[svn-r27794] Reintegration merge of features/autotools_rework branch with trunk

NOTES:

- Developers will have to run autogen.sh before building with the autotools.

- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.

- The generated error, overflow and version headers have been left in place.

- The generated H5LT parser code has also been left in place.

- There are no changes for CMake users at this time.

Tested on: h5committest

5 files changed, 119 insertions, 753 deletions

diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index dc6ba0a..2aa43f9 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -22,8 +22,8 @@ set (H5_HDRS
     ${HDF5_SRC_DIR}/hdf5.h
     ${HDF5_SRC_DIR}/H5api_adpt.h
     ${HDF5_SRC_DIR}/H5public.h
-    ${HDF5_SRC_DIR}/H5version.h
-    ${HDF5_SRC_DIR}/H5overflow.h
+    #${HDF5_SRC_DIR}/H5version.h
+    #${HDF5_SRC_DIR}/H5overflow.h
 )
 IDE_GENERATED_PROPERTIES ("H5" "${H5_HDRS}" "${H5_SRCS}" )
 
@@ -133,12 +133,12 @@ set (H5E_SRCS
 )
 
 set (H5E_HDRS
-    ${HDF5_SRC_DIR}/H5Edefin.h
-    ${HDF5_SRC_DIR}/H5Einit.h
+    #${HDF5_SRC_DIR}/H5Edefin.h
+    #${HDF5_SRC_DIR}/H5Einit.h
     ${HDF5_SRC_DIR}/H5Epkg.h
-    ${HDF5_SRC_DIR}/H5Epubgen.h
+    #${HDF5_SRC_DIR}/H5Epubgen.h
     ${HDF5_SRC_DIR}/H5Epublic.h
-    ${HDF5_SRC_DIR}/H5Eterm.h
+    #${HDF5_SRC_DIR}/H5Eterm.h
 )
 IDE_GENERATED_PROPERTIES ("H5E" "${H5E_HDRS}" "${H5E_SRCS}" )
 
@@ -801,57 +801,66 @@ add_custom_command (
     WORKING_DIRECTORY ${HDF5_BINARY_DIR}
 )
 
-if (GENERATE_ERROR_HEADERS)
+if (HDF5_GENERATE_HEADERS)
   find_package (Perl)
   if (PERL_FOUND)
     add_custom_command (
-        OUTPUT ${HDF5_BINARY_DIR}/H5Edefin.h
+        OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/H5Edefin.h ${CMAKE_CURRENT_BINARY_DIR}/H5Einit.h ${CMAKE_CURRENT_BINARY_DIR}/H5Epubgen.h ${CMAKE_CURRENT_BINARY_DIR}/H5Eterm.h
         PRE_BUILD
         COMMAND ${PERL_EXECUTABLE}
-        ARGS ${HDF5_SOURCE_DIR}/bin/make_err ${HDF5_SOURCE_DIR}/src/H5err.txt
+        ARGS ${HDF5_SOURCE_DIR}/bin/make_err ${HDF5_SOURCE_DIR}/src/H5err.txt ${CMAKE_CURRENT_BINARY_DIR}
         DEPENDS ${HDF5_SOURCE_DIR}/src/H5err.txt
         COMMENT " Creating err header"
     )
 
     add_custom_command (
-        OUTPUT ${HDF5_BINARY_DIR}/H5version.h
+        OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/H5version.h
         PRE_BUILD
         COMMAND ${PERL_EXECUTABLE}
-        ARGS ${HDF5_SOURCE_DIR}/bin/make_vers ${HDF5_SOURCE_DIR}/src/H5vers.txt
+        ARGS ${HDF5_SOURCE_DIR}/bin/make_vers ${HDF5_SOURCE_DIR}/src/H5vers.txt ${CMAKE_CURRENT_BINARY_DIR}
         DEPENDS ${HDF5_SOURCE_DIR}/src/H5vers.txt
        COMMENT " Creating API version macro"
     )
 
     add_custom_command (
-        OUTPUT ${HDF5_BINARY_DIR}/H5overflow.h
+        OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/H5overflow.h
         PRE_BUILD
         COMMAND ${PERL_EXECUTABLE}
-        ARGS ${HDF5_SOURCE_DIR}/bin/make_overflow ${HDF5_SOURCE_DIR}/src/H5overflow.txt
+        ARGS ${HDF5_SOURCE_DIR}/bin/make_overflow ${HDF5_SOURCE_DIR}/src/H5overflow.txt ${CMAKE_CURRENT_BINARY_DIR}
         DEPENDS ${HDF5_SOURCE_DIR}/src/H5overflow.txt
         COMMENT " Creating Assignment overflow macro"
     )
 
     add_custom_target(run_perl_scripts ALL
-        DEPENDS ${HDF5_BINARY_DIR}/H5Edefin.h ${HDF5_BINARY_DIR}/H5version.h ${HDF5_BINARY_DIR}/H5overflow.h
+        DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/H5Edefin.h ${CMAKE_CURRENT_BINARY_DIR}/H5version.h ${CMAKE_CURRENT_BINARY_DIR}/H5overflow.h
     )
   else (PERL_FOUND)
     message (STATUS "Cannot generate headers - perl not found")
   endif (PERL_FOUND)
-endif (GENERATE_ERROR_HEADERS)
+endif (HDF5_GENERATE_HEADERS)
 
 #-----------------------------------------------------------------------------
 # Add H5Tinit source to build - generated by H5Detect/CMake at configure time
 #-----------------------------------------------------------------------------
 set (common_SRCS ${common_SRCS} ${HDF5_BINARY_DIR}/H5Tinit.c)
-set_source_files_properties (${HDF5_BINARY_DIR}/H5Tinit.c GENERATED)
 set (common_SRCS ${common_SRCS} ${HDF5_BINARY_DIR}/H5lib_settings.c)
-set_source_files_properties (${HDF5_BINARY_DIR}/H5lib_settings.c GENERATED)
-set (common_SRCS ${common_SRCS} ${HDF5_BINARY_DIR}/H5Edefin.h)
-set_source_files_properties (${HDF5_BINARY_DIR}/H5Edefin.h GENERATED)
-set (common_SRCS ${common_SRCS} ${HDF5_BINARY_DIR}/H5version.h)
-set_source_files_properties (${HDF5_BINARY_DIR}/H5version.h GENERATED)
-set (common_SRCS ${common_SRCS} ${HDF5_BINARY_DIR}/H5overflow.h)
-set_source_files_properties (${HDF5_BINARY_DIR}/H5overflow.h GENERATED)
+
+if (HDF5_GENERATE_HEADERS)
+  set (common_SRCS ${common_SRCS} ${CMAKE_CURRENT_BINARY_DIR}/H5Edefin.h)
+  set (common_SRCS ${common_SRCS} ${CMAKE_CURRENT_BINARY_DIR}/H5Einit.h)
+  set (common_SRCS ${common_SRCS} ${CMAKE_CURRENT_BINARY_DIR}/H5Epubgen.h)
+  set (common_SRCS ${common_SRCS} ${CMAKE_CURRENT_BINARY_DIR}/H5Eterm.h)
+  set (common_SRCS ${common_SRCS} ${CMAKE_CURRENT_BINARY_DIR}/H5version.h)
+  set (common_SRCS ${common_SRCS} ${CMAKE_CURRENT_BINARY_DIR}/H5overflow.h)
+  include_directories(${CMAKE_CURRENT_BINARY_DIR})
+else (HDF5_GENERATE_HEADERS)
+  set (common_SRCS ${common_SRCS} ${HDF5_SRC_DIR}/H5Edefin.h)
+  set (common_SRCS ${common_SRCS} ${HDF5_SRC_DIR}/H5Einit.h)
+  set (common_SRCS ${common_SRCS} ${HDF5_SRC_DIR}/H5Epubgen.h)
+  set (common_SRCS ${common_SRCS} ${HDF5_SRC_DIR}/H5Eterm.h)
+  set (common_SRCS ${common_SRCS} ${HDF5_SRC_DIR}/H5version.h)
+  set (common_SRCS ${common_SRCS} ${HDF5_SRC_DIR}/H5overflow.h)
+endif (HDF5_GENERATE_HEADERS)
 
 add_library (${HDF5_LIB_TARGET} STATIC ${common_SRCS} ${H5_PUBLIC_HEADERS} ${H5_PRIVATE_HEADERS})
 TARGET_C_PROPERTIES (${HDF5_LIB_TARGET} STATIC " " " ")
diff --git a/src/H5T.c b/src/H5T.c
index e1051f2..c51e78e 100644
--- a/src/H5T.c
+++ b/src/H5T.c
@@ -1214,6 +1214,7 @@ H5T__init_package(void)
     status |= H5T_register(H5T_PERS_HARD, "dbl_uint", native_double, native_uint, H5T__conv_double_uint, H5AC_ind_dxpl_id, FALSE);
     status |= H5T_register(H5T_PERS_HARD, "ldbl_uint", native_ldouble, native_uint, H5T__conv_ldouble_uint, H5AC_ind_dxpl_id, FALSE);
 
+    /* From floats to long */
     status |= H5T_register(H5T_PERS_HARD, "flt_long", native_float, native_long, H5T__conv_float_long, H5AC_ind_dxpl_id, FALSE);
     status |= H5T_register(H5T_PERS_HARD, "dbl_long", native_double, native_long, H5T__conv_double_long, H5AC_ind_dxpl_id, FALSE);
     status |= H5T_register(H5T_PERS_HARD, "ldbl_long", native_ldouble, native_long, H5T__conv_ldouble_long, H5AC_ind_dxpl_id, FALSE);
diff --git a/src/H5config.h.in b/src/H5config.h.in
deleted file mode 100644
index 9363813..0000000
--- a/src/H5config.h.in
+++ /dev/null
@@ -1,641 +0,0 @@
-/* src/H5config.h.in.  Generated from configure.ac by autoheader.  */
-
-/* Define if building universal (internal helper macro) */
-#undef AC_APPLE_UNIVERSAL_BUILD
-
-/* Define if the memory buffers being written to disk should be cleared before
-   writing. */
-#undef CLEAR_MEMORY
-
-/* Define if C++ compiler recognizes offsetof */
-#undef CXX_HAVE_OFFSETOF
-
-/* Define the default plugins path to compile */
-#undef DEFAULT_PLUGINDIR
-
-/* Define if `dev_t' is a scalar */
-#undef DEV_T_IS_SCALAR
-
-/* Define to dummy `main' function (if any) required to link to the Fortran
-   libraries. */
-#undef FC_DUMMY_MAIN
-
-/* Define if F77 and FC dummy `main' functions are identical. */
-#undef FC_DUMMY_MAIN_EQ_F77
-
-/* Define to a macro mangling the given C identifier (in lower and upper
-   case), which must not contain underscores, for linking with Fortran. */
-#undef FC_FUNC
-
-/* As FC_FUNC, but for C identifiers containing underscores. */
-#undef FC_FUNC_
-
-/* Define if Fortran C_LONG_DOUBLE is different from C_DOUBLE */
-#undef FORTRAN_C_LONG_DOUBLE_IS_UNIQUE
-
-/* Define if we have Fortran C_LONG_DOUBLE */
-#undef FORTRAN_HAVE_C_LONG_DOUBLE
-
-/* Define if we have Fortran intrinsic C_SIZEOF */
-#undef FORTRAN_HAVE_C_SIZEOF
-
-/* Define if we have Fortran intrinsic SIZEOF */
-#undef FORTRAN_HAVE_SIZEOF
-
-/* Define if we have Fortran intrinsic STORAGE_SIZE */
-#undef FORTRAN_HAVE_STORAGE_SIZE
-
-/* Determine the size of C long double */
-#undef FORTRAN_SIZEOF_LONG_DOUBLE
-
-/* Define Fortran compiler ID */
-#undef Fortran_COMPILER_ID
-
-/* Define valid Fortran INTEGER KINDs */
-#undef H5CONFIG_F_IKIND
-
-/* Define number of valid Fortran INTEGER KINDs */
-#undef H5CONFIG_F_NUM_IKIND
-
-/* Define number of valid Fortran REAL KINDs */
-#undef H5CONFIG_F_NUM_RKIND
-
-/* Define valid Fortran REAL KINDs */
-#undef H5CONFIG_F_RKIND
-
-/* Define valid Fortran REAL KINDs Sizeof */
-#undef H5CONFIG_F_RKIND_SIZEOF
-
-/* Define to 1 if you have the `alarm' function. */
-#undef HAVE_ALARM
-
-/* Define to 1 if you have the `asprintf' function. */
-#undef HAVE_ASPRINTF
-
-/* Define if the __attribute__(()) extension is present */
-#undef HAVE_ATTRIBUTE
-
-/* Define if the compiler understands C99 designated initialization of structs
-   and unions */
-#undef HAVE_C99_DESIGNATED_INITIALIZER
-
-/* Define if the compiler understands the __func__ keyword */
-#undef HAVE_C99_FUNC
-
-/* Define to 1 if you have the `clock_gettime' function. */
-#undef HAVE_CLOCK_GETTIME
-
-/* Define if the function stack tracing code is to be compiled in */
-#undef HAVE_CODESTACK
-
-/* Define if Darwin or Mac OS X */
-#undef HAVE_DARWIN
-
-/* Define to 1 if you have the `difftime' function. */
-#undef HAVE_DIFFTIME
-
-/* Define if the direct I/O virtual file driver (VFD) should be compiled */
-#undef HAVE_DIRECT
-
-/* Define to 1 if you have the <dirent.h> header file. */
-#undef HAVE_DIRENT_H
-
-/* Define to 1 if you have the <dlfcn.h> header file. */
-#undef HAVE_DLFCN_H
-
-/* Define to 1 if you have the <dmalloc.h> header file. */
-#undef HAVE_DMALLOC_H
-
-/* Define if library information should be embedded in the executables */
-#undef HAVE_EMBEDDED_LIBINFO
-
-/* Define to 1 if you have the <features.h> header file. */
-#undef HAVE_FEATURES_H
-
-/* Define if support for deflate (zlib) filter is enabled */
-#undef HAVE_FILTER_DEFLATE
-
-/* Define if support for szip filter is enabled */
-#undef HAVE_FILTER_SZIP
-
-/* Determine if __float128 is available */
-#undef HAVE_FLOAT128
-
-/* Define to 1 if you have the `fork' function. */
-#undef HAVE_FORK
-
-/* Define to 1 if you have the `frexpf' function. */
-#undef HAVE_FREXPF
-
-/* Define to 1 if you have the `frexpl' function. */
-#undef HAVE_FREXPL
-
-/* Define to 1 if you have the `fseeko' function. */
-#undef HAVE_FSEEKO
-
-/* Define to 1 if you have the `fseeko64' function. */
-#undef HAVE_FSEEKO64
-
-/* Define to 1 if you have the `fstat64' function. */
-#undef HAVE_FSTAT64
-
-/* Define to 1 if you have the `ftello' function. */
-#undef HAVE_FTELLO
-
-/* Define to 1 if you have the `ftello64' function. */
-#undef HAVE_FTELLO64
-
-/* Define to 1 if you have the `ftruncate64' function. */
-#undef HAVE_FTRUNCATE64
-
-/* Define if the compiler understands the __FUNCTION__ keyword */
-#undef HAVE_FUNCTION
-
-/* Determine if INTEGER*16 is available */
-#undef HAVE_Fortran_INTEGER_SIZEOF_16
-
-/* Define to 1 if you have the `GetConsoleScreenBufferInfo' function. */
-#undef HAVE_GETCONSOLESCREENBUFFERINFO
-
-/* Define to 1 if you have the `gethostname' function. */
-#undef HAVE_GETHOSTNAME
-
-/* Define to 1 if you have the `getpwuid' function. */
-#undef HAVE_GETPWUID
-
-/* Define to 1 if you have the `getrusage' function. */
-#undef HAVE_GETRUSAGE
-
-/* Define to 1 if you have the `gettextinfo' function. */
-#undef HAVE_GETTEXTINFO
-
-/* Define to 1 if you have the `gettimeofday' function. */
-#undef HAVE_GETTIMEOFDAY
-
-/* Define if the compiler understands inline */
-#undef HAVE_INLINE
-
-/* Define if library will contain instrumentation to detect correct
-   optimization operation */
-#undef HAVE_INSTRUMENTED_LIBRARY
-
-/* Define to 1 if you have the <inttypes.h> header file. */
-#undef HAVE_INTTYPES_H
-
-/* Define to 1 if you have the `ioctl' function. */
-#undef HAVE_IOCTL
-
-/* Define to 1 if you have the <io.h> header file. */
-#undef HAVE_IO_H
-
-/* Define to 1 if you have the `dl' library (-ldl). */
-#undef HAVE_LIBDL
-
-/* Define to 1 if you have the `dmalloc' library (-ldmalloc). */
-#undef HAVE_LIBDMALLOC
-
-/* Define to 1 if you have the `m' library (-lm). */
-#undef HAVE_LIBM
-
-/* Define to 1 if you have the `mpe' library (-lmpe). */
-#undef HAVE_LIBMPE
-
-/* Define to 1 if you have the `pthread' library (-lpthread). */
-#undef HAVE_LIBPTHREAD
-
-/* Define to 1 if you have the `sz' library (-lsz). */
-#undef HAVE_LIBSZ
-
-/* Define to 1 if you have the `ws2_32' library (-lws2_32). */
-#undef HAVE_LIBWS2_32
-
-/* Define to 1 if you have the `z' library (-lz). */
-#undef HAVE_LIBZ
-
-/* Define to 1 if you have the `longjmp' function. */
-#undef HAVE_LONGJMP
-
-/* Define to 1 if you have the `lseek64' function. */
-#undef HAVE_LSEEK64
-
-/* Define to 1 if you have the `lstat' function. */
-#undef HAVE_LSTAT
-
-/* Define to 1 if you have the <mach/mach_time.h> header file. */
-#undef HAVE_MACH_MACH_TIME_H
-
-/* Define to 1 if you have the <memory.h> header file. */
-#undef HAVE_MEMORY_H
-
-/* Define if we have MPE support */
-#undef HAVE_MPE
-
-/* Define to 1 if you have the <mpe.h> header file. */
-#undef HAVE_MPE_H
-
-/* Define if `MPI_Comm_c2f' and `MPI_Comm_f2c' exists */
-#undef HAVE_MPI_MULTI_LANG_Comm
-
-/* Define if `MPI_Info_c2f' and `MPI_Info_f2c' exists */
-#undef HAVE_MPI_MULTI_LANG_Info
-
-/* Define if we have parallel support */
-#undef HAVE_PARALLEL
-
-/* Define to 1 if you have the <pthread.h> header file. */
-#undef HAVE_PTHREAD_H
-
-/* Define to 1 if you have the <quadmath.h> header file. */
-#undef HAVE_QUADMATH_H
-
-/* Define to 1 if you have the `random' function. */
-#undef HAVE_RANDOM
-
-/* Define to 1 if you have the `rand_r' function. */
-#undef HAVE_RAND_R
-
-/* Define to 1 if you have the `setjmp' function. */
-#undef HAVE_SETJMP
-
-/* Define to 1 if you have the <setjmp.h> header file. */
-#undef HAVE_SETJMP_H
-
-/* Define to 1 if you have the `setsysinfo' function. */
-#undef HAVE_SETSYSINFO
-
-/* Define to 1 if you have the `siglongjmp' function. */
-#undef HAVE_SIGLONGJMP
-
-/* Define to 1 if you have the `signal' function. */
-#undef HAVE_SIGNAL
-
-/* Define to 1 if you have the `sigprocmask' function. */
-#undef HAVE_SIGPROCMASK
-
-/* Define to 1 if you have the `sigsetjmp' function. */
-#undef HAVE_SIGSETJMP
-
-/* Define to 1 if you have the `snprintf' function. */
-#undef HAVE_SNPRINTF
-
-/* Define to 1 if you have the `srandom' function. */
-#undef HAVE_SRANDOM
-
-/* Define to 1 if you have the `stat64' function. */
-#undef HAVE_STAT64
-
-/* Define if `struct stat' has the `st_blocks' field */
-#undef HAVE_STAT_ST_BLOCKS
-
-/* Define to 1 if you have the <stddef.h> header file. */
-#undef HAVE_STDDEF_H
-
-/* Define to 1 if you have the <stdint.h> header file. */
-#undef HAVE_STDINT_H
-
-/* Define to 1 if you have the <stdlib.h> header file. */
-#undef HAVE_STDLIB_H
-
-/* Define to 1 if you have the `strdup' function. */
-#undef HAVE_STRDUP
-
-/* Define to 1 if you have the <strings.h> header file. */
-#undef HAVE_STRINGS_H
-
-/* Define to 1 if you have the <string.h> header file. */
-#undef HAVE_STRING_H
-
-/* Define if `struct text_info' is defined */
-#undef HAVE_STRUCT_TEXT_INFO
-
-/* Define if `struct videoconfig' is defined */
-#undef HAVE_STRUCT_VIDEOCONFIG
-
-/* Define to 1 if you have the `symlink' function. */
-#undef HAVE_SYMLINK
-
-/* Define to 1 if you have the `system' function. */
-#undef HAVE_SYSTEM
-
-/* Define to 1 if you have the <sys/ioctl.h> header file. */
-#undef HAVE_SYS_IOCTL_H
-
-/* Define to 1 if you have the <sys/resource.h> header file. */
-#undef HAVE_SYS_RESOURCE_H
-
-/* Define to 1 if you have the <sys/socket.h> header file. */
-#undef HAVE_SYS_SOCKET_H
-
-/* Define to 1 if you have the <sys/stat.h> header file. */
-#undef HAVE_SYS_STAT_H
-
-/* Define to 1 if you have the <sys/timeb.h> header file. */
-#undef HAVE_SYS_TIMEB_H
-
-/* Define to 1 if you have the <sys/time.h> header file. */
-#undef HAVE_SYS_TIME_H
-
-/* Define to 1 if you have the <sys/types.h> header file. */
-#undef HAVE_SYS_TYPES_H
-
-/* Define to 1 if you have the <szlib.h> header file. */
-#undef HAVE_SZLIB_H
-
-/* Define if we have thread safe support */
-#undef HAVE_THREADSAFE
-
-/* Define if `timezone' is a global variable */
-#undef HAVE_TIMEZONE
-
-/* Define if the ioctl TIOCGETD is defined */
-#undef HAVE_TIOCGETD
-
-/* Define if the ioctl TIOGWINSZ is defined */
-#undef HAVE_TIOCGWINSZ
-
-/* Define to 1 if you have the `tmpfile' function. */
-#undef HAVE_TMPFILE
-
-/* Define if `tm_gmtoff' is a member of `struct tm' */
-#undef HAVE_TM_GMTOFF
-
-/* Define to 1 if you have the <unistd.h> header file. */
-#undef HAVE_UNISTD_H
-
-/* Define to 1 if you have the `vasprintf' function. */
-#undef HAVE_VASPRINTF
-
-/* Define to 1 if you have the `vsnprintf' function. */
-#undef HAVE_VSNPRINTF
-
-/* Define to 1 if you have the `waitpid' function. */
-#undef HAVE_WAITPID
-
-/* Define if your system has window style path name. */
-#undef HAVE_WINDOW_PATH
-
-/* Define to 1 if you have the <winsock2.h> header file. */
-#undef HAVE_WINSOCK2_H
-
-/* Define to 1 if you have the <zlib.h> header file. */
-#undef HAVE_ZLIB_H
-
-/* Define to 1 if you have the `_getvideoconfig' function. */
-#undef HAVE__GETVIDEOCONFIG
-
-/* Define to 1 if you have the `_scrsize' function. */
-#undef HAVE__SCRSIZE
-
-/* Define if the compiler understands __inline */
-#undef HAVE___INLINE
-
-/* Define if the compiler understands __inline__ */
-#undef HAVE___INLINE__
-
-/* Define if HDF5's high-level library headers should be included in hdf5.h */
-#undef INCLUDE_HL
-
-/* Define if your system can convert long double to (unsigned) long long
-   values correctly. */
-#undef LDOUBLE_TO_LLONG_ACCURATE
-
-/* Define if your system converts long double to (unsigned) long values with
-   special algorithm. */
-#undef LDOUBLE_TO_LONG_SPECIAL
-
-/* Define if your system can convert (unsigned) long long to long double
-   values correctly. */
-#undef LLONG_TO_LDOUBLE_CORRECT
-
-/* Define if your system can convert (unsigned) long to long double values
-   with special algorithm. */
-#undef LONG_TO_LDOUBLE_SPECIAL
-
-/* Define to the sub-directory in which libtool stores uninstalled libraries.
-   */
-#undef LT_OBJDIR
-
-/* Define if the metadata trace file code is to be compiled in */
-#undef METADATA_TRACE_FILE
-
-/* Define if we can violate pointer alignment restrictions */
-#undef NO_ALIGNMENT_RESTRICTIONS
-
-/* Define if deprecated public API symbols are disabled */
-#undef NO_DEPRECATED_SYMBOLS
-
-/* Name of package */
-#undef PACKAGE
-
-/* Define to the address where bug reports for this package should be sent. */
-#undef PACKAGE_BUGREPORT
-
-/* Define to the full name of this package. */
-#undef PACKAGE_NAME
-
-/* Define to the full name and version of this package. */
-#undef PACKAGE_STRING
-
-/* Define to the one symbol short name of this package. */
-#undef PACKAGE_TARNAME
-
-/* Define to the home page for this package. */
-#undef PACKAGE_URL
-
-/* Define to the version of this package. */
-#undef PACKAGE_VERSION
-
-/* Determine the maximum decimal precision in C */
-#undef PAC_C_MAX_REAL_PRECISION
-
-/* Define Fortran Maximum Real Decimal Precision */
-#undef PAC_FC_MAX_REAL_PRECISION
-
-/* Width for printf() for type `long long' or `__int64', use `ll' */
-#undef PRINTF_LL_WIDTH
-
-/* The size of `char', as computed by sizeof. */
-#undef SIZEOF_CHAR
-
-/* The size of `double', as computed by sizeof. */
-#undef SIZEOF_DOUBLE
-
-/* The size of `float', as computed by sizeof. */
-#undef SIZEOF_FLOAT
-
-/* The size of `int', as computed by sizeof. */
-#undef SIZEOF_INT
-
-/* The size of `int16_t', as computed by sizeof. */
-#undef SIZEOF_INT16_T
-
-/* The size of `int32_t', as computed by sizeof. */
-#undef SIZEOF_INT32_T
-
-/* The size of `int64_t', as computed by sizeof. */
-#undef SIZEOF_INT64_T
-
-/* The size of `int8_t', as computed by sizeof. */
-#undef SIZEOF_INT8_T
-
-/* The size of `int_fast16_t', as computed by sizeof. */
-#undef SIZEOF_INT_FAST16_T
-
-/* The size of `int_fast32_t', as computed by sizeof. */
-#undef SIZEOF_INT_FAST32_T
-
-/* The size of `int_fast64_t', as computed by sizeof. */
-#undef SIZEOF_INT_FAST64_T
-
-/* The size of `int_fast8_t', as computed by sizeof. */
-#undef SIZEOF_INT_FAST8_T
-
-/* The size of `int_least16_t', as computed by sizeof. */
-#undef SIZEOF_INT_LEAST16_T
-
-/* The size of `int_least32_t', as computed by sizeof. */
-#undef SIZEOF_INT_LEAST32_T
-
-/* The size of `int_least64_t', as computed by sizeof. */
-#undef SIZEOF_INT_LEAST64_T
-
-/* The size of `int_least8_t', as computed by sizeof. */
-#undef SIZEOF_INT_LEAST8_T
-
-/* The size of `long', as computed by sizeof. */
-#undef SIZEOF_LONG
-
-/* The size of `long double', as computed by sizeof. */
-#undef SIZEOF_LONG_DOUBLE
-
-/* The size of `long long', as computed by sizeof. */
-#undef SIZEOF_LONG_LONG
-
-/* The size of `off64_t', as computed by sizeof. */
-#undef SIZEOF_OFF64_T
-
-/* The size of `off_t', as computed by sizeof. */
-#undef SIZEOF_OFF_T
-
-/* The size of `ptrdiff_t', as computed by sizeof. */
-#undef SIZEOF_PTRDIFF_T
-
-/* The size of `short', as computed by sizeof. */
-#undef SIZEOF_SHORT
-
-/* The size of `size_t', as computed by sizeof. */
-#undef SIZEOF_SIZE_T
-
-/* The size of `ssize_t', as computed by sizeof. */
-#undef SIZEOF_SSIZE_T
-
-/* The size of `uint16_t', as computed by sizeof. */
-#undef SIZEOF_UINT16_T
-
-/* The size of `uint32_t', as computed by sizeof. */
-#undef SIZEOF_UINT32_T
-
-/* The size of `uint64_t', as computed by sizeof. */
-#undef SIZEOF_UINT64_T
-
-/* The size of `uint8_t', as computed by sizeof. */
-#undef SIZEOF_UINT8_T
-
-/* The size of `uint_fast16_t', as computed by sizeof. */
-#undef SIZEOF_UINT_FAST16_T
-
-/* The size of `uint_fast32_t', as computed by sizeof. */
-#undef SIZEOF_UINT_FAST32_T
-
-/* The size of `uint_fast64_t', as computed by sizeof. */
-#undef SIZEOF_UINT_FAST64_T
-
-/* The size of `uint_fast8_t', as computed by sizeof. */
-#undef SIZEOF_UINT_FAST8_T
-
-/* The size of `uint_least16_t', as computed by sizeof. */
-#undef SIZEOF_UINT_LEAST16_T
-
-/* The size of `uint_least32_t', as computed by sizeof. */
-#undef SIZEOF_UINT_LEAST32_T
-
-/* The size of `uint_least64_t', as computed by sizeof. */
-#undef SIZEOF_UINT_LEAST64_T
-
-/* The size of `uint_least8_t', as computed by sizeof. */
-#undef SIZEOF_UINT_LEAST8_T
-
-/* The size of `unsigned', as computed by sizeof. */
-#undef SIZEOF_UNSIGNED
-
-/* The size of `_Quad', as computed by sizeof. */
-#undef SIZEOF__QUAD
-
-/* The size of `__float128', as computed by sizeof. */
-#undef SIZEOF___FLOAT128
-
-/* The size of `__int64', as computed by sizeof. */
-#undef SIZEOF___INT64
-
-/* Define to 1 if you have the ANSI C header files. */
-#undef STDC_HEADERS
-
-/* Define if strict file format checks are enabled */
-#undef STRICT_FORMAT_CHECKS
-
-/* Define if your system supports pthread_attr_setscope(&attribute,
-   PTHREAD_SCOPE_SYSTEM) call. */
-#undef SYSTEM_SCOPE_THREADS
-
-/* Define to 1 if you can safely include both <sys/time.h> and <time.h>. */
-#undef TIME_WITH_SYS_TIME
-
-/* Define using v1.6 public API symbols by default */
-#undef USE_16_API_DEFAULT
-
-/* Define if a memory checking tool will be used on the library, to cause
-   library to be very picky about memory operations and also disable the
-   internal free list manager code. */
-#undef USING_MEMCHECKER
-
-/* Version number of package */
-#undef VERSION
-
-/* Data accuracy is prefered to speed during data conversions */
-#undef WANT_DATA_ACCURACY
-
-/* Check exception handling functions during data conversions */
-#undef WANT_DCONV_EXCEPTION
-
-/* Define WORDS_BIGENDIAN to 1 if your processor stores words with the most
-   significant byte first (like Motorola and SPARC, unlike Intel). */
-#if defined AC_APPLE_UNIVERSAL_BUILD
-# if defined __BIG_ENDIAN__
-#  define WORDS_BIGENDIAN 1
-# endif
-#else
-# ifndef WORDS_BIGENDIAN
-#  undef WORDS_BIGENDIAN
-# endif
-#endif
-
-/* Number of bits in a file offset, on hosts where this is settable. */
-#undef _FILE_OFFSET_BITS
-
-/* Define for large files, on AIX-style hosts. */
-#undef _LARGE_FILES
-
-/* Define to empty if `const' does not conform to ANSI C. */
-#undef const
-
-/* Define to `long int' if <sys/types.h> does not define. */
-#undef off_t
-
-/* Define to `long' if <sys/types.h> does not define. */
-#undef ptrdiff_t
-
-/* Define to `unsigned long' if <sys/types.h> does not define. */
-#undef size_t
-
-/* Define to `long' if <sys/types.h> does not define. */
-#undef ssize_t
diff --git a/src/H5trace.c b/src/H5trace.c
index 428d2b2..41f3418 100644
--- a/src/H5trace.c
+++ b/src/H5trace.c
@@ -15,11 +15,11 @@
 
 /*-------------------------------------------------------------------------
  *
- * Created:		H5trace.c
- *			Aug 21 2006
- *			Quincey Koziol <koziol@hdfgroup.org>
+ * Created:     H5trace.c
+ *              Aug 21 2006
+ *              Quincey Koziol <koziol@hdfgroup.org>
  *
- * Purpose:		Internal code for tracing API calls
+ * Purpose:     Internal code for tracing API calls
  *
  *-------------------------------------------------------------------------
  */
@@ -29,16 +29,15 @@
 /****************/
 #define H5I_FRIEND		/*suppress error about including H5Ipkg	  */
 
-
 /***********/
 /* Headers */
 /***********/
-#include "H5private.h"		/* Generic Functions			*/
-#include "H5Dprivate.h"		/* Datasets				*/
-#include "H5Eprivate.h"		/* Error handling		  	*/
-#include "H5FDprivate.h"	/* File drivers				*/
-#include "H5Ipkg.h"		/* IDs			  		*/
-#include "H5MMprivate.h"	/* Memory management			*/
+#include "H5private.h"      /* Generic Functions                        */
+#include "H5Dprivate.h"     /* Datasets                                 */
+#include "H5Eprivate.h"     /* Error handling                           */
+#include "H5FDprivate.h"    /* File drivers                             */
+#include "H5Ipkg.h"         /* IDs                                      */
+#include "H5MMprivate.h"    /* Memory management                        */
 
 #ifdef H5_HAVE_PARALLEL
 /* datatypes of predefined drivers needed by H5_trace() */
@@ -83,36 +82,36 @@
 
 
 /*-------------------------------------------------------------------------
- * Function:	H5_trace
+ * Function:    H5_trace
  *
- * Purpose:	This function is called whenever an API function is called
- *		and tracing is turned on.  If RETURNING is non-zero then
- *		the caller is about to return and RETURNING points to the
+ * Purpose:     This function is called whenever an API function is called
+ *              and tracing is turned on.  If RETURNING is non-zero then
+ *              the caller is about to return and RETURNING points to the
  *              time for the corresponding function call event.  Otherwise
  *              we print the function name and the arguments.
  *
- *		The TYPE argument is a string which gives the type of each of
- *		the following argument pairs.  Each type is zero or more
- *		asterisks (one for each level of indirection, although some
- *		types have one level of indirection already implied) followed
- *		by either one letter (lower case) or two letters (first one
- *		uppercase).
+ *              The TYPE argument is a string which gives the type of each of
+ *              the following argument pairs.  Each type is zero or more
+ *              asterisks (one for each level of indirection, although some
+ *              types have one level of indirection already implied) followed
+ *              by either one letter (lower case) or two letters (first one
+ *              uppercase).
  *
- *		The variable argument list consists of pairs of values. Each
- *		pair is a string which is the formal argument name in the
- *		calling function, followed by the argument value.  The type
- *		of the argument value is given by the TYPE string.
+ *              The variable argument list consists of pairs of values. Each
+ *              pair is a string which is the formal argument name in the
+ *              calling function, followed by the argument value.  The type
+ *              of the argument value is given by the TYPE string.
  *
- * Note:	The TYPE string is meant to be terse and is generated by a
- *		separate perl script.
+ * Note:        The TYPE string is meant to be terse and is generated by a
+ *              separate perl script.
  *
- * WARNING:	DO NOT CALL ANY HDF5 FUNCTION THAT CALLS FUNC_ENTER(). DOING
- *		SO MAY CAUSE H5_trace() TO BE INVOKED RECURSIVELY OR MAY
- *		CAUSE LIBRARY INITIALIZATIONS THAT ARE NOT DESIRED.
+ * WARNING:     DO NOT CALL ANY HDF5 FUNCTION THAT CALLS FUNC_ENTER(). DOING
+ *              SO MAY CAUSE H5_trace() TO BE INVOKED RECURSIVELY OR MAY
+ *              CAUSE LIBRARY INITIALIZATIONS THAT ARE NOT DESIRED.
  *
- * Return:	Execution time for an API call
+ * Return:      Execution time for an API call
  *
- * Programmer:	Robb Matzke
+ * Programmer:  Robb Matzke
  *              Tuesday, June 16, 1998
  *
  *-------------------------------------------------------------------------
@@ -120,14 +119,14 @@
 double
 H5_trace(const double *returning, const char *func, const char *type, ...)
 {
-    va_list		ap;
-    char		buf[64], *rest;
-    const char		*argname;
-    int			argno = 0, ptr, asize_idx;
-    hssize_t		asize[16];
-    hssize_t		i;
-    void		*vp = NULL;
-    FILE		*out = H5_debug_g.trace;
+    va_list             ap;
+    char                buf[64], *rest;
+    const char          *argname;
+    int                 argno = 0, ptr, asize_idx;
+    hssize_t            asize[16];
+    hssize_t            i;
+    void                *vp = NULL;
+    FILE                *out = H5_debug_g.trace;
     H5_timer_t          event_time;
     static H5_timer_t   first_time = {0.0F, 0.0F, 0.0F};
     static int          current_depth = 0;
@@ -206,48 +205,48 @@ H5_trace(const double *returning, const char *func, const char *type, ...)
 
     /* Parse the argument types */
     for(argno = 0; *type; argno++, type += (HDisupper(*type) ? 2 : 1)) {
-	/* Count levels of indirection */
-	for(ptr = 0; '*' == *type; type++)
+        /* Count levels of indirection */
+        for(ptr = 0; '*' == *type; type++)
             ptr++;
-	if('[' == *type) {
-	    if('a' == type[1]) {
-		asize_idx = (int)HDstrtol(type + 2, &rest, 10);
+        if('[' == *type) {
+            if('a' == type[1]) {
+                asize_idx = (int)HDstrtol(type + 2, &rest, 10);
                 HDassert(0 <= asize_idx && asize_idx < (int) NELMTS(asize));
-		HDassert(']'==*rest);
-		type = rest + 1;
-	    } else {
-		rest = (char *)HDstrchr(type, ']');
-		HDassert(rest);
-		type = rest + 1;
-		asize_idx = -1;
-	    }
-	} /* end if */
+                HDassert(']'==*rest);
+                type = rest + 1;
+            } else {
+                rest = (char *)HDstrchr(type, ']');
+                HDassert(rest);
+                type = rest + 1;
+                asize_idx = -1;
+            }
+        } /* end if */
         else
-	    asize_idx = -1;
-
-	/*
-	 * The argument name.  Leave off the `_id' part.  If the argument
-	 * name is the null pointer then don't print the argument or the
-	 * following `='.  This is used for return values.
-	 */
-	argname = va_arg(ap, char *); /*lint !e64 Type mismatch not really occuring */
-	if(argname) {
-	    unsigned n = (unsigned)MAX (0, (int)HDstrlen(argname) - 3); /*lint !e666 Allow expression with side effects */
-
-	    if(!HDstrcmp(argname + n, "_id")) {
-		HDstrncpy(buf, argname, (size_t)MIN((int)sizeof(buf) - 1, n));
-		buf[MIN((int)sizeof(buf) - 1, n)] = '\0';
-		argname = buf;
-	    } /* end if */
-	    fprintf(out, "%s%s=", argno?", ":"", argname);
-	} /* end if */
+            asize_idx = -1;
+
+        /*
+         * The argument name.  Leave off the `_id' part.  If the argument
+         * name is the null pointer then don't print the argument or the
+         * following `='.  This is used for return values.
+         */
+        argname = va_arg(ap, char *); /*lint !e64 Type mismatch not really occuring */
+        if(argname) {
+            unsigned n = (unsigned)MAX (0, (int)HDstrlen(argname) - 3); /*lint !e666 Allow expression with side effects */
+
+            if(!HDstrcmp(argname + n, "_id")) {
+                HDstrncpy(buf, argname, (size_t)MIN((int)sizeof(buf) - 1, n));
+                buf[MIN((int)sizeof(buf) - 1, n)] = '\0';
+                argname = buf;
+            } /* end if */
+                fprintf(out, "%s%s=", argno?", ":"", argname);
+        } /* end if */
         else
-	    argname = "";
+            argname = "";
 
-	/* The value */
-	if(ptr)
+        /* The value */
+        if(ptr)
             vp = va_arg(ap, void *); /*lint !e64 Type mismatch not really occuring */
-	switch(type[0]) {
+        switch(type[0]) {
             case 'a':
                 if(ptr) {
                     if(vp)
@@ -268,7 +267,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...)
                         fprintf(out, "0x%lx", (unsigned long)vp);
                     else
                         fprintf(out, "NULL");
-                } /* end if */
+                    } /* end if */
                 else {
                     hbool_t bool_var = va_arg(ap, hbool_t); /*lint !e732 Loss of sign not really occuring */
 
@@ -2554,7 +2553,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...)
                 else
                     fprintf(out, "BADTYPE(%c)", type[0]);
                 goto error;
-	} /* end switch */
+        } /* end switch */
     } /* end for */
 
     /* Display event time for return */
@@ -2565,10 +2564,10 @@ H5_trace(const double *returning, const char *func, const char *type, ...)
 error:
     va_end(ap);
     if(returning)
-	fprintf(out, ";\n");
+        fprintf(out, ";\n");
     else {
-	last_call_depth = current_depth++;
-	fprintf (out, ")");
+        last_call_depth = current_depth++;
+        fprintf (out, ")");
     } /* end else */
     HDfflush(out);
 
diff --git a/src/Makefile.in b/src/Makefile.in
index 7cf8ec3..3955eeb 100644
--- a/src/Makefile.in
+++ b/src/Makefile.in
@@ -102,9 +102,8 @@ DIST_COMMON = $(top_srcdir)/config/commence.am \
 	$(top_srcdir)/config/lt_vers.am \
 	$(top_srcdir)/config/conclude.am $(srcdir)/Makefile.in \
 	$(srcdir)/Makefile.am $(srcdir)/H5config.h.in \
-	$(top_srcdir)/bin/mkinstalldirs $(srcdir)/libhdf5.settings.in \
-	$(top_srcdir)/bin/depcomp $(include_HEADERS) \
-	$(top_srcdir)/bin/test-driver COPYING
+	$(srcdir)/libhdf5.settings.in $(top_srcdir)/bin/depcomp \
+	$(include_HEADERS) $(top_srcdir)/bin/test-driver COPYING
 noinst_PROGRAMS = H5detect$(EXEEXT) H5make_libsettings$(EXEEXT)
 TESTS =
 subdir = src
@@ -113,7 +112,7 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/aclocal_cxx.m4 \
 	$(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
-mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+mkinstalldirs = $(install_sh) -d
 CONFIG_HEADER = H5config.h $(top_builddir)/fortran/src/H5config_f.inc
 CONFIG_CLEAN_FILES = libhdf5.settings
 CONFIG_CLEAN_VPATH_FILES =
@@ -200,7 +199,7 @@ am_libhdf5_la_OBJECTS = H5.lo H5checksum.lo H5dbg.lo H5system.lo \
 	H5Topaque.lo H5Torder.lo H5Tpad.lo H5Tprecis.lo H5Tstrpad.lo \
 	H5Tvisit.lo H5Tvlen.lo H5TS.lo H5VM.lo H5WB.lo H5Z.lo \
 	H5Zdeflate.lo H5Zfletcher32.lo H5Znbit.lo H5Zshuffle.lo \
-	H5Zszip.lo H5Zscaleoffset.lo H5Ztrans.lo
+	H5Zscaleoffset.lo H5Zszip.lo H5Ztrans.lo
 libhdf5_la_OBJECTS = $(am_libhdf5_la_OBJECTS)
 AM_V_lt = $(am__v_lt_@AM_V@)
 am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@)
@@ -468,7 +467,6 @@ AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
 AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
 AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
 AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
-AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AUTOCONF = @AUTOCONF@
 AUTOHEADER = @AUTOHEADER@
@@ -824,8 +822,8 @@ libhdf5_la_SOURCES = H5.c H5checksum.c H5dbg.c H5system.c H5timer.c H5trace.c \
         H5Topaque.c \
         H5Torder.c \
         H5Tpad.c H5Tprecis.c H5Tstrpad.c H5Tvisit.c H5Tvlen.c H5TS.c H5VM.c H5WB.c H5Z.c  \
-        H5Zdeflate.c H5Zfletcher32.c H5Znbit.c H5Zshuffle.c H5Zszip.c  \
-        H5Zscaleoffset.c H5Ztrans.c
+        H5Zdeflate.c H5Zfletcher32.c H5Znbit.c H5Zshuffle.c \
+        H5Zscaleoffset.c H5Zszip.c H5Ztrans.c
 
 
 # Public headers