_t nelmts, void *_ctx) /*------------------------------------------------------------------------- - * Function: H5D__farray_decode + * Function: H5D__farray_decode * - * Purpose: Decode an element from "raw" to "native" form + * Purpose: Decode an element from "raw" to "native" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -409,14 +409,14 @@ H5D__farray_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx) /*------------------------------------------------------------------------- - * Function: H5D__farray_debug + * Function: H5D__farray_debug * - * Purpose: Display an element for debugging + * Purpose: Display an element for debugging * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -443,23 +443,23 @@ H5D__farray_debug(FILE *stream, int indent, int fwidth, hsize_t idx, /*------------------------------------------------------------------------- - * Function: H5D__farray_crt_dbg_context + * Function: H5D__farray_crt_dbg_context * - * Purpose: Create context for debugging callback - * (get the layout message in the specified object header) + * Purpose: Create context for debugging callback + * (get the layout message in the specified object header) * - * Return: Success: non-NULL - * Failure: NULL + * Return: Success: non-NULL + * Failure: NULL * - * Programmer: Vailin Choi - * 5th August, 2009 + * Programmer: Vailin Choi + * 5th August, 2009 * *------------------------------------------------------------------------- */ static void * H5D__farray_crt_dbg_context(H5F_t *f, haddr_t obj_addr) { - H5D_farray_ctx_ud_t *dbg_ctx = NULL; /* Context for fixed array callback */ + H5D_farray_ctx_ud_t *dbg_ctx = NULL; /* Context for fixed array callback */ H5O_loc_t obj_loc; /* Pointer to an object's location */ hbool_t obj_opened = FALSE; /* Flag to indicate that the object header was opened */ H5O_layout_t layout; /* Layout message */ @@ -518,16 +518,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__farray_dst_dbg_context + * Function: H5D__farray_dst_dbg_context * - * Purpose: Destroy context for debugging callback - * (free the layout message from the specified object header) + * Purpose: Destroy context for debugging callback + * (free the layout message from the specified object header) * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol - * 24th September, 2009 + * Programmer: Quincey Koziol + * 24th September, 2009 * *------------------------------------------------------------------------- */ @@ -549,14 +549,14 @@ H5D__farray_dst_dbg_context(void *_dbg_ctx) /*------------------------------------------------------------------------- - * Function: H5D__farray_filt_fill + * Function: H5D__farray_filt_fill * - * Purpose: Fill "missing elements" in block of elements + * Purpose: Fill "missing elements" in block of elements * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -580,14 +580,14 @@ H5D__farray_filt_fill(void *nat_blk, size_t nelmts) /*------------------------------------------------------------------------- - * Function: H5D__farray_filt_encode + * Function: H5D__farray_filt_encode * - * Purpose: Encode an element from "native" to "raw" form + * Purpose: Encode an element from "native" to "raw" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -627,14 +627,14 @@ H5D__farray_filt_encode(void *_raw, const void *_elmt, size_t nelmts, void *_ctx /*------------------------------------------------------------------------- - * Function: H5D__farray_filt_decode + * Function: H5D__farray_filt_decode * - * Purpose: Decode an element from "raw" to "native" form + * Purpose: Decode an element from "raw" to "native" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -673,14 +673,14 @@ H5D__farray_filt_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx /*------------------------------------------------------------------------- - * Function: H5D__farray_filt_debug + * Function: H5D__farray_filt_debug * - * Purpose: Display an element for debugging + * Purpose: Display an element for debugging * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -708,15 +708,15 @@ H5D__farray_filt_debug(FILE *stream, int indent, int fwidth, hsize_t idx, /*------------------------------------------------------------------------- - * Function: H5D__farray_idx_depend + * Function: H5D__farray_idx_depend * - * Purpose: Create flush dependency between fixed array and dataset's + * Purpose: Create flush dependency between fixed array and dataset's * object header. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -798,15 +798,15 @@ H5D__farray_idx_init(const H5D_chk_idx_info_t *idx_info, const H5S_t H5_ATTR_UNU /*------------------------------------------------------------------------- - * Function: H5D__farray_idx_open + * Function: H5D__farray_idx_open * - * Purpose: Opens an existing fixed array and initializes + * Purpose: Opens an existing fixed array and initializes * the layout struct with information about the storage. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -849,19 +849,19 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__farray_idx_create + * Function: H5D__farray_idx_create * - * Purpose: Creates a new indexed-storage fixed array and initializes + * Purpose: Creates a new indexed-storage fixed array and initializes * the layout struct with information about the storage. The - * struct should be immediately written to the object header. + * struct should be immediately written to the object header. * - * This function must be called before passing LAYOUT to any of - * the other indexed storage functions! + * This function must be called before passing LAYOUT to any of + * the other indexed storage functions! * - * Return: Non-negative on success (with the LAYOUT argument initialized - * and ready to write to an object header). Negative on failure. + * Return: Non-negative on success (with the LAYOUT argument initialized + * and ready to write to an object header). Negative on failure. * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -869,9 +869,9 @@ done: static herr_t H5D__farray_idx_create(const H5D_chk_idx_info_t *idx_info) { - H5FA_create_t cparam; /* Fixed array creation parameters */ + H5FA_create_t cparam; /* Fixed array creation parameters */ H5D_farray_ctx_ud_t udata; /* User data for fixed array create call */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -930,13 +930,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__farray_idx_is_space_alloc + * Function: H5D__farray_idx_is_space_alloc * - * Purpose: Query if space is allocated for index method + * Purpose: Query if space is allocated for index method * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -954,13 +954,13 @@ H5D__farray_idx_is_space_alloc(const H5O_storage_chunk_t *storage) /*------------------------------------------------------------------------- - * Function: H5D__farray_idx_insert + * Function: H5D__farray_idx_insert * - * Purpose: Insert chunk address into the indexing structure. + * Purpose: Insert chunk address into the indexing structure. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Vailin Choi; 5 May 2014 + * Programmer: Vailin Choi; 5 May 2014 * *------------------------------------------------------------------------- */ @@ -968,8 +968,8 @@ static herr_t H5D__farray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata, const H5D_t H5_ATTR_UNUSED *dset) { - H5FA_t *fa; /* Pointer to fixed array structure */ - herr_t ret_value = SUCCEED; /* Return value */ + H5FA_t *fa; /* Pointer to fixed array structure */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC diff --git a/src/H5Dio.c b/src/H5Dio.c index 84b7e7a..a972e00 100644 --- a/src/H5Dio.c +++ b/src/H5Dio.c @@ -149,7 +149,7 @@ done: * The PLIST_ID can be the constant H5P_DEFAULT in which * case the default data transfer properties are used. * - * Return: SUCCEED/FAIL + * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Thursday, December 4, 1997 @@ -271,7 +271,7 @@ done: * The PLIST_ID can be the constant H5P_DEFAULT in which * case the default data transfer properties are used. * - * Return: SUCCEED/FAIL + * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Thursday, December 4, 1997 @@ -280,7 +280,7 @@ done: */ herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, - hid_t file_space_id, hid_t dxpl_id, const void *buf) + hid_t file_space_id, hid_t dxpl_id, const void *buf) { H5VL_object_t *vol_obj = NULL; herr_t ret_value = SUCCEED; /* Return value */ @@ -410,7 +410,7 @@ H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, /* projected mem space must be discarded at the */ /* end of the function to avoid a memory leak. */ H5D_storage_t store; /* union of EFL and chunk pointer in file space */ - hsize_t nelmts; /* total number of elmts */ + hsize_t nelmts; /* total number of elmts */ hbool_t io_op_init = FALSE; /* Whether the I/O op has been initialized */ char fake_char; /* Temporary variable for NULL buffer pointers */ herr_t ret_value = SUCCEED; /* Return value */ @@ -621,7 +621,7 @@ H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, /* projected mem space must be discarded at the */ /* end of the function to avoid a memory leak. */ H5D_storage_t store; /* union of EFL and chunk pointer in file space */ - hsize_t nelmts; /* total number of elmts */ + hsize_t nelmts; /* total number of elmts */ hbool_t io_op_init = FALSE; /* Whether the I/O op has been initialized */ char fake_char; /* Temporary variable for NULL buffer pointers */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1153,10 +1153,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset, /* Append each of the "reason for breaking collective I/O" error messages to the * local and global no collective cause strings */ - for (cause = 1, idx = 0; - (cause < H5D_MPIO_NO_COLLECTIVE_MAX_CAUSE) && - (idx < cause_strings_len); - cause <<= 1, idx++) { + for (cause = 1, idx = 0; (cause < H5D_MPIO_NO_COLLECTIVE_MAX_CAUSE) && (idx < cause_strings_len); cause <<= 1, idx++) { size_t cause_strlen = HDstrlen(cause_strings[idx]); if (cause & local_no_collective_cause) { @@ -1166,8 +1163,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset, if(local_error_message_previously_written) HDstrncat(local_no_collective_cause_string, "; ", 2); - HDstrncat(local_no_collective_cause_string, - cause_strings[idx], cause_strlen); + HDstrncat(local_no_collective_cause_string, cause_strings[idx], cause_strlen); local_error_message_previously_written = TRUE; } /* end if */ @@ -1179,8 +1175,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset, if(global_error_message_previously_written) HDstrncat(global_no_collective_cause_string, "; ", 2); - HDstrncat(global_no_collective_cause_string, - cause_strings[idx], cause_strlen); + HDstrncat(global_no_collective_cause_string, cause_strings[idx], cause_strlen); global_error_message_previously_written = TRUE; } /* end if */ diff --git a/src/H5Dlayout.c b/src/H5Dlayout.c index e257140..679a33b 100644 --- a/src/H5Dlayout.c +++ b/src/H5Dlayout.c @@ -66,7 +66,7 @@ const unsigned H5O_layout_ver_bounds[] = { - + /*------------------------------------------------------------------------- * Function: H5D__layout_set_io_ops * @@ -153,7 +153,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__layout_set_io_ops() */ - + /*------------------------------------------------------------------------- * Function: H5D__layout_meta_size * @@ -284,7 +284,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__layout_meta_size() */ - + /*------------------------------------------------------------------------- * Function: H5D__layout_set_version * @@ -322,7 +322,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__layout_set_version() */ - + /*------------------------------------------------------------------------- * Function: H5D__layout_set_latest_indexing * @@ -362,7 +362,7 @@ H5D__layout_set_latest_indexing(H5O_layout_t *layout, const H5S_t *space, if(ndims > 0) { hsize_t max_dims[H5O_LAYOUT_NDIMS]; /* Maximum dimension sizes */ hsize_t cur_dims[H5O_LAYOUT_NDIMS]; /* Current dimension sizes */ - unsigned unlim_count = 0; /* Count of unlimited max. dimensions */ + unsigned unlim_count = 0; /* Count of unlimited max. dimensions */ hbool_t single = TRUE; /* Fulfill single chunk indexing */ unsigned u; /* Local index variable */ @@ -446,7 +446,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__layout_set_latest_indexing() */ - + /*------------------------------------------------------------------------- * Function: H5D__layout_oh_create * @@ -589,17 +589,17 @@ done: FUNC_LEAVE_NOAPI_TAG(ret_value) } /* end H5D__layout_oh_create() */ - + /*------------------------------------------------------------------------- * Function: H5D__layout_oh_read * - * Purpose: Read layout/pline/efl information for dataset + * Purpose: Read layout/pline/efl information for dataset * - * Return: Success: SUCCEED - * Failure: FAIL + * Return: Success: SUCCEED + * Failure: FAIL * - * Programmer: Quincey Koziol - * Monday, July 27, 2009 + * Programmer: Quincey Koziol + * Monday, July 27, 2009 * *------------------------------------------------------------------------- */ @@ -683,17 +683,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__layout_oh_read() */ - + /*------------------------------------------------------------------------- * Function: H5D__layout_oh_write * - * Purpose: Write layout information for dataset + * Purpose: Write layout information for dataset * - * Return: Success: SUCCEED - * Failure: FAIL + * Return: Success: SUCCEED + * Failure: FAIL * - * Programmer: Quincey Koziol - * Monday, July 27, 2009 + * Programmer: Quincey Koziol + * Monday, July 27, 2009 * *------------------------------------------------------------------------- */ diff --git a/src/H5Dmodule.h b/src/H5Dmodule.h index b259b69..27ccf54 100644 --- a/src/H5Dmodule.h +++ b/src/H5Dmodule.h @@ -11,7 +11,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Programmer: Quincey Koziol * Saturday, September 12, 2015 * * Purpose: This file contains declarations which define macros for the diff --git a/src/H5Dmpio.c b/src/H5Dmpio.c index 492902b..cfed02e 100644 --- a/src/H5Dmpio.c +++ b/src/H5Dmpio.c @@ -3272,7 +3272,7 @@ H5D__filtered_collective_chunk_entry_io(H5D_filtered_collective_io_info_t *chunk if(H5S_close(dataspace) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTFREE, FAIL, "can't close dataspace") dataspace = NULL; - } /* end if */ + } H5MM_free(chunk_entry->async_info.receive_buffer_array[i]); } /* end for */ diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h index c46e38b6..37a27d3 100644 --- a/src/H5Dpkg.h +++ b/src/H5Dpkg.h @@ -12,7 +12,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> + * Programmer: Quincey Koziol * Monday, April 14, 2003 * * Purpose: This file contains declarations which are visible only within diff --git a/src/H5Dselect.c b/src/H5Dselect.c index c5469c2..5a5c491 100644 --- a/src/H5Dselect.c +++ b/src/H5Dselect.c @@ -11,7 +11,7 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -/* Programmer: Quincey Koziol <koziol@ncsa.uiuc.ued> +/* Programmer: Quincey Koziol * Thursday, September 30, 2004 * * Purpose: Dataspace I/O functions. diff --git a/src/H5EAdbg.c b/src/H5EAdbg.c index 3d6c2ed..e5b68be 100644 --- a/src/H5EAdbg.c +++ b/src/H5EAdbg.c @@ -13,11 +13,11 @@ /*------------------------------------------------------------------------- * - * Created: H5EAdbg.c - * Sep 11 2008 - * Quincey Koziol <koziol@hdfgroup.org> + * Created: H5EAdbg.c + * Sep 11 2008 + * Quincey Koziol * - * Purpose: Dump debugging information about an extensible array. + * Purpose: Dump debugging information about an extensible array. * *------------------------------------------------------------------------- */ @@ -37,9 +37,9 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5EApkg.h" /* Extensible Arrays */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5EApkg.h" /* Extensible Arrays */ /****************/ @@ -79,15 +79,14 @@ /*------------------------------------------------------------------------- - * Function: H5EA__hdr_debug + * Function: H5EA__hdr_debug * - * Purpose: Prints debugging info about a extensible array header. + * Purpose: Prints debugging info about a extensible array header. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Sep 11 2008 + * Programmer: Quincey Koziol + * Sep 11 2008 * *------------------------------------------------------------------------- */ @@ -97,7 +96,7 @@ H5EA__hdr_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, const H5EA_class_t *cls, haddr_t obj_addr)) /* Local variables */ - H5EA_hdr_t *hdr = NULL; /* Shared extensible array header */ + H5EA_hdr_t *hdr = NULL; /* Shared extensible array header */ void *dbg_ctx = NULL; /* Extensible array debugging context */ /* Check arguments */ @@ -117,73 +116,72 @@ H5EA__hdr_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, /* Load the extensible array header */ if(NULL == (hdr = H5EA__hdr_protect(f, addr, dbg_ctx, H5AC__READ_ONLY_FLAG))) - H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header") + H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header") /* Print opening message */ HDfprintf(stream, "%*sExtensible Array Header...\n", indent, ""); /* Print the values */ HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth, - "Array class ID:", hdr->cparam.cls->name); + "Array class ID:", hdr->cparam.cls->name); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "Header size:", - hdr->size); + "Header size:", + hdr->size); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Raw Element Size:", - (unsigned)hdr->cparam.raw_elmt_size); + "Raw Element Size:", + (unsigned)hdr->cparam.raw_elmt_size); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "Native Element Size (on this platform):", - hdr->cparam.cls->nat_elmt_size); + "Native Element Size (on this platform):", + hdr->cparam.cls->nat_elmt_size); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Log2(Max. # of elements in array):", - (unsigned)hdr->cparam.max_nelmts_bits); + "Log2(Max. # of elements in array):", + (unsigned)hdr->cparam.max_nelmts_bits); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "# of elements in index block:", - (unsigned)hdr->cparam.idx_blk_elmts); + "# of elements in index block:", + (unsigned)hdr->cparam.idx_blk_elmts); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Min. # of elements per data block:", - (unsigned)hdr->cparam.data_blk_min_elmts); + "Min. # of elements per data block:", + (unsigned)hdr->cparam.data_blk_min_elmts); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Min. # of data block pointers for a super block:", - (unsigned)hdr->cparam.sup_blk_min_data_ptrs); + "Min. # of data block pointers for a super block:", + (unsigned)hdr->cparam.sup_blk_min_data_ptrs); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Log2(Max. # of elements in data block page):", - (unsigned)hdr->cparam.max_dblk_page_nelmts_bits); + "Log2(Max. # of elements in data block page):", + (unsigned)hdr->cparam.max_dblk_page_nelmts_bits); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Highest element index stored (+1):", - hdr->stats.stored.max_idx_set); + "Highest element index stored (+1):", + hdr->stats.stored.max_idx_set); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Number of super blocks created:", - hdr->stats.stored.nsuper_blks); + "Number of super blocks created:", + hdr->stats.stored.nsuper_blks); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Number of data blocks created:", - hdr->stats.stored.ndata_blks); + "Number of data blocks created:", + hdr->stats.stored.ndata_blks); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Number of elements 'realized':", - hdr->stats.stored.nelmts); + "Number of elements 'realized':", + hdr->stats.stored.nelmts); HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth, - "Index Block Address:", - hdr->idx_blk_addr); + "Index Block Address:", + hdr->idx_blk_addr); CATCH if(dbg_ctx && cls->dst_dbg_ctx(dbg_ctx) < 0) H5E_THROW(H5E_CANTRELEASE, "unable to release extensible array debugging context") if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0) - H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") + H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") END_FUNC(PKG) /* end H5EA__hdr_debug() */ /*------------------------------------------------------------------------- - * Function: H5EA__iblock_debug + * Function: H5EA__iblock_debug * - * Purpose: Prints debugging info about a extensible array index block. + * Purpose: Prints debugging info about a extensible array index block. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Sep 11 2008 + * Programmer: Quincey Koziol + * Sep 11 2008 * *------------------------------------------------------------------------- */ @@ -215,7 +213,7 @@ H5EA__iblock_debug(H5F_t *f, haddr_t H5_ATTR_UNUSED addr, FILE *stream, int inde /* Load the extensible array header */ if(NULL == (hdr = H5EA__hdr_protect(f, hdr_addr, dbg_ctx, H5AC__READ_ONLY_FLAG))) - H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header") + H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header") /* Sanity check */ HDassert(H5F_addr_eq(hdr->idx_blk_addr, addr)); @@ -229,16 +227,16 @@ H5EA__iblock_debug(H5F_t *f, haddr_t H5_ATTR_UNUSED addr, FILE *stream, int inde /* Print the values */ HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth, - "Array class ID:", hdr->cparam.cls->name); + "Array class ID:", hdr->cparam.cls->name); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "Index Block size:", - iblock->size); + "Index Block size:", + iblock->size); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "# of data block addresses in index block:", - iblock->ndblk_addrs); + "# of data block addresses in index block:", + iblock->ndblk_addrs); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "# of super block addresses in index block:", - iblock->nsblk_addrs); + "# of super block addresses in index block:", + iblock->nsblk_addrs); /* Check if there are any elements in index block */ if(hdr->cparam.idx_blk_elmts > 0) { @@ -293,21 +291,20 @@ CATCH if(iblock && H5EA__iblock_unprotect(iblock, H5AC__NO_FLAGS_SET) < 0) H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array index block") if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0) - H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") + H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") END_FUNC(PKG) /* end H5EA__iblock_debug() */ /*------------------------------------------------------------------------- - * Function: H5EA__sblock_debug + * Function: H5EA__sblock_debug * - * Purpose: Prints debugging info about a extensible array super block. + * Purpose: Prints debugging info about a extensible array super block. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Sep 30 2008 + * Programmer: Quincey Koziol + * Sep 30 2008 * *------------------------------------------------------------------------- */ @@ -339,7 +336,7 @@ H5EA__sblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, /* Load the extensible array header */ if(NULL == (hdr = H5EA__hdr_protect(f, hdr_addr, dbg_ctx, H5AC__READ_ONLY_FLAG))) - H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header") + H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header") /* Protect super block */ /* (Note: setting parent of super block to 'hdr' for this operation should be OK -QAK) */ @@ -351,16 +348,16 @@ H5EA__sblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, /* Print the values */ HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth, - "Array class ID:", hdr->cparam.cls->name); + "Array class ID:", hdr->cparam.cls->name); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "Super Block size:", - sblock->size); + "Super Block size:", + sblock->size); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "# of data block addresses in super block:", - sblock->ndblks); + "# of data block addresses in super block:", + sblock->ndblks); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "# of elements in data blocks from this super block:", - sblock->dblk_nelmts); + "# of elements in data blocks from this super block:", + sblock->dblk_nelmts); /* Check if there are any data block addresses in super block */ if(sblock->ndblks > 0) { @@ -384,21 +381,20 @@ CATCH if(sblock && H5EA__sblock_unprotect(sblock, H5AC__NO_FLAGS_SET) < 0) H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array super block") if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0) - H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") + H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") END_FUNC(PKG) /* end H5EA__sblock_debug() */ /*------------------------------------------------------------------------- - * Function: H5EA__dblock_debug + * Function: H5EA__dblock_debug * - * Purpose: Prints debugging info about a extensible array data block. + * Purpose: Prints debugging info about a extensible array data block. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Sep 22 2008 + * Programmer: Quincey Koziol + * Sep 22 2008 * *------------------------------------------------------------------------- */ @@ -432,7 +428,7 @@ H5EA__dblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, /* Load the extensible array header */ if(NULL == (hdr = H5EA__hdr_protect(f, hdr_addr, dbg_ctx, H5AC__READ_ONLY_FLAG))) - H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header") + H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header") /* Protect data block */ /* (Note: setting parent of data block to 'hdr' for this operation should be OK -QAK) */ @@ -444,10 +440,10 @@ H5EA__dblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, /* Print the values */ HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth, - "Array class ID:", hdr->cparam.cls->name); + "Array class ID:", hdr->cparam.cls->name); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "Data Block size:", - dblock->size); + "Data Block size:", + dblock->size); /* Print the elements in the index block */ @@ -466,7 +462,7 @@ CATCH if(dblock && H5EA__dblock_unprotect(dblock, H5AC__NO_FLAGS_SET) < 0) H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array data block") if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0) - H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") + H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") END_FUNC(PKG) /* end H5EA__dblock_debug() */ diff --git a/src/H5EAmodule.h b/src/H5EAmodule.h index d3e06b7..c3a4c7c 100644 --- a/src/H5EAmodule.h +++ b/src/H5EAmodule.h @@ -11,7 +11,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Programmer: Quincey Koziol * Saturday, September 12, 2015 * * Purpose: This file contains declarations which define macros for the diff --git a/src/H5EApkg.h b/src/H5EApkg.h index bb3f39c..b70231d 100644 --- a/src/H5EApkg.h +++ b/src/H5EApkg.h @@ -12,7 +12,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Programmer: Quincey Koziol * Tuesday, June 17, 2008 * * Purpose: This file contains declarations which are visible only diff --git a/src/H5EAprivate.h b/src/H5EAprivate.h index 1195256..af0ef3a 100644 --- a/src/H5EAprivate.h +++ b/src/H5EAprivate.h @@ -15,7 +15,7 @@ * * Created: H5EAprivate.h * Jun 17 2008 - * Quincey Koziol <koziol@hdfgroup.org> + * Quincey Koziol * * Purpose: Private header for library accessible extensible * array routines. diff --git a/src/H5EAsblock.c b/src/H5EAsblock.c index b4671f8..fb7c458 100644 --- a/src/H5EAsblock.c +++ b/src/H5EAsblock.c @@ -15,7 +15,7 @@ * * Created: H5EAsblock.c * Sep 30 2008 - * Quincey Koziol <koziol@hdfgroup.org> + * Quincey Koziol * * Purpose: Super block routines for extensible arrays. * @@ -98,7 +98,6 @@ H5FL_BLK_DEFINE(page_init); * Return: Non-NULL pointer to super block on success/NULL on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 30 2008 * *------------------------------------------------------------------------- @@ -179,7 +178,6 @@ END_FUNC(PKG) /* end H5EA__sblock_alloc() */ * Return: Valid file address on success/HADDR_UNDEF on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 30 2008 * *------------------------------------------------------------------------- @@ -267,7 +265,6 @@ END_FUNC(PKG) /* end H5EA__sblock_create() */ * Return: Non-NULL pointer to data block on success/NULL on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 30 2008 * *------------------------------------------------------------------------- @@ -328,7 +325,6 @@ END_FUNC(PKG) /* end H5EA__sblock_protect() */ * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 30 2008 * *------------------------------------------------------------------------- @@ -359,7 +355,6 @@ END_FUNC(PKG) /* end H5EA__sblock_unprotect() */ * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 30 2008 * *------------------------------------------------------------------------- @@ -408,7 +403,6 @@ END_FUNC(PKG) /* end H5EA__sblock_delete() */ * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 30 2008 * *------------------------------------------------------------------------- diff --git a/src/H5Eint.c b/src/H5Eint.c index fe72449..2371a5f 100644 --- a/src/H5Eint.c +++ b/src/H5Eint.c @@ -33,7 +33,6 @@ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ -#include "H5CXprivate.h" /* API Contexts */ #include "H5Epkg.h" /* Error handling */ #include "H5Iprivate.h" /* IDs */ #include "H5MMprivate.h" /* Memory management */ @@ -576,7 +575,7 @@ H5E__walk(const H5E_t *estack, H5E_direction_t direction, const H5E_walk_op_t *o ret_value = (op->u.func2)((unsigned)(estack->nused - (size_t)(i + 1)), estack->slot + i, client_data); } /* end else */ - if(ret_value < 0) + if(ret_value < 0) HERROR(H5E_ERROR, H5E_CANTLIST, "can't walk error stack"); } /* end if */ } /* end else */ diff --git a/src/H5Eprivate.h b/src/H5Eprivate.h index 19ab729..130a8fd 100644 --- a/src/H5Eprivate.h +++ b/src/H5Eprivate.h @@ -180,7 +180,7 @@ extern int H5E_mpi_error_str_len; /* Library-private functions defined in H5E package */ H5_DLL herr_t H5E_init(void); H5_DLL herr_t H5E_printf_stack(H5E_t *estack, const char *file, const char *func, - unsigned line, hid_t cls_id, hid_t maj_id, hid_t min_id, const char *fmt, ...)H5_ATTR_FORMAT(printf, 8, 9); + unsigned line, hid_t cls_id, hid_t maj_id, hid_t min_id, const char *fmt, ...) H5_ATTR_FORMAT(printf, 8, 9); H5_DLL herr_t H5E_clear_stack(H5E_t *estack); H5_DLL herr_t H5E_dump_api_stack(hbool_t is_api); @@ -549,8 +549,8 @@ done: * Purpose: Returns a pointer to the file handle of the low-level file * driver. * - * Return: SUCCEED/FAIL - * + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -637,9 +637,7 @@ done: * the list of file creation and file access properties. * * Return: Success: A file ID - * * Failure: H5I_INVALID_HID - * *------------------------------------------------------------------------- */ hid_t @@ -739,9 +737,7 @@ done: * See Also: H5Fpublic.h for a list of possible values for FLAGS. * * Return: Success: A file ID - * * Failure: H5I_INVALID_HID - * *------------------------------------------------------------------------- */ hid_t @@ -820,7 +816,8 @@ done: * not remove them from the cache. The OBJECT_ID can be a file, * dataset, group, attribute, or named data type. * - * Return: Non-negative on success/Negative on failure + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1008,7 +1005,8 @@ done: * Purpose: Public API to retrieve the file's 'intent' flags passed * during H5Fopen() * - * Return: Non-negative on success/negative on failure + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1079,9 +1077,7 @@ done: * Purpose: Retrieves the amount of free space in the file. * * Return: Success: Amount of free space for type - * * Failure: -1 - * *------------------------------------------------------------------------- */ hssize_t @@ -1175,9 +1171,7 @@ done: * this now. * * Return: Success: Bytes copied / number of bytes needed - * * Failure: -1 - * *------------------------------------------------------------------------- */ ssize_t @@ -1212,8 +1206,8 @@ done: * filled in by the caller. This allows us to adapt for * obsolete versions of the structure. * - * Return: SUCCEED/FAIL - * + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1249,8 +1243,8 @@ done: * configuration, using the contents of the instance of * H5AC_cache_config_t pointed to by config_ptr. * - * Return: SUCCEED/FAIL - * + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1283,8 +1277,8 @@ done: * the hit rate statistics were reset either manually or * automatically. * - * Return: SUCCEED/FAIL - * + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1320,8 +1314,8 @@ done: * the ptr parameters are NULL, the associated datum is * not returned. * - * Return: SUCCEED/FAIL - * + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1360,8 +1354,8 @@ done: * you are controlling cache size from your program instead * of using our cache size control code. * - * Return: SUCCEED/FAIL - * + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1402,9 +1396,7 @@ done: * not the actual name after resolving symlinks, etc. * * Return: Success: The length of the file name - * * Failure: -1 - * *------------------------------------------------------------------------- */ ssize_t @@ -1444,8 +1436,8 @@ done: * in the SOHM table if there is one. * 3. The amount of free space tracked in the file. * - * Return: SUCCEED/FAIL - * + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1486,8 +1478,8 @@ done: * Purpose: To retrieve the collection of read retries for metadata * items with checksum. * - * Return: SUCCEED/FAIL - * + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1525,9 +1517,7 @@ done: * sections. * * Return: Success: The total # of free space sections - * * Failure: -1 - * *------------------------------------------------------------------------- */ ssize_t @@ -1562,8 +1552,8 @@ done: * provided file, potentially closing any cached files * unless they are held open from somewhere\ else. * - * Return: SUCCEED/FAIL - * + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1618,8 +1608,8 @@ done: * set up flush dependency/proxy even for file opened without * SWMR to resolve issues with opened objects. * - * Return: Non-negative on success/negative on failure - * + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1654,7 +1644,8 @@ done: * Purpose: Start metadata cache logging operations for a file. * - Logging must have been set up via the fapl. * - * Return: Non-negative on success/Negative on errors + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1686,7 +1677,8 @@ done: * - Does not close the log file. * - Logging must have been set up via the fapl. * - * Return: Non-negative on success/Negative on errors + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1718,7 +1710,8 @@ done: * set up via the fapl. is_currently_logging determines if * log messages are being recorded at this time. * - * Return: Non-negative on success/Negative on errors + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1752,7 +1745,8 @@ done: * H5Fset_latest_format() starting release 1.10.2. * See explanation for H5Fset_latest_format() in H5Fdeprec.c. * - * Return: Non-negative on success/Negative on failure + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1788,7 +1782,8 @@ done: * downgrade persistent file space to non-persistent * for 1.8 library. * - * Return: Non-negative on success/Negative on failure + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1822,7 +1817,8 @@ done: * * Purpose: Resets statistics for the page buffer layer. * - * Return: Non-negative on success/Negative on failure + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1852,7 +1848,8 @@ done: * * Purpose: Retrieves statistics for the page buffer layer. * - * Return: Non-negative on success/Negative on failure + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1890,7 +1887,8 @@ done: * image_len: --size of the on disk metadata cache image * --zero if no cache image * - * Return: Non-negative on success/Negative on failure + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1918,14 +1916,12 @@ done: /*------------------------------------------------------------------------- * Function: H5Fget_eoa * - * Purpose: Returns the address of the first byte after the last + * Purpose: Gets the address of the first byte after the last * allocated memory in the file. * (See H5FDget_eoa() in H5FD.c) * - * Return: Success: First byte after allocated memory. - * Failure: HADDR_UNDEF - * - * Non-negative on success/Negative on failure + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1958,7 +1954,8 @@ done: * * Purpose: Set the EOA for the file to the maximum of (EOA, EOF) + increment * - * Return: Non-negative on success/Negative on errors + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1984,24 +1981,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5Fget_dset_no_attrs_hint - * - * Purpose: - * - * Get the file-level setting to create minimized dataset object headers. - * Result is stored at pointer `minimize`. - * - * Return: + * Function: H5Fget_dset_no_attrs_hint * - * Success: SUCCEED (0) (non-negative value) - * Failure: FAIL (-1) (negative value) + * Purpose: Get the file-level setting to create minimized dataset object headers. + * Result is stored at pointer `minimize`. * - * Programmer: - * - * Jacob Smith - * 15 August 2018 - * - * Changes: None. + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -2029,23 +2015,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5Fset_dset_no_attrs_hint - * - * Purpose: - * - * Set the file-level setting to create minimized dataset object headers. + * Function: H5Fset_dset_no_attrs_hint * - * Return: + * Purpose: Set the file-level setting to create minimized dataset object + * headers. * - * Success: SUCCEED (0) (non-negative value) - * Failure: FAIL (-1) (negative value) - * - * Programmer: - * - * Jacob Smith - * 15 August 2018 - * - * Changes: None. + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1436,7 +1436,7 @@ done: * constant H5P_DEFAULT). The bytes to be written come from the * buffer BUF. * - * Return: SNon-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * *------------------------------------------------------------------------- */ diff --git a/src/H5FDlog.c b/src/H5FDlog.c index f649bc4..78b7742 100644 --- a/src/H5FDlog.c +++ b/src/H5FDlog.c @@ -487,11 +487,8 @@ H5FD_log_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr) #ifdef H5_HAVE_WIN32_API struct _BY_HANDLE_FILE_INFORMATION fileinfo; #endif -#ifdef H5_HAVE_GETTIMEOFDAY - struct timeval timeval_start; - struct timeval open_timeval_diff; - struct timeval stat_timeval_diff; -#endif /* H5_HAVE_GETTIMEOFDAY */ + H5_timer_t open_timer; /* Timer for open() call */ + H5_timer_t stat_timer; /* Timer for stat() call */ h5_stat_t sb; H5FD_t *ret_value = NULL; /* Return value */ @@ -523,54 +520,36 @@ H5FD_log_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr) if(NULL == (fa = (const H5FD_log_fapl_t *)H5P_peek_driver_info(plist))) HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, NULL, "bad VFL driver info") -#ifdef H5_HAVE_GETTIMEOFDAY - if(fa->flags & H5FD_LOG_TIME_OPEN) - HDgettimeofday(&timeval_start, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ + /* Start timer for open() call */ + if(fa->flags & H5FD_LOG_TIME_OPEN) { + H5_timer_init(&open_timer); + H5_timer_start(&open_timer); + } /* end if */ + /* Open the file */ if((fd = HDopen(name, o_flags, H5_POSIX_CREATE_MODE_RW)) < 0) { int myerrno = errno; HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to open file: name = '%s', errno = %d, error message = '%s', flags = %x, o_flags = %x", name, myerrno, HDstrerror(myerrno), flags, (unsigned)o_flags); } /* end if */ -#ifdef H5_HAVE_GETTIMEOFDAY - if(fa->flags & H5FD_LOG_TIME_OPEN) { - struct timeval timeval_stop; - HDgettimeofday(&timeval_stop, NULL); + /* Stop timer for open() call */ + if(fa->flags & H5FD_LOG_TIME_OPEN) + H5_timer_stop(&open_timer); - /* Calculate the elapsed gettimeofday time */ - open_timeval_diff.tv_usec = timeval_stop.tv_usec - timeval_start.tv_usec; - open_timeval_diff.tv_sec = timeval_stop.tv_sec - timeval_start.tv_sec; - if(open_timeval_diff.tv_usec < 0) { - open_timeval_diff.tv_usec += 1000000; - open_timeval_diff.tv_sec--; - } /* end if */ + /* Start timer for stat() call */ + if(fa->flags & H5FD_LOG_TIME_STAT) { + H5_timer_init(&stat_timer); + H5_timer_start(&stat_timer); } /* end if */ -#endif /* H5_HAVE_GETTIMEOFDAY */ -#ifdef H5_HAVE_GETTIMEOFDAY - if(fa->flags & H5FD_LOG_TIME_STAT) - HDgettimeofday(&timeval_start, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ /* Get the file stats */ if(HDfstat(fd, &sb) < 0) HSYS_GOTO_ERROR(H5E_FILE, H5E_BADFILE, NULL, "unable to fstat file") -#ifdef H5_HAVE_GETTIMEOFDAY - if(fa->flags & H5FD_LOG_TIME_STAT) { - struct timeval timeval_stop; - HDgettimeofday(&timeval_stop, NULL); - - /* Calculate the elapsed gettimeofday time */ - stat_timeval_diff.tv_usec = timeval_stop.tv_usec - timeval_start.tv_usec; - stat_timeval_diff.tv_sec = timeval_stop.tv_sec - timeval_start.tv_sec; - if(stat_timeval_diff.tv_usec < 0) { - stat_timeval_diff.tv_usec += 1000000; - stat_timeval_diff.tv_sec--; - } /* end if */ - } /* end if */ -#endif /* H5_HAVE_GETTIMEOFDAY */ + /* Stop timer for stat() call */ + if(fa->flags & H5FD_LOG_TIME_STAT) + H5_timer_stop(&stat_timer); /* Create the new file struct */ if(NULL == (file = H5FL_CALLOC(H5FD_log_t))) @@ -631,13 +610,19 @@ H5FD_log_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr) else file->logfp = stderr; -#ifdef H5_HAVE_GETTIMEOFDAY - if(file->fa.flags & H5FD_LOG_TIME_OPEN) - HDfprintf(file->logfp, "Open took: (%f s)\n", (double)open_timeval_diff.tv_sec + ((double)open_timeval_diff.tv_usec / (double)1000000.0f)); - if(file->fa.flags & H5FD_LOG_TIME_STAT) - HDfprintf(file->logfp, "Stat took: (%f s)\n", (double)stat_timeval_diff.tv_sec + ((double)stat_timeval_diff.tv_usec / (double)1000000.0f)); -#endif /* H5_HAVE_GETTIMEOFDAY */ + /* Log the timer values */ + if(file->fa.flags & H5FD_LOG_TIME_OPEN) { + H5_timevals_t open_times; /* Elapsed time for open() call */ + H5_timer_get_times(open_timer, &open_times); + HDfprintf(file->logfp, "Open took: (%f s)\n", open_times.elapsed); + } /* end if */ + if(file->fa.flags & H5FD_LOG_TIME_STAT) { + H5_timevals_t stat_times; /* Elapsed time for stat() call */ + + H5_timer_get_times(stat_timer, &stat_times); + HDfprintf(file->logfp, "Stat took: (%f s)\n", stat_times.elapsed); + } /* end if */ } /* end if */ /* Check for non-default FAPL */ @@ -684,27 +669,27 @@ static herr_t H5FD_log_close(H5FD_t *_file) { H5FD_log_t *file = (H5FD_log_t *)_file; -#ifdef H5_HAVE_GETTIMEOFDAY - struct timeval timeval_start, timeval_stop; -#endif /* H5_HAVE_GETTIMEOFDAY */ - herr_t ret_value = SUCCEED; /* Return value */ + H5_timer_t close_timer; /* Timer for close() call */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT /* Sanity check */ HDassert(file); -#ifdef H5_HAVE_GETTIMEOFDAY - if(file->fa.flags&H5FD_LOG_TIME_CLOSE) - HDgettimeofday(&timeval_start, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ + /* Start timer for close() call */ + if(file->fa.flags & H5FD_LOG_TIME_CLOSE) { + H5_timer_init(&close_timer); + H5_timer_start(&close_timer); + } /* end if */ + /* Close the underlying file */ if(HDclose(file->fd) < 0) HSYS_GOTO_ERROR(H5E_IO, H5E_CANTCLOSEFILE, FAIL, "unable to close file") -#ifdef H5_HAVE_GETTIMEOFDAY + + /* Stop timer for close() call */ if(file->fa.flags&H5FD_LOG_TIME_CLOSE) - HDgettimeofday(&timeval_stop, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ + H5_timer_stop(&close_timer); /* Dump I/O information */ if(file->fa.flags != 0) { @@ -712,20 +697,12 @@ H5FD_log_close(H5FD_t *_file) haddr_t last_addr; unsigned char last_val; -#ifdef H5_HAVE_GETTIMEOFDAY if(file->fa.flags & H5FD_LOG_TIME_CLOSE) { - struct timeval timeval_diff; - - /* Calculate the elapsed gettimeofday time */ - timeval_diff.tv_usec = timeval_stop.tv_usec - timeval_start.tv_usec; - timeval_diff.tv_sec = timeval_stop.tv_sec - timeval_start.tv_sec; - if(timeval_diff.tv_usec < 0) { - timeval_diff.tv_usec += 1000000; - timeval_diff.tv_sec--; - } /* end if */ - HDfprintf(file->logfp, "Close took: (%f s)\n", (double)timeval_diff.tv_sec + ((double)timeval_diff.tv_usec / (double)1000000.0f)); + H5_timevals_t close_times; /* Elapsed time for close() call */ + + H5_timer_get_times(close_timer, &close_times); + HDfprintf(file->logfp, "Close took: (%f s)\n", close_times.elapsed); } /* end if */ -#endif /* H5_HAVE_GETTIMEOFDAY */ /* Dump the total number of seek/read/write operations */ if(file->fa.flags & H5FD_LOG_NUM_READ) @@ -1168,11 +1145,14 @@ H5FD_log_read(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, hadd H5FD_log_t *file = (H5FD_log_t *)_file; size_t orig_size = size; /* Save the original size for later */ haddr_t orig_addr = addr; -#ifdef H5_HAVE_GETTIMEOFDAY - struct timeval timeval_start, timeval_stop; -#endif /* H5_HAVE_GETTIMEOFDAY */ + H5_timer_t read_timer; /* Timer for read operation */ + H5_timevals_t read_times; /* Elapsed time for read operation */ +#ifndef H5_HAVE_PREADWRITE + H5_timer_t seek_timer; /* Timer for seek operation */ + H5_timevals_t seek_times; /* Elapsed time for seek operation */ +#endif /* H5_HAVE_PREADWRITE */ HDoff_t offset = (HDoff_t)addr; - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT @@ -1201,59 +1181,56 @@ H5FD_log_read(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, hadd #ifndef H5_HAVE_PREADWRITE /* Seek to the correct location (if we don't have pread) */ if(addr != file->pos || OP_READ != file->op) { -#ifdef H5_HAVE_GETTIMEOFDAY - if(file->fa.flags & H5FD_LOG_TIME_SEEK) - HDgettimeofday(&timeval_start, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ + /* Start timer for seek() call */ + if(file->fa.flags & H5FD_LOG_TIME_SEEK) { + H5_timer_init(&seek_timer); + H5_timer_start(&seek_timer); + } /* end if */ + if(HDlseek(file->fd, (HDoff_t)addr, SEEK_SET) < 0) HSYS_GOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to seek to proper position") -#ifdef H5_HAVE_GETTIMEOFDAY + + /* Stop timer for seek() call */ if(file->fa.flags & H5FD_LOG_TIME_SEEK) - HDgettimeofday(&timeval_stop, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ + H5_timer_stop(&seek_timer); - /* Log information about the seek */ + /* Add to the number of seeks, when tracking that */ if(file->fa.flags & H5FD_LOG_NUM_SEEK) file->total_seek_ops++; + + /* Add to the total seek time, when tracking that */ + if(file->fa.flags & H5FD_LOG_TIME_SEEK) { + H5_timer_get_times(seek_timer, &seek_times); + file->total_seek_time += seek_times.elapsed; + } /* end if */ + + /* Emit log string if we're tracking individual seek events. */ if(file->fa.flags & H5FD_LOG_LOC_SEEK) { HDfprintf(file->logfp, "Seek: From %10a To %10a", file->pos, addr); -#ifdef H5_HAVE_GETTIMEOFDAY - if(file->fa.flags & H5FD_LOG_TIME_SEEK) { - struct timeval timeval_diff; - double time_diff; - - /* Calculate the elapsed gettimeofday time */ - timeval_diff.tv_usec = timeval_stop.tv_usec - timeval_start.tv_usec; - timeval_diff.tv_sec = timeval_stop.tv_sec - timeval_start.tv_sec; - if(timeval_diff.tv_usec < 0) { - timeval_diff.tv_usec += 1000000; - timeval_diff.tv_sec--; - } /* end if */ - time_diff = (double)timeval_diff.tv_sec + ((double)timeval_diff.tv_usec / (double)1000000.0f); - HDfprintf(file->logfp, " (%fs @ %.6lu.%.6llu)\n", time_diff, (unsigned long long)timeval_start.tv_sec, (unsigned long long)timeval_start.tv_usec); - /* Add to total seek time */ - file->total_seek_time += time_diff; - } /* end if */ - else - HDfprintf(file->logfp, "\n"); -#else /* H5_HAVE_GETTIMEOFDAY */ - HDfprintf(file->logfp, "\n"); -#endif /* H5_HAVE_GETTIMEOFDAY */ + /* Add the seek time, if we're tracking that. + * Note that the seek time is NOT emitted for when just H5FD_LOG_TIME_SEEK + * is set. + */ + if(file->fa.flags & H5FD_LOG_TIME_SEEK) + HDfprintf(file->logfp, " (%fs @ %f)\n", seek_times.elapsed, seek_timer.initial.elapsed); + else + HDfprintf(file->logfp, "\n"); } /* end if */ } /* end if */ #endif /* H5_HAVE_PREADWRITE */ + /* Start timer for read operation */ + if(file->fa.flags & H5FD_LOG_TIME_READ) { + H5_timer_init(&read_timer); + H5_timer_start(&read_timer); + } /* end if */ + /* * Read data, being careful of interrupted system calls, partial results, * and the end of the file. */ -#ifdef H5_HAVE_GETTIMEOFDAY - if(file->fa.flags & H5FD_LOG_TIME_READ) - HDgettimeofday(&timeval_start, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ while(size > 0) { - h5_posix_io_t bytes_in = 0; /* # of bytes to read */ h5_posix_io_ret_t bytes_read = -1; /* # of bytes actually read */ @@ -1301,14 +1278,22 @@ H5FD_log_read(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, hadd buf = (char *)buf + bytes_read; } /* end while */ -#ifdef H5_HAVE_GETTIMEOFDAY + + /* Stop timer for read operation */ if(file->fa.flags & H5FD_LOG_TIME_READ) - HDgettimeofday(&timeval_stop, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ + H5_timer_stop(&read_timer); - /* Log information about the read */ + /* Add to the number of reads, when tracking that */ if(file->fa.flags & H5FD_LOG_NUM_READ) file->total_read_ops++; + + /* Add to the total read time, when tracking that */ + if(file->fa.flags & H5FD_LOG_TIME_READ) { + H5_timer_get_times(read_timer, &read_times); + file->total_read_time += read_times.elapsed; + } /* end if */ + + /* Log information about the read */ if(file->fa.flags & H5FD_LOG_LOC_READ) { HDfprintf(file->logfp, "%10a-%10a (%10Zu bytes) (%s) Read", orig_addr, (orig_addr + orig_size) - 1, orig_size, flavors[type]); @@ -1318,30 +1303,14 @@ H5FD_log_read(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, hadd HDassert(type == H5FD_MEM_DEFAULT || type == (H5FD_mem_t)file->flavor[(orig_addr + orig_size) - 1] || (H5FD_mem_t)file->flavor[(orig_addr + orig_size) - 1] == H5FD_MEM_DEFAULT); } /* end if */ - -#ifdef H5_HAVE_GETTIMEOFDAY - if(file->fa.flags & H5FD_LOG_TIME_READ) { - struct timeval timeval_diff; - double time_diff; - - /* Calculate the elapsed gettimeofday time */ - timeval_diff.tv_usec = timeval_stop.tv_usec - timeval_start.tv_usec; - timeval_diff.tv_sec = timeval_stop.tv_sec - timeval_start.tv_sec; - if(timeval_diff.tv_usec < 0) { - timeval_diff.tv_usec += 1000000; - timeval_diff.tv_sec--; - } /* end if */ - time_diff = (double)timeval_diff.tv_sec + ((double)timeval_diff.tv_usec / (double)1000000.0f); - HDfprintf(file->logfp, " (%fs @ %.6lu.%.6llu)\n", time_diff, (unsigned long long)timeval_start.tv_sec, (unsigned long long)timeval_start.tv_usec); - - /* Add to total read time */ - file->total_read_time += time_diff; - } /* end if */ + /* Add the read time, if we're tracking that. + * Note that the read time is NOT emitted for when just H5FD_LOG_TIME_READ + * is set. + */ + if(file->fa.flags & H5FD_LOG_TIME_READ) + HDfprintf(file->logfp, " (%fs @ %f)\n", read_times.elapsed, read_timer.initial.elapsed); else HDfprintf(file->logfp, "\n"); -#else /* H5_HAVE_GETTIMEOFDAY */ - HDfprintf(file->logfp, "\n"); -#endif /* H5_HAVE_GETTIMEOFDAY */ } /* end if */ /* Update current position */ @@ -1380,11 +1349,14 @@ H5FD_log_write(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, had H5FD_log_t *file = (H5FD_log_t *)_file; size_t orig_size = size; /* Save the original size for later */ haddr_t orig_addr = addr; -#ifdef H5_HAVE_GETTIMEOFDAY - struct timeval timeval_start, timeval_stop; -#endif /* H5_HAVE_GETTIMEOFDAY */ + H5_timer_t write_timer; /* Timer for write operation */ + H5_timevals_t write_times; /* Elapsed time for write operation */ +#ifndef H5_HAVE_PREADWRITE + H5_timer_t seek_timer; /* Timer for seek operation */ + H5_timevals_t seek_times; /* Elapsed time for seek operation */ +#endif /* H5_HAVE_PREADWRITE */ HDoff_t offset = (HDoff_t)addr; - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT @@ -1418,59 +1390,56 @@ H5FD_log_write(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, had #ifndef H5_HAVE_PREADWRITE /* Seek to the correct location (if we don't have pwrite) */ if(addr != file->pos || OP_WRITE != file->op) { -#ifdef H5_HAVE_GETTIMEOFDAY - if(file->fa.flags & H5FD_LOG_TIME_SEEK) - HDgettimeofday(&timeval_start, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ + /* Start timer for seek() call */ + if(file->fa.flags & H5FD_LOG_TIME_SEEK) { + H5_timer_init(&seek_timer); + H5_timer_start(&seek_timer); + } /* end if */ + if(HDlseek(file->fd, (HDoff_t)addr, SEEK_SET) < 0) HSYS_GOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to seek to proper position") -#ifdef H5_HAVE_GETTIMEOFDAY + + /* Stop timer for seek() call */ if(file->fa.flags & H5FD_LOG_TIME_SEEK) - HDgettimeofday(&timeval_stop, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ + H5_timer_stop(&seek_timer); - /* Log information about the seek */ + /* Add to the number of seeks, when tracking that */ if(file->fa.flags & H5FD_LOG_NUM_SEEK) file->total_seek_ops++; + + /* Add to the total seek time, when tracking that */ + if(file->fa.flags & H5FD_LOG_TIME_SEEK) { + H5_timer_get_times(seek_timer, &seek_times); + file->total_seek_time += seek_times.elapsed; + } /* end if */ + + /* Emit log string if we're tracking individual seek events. */ if(file->fa.flags & H5FD_LOG_LOC_SEEK) { HDfprintf(file->logfp, "Seek: From %10a To %10a", file->pos, addr); -#ifdef H5_HAVE_GETTIMEOFDAY - if(file->fa.flags & H5FD_LOG_TIME_SEEK) { - struct timeval timeval_diff; - double time_diff; - - /* Calculate the elapsed gettimeofday time */ - timeval_diff.tv_usec = timeval_stop.tv_usec - timeval_start.tv_usec; - timeval_diff.tv_sec = timeval_stop.tv_sec - timeval_start.tv_sec; - if(timeval_diff.tv_usec < 0) { - timeval_diff.tv_usec += 1000000; - timeval_diff.tv_sec--; - } /* end if */ - time_diff = (double)timeval_diff.tv_sec + ((double)timeval_diff.tv_usec / (double)1000000.0f); - HDfprintf(file->logfp, " (%fs @ %.6lu.%.6llu)\n", time_diff, (unsigned long long)timeval_start.tv_sec, (unsigned long long)timeval_start.tv_usec); - /* Add to total seek time */ - file->total_seek_time += time_diff; - } /* end if */ - else - HDfprintf(file->logfp, "\n"); -#else /* H5_HAVE_GETTIMEOFDAY */ - HDfprintf(file->logfp, "\n"); -#endif /* H5_HAVE_GETTIMEOFDAY */ + /* Add the seek time, if we're tracking that. + * Note that the seek time is NOT emitted for when just H5FD_LOG_TIME_SEEK + * is set. + */ + if(file->fa.flags & H5FD_LOG_TIME_SEEK) + HDfprintf(file->logfp, " (%fs @ %f)\n", seek_times.elapsed, seek_timer.initial.elapsed); + else + HDfprintf(file->logfp, "\n"); } /* end if */ } /* end if */ #endif /* H5_HAVE_PREADWRITE */ + /* Start timer for write operation */ + if(file->fa.flags&H5FD_LOG_TIME_WRITE) { + H5_timer_init(&write_timer); + H5_timer_start(&write_timer); + } /* end if */ + /* * Write the data, being careful of interrupted system calls and partial * results */ -#ifdef H5_HAVE_GETTIMEOFDAY - if(file->fa.flags&H5FD_LOG_TIME_WRITE) - HDgettimeofday(&timeval_start, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ while(size > 0) { - h5_posix_io_t bytes_in = 0; /* # of bytes to write */ h5_posix_io_ret_t bytes_wrote = -1; /* # of bytes written */ @@ -1511,14 +1480,22 @@ H5FD_log_write(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, had addr += (haddr_t)bytes_wrote; buf = (const char *)buf + bytes_wrote; } /* end while */ -#ifdef H5_HAVE_GETTIMEOFDAY + + /* Stop timer for write operation */ if(file->fa.flags & H5FD_LOG_TIME_WRITE) - HDgettimeofday(&timeval_stop, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ + H5_timer_stop(&write_timer); - /* Log information about the write */ + /* Add to the number of writes, when tracking that */ if(file->fa.flags & H5FD_LOG_NUM_WRITE) file->total_write_ops++; + + /* Add to the total write time, when tracking that */ + if(file->fa.flags & H5FD_LOG_TIME_WRITE) { + H5_timer_get_times(write_timer, &write_times); + file->total_write_time += write_times.elapsed; + } /* end if */ + + /* Log information about the write */ if(file->fa.flags & H5FD_LOG_LOC_WRITE) { HDfprintf(file->logfp, "%10a-%10a (%10Zu bytes) (%s) Written", orig_addr, (orig_addr + orig_size) - 1, orig_size, flavors[type]); @@ -1530,29 +1507,14 @@ H5FD_log_write(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, had } /* end if */ } /* end if */ -#ifdef H5_HAVE_GETTIMEOFDAY - if(file->fa.flags & H5FD_LOG_TIME_WRITE) { - struct timeval timeval_diff; - double time_diff; - - /* Calculate the elapsed gettimeofday time */ - timeval_diff.tv_usec = timeval_stop.tv_usec - timeval_start.tv_usec; - timeval_diff.tv_sec = timeval_stop.tv_sec - timeval_start.tv_sec; - if(timeval_diff.tv_usec < 0) { - timeval_diff.tv_usec += 1000000; - timeval_diff.tv_sec--; - } /* end if */ - time_diff = (double)timeval_diff.tv_sec + ((double)timeval_diff.tv_usec / (double)1000000.0f); - HDfprintf(file->logfp, " (%fs @ %.6lu.%.6llu)\n", time_diff, (unsigned long long)timeval_start.tv_sec, (unsigned long long)timeval_start.tv_usec); - - /* Add to total write time */ - file->total_write_time += time_diff; - } /* end if */ - else - HDfprintf(file->logfp, "\n"); -#else /* H5_HAVE_GETTIMEOFDAY */ - HDfprintf(file->logfp, "\n"); -#endif /* H5_HAVE_GETTIMEOFDAY */ + /* Add the write time, if we're tracking that. + * Note that the write time is NOT emitted for when just H5FD_LOG_TIME_WRITE + * is set. + */ + if(file->fa.flags & H5FD_LOG_TIME_WRITE) + HDfprintf(file->logfp, " (%fs @ %f)\n", write_times.elapsed, write_timer.initial.elapsed); + else + HDfprintf(file->logfp, "\n"); } /* end if */ /* Update current position and eof */ @@ -1597,23 +1559,22 @@ H5FD_log_truncate(H5FD_t *_file, hid_t H5_ATTR_UNUSED dxpl_id, hbool_t H5_ATTR_U /* Extend the file to make sure it's large enough */ if(!H5F_addr_eq(file->eoa, file->eof)) { -#ifdef H5_HAVE_GETTIMEOFDAY - struct timeval timeval_start, timeval_stop; -#endif /* H5_HAVE_GETTIMEOFDAY */ + H5_timer_t trunc_timer; /* Timer for truncate operation */ + H5_timevals_t trunc_times; /* Elapsed time for truncate operation */ + + /* Start timer for truncate operation */ + if(file->fa.flags & H5FD_LOG_TIME_TRUNCATE) { + H5_timer_init(&trunc_timer); + H5_timer_start(&trunc_timer); + } /* end if */ + #ifdef H5_HAVE_WIN32_API +{ LARGE_INTEGER li; /* 64-bit (union) integer for SetFilePointer() call */ DWORD dwPtrLow; /* Low-order pointer bits from SetFilePointer() * Only used as an error code here. */ - DWORD dwError; /* DWORD error code from GetLastError() */ - BOOL bError; /* Boolean error flag */ -#endif /* H5_HAVE_WIN32_API */ -#ifdef H5_HAVE_GETTIMEOFDAY - if(file->fa.flags & H5FD_LOG_TIME_TRUNCATE) - HDgettimeofday(&timeval_start, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ -#ifdef H5_HAVE_WIN32_API /* Windows uses this odd QuadPart union for 32/64-bit portability */ li.QuadPart = (__int64)file->eoa; @@ -1624,51 +1585,48 @@ H5FD_log_truncate(H5FD_t *_file, hid_t H5_ATTR_UNUSED dxpl_id, hbool_t H5_ATTR_U */ dwPtrLow = SetFilePointer(file->hFile, li.LowPart, &li.HighPart, FILE_BEGIN); if(INVALID_SET_FILE_POINTER == dwPtrLow) { + DWORD dwError; /* DWORD error code from GetLastError() */ + dwError = GetLastError(); if(dwError != NO_ERROR ) HGOTO_ERROR(H5E_FILE, H5E_FILEOPEN, FAIL, "unable to set file pointer") - } + } /* end if */ - bError = SetEndOfFile(file->hFile); - if(0 == bError) + if(0 == SetEndOfFile(file->hFile)) HGOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to extend file properly") +} #else /* H5_HAVE_WIN32_API */ + /* Truncate/extend the file */ if(-1 == HDftruncate(file->fd, (HDoff_t)file->eoa)) HSYS_GOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to extend file properly") #endif /* H5_HAVE_WIN32_API */ -#ifdef H5_HAVE_GETTIMEOFDAY + + /* Stop timer for truncate operation */ if(file->fa.flags & H5FD_LOG_TIME_TRUNCATE) - HDgettimeofday(&timeval_stop, NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ + H5_timer_stop(&trunc_timer); - /* Log information about the truncate */ + /* Add to the number of truncates, when tracking that */ if(file->fa.flags & H5FD_LOG_NUM_TRUNCATE) file->total_truncate_ops++; + + /* Add to the total truncate time, when tracking that */ + if(file->fa.flags & H5FD_LOG_TIME_TRUNCATE) { + H5_timer_get_times(trunc_timer, &trunc_times); + file->total_truncate_time += trunc_times.elapsed; + } /* end if */ + + /* Emit log string if we're tracking individual truncate events. */ if(file->fa.flags & H5FD_LOG_TRUNCATE) { HDfprintf(file->logfp, "Truncate: To %10a", file->eoa); -#ifdef H5_HAVE_GETTIMEOFDAY - if(file->fa.flags & H5FD_LOG_TIME_TRUNCATE) { - struct timeval timeval_diff; - double time_diff; - - /* Calculate the elapsed gettimeofday time */ - timeval_diff.tv_usec = timeval_stop.tv_usec - timeval_start.tv_usec; - timeval_diff.tv_sec = timeval_stop.tv_sec - timeval_start.tv_sec; - if(timeval_diff.tv_usec < 0) { - timeval_diff.tv_usec += 1000000; - timeval_diff.tv_sec--; - } /* end if */ - time_diff = (double)timeval_diff.tv_sec + ((double)timeval_diff.tv_usec / (double)1000000.0f); - HDfprintf(file->logfp, " (%fs @ %.6lu.%.6llu)\n", time_diff, (unsigned long long)timeval_start.tv_sec, (unsigned long long)timeval_start.tv_usec); - /* Add to total truncate time */ - file->total_truncate_time += time_diff; - } /* end if */ - else - HDfprintf(file->logfp, "\n"); -#else /* H5_HAVE_GETTIMEOFDAY */ - HDfprintf(file->logfp, "\n"); -#endif /* H5_HAVE_GETTIMEOFDAY */ + /* Add the truncate time, if we're tracking that. + * Note that the truncate time is NOT emitted for when just H5FD_LOG_TIME_TRUNCATE + * is set. + */ + if(file->fa.flags & H5FD_LOG_TIME_TRUNCATE) + HDfprintf(file->logfp, " (%fs @ %f)\n", trunc_times.elapsed, trunc_timer.initial.elapsed); + else + HDfprintf(file->logfp, "\n"); } /* end if */ /* Update the eof value */ diff --git a/src/H5Fsuper.c b/src/H5Fsuper.c index e5d4cde..9fd2831 100644 --- a/src/H5Fsuper.c +++ b/src/H5Fsuper.c @@ -897,7 +897,13 @@ H5F__super_read(H5F_t *f, H5P_genplist_t *fa_plist, hbool_t initial_read) } else { if(H5F__super_ext_remove_msg(f, H5O_FSINFO_ID) < 0) + { +#if 1 /* bug fix test code -- tidy this up if all goes well */ /* JRM */ + f->shared->sblock = NULL; +#endif /* JRM */ + HGOTO_ERROR(H5E_FILE, H5E_CANTDELETE, FAIL, "error in removing message from superblock extension") + } if(H5F__super_ext_write_msg(f, H5O_FSINFO_ID, &fsinfo, TRUE, H5O_MSG_FLAG_MARK_IF_UNKNOWN) < 0) HGOTO_ERROR(H5E_FILE, H5E_WRITEERROR, FAIL, "error in writing fsinfo message to superblock extension") diff --git a/src/H5Glink.c b/src/H5Glink.c index 6c42f1d..cbe5307 100644 --- a/src/H5Glink.c +++ b/src/H5Glink.c @@ -15,7 +15,7 @@ * * Created: H5Glink.c * Nov 13 2006 - * Quincey Koziol <koziol@hdfgroup.org> + * Quincey Koziol * * Purpose: Functions for handling links in groups. * @@ -98,7 +98,6 @@ static int H5G_link_cmp_corder_dec(const void *lnk1, const void *lnk2); * (i.e. same as strcmp()) * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Sep 5 2005 * *------------------------------------------------------------------------- @@ -125,7 +124,6 @@ H5G_link_cmp_name_inc(const void *lnk1, const void *lnk2) * (i.e. opposite strcmp()) * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Sep 25 2006 * *------------------------------------------------------------------------- @@ -151,7 +149,6 @@ H5G_link_cmp_name_dec(const void *lnk1, const void *lnk2) * as equal, their order in the sorted array is undefined. * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Nov 6 2006 * *------------------------------------------------------------------------- @@ -186,7 +183,6 @@ H5G_link_cmp_corder_inc(const void *lnk1, const void *lnk2) * as equal, their order in the sorted array is undefined. * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Nov 6 2006 * *------------------------------------------------------------------------- @@ -217,7 +213,6 @@ H5G_link_cmp_corder_dec(const void *lnk1, const void *lnk2) * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 16 2006 * *------------------------------------------------------------------------- @@ -561,7 +556,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Nov 13 2006 * *------------------------------------------------------------------------- diff --git a/src/H5Gloc.c b/src/H5Gloc.c index 4d89abb..2461c51 100644 --- a/src/H5Gloc.c +++ b/src/H5Gloc.c @@ -15,7 +15,7 @@ * * Created: H5Gloc.c * Sep 13 2005 - * Quincey Koziol <koziol@ncsa.uiuc.edu> + * Quincey Koziol * * Purpose: Functions for working with group "locations" * @@ -809,9 +809,9 @@ done: /*------------------------------------------------------------------------- - * Function: H5G_loc_info + * Function: H5G_loc_info * - * Purpose: Retrieve the data model information for an object from a group location + * Purpose: Retrieve the data model information for an object from a group location * and path to that object * * Return: Non-negative on success/Negative on failure diff --git a/src/H5Gname.c b/src/H5Gname.c index 4b0f04c..e1004de 100644 --- a/src/H5Gname.c +++ b/src/H5Gname.c @@ -15,7 +15,7 @@ * * Created: H5Gname.c * Sep 12 2005 - * Quincey Koziol <koziol@ncsa.uiuc.edu> + * Quincey Koziol * * Purpose: Functions for handling group hierarchy paths. * @@ -123,7 +123,6 @@ H5FL_BLK_EXTERN(str_buf); * Failure: Ptr to the null terminator of NAME. * * Programmer: Robb Matzke - * matzke@llnl.gov * Aug 11 1997 * *------------------------------------------------------------------------- @@ -216,7 +215,7 @@ done: * Return: TRUE for valid prefix, FALSE for not a valid prefix, FAIL * on error * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: September 24, 2002 * @@ -281,7 +280,7 @@ done: * * Return: Pointer to reference counted string on success, NULL on error * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: August 19, 2005 * @@ -343,7 +342,7 @@ done: * Return: Success: Non-NULL, combined path * Failure: NULL * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * Tuesday, October 11, 2005 * *------------------------------------------------------------------------- @@ -379,7 +378,7 @@ H5G_build_fullpath_refstr_str(H5RS_str_t *prefix_r, const char *name) * * Return: Pointer to reference counted string on success, NULL on error * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: August 19, 2005 * @@ -448,7 +447,7 @@ H5G__name_init(H5G_name_t *name, const char *path) * Return: Success: Non-negative * Failure: Negative * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Programmer: Pedro Vicente * Thursday, August 22, 2002 * *------------------------------------------------------------------------- @@ -552,10 +551,6 @@ H5G_name_copy(H5G_name_t *dst, const H5G_name_t *src, H5_copy_depth_t depth) * Programmer: Quincey Koziol * Tuesday, December 13, 2005 * - * Modifications: Leon Arber - * Oct. 18, 2006 - * Added functionality to get the name for a reference. - * *------------------------------------------------------------------------- */ ssize_t @@ -639,7 +634,7 @@ H5G_name_reset(H5G_name_t *name) * * Return: Success * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Programmer: Pedro Vicente * * Date: August 22, 2002 * @@ -777,7 +772,7 @@ done: * * Return: Success: 0, Failure: -1 * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Programmer: Pedro Vicente * * Date: June 5, 2002 * @@ -1060,7 +1055,7 @@ done: * * Return: Success: 0, Failure: -1 * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Programmer: Pedro Vicente * * Date: June 11, 2002 * diff --git a/src/H5Gnode.c b/src/H5Gnode.c index 9faa0b5..2e7b367 100644 --- a/src/H5Gnode.c +++ b/src/H5Gnode.c @@ -15,7 +15,7 @@ * * Created: H5Gnode.c * Jun 26 1997 - * Robb Matzke <matzke@llnl.gov> + * Robb Matzke * * Purpose: Functions for handling symbol table nodes. A * symbol table node is a small collection of symbol @@ -145,8 +145,6 @@ H5FL_SEQ_DEFINE(H5G_entry_t); * Programmer: Robb Matzke * Wednesday, October 8, 1997 * - * Modifications: - * *------------------------------------------------------------------------- */ static H5UC_t * @@ -169,7 +167,6 @@ H5G_node_get_shared(const H5F_t *f, const void H5_ATTR_UNUSED *_udata) * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke - * matzke@llnl.gov * Jul 8 1997 * *------------------------------------------------------------------------- @@ -199,7 +196,6 @@ H5G_node_decode_key(const H5B_shared_t *shared, const uint8_t *raw, void *_key) * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke - * matzke@llnl.gov * Jul 8 1997 * *------------------------------------------------------------------------- @@ -270,7 +266,6 @@ H5G_node_debug_key(FILE *stream, int indent, int fwidth, const void *_key, * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Jan 15 2003 * *------------------------------------------------------------------------- @@ -310,7 +305,6 @@ H5G__node_free(H5G_node_t *sym) * Failure: Negative * * Programmer: Robb Matzke - * matzke@llnl.gov * Jun 23 1997 * *------------------------------------------------------------------------- @@ -382,11 +376,8 @@ done: * Failure: FAIL (same as LT_KEY<RT_KEY) * * Programmer: Robb Matzke - * matzke@llnl.gov * Jun 23 1997 * - * Modifications: - * *------------------------------------------------------------------------- */ static herr_t @@ -439,11 +430,8 @@ done: * Failure: FAIL (same as UDATA < LT_KEY) * * Programmer: Robb Matzke - * matzke@llnl.gov * Jun 23 1997 * - * Modifications: - * *------------------------------------------------------------------------- */ static herr_t @@ -501,7 +489,6 @@ done: * Failure: Negative if not found. * * Programmer: Robb Matzke - * matzke@llnl.gov * Jun 23 1997 * *------------------------------------------------------------------------- @@ -591,7 +578,6 @@ done: * Failure: H5B_INS_ERROR, NEW_NODE_P might not be initialized. * * Programmer: Robb Matzke - * matzke@llnl.gov * Jun 24 1997 * *------------------------------------------------------------------------- @@ -951,7 +937,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke - * matzke@llnl.gov * Jun 24 1997 * *------------------------------------------------------------------------- @@ -1368,7 +1353,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Nov 19 2006 * *------------------------------------------------------------------------- @@ -1475,7 +1459,6 @@ H5G__node_iterate_size(H5F_t *f, const void H5_ATTR_UNUSED *_lt_key, * Return: 0(zero) on success/Negative on failure * * Programmer: Robb Matzke - * matzke@llnl.gov * Aug 4 1997 * *------------------------------------------------------------------------- diff --git a/src/H5HLmodule.h b/src/H5HLmodule.h index b0fd750..712c7c1 100644 --- a/src/H5HLmodule.h +++ b/src/H5HLmodule.h @@ -11,7 +11,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Programmer: Quincey Koziol * Saturday, September 12, 2015 * * Purpose: This file contains declarations which define macros for the diff --git a/src/H5HLpkg.h b/src/H5HLpkg.h index 44a2cfb..9891e10 100644 --- a/src/H5HLpkg.h +++ b/src/H5HLpkg.h @@ -12,7 +12,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Programmer: Quincey Koziol * Wednesday, July 9, 2003 * * Purpose: This file contains declarations which are visible diff --git a/src/H5HLprivate.h b/src/H5HLprivate.h index 7a53b25..60505ee 100644 --- a/src/H5HLprivate.h +++ b/src/H5HLprivate.h @@ -15,7 +15,7 @@ * * Created: H5HLprivate.h * Jul 16 1997 - * Robb Matzke <matzke@llnl.gov> + * Robb Matzke * * Purpose: Private declarations for the H5HL (local heap) package. * @@ -33,9 +33,9 @@ #include "H5ACprivate.h" /* Metadata cache */ #include "H5CXprivate.h" /* API Contexts */ #include "H5Dprivate.h" /* Datasets */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fprivate.h" /* File access */ -#include "H5FLprivate.h" /* Free Lists */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fprivate.h" /* File access */ +#include "H5FLprivate.h" /* Free Lists */ #include "H5Gprivate.h" /* Groups */ #include "H5Ipkg.h" /* IDs */ #include "H5MMprivate.h" /* Memory management */ @@ -48,25 +48,25 @@ /* Local Macros */ /* Combine a Type number and an atom index into an atom */ -#define H5I_MAKE(g,i) ((((hid_t)(g) & TYPE_MASK) << ID_BITS) | \ - ((hid_t)(i) & ID_MASK)) +#define H5I_MAKE(g,i) ((((hid_t)(g) & TYPE_MASK) << ID_BITS) | \ + ((hid_t)(i) & ID_MASK)) /* Local typedefs */ /* Atom information structure used */ typedef struct H5I_id_info_t { - hid_t id; /* ID for this info */ - unsigned count; /* ref. count for this atom */ + hid_t id; /* ID for this info */ + unsigned count; /* ref. count for this atom */ unsigned app_count; /* ref. count of application visible atoms */ - const void *obj_ptr; /* pointer associated with the atom */ + const void *obj_ptr; /* pointer associated with the atom */ } H5I_id_info_t; /* ID type structure used */ typedef struct { const H5I_class_t *cls; /* Pointer to ID class */ - unsigned init_count; /* # of times this type has been initialized*/ - uint64_t id_count; /* Current number of IDs held */ - uint64_t nextid; /* ID to use for the next atom */ + unsigned init_count; /* # of times this type has been initialized*/ + uint64_t id_count; /* Current number of IDs held */ + uint64_t nextid; /* ID to use for the next atom */ H5I_id_info_t *last_info; /* Info for most recent ID looked up */ H5SL_t *ids; /* Pointer to skip list that stores IDs */ } H5I_id_type_t; @@ -156,14 +156,14 @@ static int H5I__id_dump_cb(void *_item, void *_key, void *_udata); * Return: Success: Positive if any action was taken that might * affect some other interface; zero otherwise. * - * Failure: Negative + * Failure: Negative * *------------------------------------------------------------------------- */ int H5I_term_package(void) { - int n = 0; + int n = 0; FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -293,7 +293,7 @@ done: herr_t H5I_register_type(const H5I_class_t *cls) { - H5I_id_type_t *type_ptr = NULL; /* Ptr to the atomic type*/ + H5I_id_type_t *type_ptr = NULL; /* Ptr to the atomic type*/ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -328,7 +328,7 @@ H5I_register_type(const H5I_class_t *cls) type_ptr->init_count++; done: - if(ret_value < 0) { /* Clean up on error */ + if(ret_value < 0) { /* Clean up on error */ if(type_ptr) { if(type_ptr->ids) H5SL_close(type_ptr->ids); @@ -382,8 +382,8 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: James Laird - * Nathaniel Furrer + * Programmer: James Laird + * Nathaniel Furrer * Friday, April 23, 2004 * *------------------------------------------------------------------------- @@ -432,7 +432,7 @@ done: * * Failure: Negative * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, March 24, 1999 * *------------------------------------------------------------------------- @@ -512,8 +512,8 @@ H5I__unwrap(void *obj_ptr, H5I_type_t type) * * Return: SUCCEED/FAIL * - * Programmer: James Laird - * Nathaniel Furrer + * Programmer: James Laird + * Nathaniel Furrer * Friday, April 23, 2004 * *------------------------------------------------------------------------- @@ -544,7 +544,7 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, March 24, 1999 * *------------------------------------------------------------------------- @@ -655,8 +655,8 @@ H5I__clear_type_cb(void *_id, void H5_ATTR_UNUSED *key, void *_udata) * * Return: SUCCEED/FAIL * - * Programmer: Nathaniel Furrer - * James Laird + * Programmer: Nathaniel Furrer + * James Laird * *------------------------------------------------------------------------- */ @@ -688,15 +688,15 @@ done: * * Return: SUCCEED/FAIL * - * Programmer: Nathaniel Furrer - * James Laird + * Programmer: Nathaniel Furrer + * James Laird * *------------------------------------------------------------------------- */ static herr_t H5I__destroy_type(H5I_type_t type) { - H5I_id_type_t *type_ptr; /* ptr to the atomic type */ + H5I_id_type_t *type_ptr; /* ptr to the atomic type */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -900,8 +900,8 @@ done: * with the specified ID. * Failure: NULL * - * Programmer: Quincey Koziol - * Saturday, February 27, 2010 + * Programmer: Quincey Koziol + * Saturday, February 27, 2010 * *------------------------------------------------------------------------- */ @@ -909,7 +909,7 @@ void * H5I_subst(hid_t id, const void *new_object) { H5I_id_info_t *id_ptr; /* Pointer to the atom */ - void *ret_value = NULL; /* Return value */ + void *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI(NULL) @@ -943,8 +943,8 @@ done: void * H5I_object(hid_t id) { - H5I_id_info_t *id_ptr; /* Pointer to the new atom */ - void *ret_value = NULL; /* Return value */ + H5I_id_info_t *id_ptr; /* Pointer to the new atom */ + void *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI_NOERR @@ -1002,8 +1002,8 @@ done: * specified ID. * Failure: NULL * - * Programmer: Quincey Koziol - * Wednesday, July 31, 2002 + * Programmer: Quincey Koziol + * Wednesday, July 31, 2002 * *------------------------------------------------------------------------- */ @@ -1040,8 +1040,8 @@ H5I_object_verify(hid_t id, H5I_type_t id_type) * ID types). * Failure: H5I_BADID * - * Programmer: Robb Matzke - * Friday, February 19, 1999 + * Programmer: Robb Matzke + * Friday, February 19, 1999 * *------------------------------------------------------------------------- */ @@ -1087,7 +1087,7 @@ H5Iget_type(hid_t id) ret_value = H5I_get_type(id); if(ret_value <= H5I_BADID || (int)ret_value >= H5I_next_type || NULL == H5I_object(id)) - HGOTO_DONE(H5I_BADID); + HGOTO_DONE(H5I_BADID); done: FUNC_LEAVE_API(ret_value) @@ -1157,8 +1157,8 @@ done: * calling H5I_object(). * Failure: NULL * - * Programmer: James Laird - * Nathaniel Furrer + * Programmer: James Laird + * Nathaniel Furrer * *------------------------------------------------------------------------- */ @@ -1192,15 +1192,15 @@ done: * calling H5I_object(). * Failure: NULL * - * Programmer: James Laird - * Nat Furrer + * Programmer: James Laird + * Nat Furrer * *------------------------------------------------------------------------- */ static void * H5I__remove_verify(hid_t id, H5I_type_t id_type) { - void * ret_value = NULL; /*return value */ + void * ret_value = NULL; /*return value */ FUNC_ENTER_STATIC_NOERR @@ -1232,8 +1232,8 @@ H5I__remove_verify(hid_t id, H5I_type_t id_type) static void * H5I__remove_common(H5I_id_type_t *type_ptr, hid_t id) { - H5I_id_info_t *curr_id; /* Pointer to the current atom */ - void *ret_value = NULL; /* Return value */ + H5I_id_info_t *curr_id; /* Pointer to the current atom */ + void *ret_value = NULL; /* Return value */ FUNC_ENTER_STATIC @@ -1269,16 +1269,16 @@ done: * calling H5I_object(). * Failure: NULL * - * Programmer: Unknown + * Programmer: Unknown * *------------------------------------------------------------------------- */ void * H5I_remove(hid_t id) { - H5I_id_type_t *type_ptr; /* Pointer to the atomic type */ - H5I_type_t type; /* Atom's atomic type */ - void * ret_value = NULL; /* Return value */ + H5I_id_type_t *type_ptr; /* Pointer to the atomic type */ + H5I_type_t type; /* Atom's atomic type */ + void * ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI(NULL) @@ -1380,7 +1380,7 @@ H5I_dec_ref(hid_t id) * file. We have to close the dataset anyway. (SLU - 2010/9/7) */ if(1 == id_ptr->count) { - H5I_id_type_t *type_ptr; /*ptr to the type */ + H5I_id_type_t *type_ptr; /*ptr to the type */ /* Get the ID's type */ type_ptr = H5I_id_type_list_g[H5I_TYPE(id)]; @@ -1701,7 +1701,7 @@ done: * Purpose: Decrements the reference count on an entire type of IDs. * If the type reference count becomes zero then the type is * destroyed along with all atoms in that type regardless of - * their reference counts. Destroying IDs involves calling + * their reference counts. Destroying IDs involves calling * the free-func for each ID's object and then adding the ID * struct to the ID free list. Public interface to * H5I_dec_type_ref. @@ -1743,7 +1743,7 @@ done: * Purpose: Decrements the reference count on an entire type of IDs. * If the type reference count becomes zero then the type is * destroyed along with all atoms in that type regardless of - * their reference counts. Destroying IDs involves calling + * their reference counts. Destroying IDs involves calling * the free-func for each ID's object and then adding the ID * struct to the ID free list. * Returns the number of references to the type on success; a @@ -1913,7 +1913,7 @@ H5I__search_cb(void *obj, hid_t id, void *_udata) /* Set the return value based on the callback's return value */ if(cb_ret_val > 0) { - ret_value = H5_ITER_STOP; /* terminate iteration early */ + ret_value = H5_ITER_STOP; /* terminate iteration early */ udata->ret_obj = obj; /* also set out parameter */ } else if(cb_ret_val < 0) @@ -2004,7 +2004,7 @@ H5I__iterate_pub_cb(void H5_ATTR_UNUSED *obj, hid_t id, void *_udata) /* Set the return value based on the callback's return value */ if(cb_ret_val > 0) - ret_value = H5_ITER_STOP; /* terminate iteration early */ + ret_value = H5_ITER_STOP; /* terminate iteration early */ else if(cb_ret_val < 0) ret_value = H5_ITER_ERROR; /* indicate failure (which terminates iteration) */ else @@ -2100,7 +2100,7 @@ H5I__iterate_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) /* Set the return value based on the callback's return value */ if(cb_ret_val > 0) - ret_value = H5_ITER_STOP; /* terminate iteration early */ + ret_value = H5_ITER_STOP; /* terminate iteration early */ else if(cb_ret_val < 0) ret_value = H5_ITER_ERROR; /* indicate failure (which terminates iteration) */ } /* end if */ @@ -2110,7 +2110,7 @@ H5I__iterate_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) /*------------------------------------------------------------------------- - * Function: H5I_iterate + * Function: H5I_iterate * * Purpose: Apply function FUNC to each member of type TYPE (with * non-zero application reference count if app_ref is TRUE). @@ -2138,7 +2138,7 @@ herr_t H5I_iterate(H5I_type_t type, H5I_search_func_t func, void *udata, hbool_t app_ref) { H5I_id_type_t *type_ptr; /* Pointer to the type */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -2183,9 +2183,9 @@ done: static H5I_id_info_t * H5I__find_id(hid_t id) { - H5I_type_t type; /*ID's type */ - H5I_id_type_t *type_ptr; /*ptr to the type */ - H5I_id_info_t *ret_value = NULL; /* Return value */ + H5I_type_t type; /*ID's type */ + H5I_id_type_t *type_ptr; /*ptr to the type */ + H5I_id_info_t *ret_value = NULL; /* Return value */ FUNC_ENTER_STATIC_NOERR @@ -2414,9 +2414,9 @@ H5I__id_dump_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) FUNC_ENTER_STATIC_NOERR - HDfprintf(stderr, " id = %lu\n", (unsigned long)(item->id)); - HDfprintf(stderr, " count = %u\n", item->count); - HDfprintf(stderr, " obj = 0x%08lx\n", (unsigned long)(item->obj_ptr)); + HDfprintf(stderr, " id = %lu\n", (unsigned long)(item->id)); + HDfprintf(stderr, " count = %u\n", item->count); + HDfprintf(stderr, " obj = 0x%08p\n", item->obj_ptr); /* Get the group location, so we get get the name */ switch (type) { @@ -2505,14 +2505,14 @@ H5I_dump_ids_for_type(H5I_type_t type) if(type_ptr) { /* Header */ - HDfprintf(stderr, " init_count = %u\n", type_ptr->init_count); - HDfprintf(stderr, " reserved = %u\n", type_ptr->cls->reserved); - HDfprintf(stderr, " id_count = %llu\n", (unsigned long long)type_ptr->id_count); - HDfprintf(stderr, " nextid = %llu\n", (unsigned long long)type_ptr->nextid); + HDfprintf(stderr, " init_count = %u\n", type_ptr->init_count); + HDfprintf(stderr, " reserved = %u\n", type_ptr->cls->reserved); + HDfprintf(stderr, " id_count = %llu\n", (unsigned long long)type_ptr->id_count); + HDfprintf(stderr, " nextid = %llu\n", (unsigned long long)type_ptr->nextid); /* List */ if(type_ptr->id_count > 0) { - HDfprintf(stderr, " List:\n"); + HDfprintf(stderr, " List:\n"); H5SL_iterate(type_ptr->ids, H5I__id_dump_cb, &type); } } diff --git a/src/H5Oattr.c b/src/H5Oattr.c index aeaebea..e38ef5c 100644 --- a/src/H5Oattr.c +++ b/src/H5Oattr.c @@ -238,6 +238,11 @@ H5O_attr_decode(H5F_t *f, H5O_t *open_oh, unsigned H5_ATTR_UNUSED mesg_flags, /* Go get the data */ if(attr->shared->data_size) { + /* Ensure that data size doesn't exceed buffer size, in case of + it's being corrupted in the file */ + if(attr->shared->data_size > p_size) + HGOTO_ERROR(H5E_RESOURCE, H5E_OVERFLOW, NULL, "data size exceeds buffer size") + if(NULL == (attr->shared->data = H5FL_BLK_MALLOC(attr_buf, attr->shared->data_size))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") H5MM_memcpy(attr->shared->data, p, attr->shared->data_size); diff --git a/src/H5Ochunk.c b/src/H5Ochunk.c index 72402e4..cb31cec 100644 --- a/src/H5Ochunk.c +++ b/src/H5Ochunk.c @@ -15,7 +15,7 @@ * * Created: H5Ochunk.c * Jul 13 2008 - * Quincey Koziol <koziol@hdfgroup.org> + * Quincey Koziol * * Purpose: Object header chunk routines. * @@ -84,7 +84,6 @@ H5FL_DEFINE(H5O_chunk_proxy_t); * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Jul 13 2008 * *------------------------------------------------------------------------- @@ -146,14 +145,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5O_chunk_protect + * Function: H5O__chunk_protect * * Purpose: Protect an object header chunk for modifications * * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Jul 17 2008 * *------------------------------------------------------------------------- @@ -227,7 +225,6 @@ done: * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Jul 17 2008 * *------------------------------------------------------------------------- @@ -278,7 +275,6 @@ done: * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * May 6 2010 * *------------------------------------------------------------------------- @@ -319,7 +315,6 @@ done: * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Jul 13 2008 * *------------------------------------------------------------------------- @@ -370,7 +365,6 @@ done: * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Jul 13 2008 * *------------------------------------------------------------------------- @@ -415,7 +409,6 @@ done: * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * July 13, 2008 * *------------------------------------------------------------------------- diff --git a/src/H5Ocont.c b/src/H5Ocont.c index ad54272..68a88e2 100644 --- a/src/H5Ocont.c +++ b/src/H5Ocont.c @@ -15,7 +15,7 @@ * * Created: H5Ocont.c * Aug 6 1997 - * Robb Matzke <matzke@llnl.gov> + * Robb Matzke * * Purpose: The object header continuation message. This * message is only generated and read from within @@ -83,7 +83,6 @@ H5FL_DEFINE(H5O_cont_t); * Failure: NULL * * Programmer: Robb Matzke - * matzke@llnl.gov * Aug 6 1997 * *------------------------------------------------------------------------- @@ -127,7 +126,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke - * matzke@llnl.gov * Aug 7 1997 * *------------------------------------------------------------------------- @@ -166,7 +164,6 @@ H5O__cont_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, co * Failure: zero * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Sep 6 2005 * *------------------------------------------------------------------------- @@ -253,7 +250,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke - * matzke@llnl.gov * Aug 6 1997 * *------------------------------------------------------------------------- diff --git a/src/H5Ofsinfo.c b/src/H5Ofsinfo.c index 78e8e19..e2fa4e5 100644 --- a/src/H5Ofsinfo.c +++ b/src/H5Ofsinfo.c @@ -110,7 +110,7 @@ H5O_fsinfo_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, /* Allocate space for message */ if(NULL == (fsinfo = H5FL_CALLOC(H5O_fsinfo_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; ptype++) fsinfo->fs_addr[ptype - 1] = HADDR_UNDEF; diff --git a/src/H5Olink.c b/src/H5Olink.c index 1f0c6c7..c27b51f 100644 --- a/src/H5Olink.c +++ b/src/H5Olink.c @@ -119,11 +119,12 @@ H5FL_DEFINE_STATIC(H5O_link_t); static void * H5O__link_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, - size_t H5_ATTR_UNUSED p_size, const uint8_t *p) + size_t p_size, const uint8_t *p) { H5O_link_t *lnk = NULL; /* Pointer to link message */ size_t len = 0; /* Length of a string in the message */ unsigned char link_flags; /* Flags for encoding link info */ + const uint8_t *p_end = p + p_size; /* End of the p buffer */ void *ret_value = NULL; /* Return value */ FUNC_ENTER_STATIC @@ -199,6 +200,11 @@ H5O__link_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, if(len == 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "invalid name length") + /* Make sure that length doesn't exceed buffer size, which could occur + when the file is corrupted */ + if(p + len > p_end) + HGOTO_ERROR(H5E_OHDR, H5E_OVERFLOW, NULL, "name length causes read past end of buffer") + /* Get the link's name */ if(NULL == (lnk->name = (char *)H5MM_malloc(len + 1))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") @@ -218,6 +224,12 @@ H5O__link_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, UINT16DECODE(p, len) if(len == 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "invalid link length") + + /* Make sure that length doesn't exceed buffer size, which could occur + when the file is corrupted */ + if(p + len > p_end) + HGOTO_ERROR(H5E_OHDR, H5E_OVERFLOW, NULL, "name length causes read past end of buffer") + if(NULL == (lnk->u.soft.name = (char *)H5MM_malloc((size_t)len + 1))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") H5MM_memcpy(lnk->u.soft.name, p, len); @@ -238,6 +250,11 @@ H5O__link_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, lnk->u.ud.size = len; if(len > 0) { + /* Make sure that length doesn't exceed buffer size, which could + occur when the file is corrupted */ + if(p + len > p_end) + HGOTO_ERROR(H5E_OHDR, H5E_OVERFLOW, NULL, "name length causes read past end of buffer") + if(NULL == (lnk->u.ud.udata = H5MM_malloc((size_t)len))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") H5MM_memcpy(lnk->u.ud.udata, p, len); diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c index 7e49c4b..064a9b8 100644 --- a/src/H5Pdcpl.c +++ b/src/H5Pdcpl.c @@ -246,7 +246,7 @@ static hbool_t H5P_dcrt_def_layout_init_g = FALSE; static herr_t H5P__dcrt_reg_prop(H5P_genclass_t *pclass) { - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -421,13 +421,13 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size) for(u = 0; u < layout->storage.u.virt.list_nused; u++) { /* Source file name */ tmp_size = HDstrlen(layout->storage.u.virt.list[u].source_file_name) + (size_t)1; - (void)H5MM_memcpy(*pp, layout->storage.u.virt.list[u].source_file_name, tmp_size); + H5MM_memcpy(*pp, layout->storage.u.virt.list[u].source_file_name, tmp_size); *pp += tmp_size; *size += tmp_size; /* Source dataset name */ tmp_size = HDstrlen(layout->storage.u.virt.list[u].source_dset_name) + (size_t)1; - (void)H5MM_memcpy(*pp, layout->storage.u.virt.list[u].source_dset_name, tmp_size); + H5MM_memcpy(*pp, layout->storage.u.virt.list[u].source_dset_name, tmp_size); *pp += tmp_size; *size += tmp_size; @@ -597,14 +597,14 @@ H5P__dcrt_layout_dec(const void **_pp, void *value) tmp_size = HDstrlen((const char *)*pp) + 1; if(NULL == (tmp_layout.storage.u.virt.list[u].source_file_name = (char *)H5MM_malloc(tmp_size))) HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "unable to allocate memory for source file name") - (void)H5MM_memcpy(tmp_layout.storage.u.virt.list[u].source_file_name, *pp, tmp_size); + H5MM_memcpy(tmp_layout.storage.u.virt.list[u].source_file_name, *pp, tmp_size); *pp += tmp_size; /* Source dataset name */ tmp_size = HDstrlen((const char *)*pp) + 1; if(NULL == (tmp_layout.storage.u.virt.list[u].source_dset_name = (char *)H5MM_malloc(tmp_size))) HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "unable to allocate memory for source dataset name") - (void)H5MM_memcpy(tmp_layout.storage.u.virt.list[u].source_dset_name, *pp, tmp_size); + H5MM_memcpy(tmp_layout.storage.u.virt.list[u].source_dset_name, *pp, tmp_size); *pp += tmp_size; /* Source selection */ @@ -2375,7 +2375,7 @@ H5Pget_virtual_vspace(hid_t dcpl_id, size_t idx) /* Get the virtual space */ if(idx >= layout.storage.u.virt.list_nused) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid idx (out of range)") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)") HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc); if(NULL == (space = H5S_copy(layout.storage.u.virt.list[idx].source_dset.virtual_select, FALSE, TRUE))) HGOTO_ERROR(H5E_PLIST, H5E_CANTCOPY, FAIL, "unable to copy virtual selection") @@ -2431,9 +2431,9 @@ H5Pget_virtual_srcspace(hid_t dcpl_id, size_t idx) if(H5D_VIRTUAL != layout.type) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a virtual storage layout") - /* Check idx */ + /* Check index */ if(idx >= layout.storage.u.virt.list_nused) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid idx (out of range)") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)") HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc); /* Attempt to open source dataset and patch extent if extent status is not @@ -2537,7 +2537,7 @@ H5Pget_virtual_filename(hid_t dcpl_id, size_t idx, char *name/*out*/, /* Get the virtual filename */ if(idx >= layout.storage.u.virt.list_nused) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid idx (out of range)") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)") HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc); HDassert(layout.storage.u.virt.list[idx].source_file_name); if(name && (size > 0)) @@ -2600,7 +2600,7 @@ H5Pget_virtual_dsetname(hid_t dcpl_id, size_t idx, char *name/*out*/, /* Get the virtual filename */ if(idx >= layout.storage.u.virt.list_nused) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid idx (out of range)") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)") HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc); HDassert(layout.storage.u.virt.list[idx].source_dset_name); if(name && (size > 0)) diff --git a/src/H5Rint.c b/src/H5Rint.c index 30f3dbb..6dfbf2b 100644 --- a/src/H5Rint.c +++ b/src/H5Rint.c @@ -423,6 +423,10 @@ H5R__destroy(H5R_ref_priv_t *ref) HDassert(ref != NULL); + H5R_LOG_DEBUG("Destroying reference, filename=%s, obj_addr=%s, encode size=%u", + ref->info.obj.filename, H5R__print_token(ref->info.obj.token), + ref->encode_size); + H5MM_xfree(ref->info.obj.filename); ref->info.obj.filename = NULL; @@ -1028,6 +1032,10 @@ H5R__encode(const char *filename, const H5R_ref_priv_t *ref, unsigned char *buf, HGOTO_ERROR(H5E_REFERENCE, H5E_UNSUPPORTED, FAIL, "internal error (unknown reference type)") } /* end switch */ + H5R_LOG_DEBUG("Encoded reference, filename=%s, obj_addr=%s, encode size=%u", + ref->info.obj.filename, H5R__print_token(ref->info.obj.token), + encode_size); + *nalloc = encode_size; done: @@ -88,18 +88,18 @@ H5FL_ARR_DEFINE(hsize_t, H5S_MAX_RANK); /* Dataspace ID class */ static const H5I_class_t H5I_DATASPACE_CLS[1] = {{ - H5I_DATASPACE, /* ID class value */ - 0, /* Class flags */ - 2, /* # of reserved IDs for class */ - (H5I_free_t)H5S_close /* Callback routine for closing objects of this class */ + H5I_DATASPACE, /* ID class value */ + 0, /* Class flags */ + 2, /* # of reserved IDs for class */ + (H5I_free_t)H5S_close /* Callback routine for closing objects of this class */ }}; /* Dataspace selection iterator ID class */ static const H5I_class_t H5I_SPACE_SEL_ITER_CLS[1] = {{ - H5I_SPACE_SEL_ITER, /* ID class value */ - 0, /* Class flags */ - 0, /* # of reserved IDs for class */ - (H5I_free_t)H5S_sel_iter_close /* Callback routine for closing objects of this class */ + H5I_SPACE_SEL_ITER, /* ID class value */ + 0, /* Class flags */ + 0, /* # of reserved IDs for class */ + (H5I_free_t)H5S_sel_iter_close /* Callback routine for closing objects of this class */ }}; @@ -107,7 +107,7 @@ static const H5I_class_t H5I_SPACE_SEL_ITER_CLS[1] = {{ static hbool_t H5S_top_package_initialize_s = FALSE; - + /*-------------------------------------------------------------------------- NAME H5S__init_package -- Initialize interface-specific information @@ -127,11 +127,11 @@ H5S__init_package(void) /* Initialize the atom group for the dataspace IDs */ if(H5I_register_type(H5I_DATASPACE_CLS) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize dataspace ID class") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize dataspace ID class") /* Initialize the atom group for the dataspace selction iterator IDs */ if(H5I_register_type(H5I_SPACE_SEL_ITER_CLS) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize dataspace selection iterator ID class") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize dataspace selection iterator ID class") /* Mark "top" of interface as initialized, too */ H5S_top_package_initialize_s = TRUE; @@ -140,7 +140,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__init_package() */ - + /*-------------------------------------------------------------------------- NAME H5S_top_term_package @@ -162,22 +162,22 @@ done: int H5S_top_term_package(void) { - int n = 0; + int n = 0; FUNC_ENTER_NOAPI_NOINIT_NOERR if(H5S_top_package_initialize_s) { - if(H5I_nmembers(H5I_DATASPACE) > 0) { - (void)H5I_clear_type(H5I_DATASPACE, FALSE, FALSE); + if(H5I_nmembers(H5I_DATASPACE) > 0) { + (void)H5I_clear_type(H5I_DATASPACE, FALSE, FALSE); n++; /*H5I*/ - } /* end if */ + } /* end if */ - if(H5I_nmembers(H5I_SPACE_SEL_ITER) > 0) { - (void)H5I_clear_type(H5I_SPACE_SEL_ITER, FALSE, FALSE); + if(H5I_nmembers(H5I_SPACE_SEL_ITER) > 0) { + (void)H5I_clear_type(H5I_SPACE_SEL_ITER, FALSE, FALSE); n++; /*H5I*/ - } /* end if */ + } /* end if */ - /* Mark "top" of interface as closed */ + /* Mark "top" of interface as closed */ if(0 == n) H5S_top_package_initialize_s = FALSE; } /* end if */ @@ -185,7 +185,7 @@ H5S_top_term_package(void) FUNC_LEAVE_NOAPI(n) } /* end H5S_top_term_package() */ - + /*-------------------------------------------------------------------------- NAME H5S_term_package @@ -209,7 +209,7 @@ H5S_top_term_package(void) int H5S_term_package(void) { - int n = 0; + int n = 0; FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -225,7 +225,7 @@ H5S_term_package(void) /* Destroy the dataspace selection iterator object id group */ n += (H5I_dec_type_ref(H5I_SPACE_SEL_ITER) > 0); - /* Mark interface as closed */ + /* Mark interface as closed */ if(0 == n) H5_PKG_INIT_VAR = FALSE; } /* end if */ @@ -234,7 +234,7 @@ H5S_term_package(void) } /* end H5S_term_package() */ - + /*-------------------------------------------------------------------------- NAME H5S_get_validiated_dataspace @@ -278,13 +278,13 @@ H5S_get_validated_dataspace(hid_t space_id, const H5S_t **space) /* Check for valid selection */ if(H5S_SELECT_VALID(*space) != TRUE) HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "selection + offset not within extent") - } /* end else */ + } done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_get_validated_dataspace() */ - + /*-------------------------------------------------------------------------- NAME H5S_create @@ -362,7 +362,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_create() */ - + /*-------------------------------------------------------------------------- NAME H5Screate @@ -409,16 +409,16 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Screate() */ - + /*------------------------------------------------------------------------- * Function: H5S__extent_release * - * Purpose: Releases all memory associated with a dataspace extent. + * Purpose: Releases all memory associated with a dataspace extent. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Thursday, July 23, 1998 + * Programmer: Quincey Koziol + * Thursday, July 23, 1998 * *------------------------------------------------------------------------- */ @@ -437,19 +437,22 @@ H5S__extent_release(H5S_extent_t *extent) extent->max = H5FL_ARR_FREE(hsize_t, extent->max); } /* end if */ + extent->rank = 0; + extent->nelem = 0; + FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__extent_release() */ - + /*------------------------------------------------------------------------- * Function: H5S_close * - * Purpose: Releases all memory associated with a dataspace. + * Purpose: Releases all memory associated with a dataspace. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ @@ -481,16 +484,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_close() */ - + /*------------------------------------------------------------------------- * Function: H5Sclose * - * Purpose: Release access to a dataspace object. + * Purpose: Release access to a dataspace object. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ @@ -514,69 +517,70 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sclose() */ - + /*------------------------------------------------------------------------- * Function: H5Scopy * - * Purpose: Copies a dataspace. + * Purpose: Copies a dataspace. + * + * Return: Success: ID of the new dataspace * - * Return: Success: ID of the new dataspace - * Failure: Negative + * Failure: H5I_INVALID_HID * - * Programmer: Robb Matzke - * Friday, January 30, 1998 + * Programmer: Robb Matzke + * Friday, January 30, 1998 * *------------------------------------------------------------------------- */ hid_t H5Scopy(hid_t space_id) { - H5S_t *src; - H5S_t *dst = NULL; - hid_t ret_value; + H5S_t *src = NULL; + H5S_t *dst = NULL; + hid_t ret_value = H5I_INVALID_HID; - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API(H5I_INVALID_HID) H5TRACE1("i", "i", space_id); /* Check args */ if(NULL == (src = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "not a dataspace") /* Copy */ if(NULL == (dst = H5S_copy(src, FALSE, TRUE))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to copy dataspace") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, H5I_INVALID_HID, "unable to copy dataspace") /* Atomize */ if((ret_value = H5I_register (H5I_DATASPACE, dst, TRUE)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register dataspace atom") + HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register dataspace atom") done: if(ret_value < 0) if(dst && H5S_close(dst) < 0) - HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release dataspace") + HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, H5I_INVALID_HID, "unable to release dataspace") FUNC_LEAVE_API(ret_value) } /* end H5Scopy() */ - + /*------------------------------------------------------------------------- * Function: H5Sextent_copy * - * Purpose: Copies a dataspace extent. + * Purpose: Copies a dataspace extent. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Thursday, July 23, 1998 + * Programmer: Quincey Koziol + * Thursday, July 23, 1998 * *------------------------------------------------------------------------- */ herr_t H5Sextent_copy(hid_t dst_id,hid_t src_id) { - H5S_t *src; - H5S_t *dst; - herr_t ret_value = SUCCEED; + H5S_t *src; + H5S_t *dst; + herr_t ret_value = SUCCEED; FUNC_ENTER_API(FAIL) H5TRACE2("e", "ii", dst_id, src_id); @@ -595,7 +599,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sextent_copy() */ - + /*------------------------------------------------------------------------- * Function: H5S_extent_copy * @@ -632,16 +636,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_extent_copy() */ - + /*------------------------------------------------------------------------- * Function: H5S__extent_copy_real * - * Purpose: Copies a dataspace extent + * Purpose: Copies a dataspace extent * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Wednesday, June 3, 1998 + * Programmer: Quincey Koziol + * Wednesday, June 3, 1998 * *------------------------------------------------------------------------- */ @@ -701,29 +705,30 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__extent_copy_real() */ - + /*------------------------------------------------------------------------- * Function: H5S_copy * - * Purpose: Copies a dataspace, by copying the extent and selection through - * H5S_extent_copy and H5S_select_copy. If the SHARE_SELECTION flag - * is set, then the selection can be shared between the source and - * destination dataspaces. (This should only occur in situations - * where the destination dataspace will immediately change to a new - * selection) + * Purpose: Copies a dataspace, by copying the extent and selection through + * H5S_extent_copy and H5S_select_copy. If the SHARE_SELECTION flag + * is set, then the selection can be shared between the source and + * destination dataspaces. (This should only occur in situations + * where the destination dataspace will immediately change to a new + * selection) + * + * Return: Success: A pointer to a new copy of SRC * - * Return: Success: A pointer to a new copy of SRC - * Failure: NULL + * Failure: NULL * - * Programmer: Robb Matzke - * Thursday, December 4, 1997 + * Programmer: Robb Matzke + * Thursday, December 4, 1997 * *------------------------------------------------------------------------- */ H5S_t * H5S_copy(const H5S_t *src, hbool_t share_selection, hbool_t copy_max) { - H5S_t *dst = NULL; + H5S_t *dst = NULL; H5S_t *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI(NULL) @@ -750,17 +755,18 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_copy() */ - + /*------------------------------------------------------------------------- * Function: H5S_get_simple_extent_npoints * - * Purpose: Determines how many data points a dataset extent has. + * Purpose: Determines how many data points a dataset extent has. * - * Return: Success: Number of data points in the dataset extent. - * Failure: negative + * Return: Success: Number of data points in the dataset extent. * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Failure: Negative + * + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * * Note: This routine participates in the "Inlining C function pointers" * pattern, don't call it directly, use the appropriate macro @@ -785,17 +791,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_get_simple_extent_npoints() */ - + /*------------------------------------------------------------------------- * Function: H5Sget_simple_extent_npoints * - * Purpose: Determines how many data points a dataset extent has. + * Purpose: Determines how many data points a dataset extent has. * - * Return: Success: Number of data points in the dataset. - * Failure: negative + * Return: Success: Number of data points in the dataset. + * Failure: Negative * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ @@ -803,7 +809,7 @@ hssize_t H5Sget_simple_extent_npoints(hid_t space_id) { H5S_t *ds; - hssize_t ret_value; + hssize_t ret_value; FUNC_ENTER_API(FAIL) H5TRACE1("Hs", "i", space_id); @@ -818,22 +824,22 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_simple_extent_npoints() */ - + /*------------------------------------------------------------------------- * Function: H5S_get_npoints_max * - * Purpose: Determines the maximum number of data points a dataspace may - * have. If the `max' array is null then the maximum number of - * data points is the same as the current number of data points - * without regard to the hyperslab. If any element of the `max' - * array is zero then the maximum possible size is returned. + * Purpose: Determines the maximum number of data points a dataspace may + * have. If the `max' array is null then the maximum number of + * data points is the same as the current number of data points + * without regard to the hyperslab. If any element of the `max' + * array is zero then the maximum possible size is returned. * - * Return: Success: Maximum number of data points the dataspace - * may have. - * Failure: 0 + * Return: Success: Maximum number of data points the dataspace + * may have. + * Failure: 0 * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ @@ -841,7 +847,7 @@ hsize_t H5S_get_npoints_max(const H5S_t *ds) { unsigned u; - hsize_t ret_value = 0; /* Return value */ + hsize_t ret_value = 0; /* Return value */ FUNC_ENTER_NOAPI(0) @@ -863,11 +869,11 @@ H5S_get_npoints_max(const H5S_t *ds) if(H5S_UNLIMITED == ds->extent.max[u]) { ret_value = HSIZET_MAX; break; - } /* end if */ + } else ret_value *= ds->extent.max[u]; - } /* end for */ - } /* end if */ + } + } else for(ret_value = 1, u = 0; u < ds->extent.rank; u++) ret_value *= ds->extent.size[u]; @@ -877,38 +883,38 @@ H5S_get_npoints_max(const H5S_t *ds) default: HDassert("unknown dataspace class" && 0); HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, 0, "internal error (unknown dataspace class)") - } /* end switch */ + } done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_get_npoints_max() */ - + /*------------------------------------------------------------------------- * Function: H5Sget_simple_extent_ndims * - * Purpose: Determines the dimensionality of a dataspace. + * Purpose: Determines the dimensionality of a dataspace. * - * Return: Success: The number of dimensions in a dataspace. - * Failure: Negative + * Return: Success: The number of dimensions in a dataspace. + * Failure: Negative * - * Programmer: Robb Matzke - * Thursday, December 11, 1997 + * Programmer: Robb Matzke + * Thursday, December 11, 1997 * *------------------------------------------------------------------------- */ int H5Sget_simple_extent_ndims(hid_t space_id) { - H5S_t *ds; - int ret_value; /* Return value */ + H5S_t *ds; + int ret_value = -1; - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API((-1)) H5TRACE1("Is", "i", space_id); /* Check args */ if(NULL == (ds = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, (-1), "not a dataspace") ret_value = (int)H5S_GET_EXTENT_NDIMS(ds); @@ -916,18 +922,19 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_simple_extent_ndims() */ - + /*------------------------------------------------------------------------- * Function: H5S_get_simple_extent_ndims * - * Purpose: Returns the number of dimensions in a dataspace. + * Purpose: Returns the number of dimensions in a dataspace. + * + * Return: Success: Non-negative number of dimensions. + * Zero implies a scalar. * - * Return: Success: Non-negative number of dimensions. Zero - * implies a scalar. - * Failure: Negative + * Failure: Negative * - * Programmer: Robb Matzke - * Thursday, December 11, 1997 + * Programmer: Robb Matzke + * hursday, December 11, 1997 * * Note: This routine participates in the "Inlining C function pointers" * pattern, don't call it directly, use the appropriate macro @@ -938,7 +945,7 @@ done: int H5S_get_simple_extent_ndims(const H5S_t *ds) { - int ret_value = -1; /* Return value */ + int ret_value = -1; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -962,35 +969,35 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_get_simple_extent_ndims() */ - + /*------------------------------------------------------------------------- * Function: H5Sget_simple_extent_dims * - * Purpose: Returns the size and maximum sizes in each dimension of - * a dataspace DS through the DIMS and MAXDIMS arguments. + * Purpose: Returns the size and maximum sizes in each dimension of + * a dataspace DS through the DIMS and MAXDIMS arguments. * - * Return: Success: Number of dimensions, the same value as - * returned by H5Sget_simple_extent_ndims(). - * Failure: Negative + * Return: Success: Number of dimensions, the same value as + * returned by H5Sget_simple_extent_ndims(). * - * Programmer: Robb Matzke - * Thursday, December 11, 1997 + * Failure: Negative + * + * Programmer: Robb Matzke + * Thursday, December 11, 1997 * *------------------------------------------------------------------------- */ int -H5Sget_simple_extent_dims(hid_t space_id, hsize_t dims[]/*out*/, - hsize_t maxdims[]/*out*/) +H5Sget_simple_extent_dims(hid_t space_id, hsize_t dims[]/*out*/, hsize_t maxdims[]/*out*/) { - H5S_t *ds; - int ret_value; /* Return value */ + H5S_t *ds; + int ret_value = -1; - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API((-1)) H5TRACE3("Is", "ixx", space_id, dims, maxdims); /* Check args */ if(NULL == (ds = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, (-1), "not a dataspace") ret_value = H5S_get_simple_extent_dims(ds, dims, maxdims); @@ -998,26 +1005,26 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_simple_extent_dims() */ - + /*------------------------------------------------------------------------- * Function: H5S_extent_get_dims * - * Purpose: Returns the size in each dimension of a dataspace. This - * function may not be meaningful for all types of dataspaces. + * Purpose: Returns the size in each dimension of a dataspace. This + * function may not be meaningful for all types of dataspaces. * - * Return: Success: Number of dimensions. Zero implies scalar. - * Failure: Negative + * Return: Success: Number of dimensions. Zero implies scalar. + * Failure: Negative * - * Programmer: Quincey Koziol - * Tuesday, June 30, 2009 + * Programmer: Quincey Koziol + * Tuesday, June 30, 2009 * *------------------------------------------------------------------------- */ int H5S_extent_get_dims(const H5S_extent_t *ext, hsize_t dims[], hsize_t max_dims[]) { - int i; /* Local index variable */ - int ret_value = -1; /* Return value */ + int i; /* Local index variable */ + int ret_value = -1; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -1054,25 +1061,25 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_extent_get_dims() */ - + /*------------------------------------------------------------------------- * Function: H5S_get_simple_extent_dims * - * Purpose: Returns the size in each dimension of a dataspace. This - * function may not be meaningful for all types of dataspaces. + * Purpose: Returns the size in each dimension of a dataspace. This + * function may not be meaningful for all types of dataspaces. * - * Return: Success: Number of dimensions. Zero implies scalar. - * Failure: Negative + * Return: Success: Number of dimensions. Zero implies scalar. + * Failure: Negative * - * Programmer: Robb Matzke - * Thursday, December 11, 1997 + * Programmer: Robb Matzke + * Thursday, December 11, 1997 * *------------------------------------------------------------------------- */ int H5S_get_simple_extent_dims(const H5S_t *ds, hsize_t dims[], hsize_t max_dims[]) { - int ret_value = -1; /* Return value */ + int ret_value = -1; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -1087,17 +1094,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_get_simple_extent_dims() */ - + /*------------------------------------------------------------------------- * Function: H5S_write * - * Purpose: Updates a dataspace by writing a message to an object - * header. + * Purpose: Updates a dataspace by writing a message to an object + * header. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ @@ -1121,17 +1128,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_write() */ - + /*------------------------------------------------------------------------- * Function: H5S_append * - * Purpose: Updates a dataspace by adding a message to an object - * header. + * Purpose: Updates a dataspace by adding a message to an object header. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Tuesday, December 31, 2002 + * Programmer: Quincey Koziol + * Tuesday, December 31, 2002 * *------------------------------------------------------------------------- */ @@ -1155,24 +1161,25 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_append() */ - + /*------------------------------------------------------------------------- * Function: H5S_read * - * Purpose: Reads the dataspace from an object header. + * Purpose: Reads the dataspace from an object header. + * + * Return: Success: Pointer to a new dataspace. * - * Return: Success: Pointer to a new dataspace. - * Failure: NULL + * Failure: NULL * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ H5S_t * H5S_read(const H5O_loc_t *loc) { - H5S_t *ds = NULL; /* Dataspace to return */ + H5S_t *ds = NULL; /* Dataspace to return */ H5S_t *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI(NULL) @@ -1201,7 +1208,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_read() */ - + /*-------------------------------------------------------------------------- NAME H5S__is_simple @@ -1233,7 +1240,7 @@ H5S__is_simple(const H5S_t *sdim) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__is_simple() */ - + /*-------------------------------------------------------------------------- NAME H5Sis_simple @@ -1241,7 +1248,7 @@ H5S__is_simple(const H5S_t *sdim) Check if a dataspace is simple USAGE htri_t H5Sis_simple(space_id) - hid_t space_id; IN: ID of dataspace object to query + hid_t space_id; IN: ID of dataspace object to query RETURNS TRUE/FALSE/FAIL DESCRIPTION @@ -1251,15 +1258,15 @@ H5S__is_simple(const H5S_t *sdim) htri_t H5Sis_simple(hid_t space_id) { - H5S_t *space; /* Dataspace to check */ - htri_t ret_value; /* Return value */ + H5S_t *space; /* Dataspace to check */ + htri_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE1("t", "i", space_id); /* Check args and all the boring stuff. */ if(NULL == (space = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "not a dataspace") + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "not a dataspace") ret_value = H5S__is_simple(space); @@ -1267,7 +1274,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sis_simple() */ - + /*-------------------------------------------------------------------------- NAME H5Sset_extent_simple @@ -1275,11 +1282,11 @@ done: Sets the size of a simple dataspace USAGE herr_t H5Sset_extent_simple(space_id, rank, dims, max) - hid_t space_id; IN: Dataspace object to query - int rank; IN: # of dimensions for the dataspace - const size_t *dims; IN: Size of each dimension for the dataspace - const size_t *max; IN: Maximum size of each dimension for the - dataspace + hid_t space_id; IN: Dataspace object to query + int rank; IN: # of dimensions for the dataspace + const size_t *dims; IN: Size of each dimension for the dataspace + const size_t *max; IN: Maximum size of each dimension for the + dataspace RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -1298,8 +1305,8 @@ herr_t H5Sset_extent_simple(hid_t space_id, int rank, const hsize_t dims[/*rank*/], const hsize_t max[/*rank*/]) { - H5S_t *space; /* Dataspace to modify */ - int u; /* Local counting variable */ + H5S_t *space; /* Dataspace to modify */ + int u; /* Local counting variable */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) @@ -1322,26 +1329,25 @@ H5Sset_extent_simple(hid_t space_id, int rank, const hsize_t dims[/*rank*/], for(u = 0; u < rank; u++) if(max[u] != H5S_UNLIMITED && max[u] < dims[u]) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid maximum dimension size") - } /* end if */ + } /* Do it */ if(H5S_set_extent_simple(space, (unsigned)rank, dims, max) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to set simple extent") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to set simple extent") done: FUNC_LEAVE_API(ret_value) } /* end H5Sset_extent_simple() */ - + /*------------------------------------------------------------------------- * Function: H5S_set_extent_simple * - * Purpose: This is where the real work happens for - * H5Sset_extent_simple(). + * Purpose: This is where the real work happens for H5Sset_extent_simple(). * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, July 8, 1998 * *------------------------------------------------------------------------- @@ -1362,10 +1368,10 @@ H5S_set_extent_simple(H5S_t *space, unsigned rank, const hsize_t *dims, if(H5S__extent_release(&space->extent) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "failed to release previous dataspace extent") - if(rank == 0) { /* scalar variable */ + if(rank == 0) { /* scalar variable */ space->extent.type = H5S_SCALAR; space->extent.nelem = 1; - space->extent.rank = 0; /* set to scalar rank */ + space->extent.rank = 0; /* set to scalar rank */ } /* end if */ else { hsize_t nelem; /* Number of elements in extent */ @@ -1408,91 +1414,90 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_set_extent_simple() */ - + /*------------------------------------------------------------------------- * Function: H5Screate_simple * - * Purpose: Creates a new simple dataspace object and opens it for - * access. The DIMS argument is the size of the simple dataset - * and the MAXDIMS argument is the upper limit on the size of - * the dataset. MAXDIMS may be the null pointer in which case - * the upper limit is the same as DIMS. If an element of - * MAXDIMS is H5S_UNLIMITED then the corresponding dimension is - * unlimited, otherwise no element of MAXDIMS should be smaller - * than the corresponding element of DIMS. + * Purpose: Creates a new simple dataspace object and opens it for + * access. The DIMS argument is the size of the simple dataset + * and the MAXDIMS argument is the upper limit on the size of + * the dataset. MAXDIMS may be the null pointer in which case + * the upper limit is the same as DIMS. If an element of + * MAXDIMS is H5S_UNLIMITED then the corresponding dimension is + * unlimited, otherwise no element of MAXDIMS should be smaller + * than the corresponding element of DIMS. + * + * Return: Success: The ID for the new simple dataspace object. * - * Return: Success: The ID for the new simple dataspace object. - * Failure: Negative + * Failure: H5I_INVALID_HID * - * Programmer: Quincey Koziol - * Tuesday, January 27, 1998 + * Programmer: Quincey Koziol + * Tuesday, January 27, 1998 * *------------------------------------------------------------------------- */ hid_t -H5Screate_simple(int rank, const hsize_t dims[/*rank*/], - const hsize_t maxdims[/*rank*/]) +H5Screate_simple(int rank, const hsize_t dims[/*rank*/], const hsize_t maxdims[/*rank*/]) { - H5S_t *space = NULL; - int i; - hid_t ret_value; /* Return value */ + H5S_t *space = NULL; + int i; + hid_t ret_value = H5I_INVALID_HID; - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API(H5I_INVALID_HID) H5TRACE3("i", "Is*[a0]h*[a0]h", rank, dims, maxdims); /* Check arguments */ if(rank < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "dimensionality cannot be negative") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "dimensionality cannot be negative") if(rank > H5S_MAX_RANK) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "dimensionality is too large") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "dimensionality is too large") /* We allow users to use this function to create scalar or null dataspace. * Check DIMS isn't set when the RANK is 0. */ if(!dims && rank != 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid dataspace information") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "invalid dataspace information") /* Check whether the current dimensions are valid */ for(i = 0; i < rank; i++) { if(H5S_UNLIMITED == dims[i]) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "current dimension must have a specific size, not H5S_UNLIMITED") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "current dimension must have a specific size, not H5S_UNLIMITED") if(maxdims && H5S_UNLIMITED != maxdims[i] && maxdims[i]<dims[i]) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "maxdims is smaller than dims") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "maxdims is smaller than dims") } /* end for */ /* Create the space and set the extent */ if(NULL == (space = H5S_create_simple((unsigned)rank, dims, maxdims))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "can't create simple dataspace") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, H5I_INVALID_HID, "can't create simple dataspace") /* Atomize */ if((ret_value = H5I_register (H5I_DATASPACE, space, TRUE)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register dataspace ID") + HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register dataspace ID") done: if(ret_value < 0) if(space && H5S_close(space) < 0) - HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release dataspace") + HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, H5I_INVALID_HID, "unable to release dataspace") FUNC_LEAVE_API(ret_value) } /* end H5Screate_simple() */ - + /*------------------------------------------------------------------------- * Function: H5S_create_simple * - * Purpose: Internal function to create simple dataspace + * Purpose: Internal function to create simple dataspace * - * Return: Success: The ID for the new simple dataspace object. - * Failure: Negative + * Return: Success: A pointer to a dataspace object + * Failure: NULL * - * Programmer: Quincey Koziol - * Thursday, April 3, 2003 + * Programmer: Quincey Koziol + * Thursday, April 3, 2003 * *------------------------------------------------------------------------- */ H5S_t * -H5S_create_simple(unsigned rank, const hsize_t dims[/*rank*/], - const hsize_t maxdims[/*rank*/]) +H5S_create_simple(unsigned rank, const hsize_t dims[/*rank*/], const hsize_t maxdims[/*rank*/]) { H5S_t *ret_value = NULL; /* Return value */ @@ -1511,20 +1516,19 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_create_simple() */ - + /*------------------------------------------------------------------------- * Function: H5Sencode2 * - * Purpose: Given a dataspace ID, converts the object description + * Purpose: Given a dataspace ID, converts the object description * (including selection) into binary in a buffer. - * The selection will be encoded according to the file - * format setting in fapl. + * The selection will be encoded according to the file + * format setting in the fapl. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: Non-negative + * Failure: Negative * - * Programmer: Raymond Lu - * slu@ncsa.uiuc.edu + * Programmer: Raymond Lu * July 14, 2004 * *------------------------------------------------------------------------- @@ -1540,33 +1544,30 @@ H5Sencode2(hid_t obj_id, void *buf, size_t *nalloc, hid_t fapl_id) /* Check argument and retrieve object */ if(NULL == (dspace = (H5S_t *)H5I_object_verify(obj_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") - /* Verify access property list and set up collective metadata if appropriate */ + /* Verify access property list and set up collective metadata if appropriate */ if(H5CX_set_apl(&fapl_id, H5P_CLS_FACC, H5I_INVALID_HID, TRUE) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTSET, H5I_INVALID_HID, "can't set access property list info") - if(H5S_encode(dspace, (unsigned char **)&buf, nalloc) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTENCODE, FAIL, "can't encode dataspace") done: FUNC_LEAVE_API(ret_value) -} /* H5Sencode2() */ - +} /* end H5Sencode2() */ + /*------------------------------------------------------------------------- * Function: H5S_encode * - * Purpose: Private function for H5Sencode. Converts an object + * Purpose: Private function for H5Sencode. Converts an object * description for dataspace and its selection into binary * in a buffer. * - * Return: Success: non-negative - * Failure: negative + * Return: SUCCEED/FAIL * - * Programmer: Raymond Lu - * slu@ncsa.uiuc.edu + * Programmer: Raymond Lu * July 14, 2004 * *------------------------------------------------------------------------- @@ -1584,15 +1585,15 @@ H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc) /* Allocate "fake" file structure */ if(NULL == (f = H5F_fake_alloc((uint8_t)0))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate fake file struct") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate fake file struct") /* Find out the size of buffer needed for extent */ if((extent_size = H5O_msg_raw_size(f, H5O_SDSPACE_ID, TRUE, obj)) == 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace size") + HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace size") /* Find out the size of buffer needed for selection */ if((sselect_size = H5S_SELECT_SERIAL_SIZE(obj)) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace selection size") + HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace selection size") H5_CHECKED_ASSIGN(select_size, size_t, sselect_size, hssize_t); /* Verify the size of buffer. If it's not big enough, simply return the @@ -1633,18 +1634,18 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_encode() */ - + /*------------------------------------------------------------------------- * Function: H5Sdecode * - * Purpose: Decode a binary object description of dataspace and + * Purpose: Decode a binary object description of dataspace and * return a new object handle. * - * Return: Success: dataspace ID(non-negative) - * Failure: negative + * Return: Success: dataspace ID(non-negative) + * + * Failure: H5I_INVALID_HID * - * Programmer: Raymond Lu - * slu@ncsa.uiuc.edu + * Programmer: Raymond Lu * July 14, 2004 * *------------------------------------------------------------------------- @@ -1655,35 +1656,35 @@ H5Sdecode(const void *buf) H5S_t *ds; hid_t ret_value; - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API(H5I_INVALID_HID) H5TRACE1("i", "*x", buf); if(buf == NULL) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "empty buffer") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "empty buffer") if((ds = H5S_decode((const unsigned char **)&buf)) == NULL) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDECODE, FAIL, "can't decode object") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDECODE, H5I_INVALID_HID, "can't decode object") /* Register the type and return the ID */ if((ret_value = H5I_register(H5I_DATASPACE, ds, TRUE)) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTREGISTER, FAIL, "unable to register dataspace") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register dataspace") done: FUNC_LEAVE_API(ret_value) } /* end H5Sdecode() */ - + /*------------------------------------------------------------------------- * Function: H5S_decode * - * Purpose: Private function for H5Sdecode. Reconstructs a binary + * Purpose: Private function for H5Sdecode. Reconstructs a binary * description of dataspace and returns a new object handle. * - * Return: Success: dataspace ID(non-negative) - * Failure: negative + * Return: Success: Pointer to a dataspace buffer + * + * Failure: NULL * - * Programmer: Raymond Lu - * slu@ncsa.uiuc.edu + * Programmer: Raymond Lu * July 14, 2004 * *------------------------------------------------------------------------- @@ -1703,18 +1704,18 @@ H5S_decode(const unsigned char **p) /* Decode the type of the information */ if(*pp++ != H5O_SDSPACE_ID) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADMESG, NULL, "not an encoded dataspace") + HGOTO_ERROR(H5E_DATASPACE, H5E_BADMESG, NULL, "not an encoded dataspace") /* Decode the version of the dataspace information */ if(*pp++ != H5S_ENCODE_VERSION) - HGOTO_ERROR(H5E_DATASPACE, H5E_VERSION, NULL, "unknown version of encoded dataspace") + HGOTO_ERROR(H5E_DATASPACE, H5E_VERSION, NULL, "unknown version of encoded dataspace") /* Decode the "size of size" information */ sizeof_size = *pp++; /* Allocate "fake" file structure */ if(NULL == (f = H5F_fake_alloc(sizeof_size))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, NULL, "can't allocate fake file struct") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, NULL, "can't allocate fake file struct") /* Decode size of extent information */ UINT32DECODE(pp, extent_size); @@ -1729,7 +1730,7 @@ H5S_decode(const unsigned char **p) if(NULL == (ds = H5FL_CALLOC(H5S_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for dataspace conversion path table") if(NULL == H5O_msg_copy(H5O_SDSPACE_ID, extent, &(ds->extent))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, NULL, "can't copy object") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, NULL, "can't copy object") if(H5S__extent_release(extent) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTDELETE, NULL, "can't release previous dataspace") extent = H5FL_FREE(H5S_extent_t, extent); @@ -1754,17 +1755,18 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_decode() */ - + /*------------------------------------------------------------------------- * Function: H5S_get_simple_extent_type * - * Purpose: Internal function for retrieving the type of extent for a dataspace object + * Purpose: Internal function for retrieving the type of extent for a dataspace object + * + * Return: Success: The class of the dataspace object * - * Return: Success: The class of the dataspace object - * Failure: N5S_NO_CLASS + * Failure: N5S_NO_CLASS * - * Programmer: Quincey Koziol - * Thursday, September 28, 2000 + * Programmer: Quincey Koziol + * Thursday, September 28, 2000 * * Note: This routine participates in the "Inlining C function pointers" * pattern, don't call it directly, use the appropriate macro @@ -1775,7 +1777,7 @@ done: H5S_class_t H5S_get_simple_extent_type(const H5S_t *space) { - H5S_class_t ret_value = H5S_NO_CLASS; /* Return value */ + H5S_class_t ret_value = H5S_NO_CLASS; /* Return value */ FUNC_ENTER_NOAPI(H5S_NO_CLASS) @@ -1787,25 +1789,26 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_get_simple_extent_type() */ - + /*------------------------------------------------------------------------- * Function: H5Sget_simple_extent_type * - * Purpose: Retrieves the type of extent for a dataspace object + * Purpose: Retrieves the type of extent for a dataspace object * - * Return: Success: The class of the dataspace object - * Failure: N5S_NO_CLASS + * Return: Success: The class of the dataspace object * - * Programmer: Quincey Koziol - * Thursday, July 23, 1998 + * Failure: N5S_NO_CLASS + * + * Programmer: Quincey Koziol + * Thursday, July 23, 1998 * *------------------------------------------------------------------------- */ H5S_class_t H5Sget_simple_extent_type(hid_t sid) { - H5S_t *space; - H5S_class_t ret_value; /* Return value */ + H5S_t *space; + H5S_class_t ret_value; /* Return value */ FUNC_ENTER_API(H5S_NO_CLASS) H5TRACE1("Sc", "i", sid); @@ -1820,7 +1823,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_simple_extent_type() */ - + /*-------------------------------------------------------------------------- NAME H5Sset_extent_none @@ -1828,18 +1831,18 @@ done: Resets the extent of a dataspace back to "none" USAGE herr_t H5Sset_extent_none(space_id) - hid_t space_id; IN: Dataspace object to reset + hid_t space_id; IN: Dataspace object to reset RETURNS Non-negative on success/Negative on failure DESCRIPTION - This function resets the type of a dataspace back to "none" with no + This function resets the type of a dataspace to H5S_NULL with no extent information stored for the dataspace. --------------------------------------------------------------------------*/ herr_t H5Sset_extent_none(hid_t space_id) { - H5S_t *space; /* Dataspace to modify */ - herr_t ret_value = SUCCEED; /* Return value */ + H5S_t *space; /* Dataspace to modify */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE1("e", "i", space_id); @@ -1852,22 +1855,21 @@ H5Sset_extent_none(hid_t space_id) if(H5S__extent_release(&space->extent) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTDELETE, FAIL, "can't release previous dataspace") - space->extent.type = H5S_NO_CLASS; + space->extent.type = H5S_NULL; done: FUNC_LEAVE_API(ret_value) } /* end H5Sset_extent_none() */ - + /*------------------------------------------------------------------------- * Function: H5S_set_extent * * Purpose: Modify the dimensions of a dataspace. * - * Return: Success: Non-negative - * Failure: Negative + * Return: TRUE/FALSE/FAIL * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Programmer: Pedro Vicente * March 13, 2002 * *------------------------------------------------------------------------- @@ -1905,7 +1907,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_set_extent() */ - + /*------------------------------------------------------------------------- * Function: H5S_has_extent * @@ -1938,7 +1940,7 @@ H5S_has_extent(const H5S_t *ds) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_has_extent() */ - + /*------------------------------------------------------------------------- * Function: H5S_set_extent_real * @@ -1947,7 +1949,7 @@ H5S_has_extent(const H5S_t *ds) * Return: Success: Non-negative * Failure: Negative * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Programmer: Pedro Vicente * March 13, 2002 * *------------------------------------------------------------------------- @@ -1985,25 +1987,27 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_set_extent_real() */ - + /*------------------------------------------------------------------------- * Function: H5Sextent_equal * - * Purpose: Determines if two dataspace extents are equal. + * Purpose: Determines if two dataspace extents are equal. + * + * Return: Success: TRUE if equal, FALSE if unequal * - * Return: Success: TRUE if equal, FALSE if unequal - * Failure: Negative + * Failure: FAIL * - * Programmer: Quincey Koziol - * Monday, October 24, 2005 + * Programmer: Quincey Koziol + * Monday, October 24, 2005 * *------------------------------------------------------------------------- */ htri_t H5Sextent_equal(hid_t space1_id, hid_t space2_id) { - const H5S_t *ds1, *ds2; /* Dataspaces to compare */ - htri_t ret_value; /* Return value */ + const H5S_t *ds1; /* Dataspaces to compare */ + const H5S_t *ds2; + htri_t ret_value; FUNC_ENTER_API(FAIL) H5TRACE2("t", "ii", space1_id, space2_id); @@ -2011,17 +2015,17 @@ H5Sextent_equal(hid_t space1_id, hid_t space2_id) /* check args */ if(NULL == (ds1 = (const H5S_t *)H5I_object_verify(space1_id, H5I_DATASPACE)) || NULL == (ds2 = (const H5S_t *)H5I_object_verify(space2_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") /* Check dataspaces for extent's equality */ if((ret_value = H5S_extent_equal(ds1, ds2)) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "dataspace comparison failed") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "dataspace comparison failed") done: FUNC_LEAVE_API(ret_value) } /* end H5Sextent_equal() */ - + /*-------------------------------------------------------------------------- NAME H5S_extent_equal @@ -2082,17 +2086,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_extent_equal() */ - + /*------------------------------------------------------------------------- * Function: H5S_extent_nelem * - * Purpose: Determines how many elements a dataset extent describes. + * Purpose: Determines how many elements a dataset extent describes. * - * Return: Success: Number of data points in the dataset extent. - * Failure: negative + * Return: Success: Number of data points in the dataset extent. + * Failure: Negative * - * Programmer: Quincey Koziol - * Thursday, November 30, 2006 + * Programmer: Quincey Koziol + * Thursday, November 30, 2006 * *------------------------------------------------------------------------- */ @@ -2108,7 +2112,7 @@ H5S_extent_nelem(const H5S_extent_t *ext) FUNC_LEAVE_NOAPI(ext->nelem) } /* end H5S_extent_nelem() */ - + /*------------------------------------------------------------------------- * Function: H5S_set_version * diff --git a/src/H5Sall.c b/src/H5Sall.c index 8290ae2..9026e7c 100644 --- a/src/H5Sall.c +++ b/src/H5Sall.c @@ -29,7 +29,7 @@ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ +#include "H5Eprivate.h" /* Error handling */ #include "H5Iprivate.h" /* ID Functions */ #include "H5Spkg.h" /* Dataspace functions */ #include "H5VMprivate.h" /* Vector functions */ @@ -599,7 +599,7 @@ H5S__all_serial_size(const H5S_t H5_ATTR_UNUSED *space) PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_all_serialize(space, p) + herr_t H5S__all_serialize(space, p) const H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of @@ -627,8 +627,8 @@ H5S__all_serialize(const H5S_t *space, uint8_t **p) HDassert(pp); /* Store the preamble information */ - UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(pp, (uint32_t)H5S_ALL_VERSION_1); /* Store the version number */ + UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(pp, (uint32_t)H5S_ALL_VERSION_1); /* Store the version number */ UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ UINT32ENCODE(pp, (uint32_t)0); /* Store the additional information length */ diff --git a/src/H5Sdbg.c b/src/H5Sdbg.c index 8171191..32f5295 100644 --- a/src/H5Sdbg.c +++ b/src/H5Sdbg.c @@ -13,11 +13,12 @@ /*------------------------------------------------------------------------- * - * Created: H5Sdbg.c - * Jul 24 2007 - * Quincey Koziol <koziol@hdfgroup.org> + * Created: H5Sdbg.c + * Quincey Koziol + * Jul 24 2007 + * * - * Purpose: Dump debugging information about a dataspace + * Purpose: Dump debugging information about a dataspace * *------------------------------------------------------------------------- */ @@ -32,9 +33,9 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Spkg.h" /* Dataspaces */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Spkg.h" /* Dataspaces */ /****************/ @@ -74,13 +75,13 @@ /*------------------------------------------------------------------------- - * Function: H5S_debug + * Function: H5S_debug * - * Purpose: Prints debugging information about a dataspace. + * Purpose: Prints debugging information about a dataspace. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Tuesday, July 21, 1998 * *------------------------------------------------------------------------- @@ -88,7 +89,7 @@ herr_t H5S_debug(H5F_t *f, const void *_mesg, FILE *stream, int indent, int fwidth) { - const H5S_t *mesg = (const H5S_t*)_mesg; + const H5S_t *mesg = (const H5S_t*)_mesg; FUNC_ENTER_NOAPI_NOINIT_NOERR diff --git a/src/H5Shyper.c b/src/H5Shyper.c index b352374..9f75785 100644 --- a/src/H5Shyper.c +++ b/src/H5Shyper.c @@ -12,10 +12,10 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> + * Programmer: Quincey Koziol * Thursday, June 18, 1998 * - * Purpose: Hyperslab selection dataspace I/O functions. + * Purpose: Hyperslab selection dataspace I/O functions. */ /****************/ @@ -30,8 +30,8 @@ /***********/ #include "H5private.h" /* Generic Functions */ #include "H5CXprivate.h" /* API Contexts */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FLprivate.h" /* Free Lists */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FLprivate.h" /* Free Lists */ #include "H5Iprivate.h" /* ID Functions */ #include "H5MMprivate.h" /* Memory management */ #include "H5Spkg.h" /* Dataspace functions */ @@ -304,7 +304,7 @@ H5FL_EXTERN(H5S_sel_iter_t); static uint64_t H5S_hyper_op_gen_g = 1; -/* Uncomment this, to provide the debugging routines for printing selection info */ +/* Uncomment this to provide the debugging routines for printing selection info */ /* #define H5S_HYPER_DEBUG */ #ifdef H5S_HYPER_DEBUG static herr_t @@ -385,7 +385,7 @@ H5S__hyper_print_diminfo(FILE *f, const H5S_t *space) FUNC_LEAVE_NOAPI(SUCCEED) } - + /*-------------------------------------------------------------------------- NAME H5S__hyper_print_spans_dfs @@ -531,7 +531,7 @@ H5S__hyper_print_space_dfs(FILE *f, const H5S_t *space) } /* end H5S__hyper_print_space_dfs() */ #endif /* H5S_HYPER_DEBUG */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_get_op_gen * @@ -555,15 +555,15 @@ H5S__hyper_get_op_gen(void) FUNC_LEAVE_NOAPI(H5S_hyper_op_gen_g++); } /* end H5S__hyper_op_gen() */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_iter_init * - * Purpose: Initializes iteration information for hyperslab selection. + * Purpose: Initializes iteration information for hyperslab selection. * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, February 24, 2001 * * Notes: If the 'iter->elmt_size' field is set to zero, the regular @@ -794,16 +794,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_iter_init() */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_iter_coords * - * Purpose: Retrieve the current coordinates of iterator for current + * Purpose: Retrieve the current coordinates of iterator for current * selection * - * Return: Non-negative on success, negative on failure + * Return: Non-negative on success, negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, April 22, 2003 * *------------------------------------------------------------------------- @@ -879,16 +879,16 @@ H5S__hyper_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_coords() */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_iter_block * - * Purpose: Retrieve the current block of iterator for current + * Purpose: Retrieve the current block of iterator for current * selection * - * Return: Non-negative on success, negative on failure + * Return: Non-negative on success, negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Monday, June 2, 2003 * * Notes: This routine assumes that the iterator is always located at @@ -916,28 +916,28 @@ H5S__hyper_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end) for(u = 0; u < iter->rank; u++) { start[u] = iter->u.hyp.off[u]; end[u] = (start[u] + iter->u.hyp.diminfo[u].block) - 1; - } /* end for */ + } } /* end if */ else { /* Copy the start & end of the block */ for(u = 0; u < iter->rank; u++) { start[u] = iter->u.hyp.span[u]->low; end[u] = iter->u.hyp.span[u]->high; - } /* end for */ + } } /* end else */ FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_block() */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_iter_nelmts * - * Purpose: Return number of elements left to process in iterator + * Purpose: Return number of elements left to process in iterator * - * Return: Non-negative number of elements on success, zero on failure + * Return: Non-negative number of elements on success, zero on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * *------------------------------------------------------------------------- @@ -953,7 +953,7 @@ H5S__hyper_iter_nelmts(const H5S_sel_iter_t *iter) FUNC_LEAVE_NOAPI(iter->elmt_left) } /* end H5S__hyper_iter_nelmts() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_iter_has_next_block @@ -1009,17 +1009,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_iter_has_next_block() */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_iter_next * - * Purpose: Moves a hyperslab iterator to the beginning of the next sequence - * of elements to read. Handles walking off the end in all dimensions. + * Purpose: Moves a hyperslab iterator to the beginning of the next sequence + * of elements to read. Handles walking off the end in all dimensions. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Friday, September 8, 2000 * *------------------------------------------------------------------------- @@ -1216,17 +1216,17 @@ H5S__hyper_iter_next(H5S_sel_iter_t *iter, size_t nelem) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_next() */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_iter_next_block * - * Purpose: Moves a hyperslab iterator to the beginning of the next sequence - * of elements to read. Handles walking off the end in all dimensions. + * Purpose: Moves a hyperslab iterator to the beginning of the next sequence + * of elements to read. Handles walking off the end in all dimensions. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 3, 2003 * *------------------------------------------------------------------------- @@ -1391,7 +1391,7 @@ H5S__hyper_iter_next_block(H5S_sel_iter_t *iter) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_next_block() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_iter_get_seq_list_gen @@ -1409,7 +1409,7 @@ H5S__hyper_iter_next_block(H5S_sel_iter_t *iter) hsize_t *off; OUT: Array of offsets size_t *len; OUT: Array of lengths RETURNS - Non-negative on success/Negative on failure. + Non-negative on success/Negative on failure DESCRIPTION Use the selection in the dataspace to generate a list of byte offsets and lengths for the region(s) selected. Start/Restart from the position in the @@ -1756,7 +1756,7 @@ H5S__hyper_iter_get_seq_list_gen(H5S_sel_iter_t *iter, size_t maxseq, size_t max /* Work back up through the dimensions */ while(curr_dim >= 0) { /* Reset the current span */ - curr_span = ispan[curr_dim]; + curr_span = ispan[curr_dim]; /* Increment absolute position */ abs_arr[curr_dim]++; @@ -1843,7 +1843,7 @@ H5S__hyper_iter_get_seq_list_gen(H5S_sel_iter_t *iter, size_t maxseq, size_t max FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_get_seq_list_gen() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_iter_get_seq_list_opt @@ -2110,15 +2110,15 @@ H5S__hyper_iter_get_seq_list_opt(H5S_sel_iter_t *iter, size_t maxseq, size_t max /* Read in data until an entire sequence can't be written out any longer */ while(curr_rows > 0) { -#define DUFF_GUTS \ -/* Store the sequence information */ \ -off[curr_seq] = loc; \ -len[curr_seq] = actual_bytes; \ - \ -/* Increment sequence count */ \ -curr_seq++; \ - \ -/* Increment information to reflect block just processed */ \ +#define DUFF_GUTS \ +/* Store the sequence information */ \ +off[curr_seq] = loc; \ +len[curr_seq] = actual_bytes; \ + \ +/* Increment sequence count */ \ +curr_seq++; \ + \ +/* Increment information to reflect block just processed */ \ loc += fast_dim_buf_off; #ifdef NO_DUFFS_DEVICE @@ -2287,7 +2287,7 @@ loc += fast_dim_buf_off; FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_get_seq_list_opt() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_iter_get_seq_list_single @@ -2565,7 +2565,7 @@ H5S__hyper_iter_get_seq_list_single(H5S_sel_iter_t *iter, size_t maxseq, size_t FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_get_seq_list_single() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_iter_get_seq_list @@ -2574,7 +2574,6 @@ H5S__hyper_iter_get_seq_list_single(H5S_sel_iter_t *iter, size_t maxseq, size_t USAGE herr_t H5S__hyper_iter_get_seq_list(iter,maxseq,maxelem,nseq,nelem,off,len) H5S_t *space; IN: Dataspace containing selection to use. - unsigned flags; IN: Flags for extra information about operation H5S_sel_iter_t *iter; IN/OUT: Selection iterator describing last position of interest in selection. size_t maxseq; IN: Maximum number of sequences to generate @@ -2727,7 +2726,7 @@ H5S__hyper_iter_get_seq_list(H5S_sel_iter_t *iter, size_t maxseq, FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_iter_get_seq_list() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_iter_release @@ -2760,7 +2759,7 @@ H5S__hyper_iter_release(H5S_sel_iter_t *iter) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_release() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_new_span @@ -2808,7 +2807,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_new_span() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_new_span_info @@ -2851,7 +2850,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_new_span_info() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_copy_span_helper @@ -2947,7 +2946,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_copy_span_helper() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_copy_span @@ -2992,7 +2991,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_copy_span() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_cmp_spans @@ -3013,8 +3012,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static H5_ATTR_PURE hbool_t -H5S__hyper_cmp_spans(const H5S_hyper_span_info_t *span_info1, - const H5S_hyper_span_info_t *span_info2) +H5S__hyper_cmp_spans(const H5S_hyper_span_info_t *span_info1, const H5S_hyper_span_info_t *span_info2) { hbool_t ret_value = TRUE; /* Return value */ @@ -3088,7 +3086,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_cmp_spans() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_free_span_info @@ -3145,7 +3143,7 @@ H5S__hyper_free_span_info(H5S_hyper_span_info_t *span_info) FUNC_LEAVE_NOAPI_VOID } /* end H5S__hyper_free_span_info() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_free_span @@ -3183,7 +3181,7 @@ H5S__hyper_free_span(H5S_hyper_span_t *span) FUNC_LEAVE_NOAPI_VOID } /* end H5S__hyper_free_span() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_copy @@ -3258,7 +3256,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_copy() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_is_valid @@ -3317,7 +3315,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_is_valid() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_span_nblocks_helper @@ -3385,7 +3383,7 @@ H5S__hyper_span_nblocks_helper(H5S_hyper_span_info_t *spans, unsigned op_info_i, FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_span_nblocks_helper() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_span_nblocks @@ -3426,7 +3424,7 @@ H5S__hyper_span_nblocks(H5S_hyper_span_info_t *spans) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_span_nblocks() */ - + /*-------------------------------------------------------------------------- NAME H5S__get_select_hyper_nblocks @@ -3463,7 +3461,7 @@ H5S__get_select_hyper_nblocks(const H5S_t *space, hbool_t app_ref) /* Check each dimension */ for(ret_value = 1, u = 0; u < space->extent.rank; u++) ret_value *= (app_ref ? space->select.sel_info.hslab->diminfo.app[u].count : - space->select.sel_info.hslab->diminfo.opt[u].count); + space->select.sel_info.hslab->diminfo.opt[u].count); } /* end if */ else ret_value = H5S__hyper_span_nblocks(space->select.sel_info.hslab->span_lst); @@ -3471,7 +3469,7 @@ H5S__get_select_hyper_nblocks(const H5S_t *space, hbool_t app_ref) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__get_select_hyper_nblocks() */ - + /*-------------------------------------------------------------------------- NAME H5Sget_select_hyper_nblocks @@ -3512,7 +3510,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_select_hyper_nblocks() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_get_enc_size_real @@ -3707,13 +3705,13 @@ H5S__hyper_get_version_enc_size(const H5S_t *space, hsize_t block_count, uint32_ default: HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "unknown hyperslab selection version") break; - } /* end switch */ + } done: FUNC_LEAVE_NOAPI(ret_value) } /* H5S__hyper_get_version_enc_size() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_serial_size @@ -3738,14 +3736,15 @@ H5S__hyper_serial_size(const H5S_t *space) { hsize_t block_count = 0; /* block counter for regular hyperslabs */ uint32_t version; /* Version number */ - uint8_t enc_size; /* Encoded size of hyerslab selection info */ + uint8_t enc_size; /* Encoded size of hyperslab selection info */ hssize_t ret_value = -1; /* return value */ FUNC_ENTER_STATIC HDassert(space); - if(space->select.sel_info.hslab->unlim_dim < 0) /* ! H5S_UNLIMITED */ + /* Determine the number of blocks */ + if(space->select.sel_info.hslab->unlim_dim < 0) /* ! H5S_UNLIMITED */ block_count = H5S__get_select_hyper_nblocks(space, FALSE); /* Determine the version and the encoded size */ @@ -3787,7 +3786,7 @@ H5S__hyper_serial_size(const H5S_t *space) */ HDassert(enc_size == 8); ret_value = (hssize_t)17 + ((hssize_t)4 * (hssize_t)8 * (hssize_t)space->extent.rank); - } /* end else-if */ + } else { HDassert(version == H5S_HYPER_VERSION_1); HDassert(enc_size == 4); @@ -3807,7 +3806,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_serial_size() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_serialize_helper @@ -3928,14 +3927,14 @@ H5S__hyper_serialize_helper(const H5S_hyper_span_info_t *spans, FUNC_LEAVE_NOAPI_VOID } /* end H5S__hyper_serialize_helper() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_serialize PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_hyper_serialize(space, p) + herr_t H5S__hyper_serialize(space, p) const H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of @@ -3958,7 +3957,7 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p) hsize_t offset[H5S_MAX_RANK]; /* Offset of element in dataspace */ hsize_t start[H5S_MAX_RANK]; /* Location of start of hyperslab */ hsize_t end[H5S_MAX_RANK]; /* Location of end of hyperslab */ - uint8_t *pp; /* Local pointer for decoding */ + uint8_t *pp; /* Local pointer for encoding */ uint8_t *lenp = NULL; /* pointer to length location for later storage */ uint32_t len = 0; /* number of bytes used */ uint32_t version; /* Version number */ @@ -3969,7 +3968,7 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p) unsigned u; /* Local counting variable */ hbool_t complete = FALSE; /* Whether we are done with the iteration */ hbool_t is_regular; /* Whether selection is regular */ - uint8_t enc_size; + uint8_t enc_size; /* Encoded size */ herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_STATIC @@ -3984,7 +3983,8 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p) ndims = space->extent.rank; diminfo = space->select.sel_info.hslab->diminfo.opt; - if(space->select.sel_info.hslab->unlim_dim < 0) /* ! H5S_UNLIMITED */ + /* Calculate the # of blocks */ + if(space->select.sel_info.hslab->unlim_dim < 0) /* ! H5S_UNLIMITED */ block_count = H5S__get_select_hyper_nblocks(space, FALSE); /* Determine the version and the encoded size */ @@ -4120,7 +4120,7 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p) tmp_count[fast_dim]--; } /* end while */ - /* Work on other dimensions if necessary */ + /* Work on other dimensions if necessary */ if(fast_dim > 0) { int temp_dim; /* Temporary rank holder */ @@ -4141,7 +4141,7 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p) if(temp_dim == 0) complete = TRUE; - /* Reset the block count in this dimension */ + /* Reset the block count in this dimension */ tmp_count[temp_dim] = diminfo[temp_dim].count; /* Wrapped a dimension, go up to next dimension */ @@ -4204,7 +4204,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_serialize() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_deserialize @@ -4284,7 +4284,7 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p) /* Check for unknown flags */ if(flags & ~H5S_SELECT_FLAG_BITS) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTLOAD, FAIL, "unknown flag for selection") - } /* end if */ + } else { /* Skip over the remainder of the header */ pp += 8; @@ -4300,7 +4300,7 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p) if(!*space) { /* Patch the rank of the allocated dataspace */ - (void)HDmemset(dims, 0, (size_t)rank * sizeof(dims[0])); + HDmemset(dims, 0, (size_t)rank * sizeof(dims[0])); if(H5S_set_extent_simple(tmp_space, rank, dims, NULL) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't set dimensions") } /* end if */ @@ -4315,7 +4315,7 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p) /* Sanity checks */ HDassert(H5S_UNLIMITED == HSIZE_UNDEF); - HDassert(version >= 2); + HDassert(version >= H5S_HYPER_VERSION_2); /* Decode start/stride/block/count */ switch(enc_size) { @@ -4383,7 +4383,7 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p) size_t num_elem; /* Number of elements in selection */ unsigned v; /* Local counting variable */ - /* decode the number of blocks */ + /* Decode the number of blocks */ switch(enc_size) { case H5S_SELECT_INFO_ENC_SIZE_2: UINT16DECODE(pp, num_elem); @@ -4461,7 +4461,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_deserialize() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_span_blocklist @@ -4566,7 +4566,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_span_blocklist() */ - + /*-------------------------------------------------------------------------- NAME H5S__get_select_hyper_blocklist @@ -4748,7 +4748,7 @@ H5S__get_select_hyper_blocklist(H5S_t *space, hsize_t startblock, FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__get_select_hyper_blocklist() */ - + /*-------------------------------------------------------------------------- NAME H5Sget_select_hyper_blocklist @@ -4761,7 +4761,7 @@ H5S__get_select_hyper_blocklist(H5S_t *space, hsize_t startblock, hsize_t numblocks; IN: Number of hyperslab blocks to get hsize_t buf[]; OUT: List of hyperslab blocks selected RETURNS - Non-negative on success/Negative on failure + Non-negative on success, negative on failure DESCRIPTION Puts a list of the hyperslab blocks into the user's buffer. The blocks start with the 'startblock'th block in the list of blocks and put @@ -4809,7 +4809,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_select_hyper_blocklist() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_bounds @@ -4890,7 +4890,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_bounds() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_offset @@ -4999,7 +4999,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_offset() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_unlim_dim @@ -5026,7 +5026,7 @@ H5S__hyper_unlim_dim(const H5S_t *space) FUNC_LEAVE_NOAPI(space->select.sel_info.hslab->unlim_dim); } /* end H5S__hyper_unlim_dim() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_num_elem_non_unlim @@ -5068,7 +5068,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_num_elem_non_unlim() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_is_contiguous @@ -5254,7 +5254,7 @@ H5S__hyper_is_contiguous(const H5S_t *space) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_is_contiguous() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_is_single @@ -5327,7 +5327,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_is_single() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_is_regular @@ -5372,7 +5372,7 @@ H5S__hyper_is_regular(const H5S_t *space) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_is_regular() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_spans_shape_same_helper @@ -5724,7 +5724,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_shape_same() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_release @@ -5765,7 +5765,7 @@ H5S__hyper_release(H5S_t *space) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_release() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_coord_to_span @@ -5828,7 +5828,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_coord_to_span() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_add_span_element_helper @@ -6494,7 +6494,7 @@ H5S__hyper_adjust_u(H5S_t *space, const hsize_t *offset) if(0 != offset[u]) { non_zero_offset = TRUE; break; - } /* end if */ + } /* Only perform operation if the offset is non-zero */ if(non_zero_offset) { @@ -7060,7 +7060,7 @@ H5S__hyper_adjust_s(H5S_t *space, const hssize_t *offset) * simultaneous operations */ H5S__hyper_adjust_s_helper(space->select.sel_info.hslab->span_lst, space->extent.rank, offset, 0, op_gen); } /* end if */ - } /* end if */ + } done: FUNC_LEAVE_NOAPI(ret_value) @@ -9020,7 +9020,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_generate_spans() */ - + /*-------------------------------------------------------------------------- NAME H5S__check_spans_overlap @@ -9404,11 +9404,11 @@ done: /*------------------------------------------------------------------------- * Function: H5S__generate_hyperlab * - * Purpose: Generate hyperslab information from H5S_select_hyperslab() + * Purpose: Generate hyperslab information from H5S_select_hyperslab() * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, September 12, 2000 * *------------------------------------------------------------------------- @@ -9824,11 +9824,11 @@ done: /*------------------------------------------------------------------------- * Function: H5S_select_hyperslab * - * Purpose: Internal version of H5Sselect_hyperslab(). + * Purpose: Internal version of H5Sselect_hyperslab(). * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Wednesday, January 10, 2001 * *------------------------------------------------------------------------- @@ -10495,9 +10495,9 @@ hid_t H5Scombine_hyperslab(hid_t space_id, H5S_seloper_t op, const hsize_t start[], const hsize_t stride[], const hsize_t count[], const hsize_t block[]) { - H5S_t *space; /* Dataspace to modify selection of */ - H5S_t *new_space = NULL; /* New dataspace created */ - hid_t ret_value; /* Return value */ + H5S_t *space; /* Dataspace to modify selection of */ + H5S_t *new_space = NULL; /* New dataspace created */ + hid_t ret_value; /* Return value */ FUNC_ENTER_API(H5I_INVALID_HID) H5TRACE6("i", "iSs*h*h*h*h", space_id, op, start, stride, count, block); @@ -10529,11 +10529,11 @@ done: /*------------------------------------------------------------------------- * Function: H5S__combine_select * - * Purpose: Internal version of H5Scombine_select(). + * Purpose: Internal version of H5Scombine_select(). * - * Return: New dataspace on success/NULL on failure + * Return: New dataspace on success/NULL on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, October 30, 2001 * *------------------------------------------------------------------------- @@ -10668,15 +10668,15 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Scombine_select() */ - + /*------------------------------------------------------------------------- * Function: H5S__modify_select * - * Purpose: Internal version of H5Smodify_select(). + * Purpose: Internal version of H5Smodify_select(). * - * Return: New dataspace on success/NULL on failure + * Return: New dataspace on success/NULL on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, October 30, 2001 * *------------------------------------------------------------------------- @@ -12174,7 +12174,7 @@ H5S_hyper_get_first_inc_block(const H5S_t *space, hsize_t clip_size, hbool_t *partial) { H5S_hyper_sel_t *hslab; /* Convenience pointer to hyperslab info */ - H5S_hyper_dim_t *diminfo; /* Convenience pointer to diminfo.opt in unlimited dimension */ + H5S_hyper_dim_t *diminfo; /* Convenience pointer to diminfo in unlimited dimension */ hsize_t ret_value = 0; FUNC_ENTER_NOAPI(0) diff --git a/src/H5Smpio.c b/src/H5Smpio.c index 33dd492..147fd25 100644 --- a/src/H5Smpio.c +++ b/src/H5Smpio.c @@ -14,7 +14,7 @@ /* * Programmer: rky 980813 * - * Purpose: Create MPI data types for HDF5 selections. + * Purpose: Create MPI data types for HDF5 selections. * */ @@ -148,14 +148,14 @@ H5S__mpio_all_type(const H5S_t *space, size_t elmt_size, *new_type = MPI_BYTE; H5_CHECKED_ASSIGN(*count, int, total_bytes, hsize_t); *is_derived_type = FALSE; - } /* end if */ + } else { /* Create a LARGE derived datatype for this transfer */ if(H5_mpio_create_large_type(total_bytes, 0, MPI_BYTE, new_type) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large datatype from the all selection") *count = 1; *is_derived_type = TRUE; - } /* end else */ + } done: FUNC_LEAVE_NOAPI(ret_value) @@ -253,7 +253,7 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points, /* Commit MPI datatype for later use */ if(MPI_SUCCESS != (mpi_code = MPI_Type_commit(new_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_commit failed", mpi_code) - } /* end if */ + } else { /* use LARGE_DATATYPE:: * We'll create an hindexed_block type for every 2G point count and then combine @@ -295,7 +295,7 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points, #if MPI_VERSION >= 3 if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block((int)bigio_count, 1, &disp[(hsize_t)i*bigio_count], elmt_type, &inner_types[i]))) - HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code) + HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code); #else if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed((int)bigio_count, blocks, &disp[i*bigio_count], elmt_type, &inner_types[i]))) @@ -309,7 +309,7 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points, #if MPI_VERSION >= 3 if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block(remaining_points, 1, &disp[(hsize_t)num_big_types*bigio_count], elmt_type, &inner_types[num_big_types]))) - HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code) + HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code); #else if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed((int)remaining_points, blocks, &disp[num_big_types*bigio_count], elmt_type, &inner_types[num_big_types]))) @@ -317,11 +317,12 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points, #endif inner_blocks[num_big_types] = 1; inner_disps[num_big_types] = 0; - } /* end if */ + } if(MPI_SUCCESS != (mpi_code = MPI_Type_create_struct(total_types, inner_blocks, inner_disps, inner_types, new_type))) - HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_struct", mpi_code) + HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_struct", mpi_code); + for(i = 0; i < total_types; i++) MPI_Type_free(&inner_types[i]); @@ -492,7 +493,7 @@ done: * selection and so the memory datatype has to be permuted using the * permutation map created by the file selection. * - * Note: This routine is called from H5_mpio_space_type(), which is + * Note: This routine is called from H5S_mpio_space_type(), which is * called first for the file dataspace and creates * * Return: Non-negative on success, negative on failure. @@ -799,7 +800,7 @@ if(H5DEBUG(S)) { /* Use a single MPI datatype that has a 32 bit size */ if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)elmt_size, MPI_BYTE, &inner_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code) - } /* end if */ + } else /* Create the compound datatype for this operation (> 2GB) */ if(H5_mpio_create_large_type(elmt_size, 0, MPI_BYTE, &inner_type) < 0) @@ -836,7 +837,7 @@ if(H5DEBUG(S)) MPI_Type_free(&inner_type); if(mpi_code != MPI_SUCCESS) HMPI_GOTO_ERROR(FAIL, "couldn't create MPI vector type", mpi_code) - } /* end if */ + } else { /* Things get a bit more complicated and require LARGE_DATATYPE processing * There are two MPI datatypes that need to be created: @@ -858,7 +859,7 @@ if(H5DEBUG(S)) if(bigio_count < d[i].block) { if(H5_mpio_create_large_type(d[i].block, 0, inner_type, &block_type) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large block datatype in hyper selection") - } /* end if */ + } else if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)d[i].block, inner_type, &block_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code) @@ -879,7 +880,7 @@ if(H5DEBUG(S)) if(bigio_count < d[i].count) { if(H5_mpio_create_large_type(d[i].count, stride_in_bytes, block_type, &outer_type) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large outer datatype in hyper selection") - } /* end if */ + } /* otherwise a regular create_hvector will do */ else if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hvector((int)d[i].count, /* count */ @@ -891,7 +892,7 @@ if(H5DEBUG(S)) MPI_Type_free(&block_type); MPI_Type_free(&inner_type); - } /* end else */ + } /* end else */ /**************************************** * Then build the dimension type as (start, vector type, xtent). @@ -1004,7 +1005,7 @@ H5S__mpio_span_hyper_type(const H5S_t *space, size_t elmt_size, if(bigio_count >= elmt_size) { if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)elmt_size, MPI_BYTE, &elmt_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code) - } /* end if */ + } else if(H5_mpio_create_large_type(elmt_size, 0, MPI_BYTE, &elmt_type) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large element datatype in span_hyper selection") @@ -1113,7 +1114,6 @@ H5S__obtain_datatype(H5S_hyper_span_info_t *spans, const hsize_t *down, { H5S_hyper_span_t *span; /* Hyperslab span to iterate with */ hsize_t bigio_count; /* Transition point to create derived type */ - size_t alloc_count = 0; /* Number of span tree nodes allocated at this level */ size_t outercount = 0; /* Number of span tree nodes at this level */ MPI_Datatype *inner_type = NULL; diff --git a/src/H5Snone.c b/src/H5Snone.c index 630d1d5..672302d 100644 --- a/src/H5Snone.c +++ b/src/H5Snone.c @@ -29,7 +29,7 @@ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ +#include "H5Eprivate.h" /* Error handling */ #include "H5Iprivate.h" /* ID Functions */ #include "H5Spkg.h" /* Dataspace functions */ #include "H5VMprivate.h" /* Vector functions */ @@ -68,8 +68,7 @@ static htri_t H5S__none_intersect_block(const H5S_t *space, const hsize_t *start static herr_t H5S__none_adjust_u(H5S_t *space, const hsize_t *offset); static herr_t H5S__none_adjust_s(H5S_t *space, const hssize_t *offset); static herr_t H5S__none_project_scalar(const H5S_t *space, hsize_t *offset); -static herr_t H5S__none_project_simple(const H5S_t *space, H5S_t *new_space, - hsize_t *offset); +static herr_t H5S__none_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); static herr_t H5S__none_iter_init(const H5S_t *space, H5S_sel_iter_t *iter); /* Selection iteration callbacks */ @@ -143,13 +142,13 @@ static const H5S_sel_iter_class_t H5S_sel_iter_none[1] = {{ /*------------------------------------------------------------------------- - * Function: H5S__none_iter_init + * Function: H5S__none_iter_init * - * Purpose: Initializes iteration information for "none" selection. + * Purpose: Initializes iteration information for "none" selection. * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * *------------------------------------------------------------------------- @@ -171,21 +170,20 @@ H5S__none_iter_init(const H5S_t H5_ATTR_UNUSED *space, H5S_sel_iter_t *iter) /*------------------------------------------------------------------------- - * Function: H5S__none_iter_coords + * Function: H5S__none_iter_coords * - * Purpose: Retrieve the current coordinates of iterator for current + * Purpose: Retrieve the current coordinates of iterator for current * selection * - * Return: Non-negative on success, negative on failure + * Return: Non-negative on success, negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, April 22, 2003 * *------------------------------------------------------------------------- */ static herr_t -H5S__none_iter_coords(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, - hsize_t H5_ATTR_UNUSED *coords) +H5S__none_iter_coords(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, hsize_t H5_ATTR_UNUSED *coords) { FUNC_ENTER_STATIC_NOERR @@ -198,21 +196,20 @@ H5S__none_iter_coords(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, /*------------------------------------------------------------------------- - * Function: H5S__none_iter_block + * Function: H5S__none_iter_block * - * Purpose: Retrieve the current block of iterator for current + * Purpose: Retrieve the current block of iterator for current * selection * - * Return: Non-negative on success, negative on failure + * Return: Non-negative on success, negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Monday, June 2, 2003 * *------------------------------------------------------------------------- */ static herr_t -H5S__none_iter_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, - hsize_t H5_ATTR_UNUSED *start, hsize_t H5_ATTR_UNUSED *end) +H5S__none_iter_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, hsize_t H5_ATTR_UNUSED *start, hsize_t H5_ATTR_UNUSED *end) { FUNC_ENTER_STATIC_NOERR @@ -226,13 +223,13 @@ H5S__none_iter_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, /*------------------------------------------------------------------------- - * Function: H5S__none_iter_nelmts + * Function: H5S__none_iter_nelmts * - * Purpose: Return number of elements left to process in iterator + * Purpose: Return number of elements left to process in iterator * - * Return: Non-negative number of elements on success, zero on failure + * Return: Non-negative number of elements on success, zero on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * *------------------------------------------------------------------------- @@ -472,8 +469,7 @@ H5S__none_release(H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S__none_copy(H5S_t *dst, const H5S_t H5_ATTR_UNUSED *src, - hbool_t H5_ATTR_UNUSED share_selection) +H5S__none_copy(H5S_t *dst, const H5S_t H5_ATTR_UNUSED *src, hbool_t H5_ATTR_UNUSED share_selection) { FUNC_ENTER_STATIC_NOERR @@ -586,8 +582,8 @@ H5S__none_serialize(const H5S_t *space, uint8_t **p) HDassert(pp); /* Store the preamble information */ - UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(pp, (uint32_t)H5S_NONE_VERSION_1); /* Store the version number */ + UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(pp, (uint32_t)H5S_NONE_VERSION_1); /* Store the version number */ UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ UINT32ENCODE(pp, (uint32_t)0); /* Store the additional information length */ @@ -698,8 +694,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S__none_bounds(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUSED *start, - hsize_t H5_ATTR_UNUSED *end) +H5S__none_bounds(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUSED *start, hsize_t H5_ATTR_UNUSED *end) { FUNC_ENTER_STATIC_NOERR @@ -708,7 +703,7 @@ H5S__none_bounds(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUSED *star HDassert(end); FUNC_LEAVE_NOAPI(FAIL) -} /* end H5Sget_none_bounds() */ +} /* end H5S_none_bounds() */ /*-------------------------------------------------------------------------- @@ -991,11 +986,11 @@ H5S__none_adjust_s(H5S_t H5_ATTR_UNUSED *space, const hssize_t H5_ATTR_UNUSED *o /*------------------------------------------------------------------------- - * Function: H5S__none_project_scalar + * Function: H5S__none_project_scalar * - * Purpose: Projects a 'none' selection into a scalar dataspace + * Purpose: Projects a 'none' selection into a scalar dataspace * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * * Programmer: Quincey Koziol * Sunday, July 18, 2010 @@ -1016,14 +1011,14 @@ H5S__none_project_scalar(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUS /*------------------------------------------------------------------------- - * Function: H5S__none_project_simple + * Function: H5S__none_project_simple * - * Purpose: Projects an 'none' selection onto/into a simple dataspace + * Purpose: Projects an 'none' selection onto/into a simple dataspace * of a different rank * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Sunday, July 18, 2010 * *------------------------------------------------------------------------- diff --git a/src/H5Spkg.h b/src/H5Spkg.h index da2dd4a..e08fedf 100644 --- a/src/H5Spkg.h +++ b/src/H5Spkg.h @@ -324,11 +324,9 @@ struct H5S_t { /* Selection iteration methods */ /* Method to retrieve the current coordinates of iterator for current selection */ -typedef herr_t (*H5S_sel_iter_coords_func_t)(const H5S_sel_iter_t *iter, - hsize_t *coords); +typedef herr_t (*H5S_sel_iter_coords_func_t)(const H5S_sel_iter_t *iter, hsize_t *coords); /* Method to retrieve the current block of iterator for current selection */ -typedef herr_t (*H5S_sel_iter_block_func_t)(const H5S_sel_iter_t *iter, - hsize_t *start, hsize_t *end); +typedef herr_t (*H5S_sel_iter_block_func_t)(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end); /* Method to determine number of elements left in iterator for current selection */ typedef hsize_t (*H5S_sel_iter_nelmts_func_t)(const H5S_sel_iter_t *iter); /* Method to determine if there are more blocks left in the current selection */ diff --git a/src/H5Spoint.c b/src/H5Spoint.c index 6948125..f53033b 100644 --- a/src/H5Spoint.c +++ b/src/H5Spoint.c @@ -12,10 +12,10 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> + * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * - * Purpose: Point selection dataspace I/O functions. + * Purpose: Point selection dataspace I/O functions. */ /****************/ @@ -30,8 +30,8 @@ /***********/ #include "H5private.h" /* Generic Functions */ #include "H5CXprivate.h" /* API Contexts */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FLprivate.h" /* Free Lists */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FLprivate.h" /* Free Lists */ #include "H5Iprivate.h" /* ID Functions */ #include "H5MMprivate.h" /* Memory management */ #include "H5Spkg.h" /* Dataspace functions */ @@ -75,21 +75,17 @@ static htri_t H5S__point_is_contiguous(const H5S_t *space); static htri_t H5S__point_is_single(const H5S_t *space); static htri_t H5S__point_is_regular(const H5S_t *space); static htri_t H5S__point_shape_same(const H5S_t *space1, const H5S_t *space2); -static htri_t H5S__point_intersect_block(const H5S_t *space, const hsize_t *start, - const hsize_t *end); +static htri_t H5S__point_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end); static herr_t H5S__point_adjust_u(H5S_t *space, const hsize_t *offset); static herr_t H5S__point_adjust_s(H5S_t *space, const hssize_t *offset); -static herr_t H5S__point_project_scalar(const H5S_t *spasce, hsize_t *offset); -static herr_t H5S__point_project_simple(const H5S_t *space, H5S_t *new_space, - hsize_t *offset); +static herr_t H5S__point_project_scalar(const H5S_t *space, hsize_t *offset); +static herr_t H5S__point_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); static herr_t H5S__point_iter_init(const H5S_t *space, H5S_sel_iter_t *iter); -static herr_t H5S__point_get_version_enc_size(const H5S_t *space, - uint32_t *version, uint8_t *enc_size); +static herr_t H5S__point_get_version_enc_size(const H5S_t *space, uint32_t *version, uint8_t *enc_size); /* Selection iteration callbacks */ static herr_t H5S__point_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords); -static herr_t H5S__point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, - hsize_t *end); +static herr_t H5S__point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end); static hsize_t H5S__point_iter_nelmts(const H5S_sel_iter_t *iter); static htri_t H5S__point_iter_has_next_block(const H5S_sel_iter_t *iter); static herr_t H5S__point_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); @@ -169,16 +165,15 @@ H5FL_BARR_DEFINE_STATIC(H5S_pnt_node_t, hcoords_t, H5S_MAX_RANK); /* Declare a free list to manage the H5S_pnt_list_t struct */ H5FL_DEFINE_STATIC(H5S_pnt_list_t); - - + /*------------------------------------------------------------------------- * Function: H5S__point_iter_init * - * Purpose: Initializes iteration information for point selection. + * Purpose: Initializes iteration information for point selection. * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * *------------------------------------------------------------------------- @@ -223,16 +218,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_iter_init() */ - + /*------------------------------------------------------------------------- * Function: H5S__point_iter_coords * - * Purpose: Retrieve the current coordinates of iterator for current + * Purpose: Retrieve the current coordinates of iterator for current * selection * - * Return: Non-negative on success, negative on failure + * Return: Non-negative on success, negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, April 22, 2003 * *------------------------------------------------------------------------- @@ -252,16 +247,16 @@ H5S__point_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_iter_coords() */ - + /*------------------------------------------------------------------------- - * Function: H5S__point_iter_block + * Function: H5S_point_iter_block * - * Purpose: Retrieve the current block of iterator for current + * Purpose: Retrieve the current block of iterator for current * selection * - * Return: Non-negative on success, negative on failure + * Return: Non-negative on success, negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Monday, June 2, 2003 * *------------------------------------------------------------------------- @@ -283,15 +278,15 @@ H5S__point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_iter_block() */ - + /*------------------------------------------------------------------------- * Function: H5S__point_iter_nelmts * - * Purpose: Return number of elements left to process in iterator + * Purpose: Return number of elements left to process in iterator * - * Return: Non-negative number of elements on success, zero on failure + * Return: Non-negative number of elements on success, zero on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * *------------------------------------------------------------------------- @@ -307,7 +302,7 @@ H5S__point_iter_nelmts(const H5S_sel_iter_t *iter) FUNC_LEAVE_NOAPI(iter->elmt_left) } /* end H5S__point_iter_nelmts() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_iter_has_next_block @@ -343,7 +338,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_iter_has_next_block() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_iter_next @@ -380,7 +375,7 @@ H5S__point_iter_next(H5S_sel_iter_t *iter, size_t nelem) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_iter_next() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_iter_next_block @@ -412,7 +407,7 @@ H5S__point_iter_next_block(H5S_sel_iter_t *iter) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_iter_next_block() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_iter_get_seq_list @@ -543,7 +538,7 @@ H5S__point_iter_get_seq_list(H5S_sel_iter_t *iter, size_t maxseq, size_t maxelem FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_iter_get_seq_list() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_iter_release @@ -577,7 +572,7 @@ H5S__point_iter_release(H5S_sel_iter_t * iter) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_iter_release() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_add @@ -694,7 +689,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_add() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_release @@ -732,7 +727,7 @@ H5S__point_release(H5S_t *space) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_release() */ - + /*-------------------------------------------------------------------------- NAME H5S_select_elements @@ -789,7 +784,7 @@ H5S_select_elements(H5S_t *space, H5S_seloper_t op, size_t num_elem, /* Set the bound box to the default value */ H5VM_array_fill(space->select.sel_info.pnt_lst->low_bounds, &tmp, sizeof(hsize_t), space->extent.rank); HDmemset(space->select.sel_info.pnt_lst->high_bounds, 0, sizeof(hsize_t) * space->extent.rank); - } /* end if */ + } /* Add points to selection */ if(H5S__point_add(space, op, num_elem, coord) < 0) @@ -802,7 +797,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_select_elements() */ - + /*-------------------------------------------------------------------------- NAME H5S__copy_pnt_list @@ -878,7 +873,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__copy_pnt_list() */ - + /*-------------------------------------------------------------------------- NAME H5S__free_pnt_list @@ -920,7 +915,7 @@ H5S__free_pnt_list(H5S_pnt_list_t *pnt_lst) FUNC_LEAVE_NOAPI_VOID } /* end H5S__free_pnt_list() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_copy @@ -948,7 +943,7 @@ H5S__point_copy(H5S_t *dst, const H5S_t *src, hbool_t H5_ATTR_UNUSED share_selec FUNC_ENTER_STATIC - /* Sanity check */ + /* Sanity checks */ HDassert(src); HDassert(dst); @@ -960,7 +955,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_copy() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_is_valid @@ -1004,7 +999,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_is_valid() */ - + /*-------------------------------------------------------------------------- NAME H5Sget_select_elem_npoints @@ -1050,7 +1045,7 @@ done: PURPOSE Determine the version and the size (2, 4 or 8 bytes) to encode point selection info USAGE - hssize_t H5S__point_set_enc_size(space, version, enc_size) + hssize_t H5S__point_get_version_enc_size(space, version, enc_size) const H5S_t *space: IN: Dataspace ID of selection to query uint32_t *version: OUT: The version to use for encoding uint8_t *enc_size: OUT: The size to use for encoding @@ -1161,7 +1156,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5S__point_get_version_enc_size() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_serial_size @@ -1194,7 +1189,7 @@ H5S__point_serial_size(const H5S_t *space) /* Determine the version and encoded size for point selection */ if(H5S__point_get_version_enc_size(space, &version, &enc_size) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine version and enc_size") /* Basic number of bytes required to serialize point selection: */ if(version >= H5S_POINT_VERSION_2) @@ -1220,7 +1215,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_serial_size() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_serialize @@ -1246,7 +1241,7 @@ static herr_t H5S__point_serialize(const H5S_t *space, uint8_t **p) { H5S_pnt_node_t *curr; /* Point information nodes */ - uint8_t *pp; /* Local pointer for decoding */ + uint8_t *pp; /* Local pointer for encoding */ uint8_t *lenp = NULL; /* pointer to length location for later storage */ uint32_t len=0; /* number of bytes used */ unsigned u; /* local counting variable */ @@ -1264,7 +1259,7 @@ H5S__point_serialize(const H5S_t *space, uint8_t **p) /* Determine the version and encoded size for point selection info */ if(H5S__point_get_version_enc_size(space, &version, &enc_size) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine version and enc_size") /* Store the preamble information */ UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ @@ -1352,8 +1347,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5S__point_serialize() */ - - + /*-------------------------------------------------------------------------- NAME H5S__point_deserialize @@ -1508,7 +1502,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_deserialize() */ - + /*-------------------------------------------------------------------------- NAME H5S__get_select_elem_pointlist @@ -1539,8 +1533,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S__get_select_elem_pointlist(const H5S_t *space, hsize_t startpoint, - hsize_t numpoints, hsize_t *buf) +H5S__get_select_elem_pointlist(const H5S_t *space, hsize_t startpoint, hsize_t numpoints, hsize_t *buf) { H5S_pnt_node_t *node; /* Point node */ unsigned rank; /* Dataspace rank */ @@ -1573,7 +1566,7 @@ H5S__get_select_elem_pointlist(const H5S_t *space, hsize_t startpoint, FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__get_select_elem_pointlist() */ - + /*-------------------------------------------------------------------------- NAME H5Sget_select_elem_pointlist @@ -1627,7 +1620,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_select_elem_pointlist() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_bounds @@ -1685,7 +1678,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_bounds() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_offset @@ -1749,7 +1742,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_offset() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_unlim_dim @@ -1778,7 +1771,7 @@ H5S__point_unlim_dim(const H5S_t H5_ATTR_UNUSED *space) FUNC_LEAVE_NOAPI(-1) } /* end H5S__point_unlim_dim() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_is_contiguous @@ -1818,7 +1811,7 @@ H5S__point_is_contiguous(const H5S_t *space) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_is_contiguous() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_is_single @@ -1855,7 +1848,7 @@ H5S__point_is_single(const H5S_t *space) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_is_single() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_is_regular @@ -1896,7 +1889,7 @@ H5S__point_is_regular(const H5S_t *space) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_is_regular() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_shape_same @@ -2004,7 +1997,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_shape_same() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_intersect_block @@ -2061,7 +2054,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_intersect_block() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_adjust_u @@ -2098,7 +2091,7 @@ H5S__point_adjust_u(H5S_t *space, const hsize_t *offset) if(0 != offset[u]) { non_zero_offset = TRUE; break; - } /* end if */ + } /* Only perform operation if the offset is non-zero */ if(non_zero_offset) { @@ -2129,7 +2122,7 @@ H5S__point_adjust_u(H5S_t *space, const hsize_t *offset) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_adjust_u() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_adjust_s @@ -2199,15 +2192,16 @@ H5S__point_adjust_s(H5S_t *space, const hssize_t *offset) } /* end H5S__point_adjust_s() */ + /*------------------------------------------------------------------------- * Function: H5S__point_project_scalar * - * Purpose: Projects a single element point selection into a scalar + * Purpose: Projects a single element point selection into a scalar * dataspace * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Sunday, July 18, 2010 * *------------------------------------------------------------------------- @@ -2238,16 +2232,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_project_scalar() */ - + /*------------------------------------------------------------------------- - * Function: H5S__point_project_simple + * Function: H5S_point_project_simple * - * Purpose: Projects a point selection onto/into a simple dataspace + * Purpose: Projects a point selection onto/into a simple dataspace * of a different rank * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Sunday, July 18, 2010 * *------------------------------------------------------------------------- @@ -2374,7 +2368,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_project_simple() */ - + /*-------------------------------------------------------------------------- NAME H5Sselect_elements diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h index a61c505..5100f1c 100644 --- a/src/H5Sprivate.h +++ b/src/H5Sprivate.h @@ -183,6 +183,7 @@ typedef struct H5S_sel_iter_op_t { #define H5S_SELECT_ITER_GET_SEQ_LIST(ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN) (H5S_select_iter_get_seq_list(ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN)) #define H5S_SELECT_ITER_RELEASE(ITER) (H5S_select_iter_release(ITER)) #endif /* H5S_MODULE */ + /* Handle these callbacks in a special way, since they have prologs that need to be executed */ #define H5S_SELECT_COPY(DST,SRC,SHARE) (H5S_select_copy(DST,SRC,SHARE)) #define H5S_SELECT_SHAPE_SAME(S1,S2) (H5S_select_shape_same(S1,S2)) diff --git a/src/H5Sselect.c b/src/H5Sselect.c index 1072d7d..c9d7fc0 100644 --- a/src/H5Sselect.c +++ b/src/H5Sselect.c @@ -32,6 +32,7 @@ #include "H5Eprivate.h" /* Error handling */ #include "H5FLprivate.h" /* Free Lists */ #include "H5Iprivate.h" /* IDs */ +#include "H5MMprivate.h" /* Memory management */ #include "H5Spkg.h" /* Dataspaces */ #include "H5VMprivate.h" /* Vector and array functions */ @@ -144,8 +145,8 @@ H5S_select_offset(H5S_t *space, const hssize_t *offset) herr_t H5Soffset_simple(hid_t space_id, const hssize_t *offset) { - H5S_t *space; /* Dataspace to query */ - herr_t ret_value = SUCCEED; /* Return value */ + H5S_t *space; /* Dataspace to modify */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "i*Hs", space_id, offset); @@ -582,7 +583,7 @@ H5S_select_deserialize(H5S_t **space, const uint8_t **p) default: break; - } /* end switch */ + } if(ret_value < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTLOAD, FAIL, "can't deserialize selection") @@ -1170,7 +1171,7 @@ H5S_select_iter_init(H5S_sel_iter_t *sel_iter, const H5S_t *space, if(sel_iter->rank > 0) { H5MM_memcpy(sel_iter->dims, space->extent.size, sizeof(hsize_t) * space->extent.rank); H5MM_memcpy(sel_iter->sel_off, space->select.offset, sizeof(hsize_t) * space->extent.rank); - } /* end if */ + } /* Save the element size */ sel_iter->elmt_size = elmt_size; @@ -5272,16 +5272,21 @@ H5T_convert(H5T_path_t *tpath, hid_t src_id, hid_t dst_id, size_t nelmts, size_t buf_stride, size_t bkg_stride, void *buf, void *bkg) { #ifdef H5T_DEBUG - H5_timer_t timer; + H5_timer_t timer; /* Timer for conversion */ #endif herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) #ifdef H5T_DEBUG - if(H5DEBUG(T)) - H5_timer_begin(&timer); + if(H5DEBUG(T)) { + /* Initialize and start timer */ + H5_timer_init(&timer); + H5_timer_start(&timer); + } /* end if */ #endif + + /* Call the appropriate conversion callback */ tpath->cdata.command = H5T_CONV_CONV; if(tpath->conv.is_app) { if((tpath->conv.u.app_func)(src_id, dst_id, &(tpath->cdata), nelmts, buf_stride, bkg_stride, buf, bkg, H5CX_get_dxpl()) < 0) @@ -5292,10 +5297,16 @@ H5T_convert(H5T_path_t *tpath, hid_t src_id, hid_t dst_id, size_t nelmts, HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCONVERT, FAIL, "datatype conversion failed") #ifdef H5T_DEBUG if(H5DEBUG(T)) { - H5_timer_end(&(tpath->stats.timer), &timer); + /* Stop timer */ + H5_timer_stop(&timer); + + /* Record elapsed timer info */ + H5_timer_get_times(timer, &tpath->stats.times); + + /* Increment # of calls and # of elements converted */ tpath->stats.ncalls++; tpath->stats.nelmts += nelmts; - } + } /* end if */ #endif done: @@ -678,3 +678,4 @@ H5TS_create_thread(void *(*func)(void *), H5TS_attr_t *attr, void *udata) } /* H5TS_create_thread */ #endif /* H5_HAVE_THREADSAFE */ + diff --git a/src/H5Tconv.c b/src/H5Tconv.c index 06eb44e..15658cc 100644 --- a/src/H5Tconv.c +++ b/src/H5Tconv.c @@ -3110,8 +3110,24 @@ H5T__conv_vlen(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, if(NULL == (tpath = H5T_path_find(src->shared->parent, dst->shared->parent))) HGOTO_ERROR(H5E_DATATYPE, H5E_UNSUPPORTED, FAIL, "unable to convert between src and dest datatypes") else if(!H5T_path_noop(tpath)) { - if((tsrc_id = H5I_register(H5I_DATATYPE, H5T_copy(src->shared->parent, H5T_COPY_ALL), FALSE)) < 0 || - (tdst_id = H5I_register(H5I_DATATYPE, H5T_copy(dst->shared->parent, H5T_COPY_ALL), FALSE)) < 0) + H5T_t *tsrc_cpy = NULL, *tdst_cpy = NULL; + + if(NULL == (tsrc_cpy = H5T_copy(src->shared->parent, H5T_COPY_ALL))) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCOPY, FAIL, "unable to copy src type for conversion") + /* References need to know about the src file */ + if(tsrc_cpy->shared->type == H5T_REFERENCE) + if(H5T_set_loc(tsrc_cpy, src->shared->u.vlen.file, H5T_LOC_MEMORY) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "can't set datatype location"); + + if(NULL == (tdst_cpy = H5T_copy(dst->shared->parent, H5T_COPY_ALL))) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCOPY, FAIL, "unable to copy dst type for conversion") + /* References need to know about the dst file */ + if(tdst_cpy->shared->type == H5T_REFERENCE) + if(H5T_set_loc(tdst_cpy, dst->shared->u.vlen.file, H5T_LOC_MEMORY) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "can't set datatype location"); + + if(((tsrc_id = H5I_register(H5I_DATATYPE, tsrc_cpy, FALSE)) < 0) + || ((tdst_id = H5I_register(H5I_DATATYPE, tdst_cpy, FALSE)) < 0)) HGOTO_ERROR(H5E_DATASET, H5E_CANTREGISTER, FAIL, "unable to register types for conversion") } /* end else-if */ else diff --git a/src/H5Tdbg.c b/src/H5Tdbg.c index 605310a..6188138 100644 --- a/src/H5Tdbg.c +++ b/src/H5Tdbg.c @@ -13,11 +13,11 @@ /*------------------------------------------------------------------------- * - * Created: H5Tdbg.c - * Jul 19 2007 - * Quincey Koziol <koziol@hdfgroup.org> + * Created: H5Tdbg.c + * Jul 19 2007 + * Quincey Koziol * - * Purpose: Dump debugging information about a datatype + * Purpose: Dump debugging information about a datatype * *------------------------------------------------------------------------- */ @@ -95,25 +95,24 @@ herr_t H5T__print_stats(H5T_path_t H5_ATTR_UNUSED * path, int H5_ATTR_UNUSED * nprint/*in,out*/) { -#ifdef H5T_DEBUG - hsize_t nbytes; - char bandwidth[32]; -#endif - FUNC_ENTER_PACKAGE_NOERR #ifdef H5T_DEBUG - if (H5DEBUG(T) && path->stats.ncalls > 0) { - if (nprint && 0 == (*nprint)++) { - HDfprintf(H5DEBUG(T), "H5T: type conversion statistics:\n"); - HDfprintf(H5DEBUG(T), " %-16s %10s %10s %8s %8s %8s %10s\n", - "Conversion", "Elmts", "Calls", "User", - "System", "Elapsed", "Bandwidth"); - HDfprintf(H5DEBUG(T), " %-16s %10s %10s %8s %8s %8s %10s\n", - "----------", "-----", "-----", "----", - "------", "-------", "---------"); - } - if (path->src && path->dst) + if(H5DEBUG(T) && path->stats.ncalls > 0) { + hsize_t nbytes; + char bandwidth[32]; + + if(nprint && 0 == (*nprint)++) { + HDfprintf(H5DEBUG(T), "H5T: type conversion statistics:\n"); + HDfprintf(H5DEBUG(T), " %-16s %10s %10s %8s %8s %8s %10s\n", + "Conversion", "Elmts", "Calls", "User", + "System", "Elapsed", "Bandwidth"); + HDfprintf(H5DEBUG(T), " %-16s %10s %10s %8s %8s %8s %10s\n", + "----------", "-----", "-----", "----", + "------", "-------", "---------"); + } /* end if */ + + if(path->src && path->dst) nbytes = MAX(H5T_get_size(path->src), H5T_get_size(path->dst)); else if (path->src) nbytes = H5T_get_size(path->src); @@ -121,18 +120,20 @@ H5T__print_stats(H5T_path_t H5_ATTR_UNUSED * path, int H5_ATTR_UNUSED * nprint/* nbytes = H5T_get_size(path->dst); else nbytes = 0; - nbytes *= path->stats.nelmts; - H5_bandwidth(bandwidth, (double)nbytes, path->stats.timer.etime); - HDfprintf(H5DEBUG(T), " %-16s %10Hd %10d %8.2f %8.2f %8.2f %10s\n", - path->name, - path->stats.nelmts, - path->stats.ncalls, - path->stats.timer.utime, - path->stats.timer.stime, - path->stats.timer.etime, - bandwidth); - } + + nbytes *= path->stats.nelmts; + H5_bandwidth(bandwidth, (double)nbytes, path->stats.times.elapsed); + HDfprintf(H5DEBUG(T), " %-16s %10Hd %10d %8T %8T %8T %10s\n", + path->name, + path->stats.nelmts, + path->stats.ncalls, + path->stats.times.user, + path->stats.times.system, + path->stats.times.elapsed, + bandwidth); + } /* end if */ #endif + FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5T__print_stats() */ @@ -405,18 +406,18 @@ H5T_debug(const H5T_t *dt, FILE *stream) } /* end else */ } else if (H5T_ENUM == dt->shared->type) { - size_t base_size; + size_t base_size; /* Enumeration data type */ HDfprintf(stream, " "); H5T_debug(dt->shared->parent, stream); base_size = dt->shared->parent->shared->size; for (i = 0; i < dt->shared->u.enumer.nmembs; i++) { - size_t k; + size_t k; HDfprintf(stream, "\n\"%s\" = 0x", dt->shared->u.enumer.name[i]); for (k = 0; k < base_size; k++) - HDfprintf(stream, "%02lx", (unsigned long)((uint8_t *)dt->shared->u.enumer.value + (i * base_size) + k)); + HDfprintf(stream, "%02p", ((uint8_t *)dt->shared->u.enumer.value + (i * base_size) + k)); } /* end for */ HDfprintf(stream, "\n"); } diff --git a/src/H5Tpkg.h b/src/H5Tpkg.h index 39bff15..600d7aa 100644 --- a/src/H5Tpkg.h +++ b/src/H5Tpkg.h @@ -152,7 +152,7 @@ struct H5T_stats_t { unsigned ncalls; /*num calls to conversion function */ hsize_t nelmts; /*total data points converted */ - H5_timer_t timer; /*total time for conversion */ + H5_timevals_t times; /*total time for conversion */ }; /* Library internal datatype conversion functions are... */ diff --git a/src/H5Tref.c b/src/H5Tref.c index b357baa..7c59e75 100644 --- a/src/H5Tref.c +++ b/src/H5Tref.c @@ -144,7 +144,9 @@ H5T__ref_set_loc(const H5T_t *dt, H5VL_object_t *file, H5T_loc_t loc) switch(loc) { case H5T_LOC_MEMORY: /* Memory based reference datatype */ - HDassert(NULL == file); + + /* NB. We allow for the file to be non-NULL when doing + * memory-to-memory conversion */ /* Mark this type as being stored in memory */ dt->shared->u.atomic.u.r.loc = H5T_LOC_MEMORY; @@ -364,9 +366,8 @@ static size_t H5T__ref_mem_getsize(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, size_t H5_ATTR_UNUSED src_size, H5VL_object_t *dst_file, hbool_t *dst_copy) { - H5VL_object_t *vol_obj; /* VOL object for src ref's location */ + H5VL_object_t *vol_obj = NULL; /* VOL object for src ref's location */ const H5R_ref_priv_t *src_ref = (const H5R_ref_priv_t *)src_buf; - hbool_t files_equal = FALSE; /* Whether src & dst references are in same file */ char *file_name_buf_dyn = NULL; /* Pointer to dynamically allocated buffer for file name, if static buffer is too small */ unsigned flags = 0; /* References flags */ size_t ret_value = 0; /* Return value */ @@ -377,14 +378,18 @@ H5T__ref_mem_getsize(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf HDassert(src_buf); HDassert(src_size == H5T_REF_MEM_SIZE); - /* Retrieve VOL object */ - if(NULL == (vol_obj = H5VL_vol_object(src_ref->loc_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid location identifier") + if(NULL != dst_file) { + hbool_t files_equal = TRUE; /* Whether src & dst references are in same file */ - /* Set external flag if referenced file is not destination file */ - if(H5VL_file_is_same(vol_obj, dst_file, &files_equal) < 0) - HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOMPARE, 0, "can't check if files are equal") - flags |= !files_equal ? H5R_IS_EXTERNAL : 0; + /* Retrieve VOL object */ + if(NULL == (vol_obj = H5VL_vol_object(src_ref->loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid location identifier") + + /* Set external flag if referenced file is not destination file */ + if(H5VL_file_is_same(vol_obj, dst_file, &files_equal) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOMPARE, 0, "can't check if files are equal") + flags |= !files_equal ? H5R_IS_EXTERNAL : 0; + } /* Force re-calculating encoding size if any flags are set */ if(flags || !src_ref->encode_size) { @@ -458,8 +463,8 @@ H5T__ref_mem_read(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, { H5VL_object_t *vol_obj; /* VOL object for src ref's location */ const H5R_ref_priv_t *src_ref = (const H5R_ref_priv_t *)src_buf; - hbool_t files_equal = FALSE; /* Whether src & dst references are in same file */ - char file_name_buf_static[256]; /* File name */ + hbool_t files_equal = TRUE; /* Whether src & dst references are in same file */ + char file_name_buf_static[256] = {'\0'}; /* File name */ char *file_name_buf_dyn = NULL; /* Pointer to dynamically allocated buffer for file name, if static buffer is too small */ ssize_t file_name_len; /* Size of file name buffer */ unsigned flags = 0; /* References flags */ @@ -470,10 +475,15 @@ H5T__ref_mem_read(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, /* Sanity check */ HDassert(src_buf); HDassert(src_size == H5T_REF_MEM_SIZE); - HDassert(dst_file); HDassert(dst_buf); HDassert(dst_size); + /* Memory-to-memory conversion to support vlen conversion */ + if(NULL == dst_file) { + HDmemcpy(dst_buf, src_buf, dst_size); + HGOTO_DONE(ret_value); + } + /* Retrieve VOL object */ if(NULL == (vol_obj = H5VL_vol_object(src_ref->loc_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid location identifier") @@ -504,14 +514,16 @@ H5T__ref_mem_read(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, H5CX_set_libver_bounds(NULL); } /* end if */ - /* Get file name */ - if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, sizeof(file_name_buf_static), file_name_buf_static, &file_name_len) < 0) - HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name") - if(file_name_len >= (ssize_t)sizeof(file_name_buf_static)) { - if(NULL == (file_name_buf_dyn = (char *)H5MM_malloc((size_t)file_name_len + 1))) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, 0, "can't allocate space for file name") - if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, (size_t)file_name_len + 1, file_name_buf_dyn, &file_name_len) < 0) + /* Get file name (if external reference) */ + if(flags) { + if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, sizeof(file_name_buf_static), file_name_buf_static, &file_name_len) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name") + if(file_name_len >= (ssize_t)sizeof(file_name_buf_static)) { + if(NULL == (file_name_buf_dyn = (char *)H5MM_malloc((size_t)file_name_len + 1))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, 0, "can't allocate space for file name") + if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, (size_t)file_name_len + 1, file_name_buf_dyn, &file_name_len) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name") + } /* end if */ } /* end if */ /* Encode reference */ @@ -539,7 +551,7 @@ H5T__ref_mem_write(H5VL_object_t *src_file, const void *src_buf, size_t src_size H5R_type_t src_type, H5VL_object_t H5_ATTR_UNUSED *dst_file, void *dst_buf, size_t dst_size, void H5_ATTR_UNUSED *bg_buf) { - H5F_t *src_f; + H5F_t *src_f = NULL; hid_t file_id = H5I_INVALID_HID; H5R_ref_priv_t *dst_ref = (H5R_ref_priv_t *)dst_buf; herr_t ret_value = SUCCEED; @@ -547,14 +559,19 @@ H5T__ref_mem_write(H5VL_object_t *src_file, const void *src_buf, size_t src_size FUNC_ENTER_STATIC /* Sanity check */ - HDassert(src_file); HDassert(src_buf); HDassert(src_size); HDassert(dst_buf); HDassert(dst_size == H5T_REF_MEM_SIZE); + /* Memory-to-memory conversion to support vlen conversion */ + if(NULL == src_file) { + HDmemcpy(dst_buf, src_buf, src_size); + HGOTO_DONE(ret_value); + } + #ifndef NDEBUG - { + if((src_type == H5R_OBJECT1) || (src_type == H5R_DATASET_REGION1)) { hbool_t is_native = FALSE; /* Whether the src file is using the native VOL connector */ /* Check if using native VOL connector */ @@ -35,10 +35,10 @@ #ifdef H5Z_DEBUG typedef struct H5Z_stats_t { struct { - hsize_t total; /* total number of bytes processed */ - hsize_t errors; /* bytes of total attributable to errors */ - H5_timer_t timer; /* execution time including errors */ - } stats[2]; /* 0=output, 1=input */ + hsize_t total; /* total number of bytes processed */ + hsize_t errors; /* bytes of total attributable to errors */ + H5_timevals_t times; /* execution time including errors */ + } stats[2]; /* 0 = output, 1 = input */ } H5Z_stats_t; #endif /* H5Z_DEBUG */ @@ -132,9 +132,9 @@ H5Z_term_package(void) if(H5_PKG_INIT_VAR) { #ifdef H5Z_DEBUG - char comment[16], bandwidth[32]; - int dir, nprint = 0; - size_t i; + char comment[16], bandwidth[32]; + int dir, nprint = 0; + size_t i; if(H5DEBUG(Z)) { for(i = 0; i < H5Z_table_used_g; i++) { @@ -167,25 +167,26 @@ H5Z_term_package(void) */ H5_bandwidth(bandwidth, (double)(H5Z_stat_table_g[i].stats[dir].total), - H5Z_stat_table_g[i].stats[dir].timer.etime); + H5Z_stat_table_g[i].stats[dir].times.elapsed); /* Print the statistics */ - HDfprintf(H5DEBUG(Z), - " %s%-15s %10Hd %10Hd %8.2f %8.2f %8.2f " - "%10s\n", dir?"<":">", comment, + HDfprintf(H5DEBUG(Z), " %s%-15s %10Hd %10Hd %8T %8T %8T %10s\n", + (dir ? "<" : ">"), comment, H5Z_stat_table_g[i].stats[dir].total, H5Z_stat_table_g[i].stats[dir].errors, - H5Z_stat_table_g[i].stats[dir].timer.utime, - H5Z_stat_table_g[i].stats[dir].timer.stime, - H5Z_stat_table_g[i].stats[dir].timer.etime, + H5Z_stat_table_g[i].stats[dir].times.user, + H5Z_stat_table_g[i].stats[dir].times.system, + H5Z_stat_table_g[i].stats[dir].times.elapsed, bandwidth); } /* end for */ } /* end for */ } /* end if */ #endif /* H5Z_DEBUG */ + /* Free the table of filters */ - if (H5Z_table_g) { + if(H5Z_table_g) { H5Z_table_g = (H5Z_class2_t *)H5MM_xfree(H5Z_table_g); + #ifdef H5Z_DEBUG H5Z_stat_table_g = (H5Z_stats_t *)H5MM_xfree(H5Z_stat_table_g); #endif /* H5Z_DEBUG */ @@ -1248,20 +1249,22 @@ done: */ herr_t H5Z_pipeline(const H5O_pline_t *pline, unsigned flags, - unsigned *filter_mask/*in,out*/, H5Z_EDC_t edc_read, - H5Z_cb_t cb_struct, size_t *nbytes/*in,out*/, - size_t *buf_size/*in,out*/, void **buf/*in,out*/) + unsigned *filter_mask/*in,out*/, H5Z_EDC_t edc_read, H5Z_cb_t cb_struct, + size_t *nbytes/*in,out*/, size_t *buf_size/*in,out*/, void **buf/*in,out*/) { - size_t i, idx, new_nbytes; - int fclass_idx; /* Index of filter class in global table */ - H5Z_class2_t *fclass=NULL; /* Filter class pointer */ + size_t idx; + size_t new_nbytes; + int fclass_idx; /* Index of filter class in global table */ + H5Z_class2_t *fclass = NULL; /* Filter class pointer */ #ifdef H5Z_DEBUG - H5Z_stats_t *fstats=NULL; /* Filter stats pointer */ - H5_timer_t timer; + H5Z_stats_t *fstats = NULL; /* Filter stats pointer */ + H5_timer_t timer; /* Timer for filter operations */ + H5_timevals_t times; /* Elapsed time for each operation */ #endif - unsigned failed = 0; - unsigned tmp_flags; - herr_t ret_value = SUCCEED; /* Return value */ + unsigned failed = 0; + unsigned tmp_flags; + size_t i; + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -1272,11 +1275,13 @@ H5Z_pipeline(const H5O_pline_t *pline, unsigned flags, HDassert(buf && *buf); HDassert(!pline || pline->nused < H5Z_MAX_NFILTERS); - if (pline && (flags & H5Z_FLAG_REVERSE)) { /* Read */ - for (i = pline->nused; i > 0; --i) { - idx = i-1; - - if (*filter_mask & ((unsigned)1 << idx)) { +#ifdef H5Z_DEBUG + H5_timer_init(&timer); +#endif + if(pline && (flags & H5Z_FLAG_REVERSE)) { /* Read */ + for(i = pline->nused; i > 0; --i) { + idx = i - 1; + if(*filter_mask & ((unsigned)1 << idx)) { failed |= (unsigned)1 << idx; continue; /* filter excluded */ } @@ -1286,9 +1291,9 @@ H5Z_pipeline(const H5O_pline_t *pline, unsigned flags, * try to load it dynamically and register it. Otherwise, return failure */ if ((fclass_idx = H5Z_find_idx(pline->filter[idx].id)) < 0) { - hbool_t issue_error = FALSE; H5PL_key_t key; const H5Z_class2_t *filter_info; + hbool_t issue_error = FALSE; /* Try loading the filter */ key.id = (int)(pline->filter[idx].id); @@ -1298,7 +1303,7 @@ H5Z_pipeline(const H5O_pline_t *pline, unsigned flags, HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register filter") /* Search in the table of registered filters again to find the dynamic filter just loaded and registered */ - if ((fclass_idx = H5Z_find_idx(pline->filter[idx].id)) < 0) + if((fclass_idx = H5Z_find_idx(pline->filter[idx].id)) < 0) issue_error = TRUE; } else @@ -1316,76 +1321,96 @@ H5Z_pipeline(const H5O_pline_t *pline, unsigned flags, } /* end if */ fclass = &H5Z_table_g[fclass_idx]; + #ifdef H5Z_DEBUG fstats = &H5Z_stat_table_g[fclass_idx]; - H5_timer_begin (&timer); + H5_timer_start(&timer); #endif + tmp_flags = flags | (pline->filter[idx].flags); - tmp_flags |= (edc_read== H5Z_DISABLE_EDC) ? H5Z_FLAG_SKIP_EDC : 0; - new_nbytes = (fclass->filter)(tmp_flags, pline->filter[idx].cd_nelmts, - pline->filter[idx].cd_values, *nbytes, buf_size, buf); + tmp_flags |= (edc_read == H5Z_DISABLE_EDC) ? H5Z_FLAG_SKIP_EDC : 0; + new_nbytes = (fclass->filter)(tmp_flags, + pline->filter[idx].cd_nelmts, pline->filter[idx].cd_values, + *nbytes, buf_size, buf); #ifdef H5Z_DEBUG - H5_timer_end (&(fstats->stats[1].timer), &timer); - fstats->stats[1].total += MAX(*nbytes, new_nbytes); - if (0 == new_nbytes) + H5_timer_stop(&timer); + H5_timer_get_times(timer, ×); + fstats->stats[1].times.elapsed += times.elapsed; + fstats->stats[1].times.system += times.system; + fstats->stats[1].times.user += times.user; + + fstats->stats[1].total += MAX(*nbytes, new_nbytes); + if(0 == new_nbytes) fstats->stats[1].errors += *nbytes; #endif - if (0 == new_nbytes) { - if ((cb_struct.func && (H5Z_CB_FAIL == cb_struct.func(pline->filter[idx].id, *buf, *buf_size, cb_struct.op_data))) || !cb_struct.func) + if(0 == new_nbytes) { + if((cb_struct.func + && (H5Z_CB_FAIL == cb_struct.func(pline->filter[idx].id, *buf, *buf_size, cb_struct.op_data))) + || !cb_struct.func) HGOTO_ERROR(H5E_PLINE, H5E_READERROR, FAIL, "filter returned failure during read") *nbytes = *buf_size; failed |= (unsigned)1 << idx; - H5E_clear_stack (NULL); + H5E_clear_stack(NULL); } else *nbytes = new_nbytes; } } - else if (pline) { /* Write */ - for (idx = 0; idx < pline->nused; idx++) { - if (*filter_mask & ((unsigned)1 << idx)) { + else if(pline) { /* Write */ + for(idx = 0; idx < pline->nused; idx++) { + if(*filter_mask & ((unsigned)1 << idx)) { failed |= (unsigned)1 << idx; - continue; /*filter excluded*/ + continue; /* filter excluded */ } - if ((fclass_idx = H5Z_find_idx(pline->filter[idx].id)) < 0) { + if((fclass_idx = H5Z_find_idx(pline->filter[idx].id)) < 0) { /* Check if filter is optional -- If it isn't, then error */ - if ((pline->filter[idx].flags & H5Z_FLAG_OPTIONAL) == 0) + if((pline->filter[idx].flags & H5Z_FLAG_OPTIONAL) == 0) HGOTO_ERROR(H5E_PLINE, H5E_WRITEERROR, FAIL, "required filter is not registered") - failed |= (unsigned)1 << idx; - H5E_clear_stack (NULL); - continue; /*filter excluded*/ - } + H5E_clear_stack(NULL); + continue; /* filter excluded */ + } /* end if */ + fclass = &H5Z_table_g[fclass_idx]; + #ifdef H5Z_DEBUG fstats = &H5Z_stat_table_g[fclass_idx]; - H5_timer_begin (&timer); + H5_timer_start(&timer); #endif - new_nbytes = (fclass->filter)(flags | (pline->filter[idx].flags), pline->filter[idx].cd_nelmts, - pline->filter[idx].cd_values, *nbytes, buf_size, buf); + + new_nbytes = (fclass->filter)(flags | (pline->filter[idx].flags), + pline->filter[idx].cd_nelmts, pline->filter[idx].cd_values, + *nbytes, buf_size, buf); + #ifdef H5Z_DEBUG - H5_timer_end (&(fstats->stats[0].timer), &timer); + H5_timer_stop(&timer); + H5_timer_get_times(timer, ×); + fstats->stats[0].times.elapsed += times.elapsed; + fstats->stats[0].times.system += times.system; + fstats->stats[0].times.user += times.user; + fstats->stats[0].total += MAX(*nbytes, new_nbytes); - if (0 == new_nbytes) + if(0 == new_nbytes) fstats->stats[0].errors += *nbytes; #endif - if (0 == new_nbytes) { - if (0 == (pline->filter[idx].flags & H5Z_FLAG_OPTIONAL)) { - if ((cb_struct.func && (H5Z_CB_FAIL == cb_struct.func (pline->filter[idx].id, *buf, *nbytes, cb_struct.op_data))) || !cb_struct.func) + + if(0 == new_nbytes) { + if(0 == (pline->filter[idx].flags & H5Z_FLAG_OPTIONAL)) { + if((cb_struct.func && (H5Z_CB_FAIL == cb_struct.func(pline->filter[idx].id, *buf, *nbytes, cb_struct.op_data))) + || !cb_struct.func) HGOTO_ERROR(H5E_PLINE, H5E_WRITEERROR, FAIL, "filter returned failure") *nbytes = *buf_size; } - failed |= (unsigned)1 << idx; - H5E_clear_stack (NULL); + H5E_clear_stack(NULL); } else *nbytes = new_nbytes; - } + } /* end for */ } *filter_mask = failed; diff --git a/src/H5Zfletcher32.c b/src/H5Zfletcher32.c index 4d75d14..c40e9b4 100644 --- a/src/H5Zfletcher32.c +++ b/src/H5Zfletcher32.c @@ -12,7 +12,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Raymond Lu <slu@ncsa.uiuc.edu> + * Programmer: Raymond Lu * Jan 3, 2003 */ diff --git a/src/H5Ztrans.c b/src/H5Ztrans.c index dfc984a..1c8d415 100644 --- a/src/H5Ztrans.c +++ b/src/H5Ztrans.c @@ -400,8 +400,6 @@ static void H5Z_print(H5Z_node *tree, FILE *stream); * Return: Always succeeds. * Programmer: Bill Wendling * 26. August 2003 - * Modifications: - * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs * *------------------------------------------------------------------------- */ @@ -565,8 +563,6 @@ done: * Return: Nothing * Programmer: Bill Wendling * 25. August 2003 - * Modifications: - * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs * *------------------------------------------------------------------------- */ @@ -634,8 +630,6 @@ done: * NULLure: NULL * Programmer: Bill Wendling * 26. August 2003 - * Modifications: - * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs * *------------------------------------------------------------------------- */ @@ -728,8 +722,6 @@ done: * NULLure: NULL * Programmer: Bill Wendling * 26. August 2003 - * Modifications: - * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs * *------------------------------------------------------------------------- */ @@ -828,8 +820,6 @@ done: * NULLure: NULL * Programmer: Bill Wendling * 26. August 2003 - * Modifications: - * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs * *------------------------------------------------------------------------- */ @@ -972,8 +962,6 @@ done: * NULLure: NULL * Programmer: Bill Wendling * 26. August 2003 - * Modifications: - * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs * *------------------------------------------------------------------------- */ @@ -1002,7 +990,6 @@ done: * Return: SUCCEED if transform applied successfully, FAIL otherwise * Programmer: Leon Arber * 5/1/04 - * Modifications: * *------------------------------------------------------------------------- */ @@ -1115,8 +1102,6 @@ done: * Return: Nothing * Programmer: Leon Arber * 5/1/04 - * Modifications: - * * * Notes: In the case of a polynomial data transform (ie, the left and right subtree * are both of type H5Z_XFORM_SYMBOL), the convention is that the left hand side @@ -1213,8 +1198,6 @@ done: * Function: H5Z_find_type * Return: Native type of datatype that is passed in * Programmer: Leon Arber, 4/20/04 - * Modifications: - * * *------------------------------------------------------------------------- */ @@ -1301,7 +1284,6 @@ done: * of the one passed in. * Programmer: Leon Arber * April 1, 2004. - * Modifications: * *------------------------------------------------------------------------- */ @@ -1375,7 +1357,6 @@ done: * Return: TRUE or FALSE * Programmer: Raymond Lu * 15 March 2012 - * Modifications: * *------------------------------------------------------------------------- */ @@ -1404,7 +1385,6 @@ H5Z_op_is_numbs(H5Z_node* _tree) * Return: TRUE or FALSE * Programmer: Raymond Lu * 15 March 2012 - * Modifications: * *------------------------------------------------------------------------- */ @@ -1490,11 +1470,6 @@ H5Z_xform_reduce_tree(H5Z_node* tree) * Return: None. * Programmer: Leon Arber * April 1, 2004. - * Modifications: - * Raymond Lu - * 15 March 2012 - * I added a new macro H5Z_XFORM_DO_OP6 to handle the special - * operations like -x or +x when the left operand is empty. * *------------------------------------------------------------------------- */ @@ -1525,14 +1500,10 @@ H5Z_do_op(H5Z_node* tree) * Success: SUCCEED * Failure: FAIL * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: May 4, 2004 * - * Comments: - * - * Modifications: - * *------------------------------------------------------------------------- */ H5Z_data_xform_t * @@ -1616,14 +1587,10 @@ done: * Success: SUCCEED * Failure: FAIL * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: May 4, 2004 * - * Comments: - * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t @@ -1662,7 +1629,7 @@ H5Z_xform_destroy(H5Z_data_xform_t *data_xform_prop) * Success: SUCCEED * Failure: FAIL * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: May 4, 2004 * @@ -1742,14 +1709,12 @@ done: * * Return: TRUE for no data transform, FALSE for a data transform * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: May 4, 2004 * * Comments: Can't fail * - * Modifications: - * *------------------------------------------------------------------------- */ hbool_t @@ -1773,12 +1738,10 @@ H5Z_xform_noop(const H5Z_data_xform_t *data_xform_prop) * Return: * Pointer to a copy of the string in the data_xform property. * - * Programmer: Leon Arber, larber@ncsa.uiuc.edu + * Programmer: Leon Arber * * Date: Sept. 4, 2004 * - * Modifications: - * *------------------------------------------------------------------------- */ const char * diff --git a/src/H5dbg.c b/src/H5dbg.c index 4939bca..c01ad88 100644 --- a/src/H5dbg.c +++ b/src/H5dbg.c @@ -15,7 +15,7 @@ * * Created: H5dbg.c * Mar 4 2006 - * Quincey Koziol <koziol@ncsa.uiuc.edu> + * Quincey Koziol * * Purpose: Generic debugging routines * @@ -70,7 +70,6 @@ * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Mar 4 2006 * *------------------------------------------------------------------------- diff --git a/src/H5private.h b/src/H5private.h index aca4851..836d7d5 100644 --- a/src/H5private.h +++ b/src/H5private.h @@ -614,21 +614,37 @@ #define LOCK_UN 0x08 #endif /* H5_HAVE_FLOCK */ -/* - * Data types and functions for timing certain parts of the library. +/* Typedefs and functions for timing certain parts of the library. */ + +/* A set of elapsed/user/system times emitted as a time point by the + * platform-independent timers. */ typedef struct { - double utime; /*user time */ - double stime; /*system time */ - double etime; /*elapsed wall-clock time */ + double user; /* User time in seconds */ + double system; /* System time in seconds */ + double elapsed; /* Elapsed (wall clock) time in seconds */ +} H5_timevals_t; + +/* Timer structure for platform-independent timers */ +typedef struct { + H5_timevals_t initial; /* Current interval start time */ + H5_timevals_t final_interval; /* Last interval elapsed time */ + H5_timevals_t total; /* Total elapsed time for all intervals */ + hbool_t is_running; /* Whether timer is running */ } H5_timer_t; -H5_DLL void H5_timer_reset (H5_timer_t *timer); -H5_DLL void H5_timer_begin (H5_timer_t *timer); -H5_DLL void H5_timer_end (H5_timer_t *sum/*in,out*/, - H5_timer_t *timer/*in,out*/); +/* Returns library bandwidth as a pretty string */ H5_DLL void H5_bandwidth(char *buf/*out*/, double nbytes, double nseconds); + +/* Timer functionality */ H5_DLL time_t H5_now(void); +H5_DLL uint64_t H5_now_usec(void); +H5_DLL herr_t H5_timer_init(H5_timer_t *timer /*in,out*/); +H5_DLL herr_t H5_timer_start(H5_timer_t *timer /*in,out*/); +H5_DLL herr_t H5_timer_stop(H5_timer_t *timer /*in,out*/); +H5_DLL herr_t H5_timer_get_times(H5_timer_t timer, H5_timevals_t *times /*in,out*/); +H5_DLL herr_t H5_timer_get_total_times(H5_timer_t timer, H5_timevals_t *times /*in,out*/); +H5_DLL char *H5_timer_get_time_string(double seconds); /* Depth of object copy */ typedef enum { @@ -750,6 +766,9 @@ typedef struct { #ifndef HDclock #define HDclock() clock() #endif /* HDclock */ +#ifndef HDclock_gettime + #define HDclock_gettime(CID, TS) clock_gettime(CID, TS) +#endif /* HDclock_gettime */ #ifndef HDclose #define HDclose(F) close(F) #endif /* HDclose */ @@ -959,7 +978,7 @@ typedef off_t h5_stat_size_t; #define H5_SIZEOF_H5_STAT_SIZE_T H5_SIZEOF_OFF_T #ifndef HDftell - #define HDftell(F) ftello(F) + #define HDftell(F) ftell(F) #endif /* HDftell */ #ifndef HDftruncate #define HDftruncate(F,L) ftruncate(F,L) diff --git a/src/H5public.h b/src/H5public.h index 0fd9f3b..d3edd23 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -26,7 +26,7 @@ * it via H5public.h. The #ifndef _H5public_H guard above would * prevent repeated include. */ -#include "H5pubconf.h" /*from configure */ +#include "H5pubconf.h" /*from configure */ /* API Version macro wrapper definitions */ #include "H5version.h" @@ -38,58 +38,20 @@ #include <sys/types.h> #endif #ifdef H5_STDC_HEADERS -# include <limits.h> /*for H5T_NATIVE_CHAR defn in H5Tpublic.h */ +# include <limits.h> /*for H5T_NATIVE_CHAR defn in H5Tpublic.h */ # include <stdarg.h> /*for variadic functions in H5VLpublic.h */ #endif #ifndef __cplusplus # ifdef H5_HAVE_STDINT_H -# include <stdint.h> /*for C9x types */ +# include <stdint.h> /*for C9x types */ # endif #else # ifdef H5_HAVE_STDINT_H_CXX -# include <stdint.h> /*for C9x types when include from C++ */ +# include <stdint.h> /*for C9x types when include from C++ */ # endif #endif #ifdef H5_HAVE_INTTYPES_H # include <inttypes.h> /* C99/POSIX.1 header for uint64_t, PRIu64 */ -#else /* H5_HAVE_INTTYPES_H */ -/* The following definitions should be suitable for 64-bit Windows, which is - * LLP64, and for 32-bit Windows, which is ILP32. Those are the only - * platforms where <inttypes.h> is likely to be missing. VS2015 and later - * *may* provide these definitions. - */ -#ifdef _WIN64 -# define PRIdPTR "lld" -# define PRIoPTR "llo" -# define PRIuPTR "llu" -# define PRIxPTR "llx" -#else /* _WIN64 */ -# define PRIdPTR "ld" -# define PRIoPTR "lo" -# define PRIuPTR "lu" -# define PRIxPTR "lx" -#endif /* _WIN64 */ - -# define PRId8 "d" -# define PRIo8 "o" -# define PRIu8 "u" -# define PRIx8 "x" -# define PRId16 "d" -# define PRIo16 "o" -# define PRIu16 "u" -# define PRIx16 "x" -# define PRId32 "d" -# define PRIo32 "o" -# define PRIu32 "u" -# define PRIx32 "x" -# define PRId64 "lld" -# define PRIo64 "llo" -# define PRIu64 "llu" -# define PRIx64 "llx" -# define PRIdMAX "lld" -# define PRIoMAX "llo" -# define PRIuMAX "llu" -# define PRIxMAX "llx" #endif #ifdef H5_HAVE_STDDEF_H # include <stddef.h> @@ -99,7 +61,7 @@ # define MPICH_SKIP_MPICXX 1 # define OMPI_SKIP_MPICXX 1 # include <mpi.h> -#ifndef MPI_FILE_NULL /*MPIO may be defined in mpi.h already */ +#ifndef MPI_FILE_NULL /*MPIO may be defined in mpi.h already */ # include <mpio.h> #endif #endif @@ -132,15 +94,15 @@ extern "C" { #endif /* Version numbers */ -#define H5_VERS_MAJOR 1 /* For major interface/format changes */ -#define H5_VERS_MINOR 13 /* For minor interface/format changes */ -#define H5_VERS_RELEASE 0 /* For tweaks, bug-fixes, or development */ -#define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */ - /* Empty string for real releases. */ +#define H5_VERS_MAJOR 1 /* For major interface/format changes */ +#define H5_VERS_MINOR 13 /* For minor interface/format changes */ +#define H5_VERS_RELEASE 0 /* For tweaks, bug-fixes, or development */ +#define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */ + /* Empty string for real releases. */ #define H5_VERS_INFO "HDF5 library version: 1.13.0" /* Full version string */ -#define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ - H5_VERS_RELEASE) +#define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ + H5_VERS_RELEASE) /* macros for comparing the version */ #define H5_VERSION_GE(Maj,Min,Rel) \ @@ -160,8 +122,8 @@ extern "C" { * The negative failure value is most commonly -1, but don't bet on it. The * proper way to detect failure is something like: * - * if((dset = H5Dopen2(file, name)) < 0) - * fprintf(stderr, "unable to open the requested dataset\n"); + * if((dset = H5Dopen2(file, name)) < 0) + * fprintf(stderr, "unable to open the requested dataset\n"); */ typedef int herr_t; @@ -173,13 +135,13 @@ typedef int herr_t; * (false), positive (true), or negative (failure). The proper way to test * for truth from a htri_t function is: * - * if ((retval = H5Tcommitted(type))>0) { - * printf("data type is committed\n"); - * } else if (!retval) { - * printf("data type is not committed\n"); - * } else { - * printf("error determining whether data type is committed\n"); - * } + * if ((retval = H5Tcommitted(type))>0) { + * printf("data type is committed\n"); + * } else if (!retval) { + * printf("data type is not committed\n"); + * } else { + * printf("error determining whether data type is committed\n"); + * } */ #ifdef H5_HAVE_STDBOOL_H #include <stdbool.h> @@ -221,8 +183,8 @@ typedef long long ssize_t; */ #if H5_SIZEOF_LONG_LONG >= 8 H5_GCC_DIAG_OFF(long-long) -typedef unsigned long long hsize_t; -typedef signed long long hssize_t; +typedef unsigned long long hsize_t; +typedef signed long long hssize_t; H5_GCC_DIAG_ON(long-long) # define H5_SIZEOF_HSIZE_T H5_SIZEOF_LONG_LONG # define H5_SIZEOF_HSSIZE_T H5_SIZEOF_LONG_LONG @@ -267,7 +229,7 @@ H5_GCC_DIAG_ON(long-long) #else # error "nothing appropriate for H5_PRINTF_HADDR_FMT" #endif -#define HADDR_MAX (HADDR_UNDEF-1) +#define HADDR_MAX (HADDR_UNDEF-1) /* uint32_t type is used for creation order field for messages. It may be * defined in Posix.1g, otherwise it is defined here. @@ -335,7 +297,7 @@ typedef enum { H5_ITER_INC, /* Increasing order */ H5_ITER_DEC, /* Decreasing order */ H5_ITER_NATIVE, /* No particular order, whatever is fastest */ - H5_ITER_N /* Number of iteration orders */ + H5_ITER_N /* Number of iteration orders */ } H5_iter_order_t; /* Iteration callback values */ @@ -352,10 +314,10 @@ typedef enum { * links in groups/attributes on objects. */ typedef enum H5_index_t { - H5_INDEX_UNKNOWN = -1, /* Unknown index type */ - H5_INDEX_NAME, /* Index on names */ - H5_INDEX_CRT_ORDER, /* Index on creation order */ - H5_INDEX_N /* Number of indices defined */ + H5_INDEX_UNKNOWN = -1, /* Unknown index type */ + H5_INDEX_NAME, /* Index on names */ + H5_INDEX_CRT_ORDER, /* Index on creation order */ + H5_INDEX_N /* Number of indices defined */ } H5_index_t; /* @@ -403,9 +365,9 @@ H5_DLL herr_t H5get_free_list_sizes(size_t *reg_size, size_t *arr_size, size_t *blk_size, size_t *fac_size); H5_DLL herr_t H5get_alloc_stats(H5_alloc_stats_t *stats); H5_DLL herr_t H5get_libversion(unsigned *majnum, unsigned *minnum, - unsigned *relnum); + unsigned *relnum); H5_DLL herr_t H5check_version(unsigned majnum, unsigned minnum, - unsigned relnum); + unsigned relnum); H5_DLL herr_t H5is_library_threadsafe(hbool_t *is_ts); H5_DLL herr_t H5free_memory(void *mem); H5_DLL void *H5allocate_memory(size_t size, hbool_t clear); diff --git a/src/H5system.c b/src/H5system.c index ca0c6bf..24935fd 100644 --- a/src/H5system.c +++ b/src/H5system.c @@ -13,11 +13,11 @@ /*------------------------------------------------------------------------- * - * Created: H5system.c - * Aug 21 2006 - * Quincey Koziol <koziol@hdfgroup.org> + * Created: H5system.c + * Aug 21 2006 + * Quincey Koziol * - * Purpose: System call wrapper implementations. + * Purpose: System call wrapper implementations. * *------------------------------------------------------------------------- */ @@ -30,10 +30,10 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fprivate.h" /* File access */ -#include "H5MMprivate.h" /* Memory management */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fprivate.h" /* File access */ +#include "H5MMprivate.h" /* Memory management */ /****************/ @@ -379,7 +379,7 @@ HDfprintf(FILE *stream, const char *fmt, ...) if(fwidth) len += HDsnprintf(format_templ + len, (sizeof(format_templ) - (size_t)(len + 1)), "%d", fwidth); HDstrncat(format_templ, "s", (sizeof(format_templ) - (size_t)(len + 1))); - fprintf(stream, format_templ, "UNDEF"); + n = fprintf(stream, format_templ, "UNDEF"); } } break; @@ -409,11 +409,25 @@ HDfprintf(FILE *stream, const char *fmt, ...) htri_t tri_var = HDva_arg(ap, htri_t); if(tri_var > 0) - fprintf(stream, "TRUE"); + n = fprintf(stream, "TRUE"); else if(!tri_var) - fprintf(stream, "FALSE"); + n = fprintf(stream, "FALSE"); else - fprintf(stream, "FAIL(%d)", (int)tri_var); + n = fprintf(stream, "FAIL(%d)", (int)tri_var); + } + break; + + case 'T': /* Elapsed time, in seconds */ + { + double seconds = HDva_arg(ap, double); + char *time_string = H5_timer_get_time_string(seconds); + + if(time_string) { + n = fprintf(stream, format_templ, time_string); + HDfree(time_string); + } /* end if */ + else + n = fprintf(stream, format_templ, "(error)"); } break; @@ -861,11 +875,88 @@ Wsetenv(const char *name, const char *value, int overwrite) #pragma comment(lib, "advapi32.lib") #endif + +/*------------------------------------------------------------------------- + * Function: H5_get_win32_times + * + * Purpose: Gets the elapsed, system and user times on Windows platforms. + * All time values are in seconds. + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Dana Robinson + * May 2011 + * + *------------------------------------------------------------------------- + */ +#ifdef H5_HAVE_WIN32_API +int +H5_get_win32_times(H5_timevals_t *tvs /*in,out*/) +{ + static HANDLE process_handle; + ULARGE_INTEGER kernel_start; + ULARGE_INTEGER user_start; + FILETIME KernelTime; + FILETIME UserTime; + FILETIME CreationTime; + FILETIME ExitTime; + LARGE_INTEGER counts_start; + static LARGE_INTEGER counts_freq; + static hbool_t is_initialized = FALSE; + BOOL err; + + HDassert(tvs); + + if(!is_initialized) { + /* NOTE: This is just a pseudo handle and does not need to be closed. */ + process_handle = GetCurrentProcess(); + err = QueryPerformanceFrequency(&counts_freq); + if(0 == err) + return -1; + is_initialized = TRUE; + } /* end if */ + + /************************* + * System and user times * + *************************/ + + err = GetProcessTimes(process_handle, &CreationTime, &ExitTime, &KernelTime, + &UserTime); + if(0 == err) + return -1; + + /* The 1.0E7 factor seems strange but it's due to the clock + * ticking in 100 ns increments. + */ + kernel_start.HighPart = KernelTime.dwHighDateTime; + kernel_start.LowPart = KernelTime.dwLowDateTime; + tvs->system = (double)(kernel_start.QuadPart / 1.0E7F); + + user_start.HighPart = UserTime.dwHighDateTime; + user_start.LowPart = UserTime.dwLowDateTime; + tvs->user = (double)(user_start.QuadPart / 1.0E7F); + + /**************** + * Elapsed time * + ****************/ + + err = QueryPerformanceCounter(&counts_start); + if(0 == err) + return -1; + + tvs->elapsed = (double)(counts_start.QuadPart) / (double)counts_freq.QuadPart; + + return 0; +} /* end H5_get_win32_times() */ +#endif + #define WloginBuffer_count 256 static char Wlogin_buffer[WloginBuffer_count]; + char* -Wgetlogin() +Wgetlogin(void) { #ifdef H5_HAVE_WINSOCK2_H @@ -1370,38 +1461,6 @@ H5_nanosleep(uint64_t nanosec) FUNC_LEAVE_NOAPI_VOID } /* end H5_nanosleep() */ - -/*-------------------------------------------------------------------------- - * Function: H5_get_time - * - * Purpose: Get the current time, as the time of seconds after the UNIX epoch - * - * Return: SUCCEED/FAIL - * - * Programmer: Quincey Koziol - * October 05, 2016 - *-------------------------------------------------------------------------- - */ -double -H5_get_time(void) -{ -#ifdef H5_HAVE_GETTIMEOFDAY - struct timeval curr_time; -#endif /* H5_HAVE_GETTIMEOFDAY */ - double ret_value = (double)0.0f; - - FUNC_ENTER_NOAPI_NOINIT_NOERR - -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&curr_time, NULL); - - ret_value = (double)curr_time.tv_sec + ((double)curr_time.tv_usec / (double)1000000.0f); -#endif /* H5_HAVE_GETTIMEOFDAY */ - - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5_get_time() */ - - #ifdef H5_HAVE_WIN32_API #define H5_WIN32_ENV_VAR_BUFFER_SIZE 32767 diff --git a/src/H5timer.c b/src/H5timer.c index 4b1ec06..cef7bf9 100644 --- a/src/H5timer.c +++ b/src/H5timer.c @@ -12,12 +12,11 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /*------------------------------------------------------------------------- - * * Created: H5timer.c * Aug 21 2006 * Quincey Koziol <koziol@hdfgroup.org> * - * Purpose: Internal 'timer' routines & support routines. + * Purpose: Internal, platform-independent 'timer' support routines. * *------------------------------------------------------------------------- */ @@ -32,20 +31,22 @@ /***********/ #include "H5private.h" /* Generic Functions */ -/* We need this for the struct rusage declaration */ -#if defined(H5_HAVE_GETRUSAGE) && defined(H5_HAVE_SYS_RESOURCE_H) -# include <sys/resource.h> -#endif - -#if defined(H5_HAVE_GETTIMEOFDAY) && defined(H5_HAVE_SYS_TIME_H) -#include <sys/time.h> -#endif - /****************/ /* Local Macros */ /****************/ +/* Size of a generated time string. + * Most time strings should be < 20 or so characters (max!) so this should be a + * safe size. Dynamically allocating the correct size would be painful. + */ +#define H5TIMER_TIME_STRING_LEN 1536 + +/* Conversion factors */ +#define H5_SEC_PER_DAY (double)(24.0F * 60.0F * 60.0F) +#define H5_SEC_PER_HOUR (double)(60.0F * 60.0F) +#define H5_SEC_PER_MIN (double)(60.0F) + /******************/ /* Local Typedefs */ @@ -76,104 +77,6 @@ /* Local Variables */ /*******************/ - -/*------------------------------------------------------------------------- - * Function: H5_timer_reset - * - * Purpose: Resets the timer struct to zero. Use this to reset a timer - * that's being used as an accumulator for summing times. - * - * Return: void - * - * Programmer: Robb Matzke - * Thursday, April 16, 1998 - * - *------------------------------------------------------------------------- - */ -void -H5_timer_reset (H5_timer_t *timer) -{ - HDassert(timer); - HDmemset(timer, 0, sizeof *timer); -} /* end H5_timer_reset() */ - - -/*------------------------------------------------------------------------- - * Function: H5_timer_begin - * - * Purpose: Initialize a timer to time something. - * - * Return: void - * - * Programmer: Robb Matzke - * Thursday, April 16, 1998 - * - *------------------------------------------------------------------------- - */ -void -H5_timer_begin (H5_timer_t *timer) -{ -#ifdef H5_HAVE_GETRUSAGE - struct rusage rusage; -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - struct timeval etime; -#endif - - HDassert(timer); - -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage (RUSAGE_SELF, &rusage); - timer->utime = (double)rusage.ru_utime.tv_sec + - ((double)rusage.ru_utime.tv_usec / (double)1e6F); - timer->stime = (double)rusage.ru_stime.tv_sec + - ((double)rusage.ru_stime.tv_usec / (double)1e6F); -#else - timer->utime = 0.0F; - timer->stime = 0.0F; -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday (&etime, NULL); - timer->etime = (double)etime.tv_sec + ((double)etime.tv_usec / (double)1e6F); -#else - timer->etime = 0.0F; -#endif -} /* end H5_timer_begin() */ - - -/*------------------------------------------------------------------------- - * Function: H5_timer_end - * - * Purpose: This function should be called at the end of a timed region. - * The SUM is an optional pointer which will accumulate times. - * TMS is the same struct that was passed to H5_timer_start(). - * On return, TMS will contain total times for the timed region. - * - * Return: void - * - * Programmer: Robb Matzke - * Thursday, April 16, 1998 - * - *------------------------------------------------------------------------- - */ -void -H5_timer_end (H5_timer_t *sum/*in,out*/, H5_timer_t *timer/*in,out*/) -{ - H5_timer_t now; - - HDassert(timer); - H5_timer_begin(&now); - - timer->utime = MAX((double)0.0F, now.utime - timer->utime); - timer->stime = MAX((double)0.0F, now.stime - timer->stime); - timer->etime = MAX((double)0.0F, now.etime - timer->etime); - - if (sum) { - sum->utime += timer->utime; - sum->stime += timer->stime; - sum->etime += timer->etime; - } -} /* end H5_timer_end() */ /*------------------------------------------------------------------------- @@ -209,32 +112,35 @@ H5_bandwidth(char *buf/*out*/, double nbytes, double nseconds) if(nseconds <= (double)0.0F) HDstrcpy(buf, " NaN"); else { - bw = nbytes/nseconds; + bw = nbytes / nseconds; if(H5_DBL_ABS_EQUAL(bw, (double)0.0F)) HDstrcpy(buf, "0.000 B/s"); else if(bw < (double)1.0F) HDsprintf(buf, "%10.4e", bw); else if(bw < (double)H5_KB) { HDsprintf(buf, "%05.4f", bw); - HDstrcpy(buf+5, " B/s"); + HDstrcpy(buf + 5, " B/s"); } else if(bw < (double)H5_MB) { HDsprintf(buf, "%05.4f", bw / (double)H5_KB); - HDstrcpy(buf+5, " kB/s"); + HDstrcpy(buf + 5, " kB/s"); } else if(bw < (double)H5_GB) { HDsprintf(buf, "%05.4f", bw / (double)H5_MB); - HDstrcpy(buf+5, " MB/s"); + HDstrcpy(buf + 5, " MB/s"); } else if(bw < (double)H5_TB) { HDsprintf(buf, "%05.4f", bw / (double)H5_GB); - HDstrcpy(buf+5, " GB/s"); + HDstrcpy(buf + 5, " GB/s"); } else if(bw < (double)H5_PB) { HDsprintf(buf, "%05.4f", bw / (double)H5_TB); - HDstrcpy(buf+5, " TB/s"); + HDstrcpy(buf + 5, " TB/s"); + } else if(bw < (double)H5_EB) { + HDsprintf(buf, "%05.4f", bw / (double)H5_PB); + HDstrcpy(buf + 5, " PB/s"); } else { HDsprintf(buf, "%10.4e", bw); if(HDstrlen(buf) > 10) HDsprintf(buf, "%10.3e", bw); - } - } + } /* end else-if */ + } /* end else */ } /* end H5_bandwidth() */ @@ -269,3 +175,488 @@ H5_now(void) return(now); } /* end H5_now() */ + +/*------------------------------------------------------------------------- + * Function: H5_now_usec + * + * Purpose: Retrieves the current time, as microseconds after the UNIX epoch. + * + * Return: # of microseconds from the epoch (can't fail) + * + * Programmer: Quincey Koziol + * Tuesday, November 28, 2006 + * + *------------------------------------------------------------------------- + */ +uint64_t +H5_now_usec(void) +{ + uint64_t now; /* Current time, in microseconds */ + +#if defined(H5_HAVE_CLOCK_GETTIME) + { + struct timespec ts; + + HDclock_gettime(CLOCK_MONOTONIC, &ts); + now = (uint64_t)(ts.tv_sec * (1000 * 1000)) + (uint64_t)(ts.tv_nsec / 1000); + } +#elif defined(H5_HAVE_GETTIMEOFDAY) + { + struct timeval now_tv; + + HDgettimeofday(&now_tv, NULL); + now = (uint64_t)(now_tv.tv_sec * (1000 * 1000)) + (uint64_t)now_tv.tv_usec; + } +#else /* H5_HAVE_GETTIMEOFDAY */ + now = (uint64_t)(HDtime(NULL) * (1000 * 1000)); +#endif /* H5_HAVE_GETTIMEOFDAY */ + + return(now); +} /* end H5_now_usec() */ + + +/*-------------------------------------------------------------------------- + * Function: H5_get_time + * + * Purpose: Get the current time, as the time of seconds after the UNIX epoch + * + * Return: Success: A non-negative time value + * Failure: -1.0 (in theory, can't currently fail) + * + * Programmer: Quincey Koziol + * October 05, 2016 + *-------------------------------------------------------------------------- + */ +double +H5_get_time(void) +{ + double ret_value = (double)0.0f; + + FUNC_ENTER_NOAPI_NOINIT_NOERR + +#if defined(H5_HAVE_CLOCK_GETTIME) + { + struct timespec ts; + + HDclock_gettime(CLOCK_MONOTONIC, &ts); + ret_value = (double)ts.tv_sec + ((double)ts.tv_nsec / (double)1000000000.0f); + } +#elif defined(H5_HAVE_GETTIMEOFDAY) + { + struct timeval now_tv; + + HDgettimeofday(&now_tv, NULL); + ret_value = (double)now_tv.tv_sec + ((double)now_tv.tv_usec / (double)1000000.0f); + } +#else + ret_value = (double)HDtime(NULL); +#endif + + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5_get_time() */ + + + +/*------------------------------------------------------------------------- + * Function: H5__timer_get_timevals + * + * Purpose: Internal platform-specific function to get time system, + * user and elapsed time values. + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Dana Robinson + * May 2011 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5__timer_get_timevals(H5_timevals_t *times /*in,out*/) +{ + /* Sanity check */ + HDassert(times); + + /* Windows call handles both system/user and elapsed times */ +#ifdef H5_HAVE_WIN32_API + if(H5_get_win32_times(times) < 0) { + times->elapsed = -1.0; + times->system = -1.0; + times->user = -1.0; + + return -1; + } /* end if */ +#else /* H5_HAVE_WIN32_API */ + + /************************* + * System and user times * + *************************/ +#if defined(H5_HAVE_GETRUSAGE) +{ + struct rusage res; + + if(HDgetrusage(RUSAGE_SELF, &res) < 0) + return -1; + times->system = (double)res.ru_stime.tv_sec + ((double)res.ru_stime.tv_usec / (double)1.0E6F); + times->user = (double)res.ru_utime.tv_sec + ((double)res.ru_utime.tv_usec / (double)1.0E6F); +} +#else + /* No suitable way to get system/user times */ + /* This is not an error condition, they just won't be available */ + times->system = -1.0; + times->user = -1.0; +#endif + + /**************** + * Elapsed time * + ****************/ + + times->elapsed = H5_get_time(); + +#endif /* H5_HAVE_WIN32_API */ + + return 0; +} /* end H5__timer_get_timevals() */ + + +/*------------------------------------------------------------------------- + * Function: H5_timer_init + * + * Purpose: Initialize a platform-independent timer. + * + * Timer usage is as follows: + * + * 1) Call H5_timer_init(), passing in a timer struct, to set + * up the timer. + * + * 2) Wrap any code you'd like to time with calls to + * H5_timer_start/stop(). For accurate timing, place these + * calls as close to the code of interest as possible. You + * can call start/stop multiple times on the same timer - + * when you do this, H5_timer_get_times() will return time + * values for the current/last session and + * H5_timer_get_total_times() will return the summed times + * of all sessions (see #3 and #4, below). + * + * 3) Use H5_timer_get_times() to get the current system, user + * and elapsed times from a running timer. If called on a + * stopped timer, this will return the time recorded at the + * stop point. + * + * 4) Call H5_timer_get_total_times() to get the total system, + * user and elapsed times recorded across multiple start/stop + * sessions. If called on a running timer, it will return the + * time recorded up to that point. On a stopped timer, it + * will return the time recorded at the stop point. + * + * NOTE: Obtaining a time point is not free! Keep in mind that + * the time functions make system calls and can have + * non-trivial overhead. If you call one of the get_time + * functions on a running timer, that overhead will be + * added to the reported times. + * + * 5) All times recorded will be in seconds. These can be + * converted into human-readable strings with the + * H5_timer_get_time_string() function. + * + * 6) A timer can be reset using by calling H5_timer_init() on + * it. This will set its state to 'stopped' and reset all + * accumulated times to zero. + * + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Dana Robinson + * May 2011 + * + *------------------------------------------------------------------------- + */ +herr_t +H5_timer_init(H5_timer_t *timer /*in,out*/) +{ + /* Sanity check */ + HDassert(timer); + + /* Initialize everything */ + HDmemset(timer, 0, sizeof(H5_timer_t)); + + return 0; +} /* end H5_timer_init() */ + + +/*------------------------------------------------------------------------- + * Function: H5_timer_start + * + * Purpose: Start tracking time in a platform-independent timer. + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Dana Robinson + * May 2011 + * + *------------------------------------------------------------------------- + */ +herr_t +H5_timer_start(H5_timer_t *timer /*in,out*/) +{ + /* Sanity check */ + HDassert(timer); + + /* Start the timer + * This sets the "initial" times to the system-defined start times. + */ + if(H5__timer_get_timevals(&(timer->initial)) < 0) + return -1; + + timer->is_running = TRUE; + + return 0; +} /* end H5_timer_start() */ + + +/*------------------------------------------------------------------------- + * Function: H5_timer_stop + * + * Purpose: Stop tracking time in a platform-independent timer. + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Dana Robinson + * May 2011 + * + *------------------------------------------------------------------------- + */ +herr_t +H5_timer_stop(H5_timer_t *timer /*in,out*/) +{ + /* Sanity check */ + HDassert(timer); + + /* Stop the timer */ + if(H5__timer_get_timevals(&(timer->final_interval)) < 0) + return -1; + + /* The "final" times are stored as intervals (final - initial) + * for more useful reporting to the user. + */ + timer->final_interval.elapsed = timer->final_interval.elapsed - timer->initial.elapsed; + timer->final_interval.system = timer->final_interval.system - timer->initial.system; + timer->final_interval.user = timer->final_interval.user - timer->initial.user; + + /* Add the intervals to the elapsed time */ + timer->total.elapsed += timer->final_interval.elapsed; + timer->total.system += timer->final_interval.system; + timer->total.user += timer->final_interval.user; + + timer->is_running = FALSE; + + return 0; +} /* end H5_timer_stop() */ + + +/*------------------------------------------------------------------------- + * Function: H5_timer_get_times + * + * Purpose: Get the system, user and elapsed times from a timer. These + * are the times since the timer was last started and will be + * 0.0 in a timer that has not been started since it was + * initialized. + * + * This function can be called either before or after + * H5_timer_stop() has been called. If it is called before the + * stop function, the timer will continue to run. + * + * The system and user times will be -1.0 if those times cannot + * be computed on a particular platform. The elapsed time will + * always be present. + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Dana Robinson + * May 2011 + * + *------------------------------------------------------------------------- + */ +herr_t +H5_timer_get_times(H5_timer_t timer, H5_timevals_t *times /*in,out*/) +{ + /* Sanity check */ + HDassert(times); + + if(timer.is_running) { + H5_timevals_t now; + + /* Get the current times and report the current intervals without + * stopping the timer. + */ + if(H5__timer_get_timevals(&now) < 0) + return -1; + + times->elapsed = now.elapsed - timer.initial.elapsed; + times->system = now.system - timer.initial.system; + times->user = now.user - timer.initial.user; + } /* end if */ + else { + times->elapsed = timer.final_interval.elapsed; + times->system = timer.final_interval.system; + times->user = timer.final_interval.user; + } /* end else */ + + return 0; +} /* end H5_timer_get_times() */ + + +/*------------------------------------------------------------------------- + * Function: H5_timer_get_total_times + * + * Purpose: Get the TOTAL system, user and elapsed times recorded by + * the timer since its initialization. This is the sum of all + * times recorded while the timer was running. + * + * These will be 0.0 in a timer that has not been started + * since it was initialized. Calling H5_timer_init() on a + * timer will reset these values to 0.0. + * + * This function can be called either before or after + * H5_timer_stop() has been called. If it is called before the + * stop function, the timer will continue to run. + * + * The system and user times will be -1.0 if those times cannot + * be computed on a particular platform. The elapsed time will + * always be present. + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Dana Robinson + * May 2011 + * + *------------------------------------------------------------------------- + */ +herr_t +H5_timer_get_total_times(H5_timer_t timer, H5_timevals_t *times /*in,out*/) +{ + /* Sanity check */ + HDassert(times); + + if(timer.is_running) { + H5_timevals_t now; + + /* Get the current times and report the current totals without + * stopping the timer. + */ + if(H5__timer_get_timevals(&now) < 0) + return -1; + + times->elapsed = timer.total.elapsed + (now.elapsed - timer.initial.elapsed); + times->system = timer.total.system + (now.system - timer.initial.system); + times->user = timer.total.user + (now.user - timer.initial.user); + } /* end if */ + else { + times->elapsed = timer.total.elapsed; + times->system = timer.total.system; + times->user = timer.total.user; + } /* end else */ + + return 0; +} /* end H5_timer_get_total_times() */ + + +/*------------------------------------------------------------------------- + * Function: H5_timer_get_time_string + * + * Purpose: Converts a time (in seconds) into a human-readable string + * suitable for log messages. + * + * Return: Success: The time string. + * + * The general format of the time string is: + * + * "N/A" time < 0 (invalid time) + * "%.f ns" time < 1 microsecond + * "%.1f us" time < 1 millisecond + * "%.1f ms" time < 1 second + * "%.2f s" time < 1 minute + * "%.f m %.f s" time < 1 hour + * "%.f h %.f m %.f s" longer times + * + * Failure: NULL + * + * Programmer: Dana Robinson + * May 2011 + * + *------------------------------------------------------------------------- + */ +char * +H5_timer_get_time_string(double seconds) +{ + char *s; /* output string */ + + /* Used when the time is greater than 59 seconds */ + double days; + double hours; + double minutes; + double remainder_sec; + + /* Extract larger time units from count of seconds */ + if(seconds > (double)60.0F) { + /* Set initial # of seconds */ + remainder_sec = seconds; + + /* Extract days */ + days = HDfloor(remainder_sec / H5_SEC_PER_DAY); + remainder_sec -= (days * H5_SEC_PER_DAY); + + /* Extract hours */ + hours = HDfloor(remainder_sec / H5_SEC_PER_HOUR); + remainder_sec -= (hours * H5_SEC_PER_HOUR); + + /* Extract minutes */ + minutes = HDfloor(remainder_sec / H5_SEC_PER_MIN); + remainder_sec -= (minutes * H5_SEC_PER_MIN); + + /* The # of seconds left is in remainder_sec */ + } /* end if */ + + /* Allocate */ + if(NULL == (s = (char *)HDcalloc(H5TIMER_TIME_STRING_LEN, sizeof(char)))) + return NULL; + + /* Do we need a format string? Some people might like a certain + * number of milliseconds or s before spilling to the next highest + * time unit. Perhaps this could be passed as an integer. + * (name? round_up_size? ?) + */ + if(seconds < (double)0.0F) + HDsprintf(s, "N/A"); + else if(H5_DBL_ABS_EQUAL((double)0.0F, seconds)) + HDsprintf(s, "0.0 s"); + else if(seconds < (double)1.0E-6F) + /* t < 1 us, Print time in ns */ + HDsprintf(s, "%.f ns", seconds * (double)1.0E9F); + else if(seconds < (double)1.0E-3F) + /* t < 1 ms, Print time in us */ + HDsprintf(s, "%.1f us", seconds * (double)1.0E6F); + else if(seconds < (double)1.0F) + /* t < 1 s, Print time in ms */ + HDsprintf(s, "%.1f ms", seconds * (double)1.0E3F); + else if(seconds < H5_SEC_PER_MIN) + /* t < 1 m, Print time in s */ + HDsprintf(s, "%.2f s", seconds); + else if(seconds < H5_SEC_PER_HOUR) + /* t < 1 h, Print time in m and s */ + HDsprintf(s, "%.f m %.f s", minutes, remainder_sec); + else if(seconds < H5_SEC_PER_DAY) + /* t < 1 d, Print time in h, m and s */ + HDsprintf(s, "%.f h %.f m %.f s", hours, minutes, remainder_sec); + else + /* Print time in d, h, m and s */ + HDsprintf(s, "%.f d %.f h %.f m %.f s", days, hours, minutes, remainder_sec); + + return s; +} /* end H5_timer_get_time_string() */ + diff --git a/src/H5trace.c b/src/H5trace.c index f9f96e2..db33673 100644 --- a/src/H5trace.c +++ b/src/H5trace.c @@ -127,8 +127,11 @@ H5_trace(const double *returning, const char *func, const char *type, ...) hssize_t i; void *vp = NULL; FILE *out = H5_debug_g.trace; - H5_timer_t event_time; - static H5_timer_t first_time = {0.0F, 0.0F, 0.0F}; + static hbool_t is_first_invocation = TRUE; + H5_timer_t function_timer; + H5_timevals_t function_times; + static H5_timer_t running_timer; + H5_timevals_t running_times; static int current_depth = 0; static int last_call_depth = 0; @@ -154,13 +157,18 @@ H5_trace(const double *returning, const char *func, const char *type, ...) } /* end else */ } /* end if */ - /* Get time for event */ - if(H5_DBL_ABS_EQUAL(first_time.etime, (double)0.0f)) - H5_timer_begin(&first_time); - if(H5_debug_g.ttimes) - H5_timer_begin(&event_time); - else - HDmemset(&event_time, 0, sizeof event_time); + /* Get time for event if the trace times flag is set */ + if(is_first_invocation && H5_debug_g.ttimes) { + /* start the library-wide timer */ + is_first_invocation = FALSE; + H5_timer_init(&running_timer); + H5_timer_start(&running_timer); + } /* end if */ + if(H5_debug_g.ttimes) { + /* start the timer for this function */ + H5_timer_init(&function_timer); + H5_timer_start(&function_timer); + } /* end if */ /* Print the first part of the line. This is the indication of the * nesting depth followed by the function name and either start of @@ -176,7 +184,9 @@ H5_trace(const double *returning, const char *func, const char *type, ...) if(H5_debug_g.ttimes) { char tmp[320]; - HDsprintf(tmp, "%.6f", event_time.etime-first_time.etime); + H5_timer_get_times(function_timer, &function_times); + H5_timer_get_times(running_timer, &running_times); + HDsprintf(tmp, "%.6f", (function_times.elapsed - running_times.elapsed)); HDfprintf(out, " %*s ", (int)HDstrlen(tmp), ""); } /* end if */ for(i = 0; i < current_depth; i++) @@ -191,8 +201,11 @@ H5_trace(const double *returning, const char *func, const char *type, ...) else { if(current_depth>last_call_depth) HDfputs(" = <delayed>\n", out); - if(H5_debug_g.ttimes) - HDfprintf(out, "@%.6f ", event_time.etime - first_time.etime); + if(H5_debug_g.ttimes) { + H5_timer_get_times(function_timer, &function_times); + H5_timer_get_times(running_timer, &running_times); + HDfprintf(out, "@%.6f ", (function_times.elapsed - running_times.elapsed)); + } /* end if */ for(i = 0; i < current_depth; i++) HDfputc('+', out); HDfprintf(out, "%*s%s(", 2*current_depth, "", func); @@ -298,7 +311,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'a': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -751,7 +764,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) break; default: - HDfprintf (out, "BADTYPE(D%c)", type[1]); + HDfprintf(out, "BADTYPE(D%c)", type[1]); goto error; } /* end switch */ break; @@ -1136,7 +1149,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 's': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -1213,7 +1226,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) break; default: - HDfprintf (out, "BADTYPE(H%c)", type[1]); + HDfprintf(out, "BADTYPE(H%c)", type[1]); goto error; } /* end switch */ break; @@ -1401,7 +1414,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) break; case H5I_NTYPES: - HDfprintf (out, "%ld (ntypes - error)", (long)obj); + HDfprintf(out, "%ld (ntypes - error)", (long)obj); break; default: @@ -1505,7 +1518,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) else { int is = HDva_arg(ap, int); - HDfprintf (out, "%d", is); + HDfprintf(out, "%d", is); asize[argno] = is; } /* end else */ break; @@ -1625,7 +1638,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) break; default: - HDfprintf (out, "BADTYPE(I%c)", type[1]); + HDfprintf(out, "BADTYPE(I%c)", type[1]); goto error; } /* end switch */ break; @@ -1651,7 +1664,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'l': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -1795,7 +1808,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) else { off_t offset = HDva_arg(ap, off_t); - HDfprintf (out, "%ld", (long)offset); + HDfprintf(out, "%ld", (long)offset); } /* end else */ break; @@ -2504,7 +2517,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) break; default: - HDfprintf (out, "BADTYPE(T%c)", type[1]); + HDfprintf(out, "BADTYPE(T%c)", type[1]); goto error; } /* end switch */ break; @@ -2520,9 +2533,9 @@ H5_trace(const double *returning, const char *func, const char *type, ...) htri_t tri_var = HDva_arg (ap, htri_t); if(tri_var>0) - HDfprintf (out, "TRUE"); + HDfprintf(out, "TRUE"); else if(!tri_var) - HDfprintf (out, "FALSE"); + HDfprintf(out, "FALSE"); else HDfprintf(out, "FAIL(%d)", (int)tri_var); } /* end else */ @@ -2579,7 +2592,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) break; default: - HDfprintf (out, "BADTYPE(U%c)", type[1]); + HDfprintf(out, "BADTYPE(U%c)", type[1]); goto error; } /* end switch */ break; @@ -2589,7 +2602,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'a': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2625,7 +2638,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'A': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2643,7 +2656,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'b': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2673,7 +2686,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'B': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2703,7 +2716,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'C': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2720,7 +2733,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'c': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2756,7 +2769,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'd': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2783,7 +2796,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'e': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2807,7 +2820,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'f': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2831,7 +2844,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'g': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2873,7 +2886,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'h': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2912,7 +2925,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'i': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2936,7 +2949,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'j': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2960,7 +2973,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'k': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -2987,7 +3000,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'l': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3014,7 +3027,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'L': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3038,7 +3051,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'm': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3065,7 +3078,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'n': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3095,7 +3108,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'o': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3131,7 +3144,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'r': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3158,7 +3171,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 's': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3181,7 +3194,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'S': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3238,7 +3251,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 't': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3286,7 +3299,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'u': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3304,7 +3317,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'v': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3409,7 +3422,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'w': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3435,7 +3448,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'x': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3453,7 +3466,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'y': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3489,7 +3502,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'z': if(ptr) { if(vp) - HDfprintf (out, "0x%p", vp); + HDfprintf(out, "0x%p", vp); else HDfprintf(out, "NULL"); } /* end if */ @@ -3686,9 +3699,12 @@ H5_trace(const double *returning, const char *func, const char *type, ...) } /* end for */ /* Display event time for return */ - if(returning && H5_debug_g.ttimes) - HDfprintf(out, " @%.6f [dt=%.6f]", (event_time.etime - first_time.etime), - (event_time.etime - *returning)); + if(returning && H5_debug_g.ttimes) { + H5_timer_get_times(function_timer, &function_times); + H5_timer_get_times(running_timer, &running_times); + HDfprintf(out, " @%.6f [dt=%.6f]", (function_times.elapsed - running_times.elapsed), + (function_times.elapsed - *returning)); + } /* end if */ error: HDva_end(ap); @@ -3696,10 +3712,13 @@ error: HDfprintf(out, ";\n"); else { last_call_depth = current_depth++; - HDfprintf (out, ")"); + HDfprintf(out, ")"); } /* end else */ HDfflush(out); - return event_time.etime; + if(H5_debug_g.ttimes) + return function_times.elapsed; + else + return 0.0F; } /* end H5_trace() */ diff --git a/src/H5win32defs.h b/src/H5win32defs.h index 00df56d..71162eb 100644 --- a/src/H5win32defs.h +++ b/src/H5win32defs.h @@ -20,6 +20,45 @@ * inside H5private.h * */ +#ifndef H5_HAVE_INTTYPES_H +/* The following definitions should be suitable for 64-bit Windows, which is + * LLP64, and for 32-bit Windows, which is ILP32. Those are the only + * platforms where <inttypes.h> is likely to be missing. VS2015 and later + * *may* provide these definitions. + */ +#ifdef _WIN64 +# define PRIdPTR "lld" +# define PRIoPTR "llo" +# define PRIuPTR "llu" +# define PRIxPTR "llx" +#else /* _WIN64 */ +# define PRIdPTR "ld" +# define PRIoPTR "lo" +# define PRIuPTR "lu" +# define PRIxPTR "lx" +#endif /* _WIN64 */ + +# define PRId8 "d" +# define PRIo8 "o" +# define PRIu8 "u" +# define PRIx8 "x" +# define PRId16 "d" +# define PRIo16 "o" +# define PRIu16 "u" +# define PRIx16 "x" +# define PRId32 "d" +# define PRIo32 "o" +# define PRIu32 "u" +# define PRIx32 "x" +# define PRId64 "lld" +# define PRIo64 "llo" +# define PRIu64 "llu" +# define PRIx64 "llx" +# define PRIdMAX "lld" +# define PRIoMAX "llo" +# define PRIuMAX "llu" +# define PRIxMAX "llx" +#endif /* * _MSC_VER = 1900 VS2015 @@ -41,11 +80,6 @@ typedef __int64 h5_stat_size_t; #define HDfstat(F,B) _fstati64(F,B) #define HDisatty(F) _isatty(F) -/* The isnan function needs underscore in VS2012 and earlier */ -#if (_MSC_VER <= 1700) - #define HDisnan(X) _isnan(X) -#endif /* MSC_VER < 1700 */ - #define HDgetcwd(S,Z) _getcwd(S,Z) #define HDgetdcwd(D,S,Z) _getdcwd(D,S,Z) #define HDgetdrive() _getdrive() @@ -111,8 +145,10 @@ struct timespec }; #endif /* MSC_VER < 1900 */ -/* The round functions do not exist in VS2012 and earlier */ #if (_MSC_VER <= 1700) +/* The isnan function needs underscore in VS2012 and earlier */ +#define HDisnan(X) _isnan(X) +/* The round functions do not exist in VS2012 and earlier */ #define HDllround(V) Wllround(V) #define HDllroundf(V) Wllroundf(V) #define HDlround(V) Wlround(V) |