diff options
| author | jhendersonHDF <jhenderson@hdfgroup.org> | 2022-05-08 06:04:32 (GMT) |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-05-08 06:04:32 (GMT) |
| commit | c0f314ad03f5ef0b4366ee625c83a7955a9ea87f (patch) | |
| tree | 1aff05e5b992bc1f15b3a1a9b14c325c9ae64c98 /src | |
| parent | 555e79d05f3fb778c9345b3abd4e55a1f177df90 (diff) | |
| download | hdf5-c0f314ad03f5ef0b4366ee625c83a7955a9ea87f.zip hdf5-c0f314ad03f5ef0b4366ee625c83a7955a9ea87f.tar.gz hdf5-c0f314ad03f5ef0b4366ee625c83a7955a9ea87f.tar.bz2 | |
[1.10 Merge] Hdf5 1 10 warnings merge (#1754)
* Warnings fixes (#1680)
* Clean stack size warnings in sio_engine (#1687)
* Fixes stack size warnings in tcoords.c (#1688)
* Address some warnings from casting away of const (#1684)
* Fixes stack size warnings in dtransform (#1696)
* Fixes stack size warnings in set_extent test (#1698)
* Be a bit safer with signed arithmetic, thus quieting some signed-overflow warnings from GCC (#1706)
* Avoid a signed overflow: check the range of `entry_ptr->age` before
increasing it instead of increasing it and then checking the range.
This quiets a GCC warning.
* Avoid the potential for signed overflow by rewriting expressions
`MAX(0, fwidth - n)` as `MAX(n, fwidth) - n` for various `n`.
This change quiets some GCC warnings.
* Change some local variables that cannot take sensible negative values
from signed to unsigned. This quiets GCC warnings about potential
signed overflow.
* In a handful of instances, check the range of a signed integer before
increasing/decreasing it, just in case the increase/decrease overflows.
This quiets a handful of GCC signed-overflow warnings.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix object size warnings in cache.c test (#1701)
* Fix some const cast and stack/static object size warnings (#1700)
* Fix various warnings
* Move HDfree_const to H5private.h for wider use
* Print output from all ranks in parallel tests on allocation failure
* Move const pointer freeing macro to h5test.h for now
* Fixes a bug where t_cache fails due to a string size being too small (#1720)
* Fixes a bug where t_cache fails due to a string size being too small
Recent warning reductions led to an incorrect string size being passed
to h5_fileaccess, causing the test to silently fail. In addition to
fixing the bug, the test will now fail noisily on setup failures.
* Updates the t_cache test to fail noisily on setup errors
* Fix a few Clang sanitizer warnings (#1727)
* Stop lying about H5S_t const-ness (#1209)
Hyperslabs can be reworked inside several H5S callbacks, making H5S_t
non-const in some places where it is marked const. This change switches
these incorrectly const H5S_t pointer parameters and variables to
non-const where appropriate.
* Fix a few warnings after recent H5S const-related changes (#1225)
* Adjustments for HDF5 1.10
* Hdf5 1 12 Miscellaneous warnings fixes (#1718)
* Fixes const issues in the version 2 B-trees (#1172)
The operations that were changed are fundamentally not const since the
shadow operation can modify the node structure when SWMR is in use.
* Quiets const warning in H5RS code (#1181)
* Avoid calling H5Ropen_object with a misaligned H5R_ref_t: copy the (#1171)
* Avoid calling H5Ropen_object with a misaligned H5R_ref_t: copy the
raw H5R_ref_t bytes to a heap buffer that's known to have the right
alignment.
* Committing clang-format changes
* Use an automatic H5R_ref_t instead of malloc'ing one. Go ahead and
initialize the H5R_ref_t to all-0s so that arbitrary stack content
doesn't foul things up. Bail out with an error if `size` exceeds
`sizeof(H5R_ref_t)`.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Miscellaneous warnings fixes
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: David Young <dyoung@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix several warnings (#747)
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: David Young <dyoung@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Diffstat (limited to 'src')
40 files changed, 544 insertions, 484 deletions
diff --git a/src/H5B2int.c b/src/H5B2int.c index 610da6c..ab43a5a 100644 --- a/src/H5B2int.c +++ b/src/H5B2int.c @@ -52,9 +52,9 @@ /********************/ /* Local Prototypes */ /********************/ -static herr_t H5B2__update_child_flush_depends(H5B2_hdr_t *hdr, unsigned depth, - const H5B2_node_ptr_t *node_ptrs, unsigned start_idx, - unsigned end_idx, void *old_parent, void *new_parent); +static herr_t H5B2__update_child_flush_depends(H5B2_hdr_t *hdr, unsigned depth, H5B2_node_ptr_t *node_ptrs, + unsigned start_idx, unsigned end_idx, void *old_parent, + void *new_parent); /*********************/ /* Package Variables */ @@ -1617,7 +1617,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5B2__iterate_node(H5B2_hdr_t *hdr, uint16_t depth, const H5B2_node_ptr_t *curr_node, void *parent, +H5B2__iterate_node(H5B2_hdr_t *hdr, uint16_t depth, H5B2_node_ptr_t *curr_node, void *parent, H5B2_operator_t op, void *op_data) { const H5AC_class_t *curr_node_class = NULL; /* Pointer to current node's class info */ @@ -1642,8 +1642,7 @@ H5B2__iterate_node(H5B2_hdr_t *hdr, uint16_t depth, const H5B2_node_ptr_t *curr_ /* Lock the current B-tree node */ if (NULL == - (internal = H5B2__protect_internal(hdr, parent, (H5B2_node_ptr_t *)curr_node, depth, FALSE, - H5AC__READ_ONLY_FLAG))) /* Casting away const OK -QAK */ + (internal = H5B2__protect_internal(hdr, parent, curr_node, depth, FALSE, H5AC__READ_ONLY_FLAG))) HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to protect B-tree internal node") /* Set up information about current node */ @@ -1739,8 +1738,8 @@ done: *------------------------------------------------------------------------- */ herr_t -H5B2__delete_node(H5B2_hdr_t *hdr, uint16_t depth, const H5B2_node_ptr_t *curr_node, void *parent, - H5B2_remove_t op, void *op_data) +H5B2__delete_node(H5B2_hdr_t *hdr, uint16_t depth, H5B2_node_ptr_t *curr_node, void *parent, H5B2_remove_t op, + void *op_data) { const H5AC_class_t *curr_node_class = NULL; /* Pointer to current node's class info */ void * node = NULL; /* Pointers to current node */ @@ -1759,8 +1758,7 @@ H5B2__delete_node(H5B2_hdr_t *hdr, uint16_t depth, const H5B2_node_ptr_t *curr_n /* Lock the current B-tree node */ if (NULL == - (internal = H5B2__protect_internal(hdr, parent, (H5B2_node_ptr_t *)curr_node, depth, FALSE, - H5AC__NO_FLAGS_SET))) /* Casting away const OK -QAK */ + (internal = H5B2__protect_internal(hdr, parent, curr_node, depth, FALSE, H5AC__NO_FLAGS_SET))) HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to protect B-tree internal node") /* Set up information about current node */ @@ -1824,7 +1822,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5B2__node_size(H5B2_hdr_t *hdr, uint16_t depth, const H5B2_node_ptr_t *curr_node, void *parent, +H5B2__node_size(H5B2_hdr_t *hdr, uint16_t depth, H5B2_node_ptr_t *curr_node, void *parent, hsize_t *btree_size) { H5B2_internal_t *internal = NULL; /* Pointer to internal node */ @@ -1839,8 +1837,8 @@ H5B2__node_size(H5B2_hdr_t *hdr, uint16_t depth, const H5B2_node_ptr_t *curr_nod HDassert(depth > 0); /* Lock the current B-tree node */ - if (NULL == (internal = H5B2__protect_internal(hdr, parent, (H5B2_node_ptr_t *)curr_node, depth, FALSE, - H5AC__READ_ONLY_FLAG))) /* Casting away const OK -QAK */ + if (NULL == + (internal = H5B2__protect_internal(hdr, parent, curr_node, depth, FALSE, H5AC__READ_ONLY_FLAG))) HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to protect B-tree internal node") /* Recursively descend into child nodes, if we are above the "twig" level in the B-tree */ @@ -1910,7 +1908,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5B2__update_flush_depend(H5B2_hdr_t *hdr, unsigned depth, const H5B2_node_ptr_t *node_ptr, void *old_parent, +H5B2__update_flush_depend(H5B2_hdr_t *hdr, unsigned depth, H5B2_node_ptr_t *node_ptr, void *old_parent, void *new_parent) { const H5AC_class_t *child_class; /* Pointer to child node's class info */ @@ -1941,9 +1939,8 @@ H5B2__update_flush_depend(H5B2_hdr_t *hdr, unsigned depth, const H5B2_node_ptr_t H5B2_internal_t *child_int; /* Protect child */ - if (NULL == (child_int = H5B2__protect_internal( - hdr, new_parent, (H5B2_node_ptr_t *)node_ptr, (uint16_t)(depth - 1), FALSE, - H5AC__NO_FLAGS_SET))) /* Casting away const OK -QAK */ + if (NULL == (child_int = H5B2__protect_internal(hdr, new_parent, node_ptr, (uint16_t)(depth - 1), + FALSE, H5AC__NO_FLAGS_SET))) HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to protect B-tree internal node") child_class = H5AC_BT2_INT; child = child_int; @@ -2010,7 +2007,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5B2__update_child_flush_depends(H5B2_hdr_t *hdr, unsigned depth, const H5B2_node_ptr_t *node_ptrs, +H5B2__update_child_flush_depends(H5B2_hdr_t *hdr, unsigned depth, H5B2_node_ptr_t *node_ptrs, unsigned start_idx, unsigned end_idx, void *old_parent, void *new_parent) { unsigned u; /* Local index variable */ diff --git a/src/H5B2pkg.h b/src/H5B2pkg.h index 8d620cc..66d04fa 100644 --- a/src/H5B2pkg.h +++ b/src/H5B2pkg.h @@ -321,7 +321,7 @@ extern const H5B2_class_t *const H5B2_client_class_g[H5B2_NUM_BTREE_ID]; /* Generic routines */ H5_DLL herr_t H5B2__create_flush_depend(H5AC_info_t *parent_entry, H5AC_info_t *child_entry); -H5_DLL herr_t H5B2__update_flush_depend(H5B2_hdr_t *hdr, unsigned depth, const H5B2_node_ptr_t *node_ptr, +H5_DLL herr_t H5B2__update_flush_depend(H5B2_hdr_t *hdr, unsigned depth, H5B2_node_ptr_t *node_ptr, void *old_parent, void *new_parent); H5_DLL herr_t H5B2__destroy_flush_depend(H5AC_info_t *parent_entry, H5AC_info_t *child_entry); @@ -390,9 +390,9 @@ H5_DLL herr_t H5B2__update_leaf(H5B2_hdr_t *hdr, H5B2_node_ptr_t *curr_node_ptr, void *op_data); /* Routines for iterating over nodes/records */ -H5_DLL herr_t H5B2__iterate_node(H5B2_hdr_t *hdr, uint16_t depth, const H5B2_node_ptr_t *curr_node, - void *parent, H5B2_operator_t op, void *op_data); -H5_DLL herr_t H5B2__node_size(H5B2_hdr_t *hdr, uint16_t depth, const H5B2_node_ptr_t *curr_node, void *parent, +H5_DLL herr_t H5B2__iterate_node(H5B2_hdr_t *hdr, uint16_t depth, H5B2_node_ptr_t *curr_node, void *parent, + H5B2_operator_t op, void *op_data); +H5_DLL herr_t H5B2__node_size(H5B2_hdr_t *hdr, uint16_t depth, H5B2_node_ptr_t *curr_node, void *parent, hsize_t *op_data); /* Routines for locating records */ @@ -423,8 +423,8 @@ H5_DLL herr_t H5B2__remove_leaf_by_idx(H5B2_hdr_t *hdr, H5B2_node_ptr_t *curr_no void *op_data); /* Routines for deleting nodes */ -H5_DLL herr_t H5B2__delete_node(H5B2_hdr_t *hdr, uint16_t depth, const H5B2_node_ptr_t *curr_node, - void *parent, H5B2_remove_t op, void *op_data); +H5_DLL herr_t H5B2__delete_node(H5B2_hdr_t *hdr, uint16_t depth, H5B2_node_ptr_t *curr_node, void *parent, + H5B2_remove_t op, void *op_data); /* Debugging routines for dumping file structures */ H5_DLL herr_t H5B2__hdr_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, diff --git a/src/H5Bdbg.c b/src/H5Bdbg.c index 23d0a8f..de07442 100644 --- a/src/H5Bdbg.c +++ b/src/H5Bdbg.c @@ -110,20 +110,20 @@ H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, const H5 */ for (u = 0; u < bt->nchildren; u++) { HDfprintf(stream, "%*sChild %d...\n", indent, "", u); - HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent + 3, "", MAX(0, fwidth - 3), + HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent + 3, "", MAX(3, fwidth) - 3, "Address:", bt->child[u]); /* If there is a key debugging routine, use it to display the left & right keys */ if (type->debug_key) { /* Decode the 'left' key & print it */ - HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3), "Left Key:"); + HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(3, fwidth) - 3, "Left Key:"); HDassert(H5B_NKEY(bt, shared, u)); - (void)(type->debug_key)(stream, indent + 6, MAX(0, fwidth - 6), H5B_NKEY(bt, shared, u), udata); + (void)(type->debug_key)(stream, indent + 6, MAX(6, fwidth) - 6, H5B_NKEY(bt, shared, u), udata); /* Decode the 'right' key & print it */ - HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3), "Right Key:"); + HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(3, fwidth) - 3, "Right Key:"); HDassert(H5B_NKEY(bt, shared, u + 1)); - (void)(type->debug_key)(stream, indent + 6, MAX(0, fwidth - 6), H5B_NKEY(bt, shared, u + 1), + (void)(type->debug_key)(stream, indent + 6, MAX(6, fwidth) - 6, H5B_NKEY(bt, shared, u + 1), udata); } /* end if */ } /* end for */ diff --git a/src/H5Cimage.c b/src/H5Cimage.c index 491253f..b505033 100644 --- a/src/H5Cimage.c +++ b/src/H5Cimage.c @@ -2737,10 +2737,11 @@ H5C__prep_for_file_close__setup_image_entries_array(H5C_t *cache_ptr) */ if (entry_ptr->type->id == H5AC_PREFETCHED_ENTRY_ID) { image_entries[u].type_id = entry_ptr->prefetch_type_id; - image_entries[u].age = entry_ptr->age + 1; - if (image_entries[u].age > H5AC__CACHE_IMAGE__ENTRY_AGEOUT__MAX) + if (entry_ptr->age >= H5AC__CACHE_IMAGE__ENTRY_AGEOUT__MAX) image_entries[u].age = H5AC__CACHE_IMAGE__ENTRY_AGEOUT__MAX; + else + image_entries[u].age = entry_ptr->age + 1; } /* end if */ else { image_entries[u].type_id = entry_ptr->type->id; diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c index dac0db6..e6a53f4 100644 --- a/src/H5Dchunk.c +++ b/src/H5Dchunk.c @@ -256,14 +256,13 @@ typedef struct H5D_chunk_coll_fill_info_t { static herr_t H5D__chunk_construct(H5F_t *f, H5D_t *dset); static herr_t H5D__chunk_init(H5F_t *f, const H5D_t *dset, hid_t dapl_id); static herr_t H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space, - H5D_chunk_map_t *fm); + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm); static herr_t H5D__chunk_io_init_selections(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, H5D_chunk_map_t *fm); static herr_t H5D__chunk_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t *fm); + H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm); static herr_t H5D__chunk_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t *fm); + H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm); static herr_t H5D__chunk_flush(H5D_t *dset); static herr_t H5D__chunk_io_term(const H5D_chunk_map_t *fm); static herr_t H5D__chunk_dest(H5D_t *dset); @@ -321,13 +320,24 @@ static int H5D__chunk_dump_index_cb(const H5D_chunk_rec_t *chunk_rec, void *_uda /*********************/ /* Chunked storage layout I/O ops */ -const H5D_layout_ops_t H5D_LOPS_CHUNK[1] = { - {H5D__chunk_construct, H5D__chunk_init, H5D__chunk_is_space_alloc, H5D__chunk_is_data_cached, - H5D__chunk_io_init, H5D__chunk_read, H5D__chunk_write, +const H5D_layout_ops_t H5D_LOPS_CHUNK[1] = {{ + H5D__chunk_construct, /* construct */ + H5D__chunk_init, /* init */ + H5D__chunk_is_space_alloc, /* is_space_alloc */ + H5D__chunk_is_data_cached, /* is_data_cached */ + H5D__chunk_io_init, /* io_init */ + H5D__chunk_read, /* ser_read */ + H5D__chunk_write, /* ser_write */ #ifdef H5_HAVE_PARALLEL - H5D__chunk_collective_read, H5D__chunk_collective_write, -#endif /* H5_HAVE_PARALLEL */ - NULL, NULL, H5D__chunk_flush, H5D__chunk_io_term, H5D__chunk_dest}}; + H5D__chunk_collective_read, /* par_read */ + H5D__chunk_collective_write, /* par_write */ +#endif + NULL, /* readvv */ + NULL, /* writevv */ + H5D__chunk_flush, /* flush */ + H5D__chunk_io_term, /* io_term */ + H5D__chunk_dest /* dest */ +}}; /*******************/ /* Local Variables */ @@ -1049,7 +1059,7 @@ H5D__chunk_is_data_cached(const H5D_shared_t *shared_dset) */ static herr_t H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t *fm) + H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm) { const H5D_t *dataset = io_info->dset; /* Local pointer to dataset info */ hssize_t old_offset[H5O_LAYOUT_NDIMS]; /* Old selection offset */ @@ -1080,7 +1090,7 @@ H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf * speed up hyperslab calculations by removing the extra checks and/or * additions involving the offset and the hyperslab selection -QAK) */ - if ((file_space_normalized = H5S_hyper_normalize_offset((H5S_t *)file_space, old_offset)) < 0) + if ((file_space_normalized = H5S_hyper_normalize_offset(file_space, old_offset)) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "unable to normalize selection") /* Decide the number of chunks in each dimension */ @@ -1117,8 +1127,7 @@ done: fm->mem_space = NULL; if (file_space_normalized == TRUE) - if (H5S_hyper_denormalize_offset((H5S_t *)file_space, old_offset) < - 0) /* (Casting away const OK -QAK) */ + if (H5S_hyper_denormalize_offset(file_space, old_offset) < 0) HDONE_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't denormalize selection") FUNC_LEAVE_NOAPI(ret_value) @@ -1345,15 +1354,16 @@ done: *------------------------------------------------------------------------- */ void * -H5D__chunk_mem_alloc(size_t size, const H5O_pline_t *pline) +H5D__chunk_mem_alloc(size_t size, void *pline) { - void *ret_value = NULL; /* Return value */ + H5O_pline_t *_pline = (H5O_pline_t *)pline; + void * ret_value = NULL; /* Return value */ FUNC_ENTER_STATIC_NOERR HDassert(size); - if (pline && pline->nused) + if (_pline && _pline->nused) ret_value = H5MM_malloc(size); else ret_value = H5FL_BLK_MALLOC(chunk, size); @@ -1376,12 +1386,14 @@ H5D__chunk_mem_alloc(size_t size, const H5O_pline_t *pline) *------------------------------------------------------------------------- */ void * -H5D__chunk_mem_xfree(void *chk, const H5O_pline_t *pline) +H5D__chunk_mem_xfree(void *chk, const void *pline) { + const H5O_pline_t *_pline = (const H5O_pline_t *)pline; + FUNC_ENTER_STATIC_NOERR if (chk) { - if (pline && pline->nused) + if (_pline && _pline->nused) H5MM_xfree(chk); else chk = H5FL_BLK_FREE(chunk, chk); @@ -1398,9 +1410,9 @@ H5D__chunk_mem_xfree(void *chk, const H5O_pline_t *pline) *------------------------------------------------------------------------- */ void -H5D__chunk_mem_free(void *chk, const H5O_pline_t *_pline) +H5D__chunk_mem_free(void *chk, void *pline) { - (void)H5D__chunk_mem_xfree(chk, _pline); + (void)H5D__chunk_mem_xfree(chk, pline); } /*------------------------------------------------------------------------- @@ -1552,8 +1564,7 @@ H5D__create_chunk_map_single(H5D_chunk_map_t *fm, const H5D_io_info_t chunk_info->fspace_shared = TRUE; /* Just point at the memory dataspace & selection */ - /* (Casting away const OK -QAK) */ - chunk_info->mspace = (H5S_t *)fm->mem_space; + chunk_info->mspace = fm->mem_space; /* Indicate that the chunk's memory dataspace is shared */ chunk_info->mspace_shared = TRUE; @@ -1828,7 +1839,6 @@ H5D__create_chunk_file_map_hyper(H5D_chunk_map_t *fm, const H5D_io_info_t /* Iterate through each chunk in the dataset */ while (sel_points) { /* Check for intersection of current chunk and file selection */ - /* (Casting away const OK - QAK) */ if (TRUE == H5S_SELECT_INTERSECT_BLOCK(fm->file_space, coords, end)) { H5D_chunk_info_t *new_chunk_info; /* chunk information to insert into skip list */ hsize_t chunk_points; /* Number of elements in chunk selection */ @@ -1987,8 +1997,7 @@ H5D__create_chunk_mem_map_hyper(const H5D_chunk_map_t *fm) HDassert(chunk_info); /* Just point at the memory dataspace & selection */ - /* (Casting away const OK -QAK) */ - chunk_info->mspace = (H5S_t *)fm->mem_space; + chunk_info->mspace = fm->mem_space; /* Indicate that the chunk's memory space is shared */ chunk_info->mspace_shared = TRUE; @@ -2110,8 +2119,7 @@ H5D__create_chunk_mem_map_1d(const H5D_chunk_map_t *fm) HDassert(chunk_info); /* Just point at the memory dataspace & selection */ - /* (Casting away const OK -QAK) */ - chunk_info->mspace = (H5S_t *)fm->mem_space; + chunk_info->mspace = fm->mem_space; /* Indicate that the chunk's memory space is shared */ chunk_info->mspace_shared = TRUE; @@ -2453,8 +2461,7 @@ done: */ static herr_t H5D__chunk_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t H5_ATTR_UNUSED nelmts, - const H5S_t H5_ATTR_UNUSED *file_space, const H5S_t H5_ATTR_UNUSED *mem_space, - H5D_chunk_map_t *fm) + H5S_t H5_ATTR_UNUSED *file_space, H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t *fm) { H5SL_node_t * chunk_node; /* Current node in chunk skip list */ H5D_io_info_t nonexistent_io_info; /* "nonexistent" I/O info object */ @@ -2604,8 +2611,7 @@ done: */ static herr_t H5D__chunk_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t H5_ATTR_UNUSED nelmts, - const H5S_t H5_ATTR_UNUSED *file_space, const H5S_t H5_ATTR_UNUSED *mem_space, - H5D_chunk_map_t *fm) + H5S_t H5_ATTR_UNUSED *file_space, H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t *fm) { H5SL_node_t * chunk_node; /* Current node in chunk skip list */ H5D_io_info_t ctg_io_info; /* Contiguous I/O info object */ @@ -3702,11 +3708,11 @@ done: static void * H5D__chunk_lock(const H5D_io_info_t *io_info, H5D_chunk_ud_t *udata, hbool_t relax, hbool_t prev_unfilt_chunk) { - const H5D_t * dset = io_info->dset; /* Local pointer to the dataset info */ - const H5O_pline_t *pline = + const H5D_t *dset = io_info->dset; /* Local pointer to the dataset info */ + H5O_pline_t *pline = &(dset->shared->dcpl_cache .pline); /* I/O pipeline info - always equal to the pline passed to H5D__chunk_mem_alloc */ - const H5O_pline_t * old_pline = pline; /* Old pipeline, i.e. pipeline used to read the chunk */ + H5O_pline_t * old_pline = pline; /* Old pipeline, i.e. pipeline used to read the chunk */ const H5O_layout_t *layout = &(dset->shared->layout); /* Dataset layout */ const H5O_fill_t * fill = &(dset->shared->dcpl_cache.fill); /* Fill value info */ H5D_fill_buf_info_t fb_info; /* Dataset's fill buffer info */ @@ -4285,18 +4291,18 @@ H5D__chunk_allocate(const H5D_io_info_t *io_info, hbool_t full_overwrite, const coordinates) */ hsize_t max_unalloc[H5O_LAYOUT_NDIMS]; /* Last chunk in each dimension that is unallocated (in scaled coordinates) */ - hsize_t scaled[H5O_LAYOUT_NDIMS]; /* Offset of current chunk (in scaled coordinates) */ - size_t orig_chunk_size; /* Original size of chunk in bytes */ - size_t chunk_size; /* Actual size of chunk in bytes, possibly filtered */ - unsigned filter_mask = 0; /* Filter mask for chunks that have them */ - const H5O_layout_t *layout = &(dset->shared->layout); /* Dataset layout */ - const H5O_pline_t * pline = &(dset->shared->dcpl_cache.pline); /* I/O pipeline info */ - const H5O_pline_t def_pline = H5O_CRT_PIPELINE_DEF; /* Default pipeline */ - const H5O_fill_t * fill = &(dset->shared->dcpl_cache.fill); /* Fill value info */ - H5D_fill_value_t fill_status; /* The fill value status */ - hbool_t should_fill = FALSE; /* Whether fill values should be written */ - void * unfilt_fill_buf = NULL; /* Unfiltered fill value buffer */ - void ** fill_buf = NULL; /* Pointer to the fill buffer to use for a chunk */ + hsize_t scaled[H5O_LAYOUT_NDIMS]; /* Offset of current chunk (in scaled coordinates) */ + size_t orig_chunk_size; /* Original size of chunk in bytes */ + size_t chunk_size; /* Actual size of chunk in bytes, possibly filtered */ + unsigned filter_mask = 0; /* Filter mask for chunks that have them */ + H5O_layout_t * layout = &(dset->shared->layout); /* Dataset layout */ + H5O_pline_t * pline = &(dset->shared->dcpl_cache.pline); /* I/O pipeline info */ + H5O_pline_t def_pline = H5O_CRT_PIPELINE_DEF; /* Default pipeline */ + const H5O_fill_t *fill = &(dset->shared->dcpl_cache.fill); /* Fill value info */ + H5D_fill_value_t fill_status; /* The fill value status */ + hbool_t should_fill = FALSE; /* Whether fill values should be written */ + void * unfilt_fill_buf = NULL; /* Unfiltered fill value buffer */ + void ** fill_buf = NULL; /* Pointer to the fill buffer to use for a chunk */ #ifdef H5_HAVE_PARALLEL hbool_t blocks_written = FALSE; /* Flag to indicate that chunk was actually written */ hbool_t using_mpi = @@ -4401,10 +4407,9 @@ H5D__chunk_allocate(const H5D_io_info_t *io_info, hbool_t full_overwrite, const if (should_fill) { /* Initialize the fill value buffer */ /* (delay allocating fill buffer for VL datatypes until refilling) */ - /* (casting away const OK - QAK) */ - if (H5D__fill_init(&fb_info, NULL, (H5MM_allocate_t)H5D__chunk_mem_alloc, (void *)pline, - (H5MM_free_t)H5D__chunk_mem_free, (void *)pline, &dset->shared->dcpl_cache.fill, - dset->shared->type, dset->shared->type_id, (size_t)0, orig_chunk_size) < 0) + if (H5D__fill_init(&fb_info, NULL, H5D__chunk_mem_alloc, pline, H5D__chunk_mem_free, pline, + &dset->shared->dcpl_cache.fill, dset->shared->type, dset->shared->type_id, + (size_t)0, orig_chunk_size) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't initialize fill buffer info") fb_info_init = TRUE; @@ -5175,14 +5180,11 @@ done: static int H5D__chunk_cmp_coll_fill_info(const void *_entry1, const void *_entry2) { - const struct chunk_coll_fill_info *entry1; - const struct chunk_coll_fill_info *entry2; + const struct chunk_coll_fill_info *entry1 = (const struct chunk_coll_fill_info *)_entry1; + const struct chunk_coll_fill_info *entry2 = (const struct chunk_coll_fill_info *)_entry2; FUNC_ENTER_STATIC_NOERR - entry1 = (const struct chunk_coll_fill_info *)_entry1; - entry2 = (const struct chunk_coll_fill_info *)_entry2; - FUNC_LEAVE_NOAPI(H5F_addr_cmp(entry1->addr, entry2->addr)) } /* end H5D__chunk_cmp_coll_fill_info() */ #endif /* H5_HAVE_PARALLEL */ @@ -6945,7 +6947,7 @@ done: */ herr_t H5D__chunk_file_alloc(const H5D_chk_idx_info_t *idx_info, const H5F_block_t *old_chunk, - H5F_block_t *new_chunk, hbool_t *need_insert, hsize_t scaled[]) + H5F_block_t *new_chunk, hbool_t *need_insert, const hsize_t scaled[]) { hbool_t alloc_chunk = FALSE; /* Whether to allocate chunk */ herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5Dcompact.c b/src/H5Dcompact.c index 8d823ad..857c8a3 100644 --- a/src/H5Dcompact.c +++ b/src/H5Dcompact.c @@ -55,8 +55,7 @@ static herr_t H5D__compact_construct(H5F_t *f, H5D_t *dset); static hbool_t H5D__compact_is_space_alloc(const H5O_storage_t *storage); static herr_t H5D__compact_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space, - H5D_chunk_map_t *cm); + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *cm); static ssize_t H5D__compact_readvv(const H5D_io_info_t *io_info, size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_size_arr[], hsize_t dset_offset_arr[], size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_size_arr[], hsize_t mem_offset_arr[]); @@ -71,13 +70,24 @@ static herr_t H5D__compact_dest(H5D_t *dset); /*********************/ /* Compact storage layout I/O ops */ -const H5D_layout_ops_t H5D_LOPS_COMPACT[1] = { - {H5D__compact_construct, NULL, H5D__compact_is_space_alloc, NULL, H5D__compact_io_init, H5D__contig_read, - H5D__contig_write, +const H5D_layout_ops_t H5D_LOPS_COMPACT[1] = {{ + H5D__compact_construct, /* construct */ + NULL, /* init */ + H5D__compact_is_space_alloc, /* is_space_alloc */ + NULL, /* is_data_cached */ + H5D__compact_io_init, /* io_init */ + H5D__contig_read, /* ser_read */ + H5D__contig_write, /* ser_write */ #ifdef H5_HAVE_PARALLEL - NULL, NULL, -#endif /* H5_HAVE_PARALLEL */ - H5D__compact_readvv, H5D__compact_writevv, H5D__compact_flush, NULL, H5D__compact_dest}}; + NULL, /* par_read */ + NULL, /* par_write */ +#endif + H5D__compact_readvv, /* readvv */ + H5D__compact_writevv, /* writevv */ + H5D__compact_flush, /* flush */ + NULL, /* io_term */ + H5D__compact_dest /* dest */ +}}; /*******************/ /* Local Variables */ @@ -228,8 +238,8 @@ H5D__compact_is_space_alloc(const H5O_storage_t H5_ATTR_UNUSED *storage) */ static herr_t H5D__compact_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t H5_ATTR_UNUSED *type_info, - hsize_t H5_ATTR_UNUSED nelmts, const H5S_t H5_ATTR_UNUSED *file_space, - const H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *cm) + hsize_t H5_ATTR_UNUSED nelmts, H5S_t H5_ATTR_UNUSED *file_space, + H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *cm) { FUNC_ENTER_STATIC_NOERR diff --git a/src/H5Dcontig.c b/src/H5Dcontig.c index 9709eea..b90b6a1 100644 --- a/src/H5Dcontig.c +++ b/src/H5Dcontig.c @@ -91,8 +91,7 @@ typedef struct H5D_contig_writevv_ud_t { static herr_t H5D__contig_construct(H5F_t *f, H5D_t *dset); static herr_t H5D__contig_init(H5F_t *f, const H5D_t *dset, hid_t dapl_id); static herr_t H5D__contig_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space, - H5D_chunk_map_t *cm); + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *cm); static ssize_t H5D__contig_readvv(const H5D_io_info_t *io_info, size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[], size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[]); @@ -109,13 +108,24 @@ static herr_t H5D__contig_write_one(H5D_io_info_t *io_info, hsize_t offset, size /*********************/ /* Contiguous storage layout I/O ops */ -const H5D_layout_ops_t H5D_LOPS_CONTIG[1] = { - {H5D__contig_construct, H5D__contig_init, H5D__contig_is_space_alloc, H5D__contig_is_data_cached, - H5D__contig_io_init, H5D__contig_read, H5D__contig_write, +const H5D_layout_ops_t H5D_LOPS_CONTIG[1] = {{ + H5D__contig_construct, /* construct */ + H5D__contig_init, /* init */ + H5D__contig_is_space_alloc, /* is_space_alloc */ + H5D__contig_is_data_cached, /* is_data_cached */ + H5D__contig_io_init, /* io_init */ + H5D__contig_read, /* ser_read */ + H5D__contig_write, /* ser_write */ #ifdef H5_HAVE_PARALLEL - H5D__contig_collective_read, H5D__contig_collective_write, -#endif /* H5_HAVE_PARALLEL */ - H5D__contig_readvv, H5D__contig_writevv, H5D__contig_flush, NULL, NULL}}; + H5D__contig_collective_read, /* par_read */ + H5D__contig_collective_write, /* par_write */ +#endif + H5D__contig_readvv, /* readvv */ + H5D__contig_writevv, /* writevv */ + H5D__contig_flush, /* flush */ + NULL, /* io_term */ + NULL /* dest */ +}}; /*******************/ /* Local Variables */ @@ -557,8 +567,8 @@ H5D__contig_is_data_cached(const H5D_shared_t *shared_dset) */ static herr_t H5D__contig_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t H5_ATTR_UNUSED *type_info, - hsize_t H5_ATTR_UNUSED nelmts, const H5S_t H5_ATTR_UNUSED *file_space, - const H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *cm) + hsize_t H5_ATTR_UNUSED nelmts, H5S_t H5_ATTR_UNUSED *file_space, + H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *cm) { FUNC_ENTER_STATIC_NOERR @@ -581,8 +591,8 @@ H5D__contig_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t H5_ATTR_ *------------------------------------------------------------------------- */ herr_t -H5D__contig_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *fm) +H5D__contig_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, H5S_t *file_space, + H5S_t *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *fm) { herr_t ret_value = SUCCEED; /*return value */ @@ -616,8 +626,8 @@ done: *------------------------------------------------------------------------- */ herr_t -H5D__contig_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *fm) +H5D__contig_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, H5S_t *file_space, + H5S_t *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *fm) { herr_t ret_value = SUCCEED; /*return value */ diff --git a/src/H5Defl.c b/src/H5Defl.c index 85c9dba..a30955b 100644 --- a/src/H5Defl.c +++ b/src/H5Defl.c @@ -62,7 +62,7 @@ typedef struct H5D_efl_writevv_ud_t { /* Layout operation callbacks */ static herr_t H5D__efl_construct(H5F_t *f, H5D_t *dset); static herr_t H5D__efl_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t *cm); + H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *cm); static ssize_t H5D__efl_readvv(const H5D_io_info_t *io_info, size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[], size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[]); @@ -80,12 +80,24 @@ static herr_t H5D__efl_write(const H5O_efl_t *efl, const H5D_t *dset, haddr_t ad /*********************/ /* External File List (EFL) storage layout I/O ops */ -const H5D_layout_ops_t H5D_LOPS_EFL[1] = {{H5D__efl_construct, NULL, H5D__efl_is_space_alloc, NULL, - H5D__efl_io_init, H5D__contig_read, H5D__contig_write, +const H5D_layout_ops_t H5D_LOPS_EFL[1] = {{ + H5D__efl_construct, /* construct */ + NULL, /* init */ + H5D__efl_is_space_alloc, /* is_space_alloc */ + NULL, /* is_data_cached */ + H5D__efl_io_init, /* io_init */ + H5D__contig_read, /* ser_read */ + H5D__contig_write, /* ser_write */ #ifdef H5_HAVE_PARALLEL - NULL, NULL, -#endif /* H5_HAVE_PARALLEL */ - H5D__efl_readvv, H5D__efl_writevv, NULL, NULL, NULL}}; + NULL, /* par_read */ + NULL, /* par_write */ +#endif + H5D__efl_readvv, /* readvv */ + H5D__efl_writevv, /* writevv */ + NULL, /* flush */ + NULL, /* io_term */ + NULL /* dest */ +}}; /*******************/ /* Local Variables */ @@ -198,8 +210,8 @@ H5D__efl_is_space_alloc(const H5O_storage_t H5_ATTR_UNUSED *storage) */ static herr_t H5D__efl_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t H5_ATTR_UNUSED *type_info, - hsize_t H5_ATTR_UNUSED nelmts, const H5S_t H5_ATTR_UNUSED *file_space, - const H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *cm) + hsize_t H5_ATTR_UNUSED nelmts, H5S_t H5_ATTR_UNUSED *file_space, + H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *cm) { FUNC_ENTER_STATIC_NOERR diff --git a/src/H5Dfill.c b/src/H5Dfill.c index b7ecdc9..d6d88f0 100644 --- a/src/H5Dfill.c +++ b/src/H5Dfill.c @@ -164,7 +164,7 @@ done: on each element so that each of them has a copy of the VL data. --------------------------------------------------------------------------*/ herr_t -H5D__fill(const void *fill, const H5T_t *fill_type, void *buf, const H5T_t *buf_type, const H5S_t *space) +H5D__fill(const void *fill, const H5T_t *fill_type, void *buf, const H5T_t *buf_type, H5S_t *space) { H5S_sel_iter_t *mem_iter = NULL; /* Memory selection iteration info */ hbool_t mem_iter_init = FALSE; /* Whether the memory selection iterator has been initialized */ diff --git a/src/H5Dint.c b/src/H5Dint.c index 3fc62d2..91d814b 100644 --- a/src/H5Dint.c +++ b/src/H5Dint.c @@ -45,7 +45,7 @@ /* General stuff */ static H5D_shared_t *H5D__new(hid_t dcpl_id, hid_t dapl_id, hbool_t creating, hbool_t vl_type); -static herr_t H5D__init_type(H5F_t *file, const H5D_t *dset, hid_t type_id, const H5T_t *type); +static herr_t H5D__init_type(H5F_t *file, const H5D_t *dset, hid_t type_id, H5T_t *type); static herr_t H5D__cache_dataspace_info(const H5D_t *dset); static herr_t H5D__init_space(H5F_t *file, const H5D_t *dset, const H5S_t *space); static herr_t H5D__update_oh_info(H5F_t *file, H5D_t *dset, hid_t dapl_id); @@ -470,7 +470,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5D__init_type(H5F_t *file, const H5D_t *dset, hid_t type_id, const H5T_t *type) +H5D__init_type(H5F_t *file, const H5D_t *dset, hid_t type_id, H5T_t *type) { htri_t relocatable; /* Flag whether the type is relocatable */ htri_t immutable; /* Flag whether the type is immutable */ @@ -526,8 +526,8 @@ H5D__init_type(H5F_t *file, const H5D_t *dset, hid_t type_id, const H5T_t *type) /* Use existing datatype */ dset->shared->type_id = type_id; - dset->shared->type = (H5T_t *)type; /* (Cast away const OK - QAK) */ - } /* end else */ + dset->shared->type = type; + } /* end else */ done: FUNC_LEAVE_NOAPI(ret_value) @@ -1120,7 +1120,7 @@ done: H5D_t * H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space, hid_t dcpl_id, hid_t dapl_id) { - const H5T_t * type; /* Datatype for dataset */ + H5T_t * type; /* Datatype for dataset */ H5D_t * new_dset = NULL; H5P_genplist_t *dc_plist = NULL; /* New Property list */ hbool_t has_vl_type = FALSE; /* Flag to indicate a VL-type for dataset */ @@ -1141,7 +1141,7 @@ H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space, hid_t dcpl_id, hid_t HDassert(H5I_GENPROP_LST == H5I_get_type(dcpl_id)); /* Get the dataset's datatype */ - if (NULL == (type = (const H5T_t *)H5I_object(type_id))) + if (NULL == (type = (H5T_t *)H5I_object(type_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a datatype") /* Check if the datatype is "sensible" for use in a dataset */ @@ -2199,7 +2199,7 @@ H5D_oloc(H5D_t *dataset) *------------------------------------------------------------------------- */ H5G_name_t * -H5D_nameof(const H5D_t *dataset) +H5D_nameof(H5D_t *dataset) { /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOERR diff --git a/src/H5Dio.c b/src/H5Dio.c index f6dd92f..479d28e 100644 --- a/src/H5Dio.c +++ b/src/H5Dio.c @@ -152,10 +152,10 @@ herr_t H5Dread(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, void *buf /*out*/) { - H5D_t * dset = NULL; - const H5S_t *mem_space = NULL; - const H5S_t *file_space = NULL; - herr_t ret_value = SUCCEED; /* Return value */ + H5D_t *dset = NULL; + H5S_t *mem_space = NULL; + H5S_t *file_space = NULL; + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE6("e", "iiiiix", dset_id, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf); @@ -283,10 +283,10 @@ herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, const void *buf) { - H5D_t * dset = NULL; - const H5S_t *mem_space = NULL; - const H5S_t *file_space = NULL; - herr_t ret_value = SUCCEED; /* Return value */ + H5D_t *dset = NULL; + H5S_t *mem_space = NULL; + H5S_t *file_space = NULL; + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE6("e", "iiiii*x", dset_id, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf); @@ -400,8 +400,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, const H5S_t *file_space, - void *buf /*out*/) +H5D__read(H5D_t *dataset, hid_t mem_type_id, H5S_t *mem_space, H5S_t *file_space, void *buf /*out*/) { H5D_chunk_map_t *fm = NULL; /* Chunk file<->memory mapping */ H5D_io_info_t io_info; /* Dataset I/O info */ @@ -496,20 +495,20 @@ H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, const H5S_t */ if (TRUE == H5S_SELECT_SHAPE_SAME(mem_space, file_space) && H5S_GET_EXTENT_NDIMS(mem_space) != H5S_GET_EXTENT_NDIMS(file_space)) { - void *adj_buf = NULL; /* Pointer to the location in buf corresponding */ - /* to the beginning of the projected mem space. */ + ptrdiff_t buf_adj = 0; /* Attempt to construct projected dataspace for memory dataspace */ if (H5S_select_construct_projection(mem_space, &projected_mem_space, - (unsigned)H5S_GET_EXTENT_NDIMS(file_space), buf, - (const void **)&adj_buf, type_info.dst_type_size) < 0) + (unsigned)H5S_GET_EXTENT_NDIMS(file_space), + type_info.dst_type_size, &buf_adj) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to construct projected memory dataspace") HDassert(projected_mem_space); - HDassert(adj_buf); + + /* Adjust the buffer by the given amount */ + buf = (void *)(((uint8_t *)buf) + buf_adj); /* Switch to using projected memory dataspace & adjusted buffer */ mem_space = projected_mem_space; - buf = adj_buf; } /* end if */ /* Retrieve dataset properties */ @@ -616,8 +615,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, const H5S_t *file_space, - const void *buf) +H5D__write(H5D_t *dataset, hid_t mem_type_id, H5S_t *mem_space, H5S_t *file_space, const void *buf) { H5D_chunk_map_t *fm = NULL; /* Chunk file<->memory mapping */ H5D_io_info_t io_info; /* Dataset I/O info */ @@ -735,20 +733,20 @@ H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, const H5S_ */ if (TRUE == H5S_SELECT_SHAPE_SAME(mem_space, file_space) && H5S_GET_EXTENT_NDIMS(mem_space) != H5S_GET_EXTENT_NDIMS(file_space)) { - void *adj_buf = NULL; /* Pointer to the location in buf corresponding */ - /* to the beginning of the projected mem space. */ + ptrdiff_t buf_adj = 0; /* Attempt to construct projected dataspace for memory dataspace */ if (H5S_select_construct_projection(mem_space, &projected_mem_space, - (unsigned)H5S_GET_EXTENT_NDIMS(file_space), buf, - (const void **)&adj_buf, type_info.src_type_size) < 0) + (unsigned)H5S_GET_EXTENT_NDIMS(file_space), + type_info.src_type_size, &buf_adj) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to construct projected memory dataspace") HDassert(projected_mem_space); - HDassert(adj_buf); + + /* Adjust the buffer by the given amount */ + buf = (const void *)(((const uint8_t *)buf) + buf_adj); /* Switch to using projected memory dataspace & adjusted buffer */ mem_space = projected_mem_space; - buf = adj_buf; } /* end if */ /* Retrieve dataset properties */ diff --git a/src/H5Dmpio.c b/src/H5Dmpio.c index 80f878b..a51feb8 100644 --- a/src/H5Dmpio.c +++ b/src/H5Dmpio.c @@ -302,7 +302,7 @@ static herr_t H5D__link_chunk_collective_io(H5D_io_info_t *io_info, const H5D_ty static herr_t H5D__link_chunk_filtered_collective_io(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, H5D_chunk_map_t *fm, int mpi_rank, int mpi_size); static herr_t H5D__inter_collective_io(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - const H5S_t *file_space, const H5S_t *mem_space); + H5S_t *file_space, H5S_t *mem_space); static herr_t H5D__final_collective_io(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, MPI_Datatype mpi_file_type, MPI_Datatype mpi_buf_type); static herr_t H5D__sort_chunk(H5D_io_info_t *io_info, const H5D_chunk_map_t *fm, @@ -892,8 +892,8 @@ done: */ herr_t H5D__mpio_select_read(const H5D_io_info_t *io_info, const H5D_type_info_t H5_ATTR_UNUSED *type_info, - hsize_t mpi_buf_count, const H5S_t H5_ATTR_UNUSED *file_space, - const H5S_t H5_ATTR_UNUSED *mem_space) + hsize_t mpi_buf_count, H5S_t H5_ATTR_UNUSED *file_space, + H5S_t H5_ATTR_UNUSED *mem_space) { const H5D_contig_storage_t *store_contig = &(io_info->store->contig); /* Contiguous storage info for this I/O operation */ @@ -923,8 +923,8 @@ done: */ herr_t H5D__mpio_select_write(const H5D_io_info_t *io_info, const H5D_type_info_t H5_ATTR_UNUSED *type_info, - hsize_t mpi_buf_count, const H5S_t H5_ATTR_UNUSED *file_space, - const H5S_t H5_ATTR_UNUSED *mem_space) + hsize_t mpi_buf_count, H5S_t H5_ATTR_UNUSED *file_space, + H5S_t H5_ATTR_UNUSED *mem_space) { const H5D_contig_storage_t *store_contig = &(io_info->store->contig); /* Contiguous storage info for this I/O operation */ @@ -994,7 +994,7 @@ done: */ herr_t H5D__contig_collective_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t H5_ATTR_UNUSED nelmts, const H5S_t *file_space, const H5S_t *mem_space, + hsize_t H5_ATTR_UNUSED nelmts, H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *fm) { H5D_mpio_actual_io_mode_t actual_io_mode = H5D_MPIO_CONTIGUOUS_COLLECTIVE; @@ -1033,7 +1033,7 @@ done: */ herr_t H5D__contig_collective_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t H5_ATTR_UNUSED nelmts, const H5S_t *file_space, const H5S_t *mem_space, + hsize_t H5_ATTR_UNUSED nelmts, H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *fm) { H5D_mpio_actual_io_mode_t actual_io_mode = H5D_MPIO_CONTIGUOUS_COLLECTIVE; @@ -1262,8 +1262,8 @@ done: */ herr_t H5D__chunk_collective_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t H5_ATTR_UNUSED nelmts, const H5S_t H5_ATTR_UNUSED *file_space, - const H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t *fm) + hsize_t H5_ATTR_UNUSED nelmts, H5S_t H5_ATTR_UNUSED *file_space, + H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t *fm) { herr_t ret_value = SUCCEED; /* Return value */ @@ -1292,8 +1292,8 @@ done: */ herr_t H5D__chunk_collective_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t H5_ATTR_UNUSED nelmts, const H5S_t H5_ATTR_UNUSED *file_space, - const H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t *fm) + hsize_t H5_ATTR_UNUSED nelmts, H5S_t H5_ATTR_UNUSED *file_space, + H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t *fm) { herr_t ret_value = SUCCEED; /* Return value */ @@ -2372,8 +2372,8 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5D__inter_collective_io(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, const H5S_t *file_space, - const H5S_t *mem_space) +H5D__inter_collective_io(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, H5S_t *file_space, + H5S_t *mem_space) { int mpi_buf_count; /* # of MPI types */ hbool_t mbt_is_derived = FALSE; @@ -3467,8 +3467,9 @@ done: static herr_t H5D__mpio_redistribute_shared_chunks_int(H5D_filtered_collective_io_info_t *chunk_list, size_t *num_chunks_assigned_map, hbool_t all_ranks_involved, - const H5D_io_info_t *io_info, const H5D_chunk_map_t *fm, - int mpi_rank, int mpi_size) + const H5D_io_info_t * io_info, + const H5D_chunk_map_t H5_ATTR_NDEBUG_UNUSED *fm, int mpi_rank, + int mpi_size) { MPI_Datatype struct_type; MPI_Datatype packed_type; @@ -3797,7 +3798,8 @@ done: static herr_t H5D__mpio_share_chunk_modification_data(H5D_filtered_collective_io_info_t *chunk_list, size_t *chunk_list_num_entries, H5D_io_info_t *io_info, - const H5D_type_info_t *type_info, int mpi_rank, int mpi_size, + const H5D_type_info_t *type_info, int mpi_rank, + int H5_ATTR_NDEBUG_UNUSED mpi_size, H5D_filtered_collective_io_info_t **chunk_hash_table, unsigned char ***chunk_msg_bufs, int *chunk_msg_bufs_len) { @@ -4547,7 +4549,7 @@ H5D__mpio_collective_filtered_chunk_update(H5D_filtered_collective_io_info_t *ch H5D_filtered_collective_io_info_t *chunk_hash_table, unsigned char **chunk_msg_bufs, int chunk_msg_bufs_len, const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - int mpi_rank, int mpi_size) + int H5_ATTR_NDEBUG_UNUSED mpi_rank, int mpi_size) { H5D_fill_buf_info_t fb_info; H5D_chunk_info_t * chunk_info = NULL; diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h index caed1f5..eb09f32 100644 --- a/src/H5Dpkg.h +++ b/src/H5Dpkg.h @@ -121,13 +121,12 @@ typedef hbool_t (*H5D_layout_is_space_alloc_func_t)(const H5O_storage_t *storage typedef hbool_t (*H5D_layout_is_data_cached_func_t)(const H5D_shared_t *shared_dset); typedef herr_t (*H5D_layout_io_init_func_t)(const struct H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, - struct H5D_chunk_map_t *cm); + H5S_t *file_space, H5S_t *mem_space, struct H5D_chunk_map_t *cm); typedef herr_t (*H5D_layout_read_func_t)(struct H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space, + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space, struct H5D_chunk_map_t *fm); typedef herr_t (*H5D_layout_write_func_t)(struct H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space, + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space, struct H5D_chunk_map_t *fm); typedef ssize_t (*H5D_layout_readvv_func_t)(const struct H5D_io_info_t *io_info, size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], @@ -168,10 +167,10 @@ typedef struct H5D_layout_ops_t { /* Function pointers for either multiple or single block I/O access */ typedef herr_t (*H5D_io_single_read_func_t)(const struct H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space); + H5S_t *file_space, H5S_t *mem_space); typedef herr_t (*H5D_io_single_write_func_t)(const struct H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space); + H5S_t *file_space, H5S_t *mem_space); /* Typedef for raw data I/O framework info */ typedef struct H5D_io_ops_t { @@ -342,10 +341,10 @@ typedef struct H5D_chunk_map_t { H5O_layout_t *layout; /* Dataset layout information*/ hsize_t nelmts; /* Number of elements selected in file & memory dataspaces */ - const H5S_t *file_space; /* Pointer to the file dataspace */ - unsigned f_ndims; /* Number of dimensions for file dataspace */ + H5S_t * file_space; /* Pointer to the file dataspace */ + unsigned f_ndims; /* Number of dimensions for file dataspace */ - const H5S_t * mem_space; /* Pointer to the memory dataspace */ + H5S_t * mem_space; /* Pointer to the memory dataspace */ H5S_t * mchunk_tmpl; /* Dataspace template for new memory chunks */ H5S_sel_iter_t mem_iter; /* Iterator for elements in memory selection */ unsigned m_ndims; /* Number of dimensions for memory dataspace */ @@ -588,29 +587,29 @@ H5_DLL herr_t H5D__refresh(hid_t dset_id, H5D_t *dataset); H5_DLL herr_t H5D__format_convert(H5D_t *dataset); /* Internal I/O routines */ -H5_DLL herr_t H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, const H5S_t *file_space, +H5_DLL herr_t H5D__read(H5D_t *dataset, hid_t mem_type_id, H5S_t *mem_space, H5S_t *file_space, void *buf /*out*/); -H5_DLL herr_t H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, const H5S_t *file_space, +H5_DLL herr_t H5D__write(H5D_t *dataset, hid_t mem_type_id, H5S_t *mem_space, H5S_t *file_space, const void *buf); /* Functions that perform direct serial I/O operations */ H5_DLL herr_t H5D__select_read(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space); + H5S_t *file_space, H5S_t *mem_space); H5_DLL herr_t H5D__select_write(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space); + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space); /* Functions that perform direct copying between memory buffers */ -H5_DLL herr_t H5D_select_io_mem(void *dst_buf, const H5S_t *dst_space, const void *src_buf, - const H5S_t *src_space, size_t elmt_size, size_t nelmts); +H5_DLL herr_t H5D_select_io_mem(void *dst_buf, H5S_t *dst_space, const void *src_buf, H5S_t *src_space, + size_t elmt_size, size_t nelmts); /* Functions that perform scatter-gather serial I/O operations */ H5_DLL herr_t H5D__scatter_mem(const void *_tscat_buf, H5S_sel_iter_t *iter, size_t nelmts, void *_buf); H5_DLL size_t H5D__gather_mem(const void *_buf, H5S_sel_iter_t *iter, size_t nelmts, void *_tgath_buf /*out*/); H5_DLL herr_t H5D__scatgath_read(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space); + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space); H5_DLL herr_t H5D__scatgath_write(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space); + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space); /* Functions that operate on dataset's layout information */ H5_DLL herr_t H5D__layout_set_io_ops(const H5D_t *dataset); @@ -628,9 +627,9 @@ H5_DLL hbool_t H5D__contig_is_space_alloc(const H5O_storage_t *storage); H5_DLL hbool_t H5D__contig_is_data_cached(const H5D_shared_t *shared_dset); H5_DLL herr_t H5D__contig_fill(const H5D_io_info_t *io_info); H5_DLL herr_t H5D__contig_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t *fm); + H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm); H5_DLL herr_t H5D__contig_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t *fm); + H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm); H5_DLL herr_t H5D__contig_copy(H5F_t *f_src, const H5O_storage_contig_t *storage_src, H5F_t *f_dst, H5O_storage_contig_t *storage_dst, H5T_t *src_dtype, H5O_copy_t *cpy_info); H5_DLL herr_t H5D__contig_delete(H5F_t *f, const H5O_storage_t *store); @@ -646,10 +645,10 @@ H5_DLL herr_t H5D__chunk_allocated(const H5D_t *dset, hsize_t *nbytes); H5_DLL herr_t H5D__chunk_allocate(const H5D_io_info_t *io_info, hbool_t full_overwrite, const hsize_t old_dim[]); H5_DLL herr_t H5D__chunk_file_alloc(const H5D_chk_idx_info_t *idx_info, const H5F_block_t *old_chunk, - H5F_block_t *new_chunk, hbool_t *need_insert, hsize_t scaled[]); -H5_DLL void * H5D__chunk_mem_alloc(size_t size, const H5O_pline_t *pline); -H5_DLL void H5D__chunk_mem_free(void *chk, const H5O_pline_t *_pline); -H5_DLL void * H5D__chunk_mem_xfree(void *chk, const H5O_pline_t *pline); + H5F_block_t *new_chunk, hbool_t *need_insert, const hsize_t scaled[]); +H5_DLL void * H5D__chunk_mem_alloc(size_t size, void *pline); +H5_DLL void H5D__chunk_mem_free(void *chk, void *pline); +H5_DLL void * H5D__chunk_mem_xfree(void *chk, const void *pline); H5_DLL void * H5D__chunk_mem_realloc(void *chk, size_t size, const H5O_pline_t *pline); H5_DLL herr_t H5D__chunk_update_old_edge_chunks(H5D_t *dset, hsize_t old_dim[]); H5_DLL hbool_t H5D__chunk_is_partial_edge_chunk(unsigned dset_ndims, const uint32_t *chunk_dims, @@ -702,7 +701,7 @@ H5_DLL herr_t H5D__efl_bh_info(H5F_t *f, H5O_efl_t *efl, hsize_t *heap_size); /* Functions that perform fill value operations on datasets */ H5_DLL herr_t H5D__fill(const void *fill, const H5T_t *fill_type, void *buf, const H5T_t *buf_type, - const H5S_t *space); + H5S_t *space); H5_DLL herr_t H5D__fill_init(H5D_fill_buf_info_t *fb_info, void *caller_fill_buf, H5MM_allocate_t alloc_func, void *alloc_info, H5MM_free_t free_func, void *free_info, const H5O_fill_t *fill, const H5T_t *dset_type, hid_t dset_type_id, size_t nelmts, size_t min_buf_size); @@ -718,26 +717,26 @@ H5_DLL herr_t H5D__fill_term(H5D_fill_buf_info_t *fb_info); #endif /*H5D_DEBUG*/ /* MPI-IO function to read, it will select either regular or irregular read */ H5_DLL herr_t H5D__mpio_select_read(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space); + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space); /* MPI-IO function to write, it will select either regular or irregular read */ H5_DLL herr_t H5D__mpio_select_write(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space); + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space); /* MPI-IO functions to handle contiguous collective IO */ H5_DLL herr_t H5D__contig_collective_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space, + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm); H5_DLL herr_t H5D__contig_collective_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space, + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm); /* MPI-IO functions to handle chunked collective IO */ H5_DLL herr_t H5D__chunk_collective_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space, + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm); H5_DLL herr_t H5D__chunk_collective_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space, + hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm); /* MPI-IO function to check if a direct I/O transfer is possible between diff --git a/src/H5Dprivate.h b/src/H5Dprivate.h index 4ca35b4..c61604d 100644 --- a/src/H5Dprivate.h +++ b/src/H5Dprivate.h @@ -163,7 +163,7 @@ H5_DLL herr_t H5D_close(H5D_t *dataset); H5_DLL herr_t H5D_mult_refresh_close(hid_t dset_id); H5_DLL herr_t H5D_mult_refresh_reopen(H5D_t *dataset); H5_DLL H5O_loc_t *H5D_oloc(H5D_t *dataset); -H5_DLL H5G_name_t *H5D_nameof(const H5D_t *dataset); +H5_DLL H5G_name_t *H5D_nameof(H5D_t *dataset); H5_DLL H5T_t *H5D_typeof(const H5D_t *dset); H5_DLL herr_t H5D_flush_all(const H5F_t *f); H5_DLL hid_t H5D_get_create_plist(const H5D_t *dset); diff --git a/src/H5Dscatgath.c b/src/H5Dscatgath.c index 1888adb..1ac5ada 100644 --- a/src/H5Dscatgath.c +++ b/src/H5Dscatgath.c @@ -437,7 +437,7 @@ done: */ herr_t H5D__scatgath_read(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space) + H5S_t *file_space, H5S_t *mem_space) { void * buf = io_info->u.rbuf; /* Local pointer to application buffer */ H5S_sel_iter_t *mem_iter = NULL; /* Memory selection iteration info*/ @@ -577,7 +577,7 @@ done: */ herr_t H5D__scatgath_write(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space) + H5S_t *file_space, H5S_t *mem_space) { const void * buf = io_info->u.wbuf; /* Local pointer to application buffer */ H5S_sel_iter_t *mem_iter = NULL; /* Memory selection iteration info*/ diff --git a/src/H5Dselect.c b/src/H5Dselect.c index 4ca16ae..a5e73c2 100644 --- a/src/H5Dselect.c +++ b/src/H5Dselect.c @@ -44,8 +44,8 @@ /* Local Prototypes */ /********************/ -static herr_t H5D__select_io(const H5D_io_info_t *io_info, size_t elmt_size, size_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space); +static herr_t H5D__select_io(const H5D_io_info_t *io_info, size_t elmt_size, size_t nelmts, H5S_t *file_space, + H5S_t *mem_space); /*********************/ /* Package Variables */ @@ -77,8 +77,8 @@ H5FL_EXTERN(H5S_sel_iter_t); *------------------------------------------------------------------------- */ static herr_t -H5D__select_io(const H5D_io_info_t *io_info, size_t elmt_size, size_t nelmts, const H5S_t *file_space, - const H5S_t *mem_space) +H5D__select_io(const H5D_io_info_t *io_info, size_t elmt_size, size_t nelmts, H5S_t *file_space, + H5S_t *mem_space) { H5S_sel_iter_t *mem_iter = NULL; /* Memory selection iteration info */ hbool_t mem_iter_init = FALSE; /* Memory selection iteration info has been initialized */ @@ -274,8 +274,8 @@ done: *------------------------------------------------------------------------- */ herr_t -H5D_select_io_mem(void *dst_buf, const H5S_t *dst_space, const void *src_buf, const H5S_t *src_space, - size_t elmt_size, size_t nelmts) +H5D_select_io_mem(void *dst_buf, H5S_t *dst_space, const void *src_buf, H5S_t *src_space, size_t elmt_size, + size_t nelmts) { H5S_sel_iter_t *dst_sel_iter = NULL; /* Destination dataspace iteration info */ H5S_sel_iter_t *src_sel_iter = NULL; /* Source dataspace iteration info */ @@ -453,7 +453,7 @@ done: */ herr_t H5D__select_read(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space) + H5S_t *file_space, H5S_t *mem_space) { herr_t ret_value = SUCCEED; /* Return value */ @@ -482,7 +482,7 @@ done: */ herr_t H5D__select_write(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space) + H5S_t *file_space, H5S_t *mem_space) { herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5Dvirtual.c b/src/H5Dvirtual.c index c8fa066..3e838c3 100644 --- a/src/H5Dvirtual.c +++ b/src/H5Dvirtual.c @@ -83,9 +83,9 @@ /* Layout operation callbacks */ static hbool_t H5D__virtual_is_data_cached(const H5D_shared_t *shared_dset); static herr_t H5D__virtual_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t *fm); + H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm); static herr_t H5D__virtual_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t *fm); + H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm); static herr_t H5D__virtual_flush(H5D_t *dset); /* Other functions */ @@ -102,26 +102,37 @@ static herr_t H5D__virtual_build_source_name(char * size_t static_strlen, size_t nsubs, hsize_t blockno, char **built_name); static herr_t H5D__virtual_init_all(const H5D_t *dset); -static herr_t H5D__virtual_pre_io(H5D_io_info_t *io_info, H5O_storage_virtual_t *storage, - const H5S_t *file_space, const H5S_t *mem_space, hsize_t *tot_nelmts); +static herr_t H5D__virtual_pre_io(H5D_io_info_t *io_info, H5O_storage_virtual_t *storage, H5S_t *file_space, + H5S_t *mem_space, hsize_t *tot_nelmts); static herr_t H5D__virtual_post_io(H5O_storage_virtual_t *storage); static herr_t H5D__virtual_read_one(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - const H5S_t *file_space, H5O_storage_virtual_srcdset_t *source_dset); + H5S_t *file_space, H5O_storage_virtual_srcdset_t *source_dset); static herr_t H5D__virtual_write_one(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, - const H5S_t *file_space, H5O_storage_virtual_srcdset_t *source_dset); + H5S_t *file_space, H5O_storage_virtual_srcdset_t *source_dset); /*********************/ /* Package Variables */ /*********************/ /* Contiguous storage layout I/O ops */ -const H5D_layout_ops_t H5D_LOPS_VIRTUAL[1] = {{NULL, H5D__virtual_init, H5D__virtual_is_space_alloc, - H5D__virtual_is_data_cached, NULL, H5D__virtual_read, - H5D__virtual_write, +const H5D_layout_ops_t H5D_LOPS_VIRTUAL[1] = {{ + NULL, /* construct */ + H5D__virtual_init, /* init */ + H5D__virtual_is_space_alloc, /* is_space_alloc */ + H5D__virtual_is_data_cached, /* is_data_cached */ + NULL, /* io_init */ + H5D__virtual_read, /* ser_read */ + H5D__virtual_write, /* ser_write */ #ifdef H5_HAVE_PARALLEL - NULL, NULL, -#endif /* H5_HAVE_PARALLEL */ - NULL, NULL, H5D__virtual_flush, NULL, NULL}}; + NULL, /* par_read */ + NULL, /* par_write */ +#endif + NULL, /* readvv */ + NULL, /* writevv */ + H5D__virtual_flush, /* flush */ + NULL, /* io_term */ + NULL /* dest */ +}}; /*******************/ /* Local Variables */ @@ -2376,8 +2387,8 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5D__virtual_pre_io(H5D_io_info_t *io_info, H5O_storage_virtual_t *storage, const H5S_t *file_space, - const H5S_t *mem_space, hsize_t *tot_nelmts) +H5D__virtual_pre_io(H5D_io_info_t *io_info, H5O_storage_virtual_t *storage, H5S_t *file_space, + H5S_t *mem_space, hsize_t *tot_nelmts) { hssize_t select_nelmts; /* Number of elements in selection */ hsize_t bounds_start[H5S_MAX_RANK]; /* Selection bounds start */ @@ -2687,7 +2698,7 @@ H5D__virtual_post_io(H5O_storage_virtual_t *storage) *------------------------------------------------------------------------- */ static herr_t -H5D__virtual_read_one(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, const H5S_t *file_space, +H5D__virtual_read_one(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, H5S_t *file_space, H5O_storage_virtual_srcdset_t *source_dset) { H5S_t *projected_src_space = NULL; /* File space for selection in a single source dataset */ @@ -2747,8 +2758,8 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5D__virtual_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *fm) +H5D__virtual_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, H5S_t *file_space, + H5S_t *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *fm) { H5O_storage_virtual_t *storage; /* Convenient pointer into layout struct */ hsize_t tot_nelmts; /* Total number of elements mapped to mem_space */ @@ -2877,7 +2888,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5D__virtual_write_one(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, const H5S_t *file_space, +H5D__virtual_write_one(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, H5S_t *file_space, H5O_storage_virtual_srcdset_t *source_dset) { H5S_t *projected_src_space = NULL; /* File space for selection in a single source dataset */ @@ -2940,7 +2951,7 @@ done: */ static herr_t H5D__virtual_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts, - const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *fm) + H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t H5_ATTR_UNUSED *fm) { H5O_storage_virtual_t *storage; /* Convenient pointer into layout struct */ hsize_t tot_nelmts; /* Total number of elements mapped to mem_space */ @@ -1746,8 +1746,10 @@ H5FDget_vfd_handle(H5FD_t *file, hid_t fapl_id, void **file_handle) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "can't get file handle for file driver") done: - if (FAIL == ret_value) - *file_handle = NULL; + if (FAIL == ret_value) { + if (file_handle) + *file_handle = NULL; + } FUNC_LEAVE_API(ret_value) } /* end H5FDget_vfd_handle() */ diff --git a/src/H5FDhdfs.c b/src/H5FDhdfs.c index c2f5dc4..705fa4d 100644 --- a/src/H5FDhdfs.c +++ b/src/H5FDhdfs.c @@ -1731,7 +1731,7 @@ H5FD_hdfs_init(void) } herr_t -H5Pget_fapl_hdfs(hid_t fapl_id, H5FD_hdfs_fapl_t *fa_out) +H5Pget_fapl_hdfs(hid_t H5_ATTR_UNUSED fapl_id, H5FD_hdfs_fapl_t H5_ATTR_UNUSED *fa_out) { herr_t ret_value = FAIL; @@ -1745,7 +1745,7 @@ done: } herr_t -H5Pset_fapl_hdfs(hid_t fapl_id, H5FD_hdfs_fapl_t *fa) +H5Pset_fapl_hdfs(hid_t H5_ATTR_UNUSED fapl_id, H5FD_hdfs_fapl_t H5_ATTR_UNUSED *fa) { herr_t ret_value = FAIL; diff --git a/src/H5FDros3.c b/src/H5FDros3.c index a9d57a7..3ac034d 100644 --- a/src/H5FDros3.c +++ b/src/H5FDros3.c @@ -22,8 +22,10 @@ * Relies on "s3comms" utility layer to implement the AWS REST API. */ +#ifdef H5_HAVE_ROS3_VFD /* This source code file is part of the H5FD driver module */ #include "H5FDdrvr_module.h" +#endif #include "H5private.h" /* Generic Functions */ #include "H5Eprivate.h" /* Error handling */ diff --git a/src/H5Gent.c b/src/H5Gent.c index b200c0e..2b68bf2 100644 --- a/src/H5Gent.c +++ b/src/H5Gent.c @@ -303,7 +303,7 @@ done: *------------------------------------------------------------------------- */ void -H5G__ent_copy(H5G_entry_t *dst, const H5G_entry_t *src, H5_copy_depth_t depth) +H5G__ent_copy(H5G_entry_t *dst, H5G_entry_t *src, H5_copy_depth_t depth) { FUNC_ENTER_PACKAGE_NOERR @@ -321,8 +321,7 @@ H5G__ent_copy(H5G_entry_t *dst, const H5G_entry_t *src, H5_copy_depth_t depth) ; } else if (depth == H5_COPY_SHALLOW) { - /* Discarding 'const' qualifier OK - QAK */ - H5G__ent_reset((H5G_entry_t *)src); + H5G__ent_reset(src); } /* end if */ FUNC_LEAVE_NOAPI_VOID diff --git a/src/H5Gloc.c b/src/H5Gloc.c index ac7f31e..d99cf2e 100644 --- a/src/H5Gloc.c +++ b/src/H5Gloc.c @@ -519,8 +519,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5G__loc_insert(H5G_loc_t *grp_loc, const char *name, H5G_loc_t *obj_loc, H5O_type_t obj_type, - const void *crt_info) +H5G__loc_insert(H5G_loc_t *grp_loc, char *name, H5G_loc_t *obj_loc, H5O_type_t obj_type, const void *crt_info) { H5O_link_t lnk; /* Link for object to insert */ herr_t ret_value = SUCCEED; /* Return value */ @@ -537,9 +536,8 @@ H5G__loc_insert(H5G_loc_t *grp_loc, const char *name, H5G_loc_t *obj_loc, H5O_ty lnk.cset = H5F_DEFAULT_CSET; lnk.corder = 0; /* Will be reset if the group is tracking creation order */ lnk.corder_valid = FALSE; /* Indicate that the creation order isn't valid (yet) */ - /* Casting away const OK -QAK */ - lnk.name = (char *)name; - lnk.u.hard.addr = obj_loc->oloc->addr; + lnk.name = name; + lnk.u.hard.addr = obj_loc->oloc->addr; /* Insert new group into current group's symbol table */ if (H5G_obj_insert(grp_loc->oloc, name, &lnk, TRUE, obj_type, crt_info) < 0) @@ -722,10 +720,10 @@ H5G__loc_set_comment_cb(H5G_loc_t H5_ATTR_UNUSED *grp_loc /*in*/, const char H5_ const H5O_link_t H5_ATTR_UNUSED *lnk, H5G_loc_t *obj_loc, void *_udata /*in,out*/, H5G_own_loc_t *own_loc /*out*/) { - H5G_loc_sc_t *udata = (H5G_loc_sc_t *)_udata; /* User data passed in */ - H5O_name_t comment; /* Object header "comment" message */ - htri_t exists; /* Whether a "comment" message already exists */ - herr_t ret_value = SUCCEED; /* Return value */ + H5G_loc_sc_t *udata = (H5G_loc_sc_t *)_udata; /* User data passed in */ + H5O_name_t comment = {0}; /* Object header "comment" message */ + htri_t exists; /* Whether a "comment" message already exists */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -745,13 +743,15 @@ H5G__loc_set_comment_cb(H5G_loc_t H5_ATTR_UNUSED *grp_loc /*in*/, const char H5_ /* Add the new message */ if (udata->comment && *udata->comment) { - /* Casting away const OK -QAK */ - comment.s = (char *)udata->comment; + if (NULL == (comment.s = HDstrdup(udata->comment))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't copy group comment") if (H5O_msg_create(obj_loc->oloc, H5O_NAME_ID, 0, H5O_UPDATE_TIME, &comment) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to set comment object header message") } /* end if */ done: + HDfree(comment.s); + /* Indicate that this callback didn't take ownership of the group * * location for the object */ *own_loc = H5G_OWN_NONE; diff --git a/src/H5Gname.c b/src/H5Gname.c index dab86b3..b5d0daf 100644 --- a/src/H5Gname.c +++ b/src/H5Gname.c @@ -308,7 +308,7 @@ H5G_build_fullpath(const char *prefix, const char *name) /* Build full path */ HDstrncpy(full_path, prefix, orig_path_len + 1); if (need_sep) - HDstrncat(full_path, "/", (size_t)1); + HDstrcat(full_path, "/"); HDstrncat(full_path, name, name_len); /* Create reference counted string for path */ diff --git a/src/H5Gpkg.h b/src/H5Gpkg.h index b704757..68afbac 100644 --- a/src/H5Gpkg.h +++ b/src/H5Gpkg.h @@ -377,7 +377,7 @@ H5_DLL H5G_obj_t H5G__stab_get_type_by_idx(H5O_loc_t *oloc, hsize_t idx); /* * Functions that understand symbol table entries. */ -H5_DLL void H5G__ent_copy(H5G_entry_t *dst, const H5G_entry_t *src, H5_copy_depth_t depth); +H5_DLL void H5G__ent_copy(H5G_entry_t *dst, H5G_entry_t *src, H5_copy_depth_t depth); H5_DLL void H5G__ent_reset(H5G_entry_t *ent); H5_DLL herr_t H5G__ent_decode_vec(const H5F_t *f, const uint8_t **pp, const uint8_t *p_end, H5G_entry_t *ent, unsigned n); @@ -468,7 +468,7 @@ H5_DLL herr_t H5G__name_init(H5G_name_t *name, const char *path); /* * These functions operate on group "locations" */ -H5_DLL herr_t H5G__loc_insert(H5G_loc_t *grp_loc, const char *name, H5G_loc_t *obj_loc, H5O_type_t obj_type, +H5_DLL herr_t H5G__loc_insert(H5G_loc_t *grp_loc, char *name, H5G_loc_t *obj_loc, H5O_type_t obj_type, const void *crt_info); /* Testing functions */ diff --git a/src/H5Idbg.c b/src/H5Idbg.c index ef8ea65..b7ad4ce 100644 --- a/src/H5Idbg.c +++ b/src/H5Idbg.c @@ -94,11 +94,11 @@ H5I__id_dump_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) break; } case H5I_DATASET: { - path = H5D_nameof((const H5D_t *)info->object); + path = H5D_nameof(info->object); break; } case H5I_DATATYPE: { - path = H5T_nameof((const H5T_t *)info->object); + path = H5T_nameof(info->object); break; } case H5I_UNINIT: diff --git a/src/H5Ofill.c b/src/H5Ofill.c index 5e907ff..8b22939 100644 --- a/src/H5Ofill.c +++ b/src/H5Ofill.c @@ -348,7 +348,7 @@ H5O_fill_old_decode(H5F_t *f, H5O_t *open_oh, unsigned H5_ATTR_UNUSED mesg_flags if ((exists = H5O_msg_exists_oh(open_oh, H5O_DTYPE_ID)) < 0) HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, NULL, "unable to read object header") if (exists) { - if ((dt = H5O_msg_read_oh(f, open_oh, H5O_DTYPE_ID, NULL)) < 0) + if (NULL == (dt = H5O_msg_read_oh(f, open_oh, H5O_DTYPE_ID, NULL))) HGOTO_ERROR(H5E_SYM, H5E_CANTGET, NULL, "can't read DTYPE message") /* Verify size */ if (fill->size != H5T_GET_SIZE(dt)) @@ -143,8 +143,16 @@ H5RS_wrap(const char *s) if (NULL == (ret_value = H5FL_MALLOC(H5RS_str_t))) HGOTO_ERROR(H5E_RS, H5E_NOSPACE, NULL, "memory allocation failed") - /* Set the internal fields */ - ret_value->s = (char *)s; + /* Set the internal fields + * + * We ignore warnings about storing a const char pointer in the struct + * since we never modify or free the string when the wrapped struct + * field is set to TRUE. + */ + H5_GCC_DIAG_OFF("cast-qual") + ret_value->s = (char *)s; + H5_GCC_DIAG_ON("cast-qual") + ret_value->wrapped = 1; ret_value->n = 1; @@ -218,7 +218,7 @@ H5S_term_package(void) REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_get_validated_dataspace(hid_t space_id, const H5S_t **space) +H5S_get_validated_dataspace(hid_t space_id, H5S_t **space) { herr_t ret_value = SUCCEED; /* Return value */ @@ -235,7 +235,7 @@ H5S_get_validated_dataspace(hid_t space_id, const H5S_t **space) *space = NULL; else { /* Get the dataspace pointer */ - if (NULL == (*space = (const H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) + if (NULL == (*space = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "space_id is not a dataspace ID") /* Check for valid selection */ diff --git a/src/H5Sall.c b/src/H5Sall.c index 35ddf3d..4dcc83a 100644 --- a/src/H5Sall.c +++ b/src/H5Sall.c @@ -49,22 +49,22 @@ static herr_t H5S__all_copy(H5S_t *dst, const H5S_t *src, hbool_t share_selection); static herr_t H5S__all_release(H5S_t *space); static htri_t H5S__all_is_valid(const H5S_t *space); -static hssize_t H5S__all_serial_size(const H5S_t *space); -static herr_t H5S__all_serialize(const H5S_t *space, uint8_t **p); +static hssize_t H5S__all_serial_size(H5S_t *space); +static herr_t H5S__all_serialize(H5S_t *space, uint8_t **p); static herr_t H5S__all_deserialize(H5S_t **space, const uint8_t **p); static herr_t H5S__all_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); static herr_t H5S__all_offset(const H5S_t *space, hsize_t *off); static int H5S__all_unlim_dim(const H5S_t *space); static htri_t H5S__all_is_contiguous(const H5S_t *space); static htri_t H5S__all_is_single(const H5S_t *space); -static htri_t H5S__all_is_regular(const H5S_t *space); -static htri_t H5S__all_shape_same(const H5S_t *space1, const H5S_t *space2); -static htri_t H5S__all_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end); +static htri_t H5S__all_is_regular(H5S_t *space); +static htri_t H5S__all_shape_same(H5S_t *space1, H5S_t *space2); +static htri_t H5S__all_intersect_block(H5S_t *space, const hsize_t *start, const hsize_t *end); static herr_t H5S__all_adjust_u(H5S_t *space, const hsize_t *offset); static herr_t H5S__all_adjust_s(H5S_t *space, const hssize_t *offset); static herr_t H5S__all_project_scalar(const H5S_t *space, hsize_t *offset); static herr_t H5S__all_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); -static herr_t H5S__all_iter_init(const H5S_t *space, H5S_sel_iter_t *iter); +static herr_t H5S__all_iter_init(H5S_t *space, H5S_sel_iter_t *iter); /* Selection iteration callbacks */ static herr_t H5S__all_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords); @@ -144,7 +144,7 @@ static const H5S_sel_iter_class_t H5S_sel_iter_all[1] = {{ *------------------------------------------------------------------------- */ static herr_t -H5S__all_iter_init(const H5S_t H5_ATTR_UNUSED *space, H5S_sel_iter_t *iter) +H5S__all_iter_init(H5S_t H5_ATTR_UNUSED *space, H5S_sel_iter_t *iter) { FUNC_ENTER_STATIC_NOERR @@ -557,7 +557,7 @@ H5S__all_is_valid(const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static hssize_t -H5S__all_serial_size(const H5S_t H5_ATTR_UNUSED *space) +H5S__all_serial_size(H5S_t H5_ATTR_UNUSED *space) { FUNC_ENTER_STATIC_NOERR @@ -577,7 +577,7 @@ H5S__all_serial_size(const H5S_t H5_ATTR_UNUSED *space) Serialize the current selection into a user-provided buffer. USAGE herr_t H5S__all_serialize(space, p) - const H5S_t *space; IN: Dataspace with selection to serialize + H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. @@ -592,7 +592,7 @@ H5S__all_serial_size(const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S__all_serialize(const H5S_t *space, uint8_t **p) +H5S__all_serialize(H5S_t *space, uint8_t **p) { uint8_t *pp = (*p); /* Local pointer for decoding */ @@ -864,7 +864,7 @@ H5S__all_is_single(const H5S_t H5_ATTR_UNUSED *space) Check if a "all" selection is "regular" USAGE htri_t H5S__all_is_regular(space) - const H5S_t *space; IN: Dataspace pointer to check + H5S_t *space; IN: Dataspace pointer to check RETURNS TRUE/FALSE/FAIL DESCRIPTION @@ -877,7 +877,7 @@ H5S__all_is_single(const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static htri_t -H5S__all_is_regular(const H5S_t H5_ATTR_UNUSED *space) +H5S__all_is_regular(H5S_t H5_ATTR_UNUSED *space) { FUNC_ENTER_STATIC_NOERR @@ -894,8 +894,8 @@ H5S__all_is_regular(const H5S_t H5_ATTR_UNUSED *space) Check if a two "all" selections are the same shape USAGE htri_t H5S__all_shape_same(space1, space2) - const H5S_t *space1; IN: First dataspace to check - const H5S_t *space2; IN: Second dataspace to check + H5S_t *space1; IN: First dataspace to check + H5S_t *space2; IN: Second dataspace to check RETURNS TRUE / FALSE / FAIL DESCRIPTION @@ -907,7 +907,7 @@ H5S__all_is_regular(const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static htri_t -H5S__all_shape_same(const H5S_t *space1, const H5S_t *space2) +H5S__all_shape_same(H5S_t *space1, H5S_t *space2) { int space1_dim; /* Current dimension in first dataspace */ int space2_dim; /* Current dimension in second dataspace */ @@ -957,7 +957,7 @@ done: Detect intersections of selection with block USAGE htri_t H5S__all_intersect_block(space, start, end) - const H5S_t *space; IN: Dataspace with selection to use + H5S_t *space; IN: Dataspace with selection to use const hsize_t *start; IN: Starting coordinate for block const hsize_t *end; IN: Ending coordinate for block RETURNS @@ -970,7 +970,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ htri_t -H5S__all_intersect_block(const H5S_t H5_ATTR_UNUSED *space, const hsize_t H5_ATTR_UNUSED *start, +H5S__all_intersect_block(H5S_t H5_ATTR_UNUSED *space, const hsize_t H5_ATTR_UNUSED *start, const hsize_t H5_ATTR_UNUSED *end) { FUNC_ENTER_STATIC_NOERR diff --git a/src/H5Shyper.c b/src/H5Shyper.c index 10708d2..438afef 100644 --- a/src/H5Shyper.c +++ b/src/H5Shyper.c @@ -160,7 +160,7 @@ static herr_t H5S__hyper_iter_get_seq_list_opt(H5S_sel_iter_t *iter, size_t max static herr_t H5S__hyper_iter_get_seq_list_single(H5S_sel_iter_t *iter, size_t maxseq, size_t maxelem, size_t *nseq, size_t *nelem, hsize_t *off, size_t *len); static herr_t H5S__hyper_proj_int_build_proj(H5S_hyper_project_intersect_ud_t *udata); -static herr_t H5S__hyper_proj_int_iterate(const H5S_hyper_span_info_t *ss_span_info, +static herr_t H5S__hyper_proj_int_iterate(H5S_hyper_span_info_t * ss_span_info, const H5S_hyper_span_info_t *sis_span_info, hsize_t count, unsigned depth, H5S_hyper_project_intersect_ud_t *udata); static void H5S__hyper_get_clip_diminfo(hsize_t start, hsize_t stride, hsize_t *count, hsize_t *block, @@ -173,8 +173,8 @@ static herr_t H5S__hyper_copy(H5S_t *dst, const H5S_t *src, hbool_t share_sele static herr_t H5S__hyper_release(H5S_t *space); static htri_t H5S__hyper_is_valid(const H5S_t *space); static hsize_t H5S__hyper_span_nblocks(H5S_hyper_span_info_t *spans); -static hssize_t H5S__hyper_serial_size(const H5S_t *space); -static herr_t H5S__hyper_serialize(const H5S_t *space, uint8_t **p); +static hssize_t H5S__hyper_serial_size(H5S_t *space); +static herr_t H5S__hyper_serialize(H5S_t *space, uint8_t **p); static herr_t H5S__hyper_deserialize(H5S_t **space, const uint8_t **p); static herr_t H5S__hyper_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); static herr_t H5S__hyper_offset(const H5S_t *space, hsize_t *offset); @@ -182,14 +182,14 @@ static int H5S__hyper_unlim_dim(const H5S_t *space); static herr_t H5S__hyper_num_elem_non_unlim(const H5S_t *space, hsize_t *num_elem_non_unlim); static htri_t H5S__hyper_is_contiguous(const H5S_t *space); static htri_t H5S__hyper_is_single(const H5S_t *space); -static htri_t H5S__hyper_is_regular(const H5S_t *space); -static htri_t H5S__hyper_shape_same(const H5S_t *space1, const H5S_t *space2); -static htri_t H5S__hyper_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end); +static htri_t H5S__hyper_is_regular(H5S_t *space); +static htri_t H5S__hyper_shape_same(H5S_t *space1, H5S_t *space2); +static htri_t H5S__hyper_intersect_block(H5S_t *space, const hsize_t *start, const hsize_t *end); static herr_t H5S__hyper_adjust_u(H5S_t *space, const hsize_t *offset); static herr_t H5S__hyper_adjust_s(H5S_t *space, const hssize_t *offset); static herr_t H5S__hyper_project_scalar(const H5S_t *space, hsize_t *offset); static herr_t H5S__hyper_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); -static herr_t H5S__hyper_iter_init(const H5S_t *space, H5S_sel_iter_t *iter); +static herr_t H5S__hyper_iter_init(H5S_t *space, H5S_sel_iter_t *iter); /* Selection iteration callbacks */ static herr_t H5S__hyper_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords); @@ -558,7 +558,7 @@ H5S__hyper_get_op_gen(void) *------------------------------------------------------------------------- */ static herr_t -H5S__hyper_iter_init(const H5S_t *space, H5S_sel_iter_t *iter) +H5S__hyper_iter_init(H5S_t *space, H5S_sel_iter_t *iter) { hsize_t *slab_size; /* Pointer to the dataspace dimensions to use for calc. slab */ hsize_t acc; /* Accumulator for computing cumulative sizes */ @@ -585,7 +585,7 @@ H5S__hyper_iter_init(const H5S_t *space, H5S_sel_iter_t *iter) * to be impossible. */ if (space->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_NO) - H5S__hyper_rebuild((H5S_t *)space); /* Casting away const OK -NAF */ + H5S__hyper_rebuild(space); /* Check for the special case of just one H5Sselect_hyperslab call made */ if (space->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_YES) { @@ -3556,7 +3556,7 @@ H5S__hyper_get_enc_size_real(hsize_t max_size) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S__hyper_get_version_enc_size(const H5S_t *space, hsize_t block_count, uint32_t *version, uint8_t *enc_size) +H5S__hyper_get_version_enc_size(H5S_t *space, hsize_t block_count, uint32_t *version, uint8_t *enc_size) { hsize_t bounds_start[H5S_MAX_RANK]; /* Starting coordinate of bounding box */ hsize_t bounds_end[H5S_MAX_RANK]; /* Opposite coordinate of bounding box */ @@ -3660,7 +3660,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static hssize_t -H5S__hyper_serial_size(const H5S_t *space) +H5S__hyper_serial_size(H5S_t *space) { hsize_t block_count = 0; /* block counter for regular hyperslabs */ uint32_t version; /* Version number */ @@ -3820,7 +3820,7 @@ H5S__hyper_serialize_helper(const H5S_hyper_span_info_t *spans, hsize_t *start, Serialize the current selection into a user-provided buffer. USAGE herr_t H5S__hyper_serialize(space, p) - const H5S_t *space; IN: Dataspace with selection to serialize + H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. @@ -3835,7 +3835,7 @@ H5S__hyper_serialize_helper(const H5S_hyper_span_info_t *spans, hsize_t *start, REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S__hyper_serialize(const H5S_t *space, uint8_t **p) +H5S__hyper_serialize(H5S_t *space, uint8_t **p) { const H5S_hyper_dim_t *diminfo; /* Alias for dataspace's diminfo information */ hsize_t tmp_count[H5S_MAX_RANK]; /* Temporary hyperslab counts */ @@ -5137,7 +5137,7 @@ done: Check if a hyperslab selection is "regular" USAGE htri_t H5S__hyper_is_regular(space) - const H5S_t *space; IN: Dataspace pointer to check + H5S_t *space; IN: Dataspace pointer to check RETURNS TRUE/FALSE/FAIL DESCRIPTION @@ -5150,7 +5150,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static htri_t -H5S__hyper_is_regular(const H5S_t *space) +H5S__hyper_is_regular(H5S_t *space) { htri_t ret_value = FAIL; /* return value */ @@ -5163,7 +5163,7 @@ H5S__hyper_is_regular(const H5S_t *space) * to be impossible. */ if (space->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_NO) - H5S__hyper_rebuild((H5S_t *)space); /* Casting away const OK -NAF */ + H5S__hyper_rebuild(space); /* Only simple check for regular hyperslabs for now... */ if (space->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_YES) @@ -5387,8 +5387,8 @@ H5S__hyper_spans_shape_same(const H5S_hyper_span_info_t *span_info1, const H5S_h Check if a two hyperslab selections are the same shape USAGE htri_t H5S__hyper_shape_same(space1, space2) - const H5S_t *space1; IN: First dataspace to check - const H5S_t *space2; IN: Second dataspace to check + H5S_t *space1; IN: First dataspace to check + H5S_t *space2; IN: Second dataspace to check RETURNS TRUE / FALSE / FAIL DESCRIPTION @@ -5405,7 +5405,7 @@ H5S__hyper_spans_shape_same(const H5S_hyper_span_info_t *span_info1, const H5S_h REVISION LOG --------------------------------------------------------------------------*/ static htri_t -H5S__hyper_shape_same(const H5S_t *space1, const H5S_t *space2) +H5S__hyper_shape_same(H5S_t *space1, H5S_t *space2) { unsigned space1_rank; /* Number of dimensions of first dataspace */ unsigned space2_rank; /* Number of dimensions of second dataspace */ @@ -5428,9 +5428,9 @@ H5S__hyper_shape_same(const H5S_t *space1, const H5S_t *space2) /* Rebuild diminfo if it is invalid and has not been confirmed to be * impossible */ if (space1->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_NO) - H5S__hyper_rebuild((H5S_t *)space1); /* Casting away const OK -QAK */ + H5S__hyper_rebuild(space1); if (space2->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_NO) - H5S__hyper_rebuild((H5S_t *)space2); /* Casting away const OK -QAK */ + H5S__hyper_rebuild(space2); /* If both are regular hyperslabs, compare their diminfo values */ if (space1->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_YES && @@ -5475,11 +5475,11 @@ H5S__hyper_shape_same(const H5S_t *space1, const H5S_t *space2) /* Make certain that both selections have span trees */ if (NULL == space1->select.sel_info.hslab->span_lst) - if (H5S__hyper_generate_spans((H5S_t *)space1) < 0) /* Casting away const OK -QAK */ + if (H5S__hyper_generate_spans(space1) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_UNINITIALIZED, FAIL, "can't construct span tree for hyperslab selection") if (NULL == space2->select.sel_info.hslab->span_lst) - if (H5S__hyper_generate_spans((H5S_t *)space2) < 0) /* Casting away const OK -QAK */ + if (H5S__hyper_generate_spans(space2) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_UNINITIALIZED, FAIL, "can't construct span tree for hyperslab selection") @@ -6066,7 +6066,7 @@ done: Detect intersections of selection with block USAGE htri_t H5S__hyper_intersect_block(space, start, end) - const H5S_t *space; IN: Dataspace with selection to use + H5S_t *space; IN: Dataspace with selection to use const hsize_t *start; IN: Starting coordinate for block const hsize_t *end; IN: Ending coordinate for block RETURNS @@ -6081,7 +6081,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static htri_t -H5S__hyper_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end) +H5S__hyper_intersect_block(H5S_t *space, const hsize_t *start, const hsize_t *end) { htri_t ret_value = FAIL; /* Return value */ @@ -6097,7 +6097,7 @@ H5S__hyper_intersect_block(const H5S_t *space, const hsize_t *start, const hsize * to be impossible. */ if (space->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_NO) - H5S__hyper_rebuild((H5S_t *)space); /* Casting away const OK -QAK */ + H5S__hyper_rebuild(space); /* Check for regular hyperslab intersection */ if (space->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_YES) { @@ -11144,9 +11144,8 @@ sis_span_info unsigned depth; IN: Depth of iteration (in terms of rank) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S__hyper_proj_int_iterate(const H5S_hyper_span_info_t *ss_span_info, - const H5S_hyper_span_info_t *sis_span_info, hsize_t count, unsigned depth, - H5S_hyper_project_intersect_ud_t *udata) +H5S__hyper_proj_int_iterate(H5S_hyper_span_info_t *ss_span_info, const H5S_hyper_span_info_t *sis_span_info, + hsize_t count, unsigned depth, H5S_hyper_project_intersect_ud_t *udata) { const H5S_hyper_span_t *ss_span; /* Current span in source space */ const H5S_hyper_span_t *sis_span; /* Current span in source intersect space */ @@ -11405,11 +11404,11 @@ also that proj_space can share some span trees with dst_space, so proj_space mus if dst_space must be preserved. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S__hyper_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, - const H5S_t *src_intersect_space, H5S_t *proj_space, hbool_t share_selection) +H5S__hyper_project_intersection(H5S_t *src_space, H5S_t *dst_space, H5S_t *src_intersect_space, + H5S_t *proj_space, hbool_t share_selection) { H5S_hyper_project_intersect_ud_t udata; /* User data for subroutines */ - const H5S_hyper_span_info_t * ss_span_info; + H5S_hyper_span_info_t * ss_span_info; const H5S_hyper_span_info_t * ds_span_info; H5S_hyper_span_info_t * ss_span_info_buf = NULL; H5S_hyper_span_info_t * ds_span_info_buf = NULL; @@ -11435,7 +11434,7 @@ H5S__hyper_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, if (H5S_GET_SELECT_TYPE(src_space) == H5S_SEL_HYPERSLABS) { /* Make certain the selection has a span tree */ if (NULL == src_space->select.sel_info.hslab->span_lst) - if (H5S__hyper_generate_spans((H5S_t *)src_space) < 0) /* Casting away const OK -NAF */ + if (H5S__hyper_generate_spans(src_space) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_UNINITIALIZED, FAIL, "can't construct span tree for source hyperslab selection") @@ -11457,7 +11456,7 @@ H5S__hyper_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, if (H5S_GET_SELECT_TYPE(dst_space) == H5S_SEL_HYPERSLABS) { /* Make certain the selection has a span tree */ if (NULL == dst_space->select.sel_info.hslab->span_lst) - if (H5S__hyper_generate_spans((H5S_t *)dst_space) < 0) /* Casting away const OK -NAF */ + if (H5S__hyper_generate_spans(dst_space) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_UNINITIALIZED, FAIL, "can't construct span tree for dsetination hyperslab selection") @@ -11477,7 +11476,7 @@ H5S__hyper_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, /* Make certain the source intersect selection has a span tree */ if (NULL == src_intersect_space->select.sel_info.hslab->span_lst) - if (H5S__hyper_generate_spans((H5S_t *)src_intersect_space) < 0) /* Casting away const OK -NAF */ + if (H5S__hyper_generate_spans(src_intersect_space) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_UNINITIALIZED, FAIL, "can't construct span tree for source intersect hyperslab selection") diff --git a/src/H5Smpio.c b/src/H5Smpio.c index 7b85209..1a43c09 100644 --- a/src/H5Smpio.c +++ b/src/H5Smpio.c @@ -73,10 +73,10 @@ static herr_t H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_poin static herr_t H5S__mpio_point_type(const H5S_t *space, size_t elmt_size, MPI_Datatype *new_type, int *count, hbool_t *is_derived_type, hbool_t do_permute, hsize_t **permute_map, hbool_t *is_permuted); -static herr_t H5S__mpio_permute_type(const H5S_t *space, size_t elmt_size, hsize_t **permute_map, +static herr_t H5S__mpio_permute_type(H5S_t *space, size_t elmt_size, hsize_t **permute_map, MPI_Datatype *new_type, int *count, hbool_t *is_derived_type); -static herr_t H5S__mpio_reg_hyper_type(const H5S_t *space, size_t elmt_size, MPI_Datatype *new_type, - int *count, hbool_t *is_derived_type); +static herr_t H5S__mpio_reg_hyper_type(H5S_t *space, size_t elmt_size, MPI_Datatype *new_type, int *count, + hbool_t *is_derived_type); static herr_t H5S__mpio_span_hyper_type(const H5S_t *space, size_t elmt_size, MPI_Datatype *new_type, int *count, hbool_t *is_derived_type); static herr_t H5S__release_datatype(H5S_mpio_mpitype_list_t *type_list); @@ -95,6 +95,9 @@ static herr_t H5S__obtain_datatype(H5S_hyper_span_info_t *spans, const hsize_t * /* Declare a free list to manage the H5S_mpio_mpitype_node_t struct */ H5FL_DEFINE_STATIC(H5S_mpio_mpitype_node_t); +/* Declare a free list to manage dataspace selection iterators */ +H5FL_EXTERN(H5S_sel_iter_t); + /*------------------------------------------------------------------------- * Function: H5S__mpio_all_type * @@ -501,17 +504,19 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5S__mpio_permute_type(const H5S_t *space, size_t elmt_size, hsize_t **permute, MPI_Datatype *new_type, - int *count, hbool_t *is_derived_type) +H5S__mpio_permute_type(H5S_t *space, size_t elmt_size, hsize_t **permute, MPI_Datatype *new_type, int *count, + hbool_t *is_derived_type) { - MPI_Aint * disp = NULL; /* Datatype displacement for each point*/ - H5S_sel_iter_t sel_iter; /* Selection iteration info */ - hbool_t sel_iter_init = FALSE; /* Selection iteration info has been initialized */ - hssize_t snum_points; /* Signed number of elements in selection */ - hsize_t num_points; /* Number of points in the selection */ - size_t max_elem; /* Maximum number of elements allowed in sequences */ - hsize_t u; /* Local index variable */ - herr_t ret_value = SUCCEED; /* Return value */ + MPI_Aint * disp = NULL; /* Datatype displacement for each point*/ + H5S_sel_iter_t *sel_iter = NULL; /* Selection iteration info */ + hbool_t sel_iter_init = FALSE; /* Selection iteration info has been initialized */ + hssize_t snum_points; /* Signed number of elements in selection */ + hsize_t num_points; /* Number of points in the selection */ + hsize_t * off = NULL; + size_t * len = NULL; + size_t max_elem; /* Maximum number of elements allowed in sequences */ + hsize_t u; /* Local index variable */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -527,8 +532,18 @@ H5S__mpio_permute_type(const H5S_t *space, size_t elmt_size, hsize_t **permute, if (NULL == (disp = (MPI_Aint *)H5MM_malloc(sizeof(MPI_Aint) * num_points))) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate array of displacements") + /* Allocate arrays to hold sequence offsets and lengths */ + if (NULL == (off = H5MM_malloc(H5D_IO_VECTOR_SIZE * sizeof(*off)))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate sequence offsets array") + if (NULL == (len = H5MM_malloc(H5D_IO_VECTOR_SIZE * sizeof(*len)))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate sequence lengths array") + + /* Allocate a selection iterator for iterating over the dataspace */ + if (NULL == (sel_iter = H5FL_MALLOC(H5S_sel_iter_t))) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "couldn't allocate dataspace selection iterator") + /* Initialize selection iterator */ - if (H5S_select_iter_init(&sel_iter, space, elmt_size, 0) < 0) + if (H5S_select_iter_init(sel_iter, space, elmt_size, 0) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator") sel_iter_init = TRUE; /* Selection iteration info has been initialized */ @@ -538,14 +553,12 @@ H5S__mpio_permute_type(const H5S_t *space, size_t elmt_size, hsize_t **permute, /* Loop, while elements left in selection */ u = 0; while (max_elem > 0) { - hsize_t off[H5D_IO_VECTOR_SIZE]; /* Array to store sequence offsets */ - size_t len[H5D_IO_VECTOR_SIZE]; /* Array to store sequence lengths */ - size_t nelem; /* Number of elements used in sequences */ - size_t nseq; /* Number of sequences generated */ - size_t curr_seq; /* Current sequence being worked on */ + size_t nelem; /* Number of elements used in sequences */ + size_t nseq; /* Number of sequences generated */ + size_t curr_seq; /* Current sequence being worked on */ /* Get the sequences of bytes */ - if (H5S_SELECT_ITER_GET_SEQ_LIST(&sel_iter, (size_t)H5D_IO_VECTOR_SIZE, max_elem, &nseq, &nelem, off, + if (H5S_SELECT_ITER_GET_SEQ_LIST(sel_iter, (size_t)H5D_IO_VECTOR_SIZE, max_elem, &nseq, &nelem, off, len) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "sequence length generation failed") @@ -602,9 +615,14 @@ H5S__mpio_permute_type(const H5S_t *space, size_t elmt_size, hsize_t **permute, done: /* Release selection iterator */ - if (sel_iter_init) - if (H5S_SELECT_ITER_RELEASE(&sel_iter) < 0) + if (sel_iter) { + if (sel_iter_init && H5S_SELECT_ITER_RELEASE(sel_iter) < 0) HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release selection iterator") + sel_iter = H5FL_FREE(H5S_sel_iter_t, sel_iter); + } + + H5MM_free(len); + H5MM_free(off); /* Free memory */ if (disp) @@ -634,11 +652,11 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5S__mpio_reg_hyper_type(const H5S_t *space, size_t elmt_size, MPI_Datatype *new_type, int *count, +H5S__mpio_reg_hyper_type(H5S_t *space, size_t elmt_size, MPI_Datatype *new_type, int *count, hbool_t *is_derived_type) { - H5S_sel_iter_t sel_iter; /* Selection iteration info */ - hbool_t sel_iter_init = FALSE; /* Selection iteration info has been initialized */ + H5S_sel_iter_t *sel_iter = NULL; /* Selection iteration info */ + hbool_t sel_iter_init = FALSE; /* Selection iteration info has been initialized */ struct dim { /* less hassle than malloc/free & ilk */ hssize_t start; @@ -668,32 +686,37 @@ H5S__mpio_reg_hyper_type(const H5S_t *space, size_t elmt_size, MPI_Datatype *new HDassert(sizeof(MPI_Aint) >= sizeof(elmt_size)); bigio_count = H5_mpi_get_bigio_count(); + + /* Allocate a selection iterator for iterating over the dataspace */ + if (NULL == (sel_iter = H5FL_MALLOC(H5S_sel_iter_t))) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "couldn't allocate dataspace selection iterator") + /* Initialize selection iterator */ - if (H5S_select_iter_init(&sel_iter, space, elmt_size, 0) < 0) + if (H5S_select_iter_init(sel_iter, space, elmt_size, 0) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator") sel_iter_init = TRUE; /* Selection iteration info has been initialized */ /* Abbreviate args */ - diminfo = sel_iter.u.hyp.diminfo; + diminfo = sel_iter->u.hyp.diminfo; HDassert(diminfo); /* Make a local copy of the dimension info so we can operate with them */ /* Check if this is a "flattened" regular hyperslab selection */ - if (sel_iter.u.hyp.iter_rank != 0 && sel_iter.u.hyp.iter_rank < space->extent.rank) { + if (sel_iter->u.hyp.iter_rank != 0 && sel_iter->u.hyp.iter_rank < space->extent.rank) { /* Flattened selection */ - rank = sel_iter.u.hyp.iter_rank; + rank = sel_iter->u.hyp.iter_rank; #ifdef H5S_DEBUG if (H5DEBUG(S)) HDfprintf(H5DEBUG(S), "%s: Flattened selection\n", FUNC); #endif for (u = 0; u < rank; ++u) { H5_CHECK_OVERFLOW(diminfo[u].start, hsize_t, hssize_t) - d[u].start = (hssize_t)diminfo[u].start + sel_iter.u.hyp.sel_off[u]; + d[u].start = (hssize_t)diminfo[u].start + sel_iter->u.hyp.sel_off[u]; d[u].strid = diminfo[u].stride; d[u].block = diminfo[u].block; d[u].count = diminfo[u].count; - d[u].xtent = sel_iter.u.hyp.size[u]; + d[u].xtent = sel_iter->u.hyp.size[u]; #ifdef H5S_DEBUG if (H5DEBUG(S)) { @@ -951,9 +974,11 @@ H5S__mpio_reg_hyper_type(const H5S_t *space, size_t elmt_size, MPI_Datatype *new done: /* Release selection iterator */ - if (sel_iter_init) - if (H5S_SELECT_ITER_RELEASE(&sel_iter) < 0) + if (sel_iter) { + if (sel_iter_init && H5S_SELECT_ITER_RELEASE(sel_iter) < 0) HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release selection iterator") + sel_iter = H5FL_FREE(H5S_sel_iter_t, sel_iter); + } #ifdef H5S_DEBUG if (H5DEBUG(S)) @@ -1364,7 +1389,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5S_mpio_space_type(const H5S_t *space, size_t elmt_size, MPI_Datatype *new_type, int *count, +H5S_mpio_space_type(H5S_t *space, size_t elmt_size, MPI_Datatype *new_type, int *count, hbool_t *is_derived_type, hbool_t do_permute, hsize_t **permute_map, hbool_t *is_permuted) { herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5Snone.c b/src/H5Snone.c index 82e513e..9292cd4 100644 --- a/src/H5Snone.c +++ b/src/H5Snone.c @@ -49,22 +49,22 @@ static herr_t H5S__none_copy(H5S_t *dst, const H5S_t *src, hbool_t share_selection); static herr_t H5S__none_release(H5S_t *space); static htri_t H5S__none_is_valid(const H5S_t *space); -static hssize_t H5S__none_serial_size(const H5S_t *space); -static herr_t H5S__none_serialize(const H5S_t *space, uint8_t **p); +static hssize_t H5S__none_serial_size(H5S_t *space); +static herr_t H5S__none_serialize(H5S_t *space, uint8_t **p); static herr_t H5S__none_deserialize(H5S_t **space, const uint8_t **p); static herr_t H5S__none_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); static herr_t H5S__none_offset(const H5S_t *space, hsize_t *off); static int H5S__none_unlim_dim(const H5S_t *space); static htri_t H5S__none_is_contiguous(const H5S_t *space); static htri_t H5S__none_is_single(const H5S_t *space); -static htri_t H5S__none_is_regular(const H5S_t *space); -static htri_t H5S__none_shape_same(const H5S_t *space1, const H5S_t *space2); -static htri_t H5S__none_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end); +static htri_t H5S__none_is_regular(H5S_t *space); +static htri_t H5S__none_shape_same(H5S_t *space1, H5S_t *space2); +static htri_t H5S__none_intersect_block(H5S_t *space, const hsize_t *start, const hsize_t *end); static herr_t H5S__none_adjust_u(H5S_t *space, const hsize_t *offset); static herr_t H5S__none_adjust_s(H5S_t *space, const hssize_t *offset); static herr_t H5S__none_project_scalar(const H5S_t *space, hsize_t *offset); static herr_t H5S__none_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); -static herr_t H5S__none_iter_init(const H5S_t *space, H5S_sel_iter_t *iter); +static herr_t H5S__none_iter_init(H5S_t *space, H5S_sel_iter_t *iter); /* Selection iteration callbacks */ static herr_t H5S__none_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords); @@ -144,7 +144,7 @@ static const H5S_sel_iter_class_t H5S_sel_iter_none[1] = {{ *------------------------------------------------------------------------- */ static herr_t -H5S__none_iter_init(const H5S_t H5_ATTR_UNUSED *space, H5S_sel_iter_t *iter) +H5S__none_iter_init(H5S_t H5_ATTR_UNUSED *space, H5S_sel_iter_t *iter) { FUNC_ENTER_STATIC_NOERR @@ -513,7 +513,7 @@ H5S__none_is_valid(const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static hssize_t -H5S__none_serial_size(const H5S_t H5_ATTR_UNUSED *space) +H5S__none_serial_size(H5S_t H5_ATTR_UNUSED *space) { FUNC_ENTER_STATIC_NOERR @@ -533,7 +533,7 @@ H5S__none_serial_size(const H5S_t H5_ATTR_UNUSED *space) Serialize the current selection into a user-provided buffer. USAGE herr_t H5S__none_serialize(space, p) - const H5S_t *space; IN: Dataspace with selection to serialize + H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. @@ -548,7 +548,7 @@ H5S__none_serial_size(const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S__none_serialize(const H5S_t *space, uint8_t **p) +H5S__none_serialize(H5S_t *space, uint8_t **p) { uint8_t *pp = (*p); /* Local pointer for decoding */ @@ -803,7 +803,7 @@ H5S__none_is_single(const H5S_t H5_ATTR_UNUSED *space) Check if a "none" selection is "regular" USAGE htri_t H5S__none_is_regular(space) - const H5S_t *space; IN: Dataspace pointer to check + H5S_t *space; IN: Dataspace pointer to check RETURNS TRUE/FALSE/FAIL DESCRIPTION @@ -816,7 +816,7 @@ H5S__none_is_single(const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static htri_t -H5S__none_is_regular(const H5S_t H5_ATTR_UNUSED *space) +H5S__none_is_regular(H5S_t H5_ATTR_UNUSED *space) { FUNC_ENTER_STATIC_NOERR @@ -833,8 +833,8 @@ H5S__none_is_regular(const H5S_t H5_ATTR_UNUSED *space) Check if a two "none" selections are the same shape USAGE htri_t H5S__none_shape_same(space1, space2) - const H5S_t *space1; IN: First dataspace to check - const H5S_t *space2; IN: Second dataspace to check + H5S_t *space1; IN: First dataspace to check + H5S_t *space2; IN: Second dataspace to check RETURNS TRUE / FALSE / FAIL DESCRIPTION @@ -846,7 +846,7 @@ H5S__none_is_regular(const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static htri_t -H5S__none_shape_same(const H5S_t H5_ATTR_UNUSED *space1, const H5S_t H5_ATTR_UNUSED *space2) +H5S__none_shape_same(H5S_t H5_ATTR_UNUSED *space1, H5S_t H5_ATTR_UNUSED *space2) { FUNC_ENTER_STATIC_NOERR @@ -864,7 +864,7 @@ H5S__none_shape_same(const H5S_t H5_ATTR_UNUSED *space1, const H5S_t H5_ATTR_UNU Detect intersections of selection with block USAGE htri_t H5S__none_intersect_block(space, start, end) - const H5S_t *space; IN: Dataspace with selection to use + H5S_t *space; IN: Dataspace with selection to use const hsize_t *start; IN: Starting coordinate for block const hsize_t *end; IN: Ending coordinate for block RETURNS @@ -877,7 +877,7 @@ H5S__none_shape_same(const H5S_t H5_ATTR_UNUSED *space1, const H5S_t H5_ATTR_UNU REVISION LOG --------------------------------------------------------------------------*/ htri_t -H5S__none_intersect_block(const H5S_t H5_ATTR_UNUSED *space, const hsize_t H5_ATTR_UNUSED *start, +H5S__none_intersect_block(H5S_t H5_ATTR_UNUSED *space, const hsize_t H5_ATTR_UNUSED *start, const hsize_t H5_ATTR_UNUSED *end) { FUNC_ENTER_STATIC_NOERR diff --git a/src/H5Spkg.h b/src/H5Spkg.h index 5ad8684..8313529 100644 --- a/src/H5Spkg.h +++ b/src/H5Spkg.h @@ -238,9 +238,9 @@ typedef herr_t (*H5S_sel_release_func_t)(H5S_t *space); /* Method to determine if current selection is valid for dataspace */ typedef htri_t (*H5S_sel_is_valid_func_t)(const H5S_t *space); /* Method to determine number of bytes required to store current selection */ -typedef hssize_t (*H5S_sel_serial_size_func_t)(const H5S_t *space); +typedef hssize_t (*H5S_sel_serial_size_func_t)(H5S_t *space); /* Method to store current selection in "serialized" form (a byte sequence suitable for storing on disk) */ -typedef herr_t (*H5S_sel_serialize_func_t)(const H5S_t *space, uint8_t **p); +typedef herr_t (*H5S_sel_serialize_func_t)(H5S_t *space, uint8_t **p); /* Method to create selection from "serialized" form (a byte sequence suitable for storing on disk) */ typedef herr_t (*H5S_sel_deserialize_func_t)(H5S_t **space, const uint8_t **p); /* Method to determine smallest n-D bounding box containing the current selection */ @@ -256,12 +256,11 @@ typedef htri_t (*H5S_sel_is_contiguous_func_t)(const H5S_t *space); /* Method to determine if current selection is a single block */ typedef htri_t (*H5S_sel_is_single_func_t)(const H5S_t *space); /* Method to determine if current selection is "regular" */ -typedef htri_t (*H5S_sel_is_regular_func_t)(const H5S_t *space); +typedef htri_t (*H5S_sel_is_regular_func_t)(H5S_t *space); /* Method to determine if two dataspaces' selections are the same shape */ -typedef htri_t (*H5S_sel_shape_same_func_t)(const H5S_t *space1, const H5S_t *space2); +typedef htri_t (*H5S_sel_shape_same_func_t)(H5S_t *space1, H5S_t *space2); /* Method to determine if selection intersects a block */ -typedef htri_t (*H5S_sel_intersect_block_func_t)(const H5S_t *space, const hsize_t *start, - const hsize_t *end); +typedef htri_t (*H5S_sel_intersect_block_func_t)(H5S_t *space, const hsize_t *start, const hsize_t *end); /* Method to adjust a selection by an offset */ typedef herr_t (*H5S_sel_adjust_u_func_t)(H5S_t *space, const hsize_t *offset); /* Method to adjust a selection by an offset (signed) */ @@ -271,7 +270,7 @@ typedef herr_t (*H5S_sel_project_scalar)(const H5S_t *space, hsize_t *offset); /* Method to construct selection projection onto/into simple dataspace */ typedef herr_t (*H5S_sel_project_simple)(const H5S_t *space, H5S_t *new_space, hsize_t *offset); /* Method to initialize iterator for current selection */ -typedef herr_t (*H5S_sel_iter_init_func_t)(const H5S_t *space, H5S_sel_iter_t *sel_iter); +typedef herr_t (*H5S_sel_iter_init_func_t)(H5S_t *space, H5S_sel_iter_t *sel_iter); /* Selection class information */ typedef struct { @@ -401,9 +400,8 @@ H5_DLL herr_t H5S__extent_copy_real(H5S_extent_t *dst, const H5S_extent_t *src, H5_DLL uint64_t H5S__hyper_get_op_gen(void); H5_DLL void H5S__hyper_rebuild(H5S_t *space); H5_DLL herr_t H5S__modify_select(H5S_t *space1, H5S_seloper_t op, H5S_t *space2); -H5_DLL herr_t H5S__hyper_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, - const H5S_t *src_intersect_space, H5S_t *proj_space, - hbool_t share_space); +H5_DLL herr_t H5S__hyper_project_intersection(H5S_t *src_space, H5S_t *dst_space, H5S_t *src_intersect_space, + H5S_t *proj_space, hbool_t share_space); /* Testing functions */ #ifdef H5S_TESTING diff --git a/src/H5Spoint.c b/src/H5Spoint.c index 72077e2..1a9a95c 100644 --- a/src/H5Spoint.c +++ b/src/H5Spoint.c @@ -58,22 +58,22 @@ static void H5S__free_pnt_list(H5S_pnt_list_t *pnt_lst); static herr_t H5S__point_copy(H5S_t *dst, const H5S_t *src, hbool_t share_selection); static herr_t H5S__point_release(H5S_t *space); static htri_t H5S__point_is_valid(const H5S_t *space); -static hssize_t H5S__point_serial_size(const H5S_t *space); -static herr_t H5S__point_serialize(const H5S_t *space, uint8_t **p); +static hssize_t H5S__point_serial_size(H5S_t *space); +static herr_t H5S__point_serialize(H5S_t *space, uint8_t **p); static herr_t H5S__point_deserialize(H5S_t **space, const uint8_t **p); static herr_t H5S__point_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); static herr_t H5S__point_offset(const H5S_t *space, hsize_t *off); static int H5S__point_unlim_dim(const H5S_t *space); static htri_t H5S__point_is_contiguous(const H5S_t *space); static htri_t H5S__point_is_single(const H5S_t *space); -static htri_t H5S__point_is_regular(const H5S_t *space); -static htri_t H5S__point_shape_same(const H5S_t *space1, const H5S_t *space2); -static htri_t H5S__point_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end); +static htri_t H5S__point_is_regular(H5S_t *space); +static htri_t H5S__point_shape_same(H5S_t *space1, H5S_t *space2); +static htri_t H5S__point_intersect_block(H5S_t *space, const hsize_t *start, const hsize_t *end); static herr_t H5S__point_adjust_u(H5S_t *space, const hsize_t *offset); static herr_t H5S__point_adjust_s(H5S_t *space, const hssize_t *offset); static herr_t H5S__point_project_scalar(const H5S_t *space, hsize_t *offset); static herr_t H5S__point_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); -static herr_t H5S__point_iter_init(const H5S_t *space, H5S_sel_iter_t *iter); +static herr_t H5S__point_iter_init(H5S_t *space, H5S_sel_iter_t *iter); static herr_t H5S__point_get_version_enc_size(const H5S_t *space, uint32_t *version, uint8_t *enc_size); /* Selection iteration callbacks */ @@ -160,7 +160,7 @@ H5FL_DEFINE_STATIC(H5S_pnt_list_t); *------------------------------------------------------------------------- */ static herr_t -H5S__point_iter_init(const H5S_t *space, H5S_sel_iter_t *iter) +H5S__point_iter_init(H5S_t *space, H5S_sel_iter_t *iter) { herr_t ret_value = SUCCEED; /* Return value */ @@ -1087,7 +1087,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static hssize_t -H5S__point_serial_size(const H5S_t *space) +H5S__point_serial_size(H5S_t *space) { H5S_pnt_node_t *curr; /* Point information nodes */ uint32_t version; /* Version number */ @@ -1134,7 +1134,7 @@ done: Serialize the current selection into a user-provided buffer. USAGE herr_t H5S__point_serialize(space, p) - const H5S_t *space; IN: Dataspace with selection to serialize + H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. @@ -1149,7 +1149,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S__point_serialize(const H5S_t *space, uint8_t **p) +H5S__point_serialize(H5S_t *space, uint8_t **p) { H5S_pnt_node_t *curr; /* Point information nodes */ uint8_t * pp; /* Local pointer for encoding */ @@ -1688,7 +1688,7 @@ H5S__point_is_single(const H5S_t *space) Check if a point selection is "regular" USAGE htri_t H5S__point_is_regular(space) - const H5S_t *space; IN: Dataspace pointer to check + H5S_t *space; IN: Dataspace pointer to check RETURNS TRUE/FALSE/FAIL DESCRIPTION @@ -1703,7 +1703,7 @@ H5S__point_is_single(const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ static htri_t -H5S__point_is_regular(const H5S_t *space) +H5S__point_is_regular(H5S_t *space) { htri_t ret_value = FAIL; /* Return value */ @@ -1728,8 +1728,8 @@ H5S__point_is_regular(const H5S_t *space) Check if a two "point" selections are the same shape USAGE htri_t H5S__point_shape_same(space1, space2) - const H5S_t *space1; IN: First dataspace to check - const H5S_t *space2; IN: Second dataspace to check + H5S_t *space1; IN: First dataspace to check + H5S_t *space2; IN: Second dataspace to check RETURNS TRUE / FALSE / FAIL DESCRIPTION @@ -1741,7 +1741,7 @@ H5S__point_is_regular(const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ static htri_t -H5S__point_shape_same(const H5S_t *space1, const H5S_t *space2) +H5S__point_shape_same(H5S_t *space1, H5S_t *space2) { H5S_pnt_node_t *pnt1, *pnt2; /* Point information nodes */ hssize_t offset[H5S_MAX_RANK]; /* Offset between the selections */ @@ -1834,7 +1834,7 @@ done: Detect intersections of selection with block USAGE htri_t H5S__point_intersect_block(space, start, end) - const H5S_t *space; IN: Dataspace with selection to use + H5S_t *space; IN: Dataspace with selection to use const hsize_t *start; IN: Starting coordinate for block const hsize_t *end; IN: Ending coordinate for block RETURNS @@ -1847,7 +1847,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ htri_t -H5S__point_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end) +H5S__point_intersect_block(H5S_t *space, const hsize_t *start, const hsize_t *end) { H5S_pnt_node_t *pnt; /* Point information node */ htri_t ret_value = FALSE; /* Return value */ diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h index af76f8b..a140314 100644 --- a/src/H5Sprivate.h +++ b/src/H5Sprivate.h @@ -247,7 +247,7 @@ H5_DLL htri_t H5S_set_extent(H5S_t *space, const hsize_t *size); H5_DLL herr_t H5S_set_extent_real(H5S_t *space, const hsize_t *size); H5_DLL herr_t H5S_set_extent_simple(H5S_t *space, unsigned rank, const hsize_t *dims, const hsize_t *max); H5_DLL H5S_t *H5S_create(H5S_class_t type); -H5_DLL herr_t H5S_get_validated_dataspace(hid_t space_id, const H5S_t **space /*out*/); +H5_DLL herr_t H5S_get_validated_dataspace(hid_t space_id, H5S_t **space /*out*/); H5_DLL H5S_t *H5S_create_simple(unsigned rank, const hsize_t dims[/*rank*/], const hsize_t maxdims[/*rank*/]); H5_DLL herr_t H5S_set_version(H5F_t *f, H5S_t *ds); H5_DLL herr_t H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc); @@ -263,36 +263,35 @@ H5_DLL herr_t H5S_extent_copy(H5S_t *dst, const H5S_t *src); /* Operations on selections */ H5_DLL herr_t H5S_select_deserialize(H5S_t **space, const uint8_t **p); H5_DLL H5S_sel_type H5S_get_select_type(const H5S_t *space); -H5_DLL herr_t H5S_select_iterate(void *buf, const H5T_t *type, const H5S_t *space, - const H5S_sel_iter_op_t *op, void *op_data); -H5_DLL herr_t H5S_select_fill(const void *fill, size_t fill_size, const H5S_t *space, void *buf); -H5_DLL htri_t H5S_select_valid(const H5S_t *space); -H5_DLL hsize_t H5S_get_select_npoints(const H5S_t *space); -H5_DLL herr_t H5S_get_select_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); -H5_DLL herr_t H5S_get_select_offset(const H5S_t *space, hsize_t *offset); -H5_DLL int H5S_get_select_unlim_dim(const H5S_t *space); -H5_DLL herr_t H5S_get_select_num_elem_non_unlim(const H5S_t *space, hsize_t *num_elem_non_unlim); -H5_DLL herr_t H5S_select_offset(H5S_t *space, const hssize_t *offset); -H5_DLL herr_t H5S_select_copy(H5S_t *dst, const H5S_t *src, hbool_t share_selection); -H5_DLL htri_t H5S_select_shape_same(const H5S_t *space1, const H5S_t *space2); -H5_DLL htri_t H5S_select_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end); -H5_DLL herr_t H5S_select_construct_projection(const H5S_t *base_space, H5S_t **new_space_ptr, - unsigned new_space_rank, const void *buf, - void const **adj_buf_ptr, hsize_t element_size); -H5_DLL herr_t H5S_select_release(H5S_t *ds); -H5_DLL hssize_t H5S_select_serial_size(const H5S_t *space); -H5_DLL herr_t H5S_select_serialize(const H5S_t *space, uint8_t **p); -H5_DLL htri_t H5S_select_is_contiguous(const H5S_t *space); -H5_DLL htri_t H5S_select_is_single(const H5S_t *space); -H5_DLL htri_t H5S_select_is_regular(const H5S_t *space); -H5_DLL herr_t H5S_select_adjust_u(H5S_t *space, const hsize_t *offset); -H5_DLL herr_t H5S_select_adjust_s(H5S_t *space, const hssize_t *offset); -H5_DLL herr_t H5S_select_project_scalar(const H5S_t *space, hsize_t *offset); -H5_DLL herr_t H5S_select_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); -H5_DLL herr_t H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, - const H5S_t *src_intersect_space, H5S_t **new_space_ptr, - hbool_t share_space); -H5_DLL herr_t H5S_select_subtract(H5S_t *space, H5S_t *subtract_space); +H5_DLL herr_t H5S_select_iterate(void *buf, const H5T_t *type, H5S_t *space, const H5S_sel_iter_op_t *op, + void *op_data); +H5_DLL herr_t H5S_select_fill(const void *fill, size_t fill_size, H5S_t *space, void *buf); +H5_DLL htri_t H5S_select_valid(const H5S_t *space); +H5_DLL hsize_t H5S_get_select_npoints(const H5S_t *space); +H5_DLL herr_t H5S_get_select_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); +H5_DLL herr_t H5S_get_select_offset(const H5S_t *space, hsize_t *offset); +H5_DLL int H5S_get_select_unlim_dim(const H5S_t *space); +H5_DLL herr_t H5S_get_select_num_elem_non_unlim(const H5S_t *space, hsize_t *num_elem_non_unlim); +H5_DLL herr_t H5S_select_offset(H5S_t *space, const hssize_t *offset); +H5_DLL herr_t H5S_select_copy(H5S_t *dst, const H5S_t *src, hbool_t share_selection); +H5_DLL htri_t H5S_select_shape_same(H5S_t *space1, H5S_t *space2); +H5_DLL htri_t H5S_select_intersect_block(H5S_t *space, const hsize_t *start, const hsize_t *end); +H5_DLL herr_t H5S_select_construct_projection(H5S_t *base_space, H5S_t **new_space_ptr, + unsigned new_space_rank, hsize_t element_size, + ptrdiff_t *buf_adj); +H5_DLL herr_t H5S_select_release(H5S_t *ds); +H5_DLL hssize_t H5S_select_serial_size(H5S_t *space); +H5_DLL herr_t H5S_select_serialize(H5S_t *space, uint8_t **p); +H5_DLL htri_t H5S_select_is_contiguous(const H5S_t *space); +H5_DLL htri_t H5S_select_is_single(const H5S_t *space); +H5_DLL htri_t H5S_select_is_regular(H5S_t *space); +H5_DLL herr_t H5S_select_adjust_u(H5S_t *space, const hsize_t *offset); +H5_DLL herr_t H5S_select_adjust_s(H5S_t *space, const hssize_t *offset); +H5_DLL herr_t H5S_select_project_scalar(const H5S_t *space, hsize_t *offset); +H5_DLL herr_t H5S_select_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); +H5_DLL herr_t H5S_select_project_intersection(H5S_t *src_space, H5S_t *dst_space, H5S_t *src_intersect_space, + H5S_t **new_space_ptr, hbool_t share_space); +H5_DLL herr_t H5S_select_subtract(H5S_t *space, H5S_t *subtract_space); /* Operations on all selections */ H5_DLL herr_t H5S_select_all(H5S_t *space, hbool_t rel_prev); @@ -321,8 +320,7 @@ H5_DLL H5S_t * H5S_hyper_get_unlim_block(const H5S_t *space, hsize_t block_index H5_DLL hsize_t H5S_hyper_get_first_inc_block(const H5S_t *space, hsize_t clip_size, hbool_t *partial); /* Operations on selection iterators */ -H5_DLL herr_t H5S_select_iter_init(H5S_sel_iter_t *iter, const H5S_t *space, size_t elmt_size, - unsigned flags); +H5_DLL herr_t H5S_select_iter_init(H5S_sel_iter_t *iter, H5S_t *space, size_t elmt_size, unsigned flags); H5_DLL herr_t H5S_select_iter_coords(const H5S_sel_iter_t *sel_iter, hsize_t *coords); H5_DLL hsize_t H5S_select_iter_nelmts(const H5S_sel_iter_t *sel_iter); H5_DLL herr_t H5S_select_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); @@ -332,7 +330,7 @@ H5_DLL herr_t H5S_select_iter_release(H5S_sel_iter_t *sel_iter); H5_DLL herr_t H5S_sel_iter_close(H5S_sel_iter_t *sel_iter); #ifdef H5_HAVE_PARALLEL -H5_DLL herr_t H5S_mpio_space_type(const H5S_t *space, size_t elmt_size, +H5_DLL herr_t H5S_mpio_space_type(H5S_t *space, size_t elmt_size, /* out: */ MPI_Datatype *new_type, int *count, hbool_t *is_derived_type, hbool_t do_permute, hsize_t **permute_map, hbool_t *is_permuted); #endif /* H5_HAVE_PARALLEL */ diff --git a/src/H5Sselect.c b/src/H5Sselect.c index e17cea8..1b4afd4 100644 --- a/src/H5Sselect.c +++ b/src/H5Sselect.c @@ -304,7 +304,7 @@ done: *------------------------------------------------------------------------- */ hssize_t -H5S_select_serial_size(const H5S_t *space) +H5S_select_serial_size(H5S_t *space) { hssize_t ret_value = -1; /* Return value */ @@ -343,7 +343,7 @@ H5S_select_serial_size(const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_select_serialize(const H5S_t *space, uint8_t **p) +H5S_select_serialize(H5S_t *space, uint8_t **p) { herr_t ret_value = SUCCEED; /* Return value */ @@ -880,7 +880,7 @@ H5S_select_is_single(const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ htri_t -H5S_select_is_regular(const H5S_t *space) +H5S_select_is_regular(H5S_t *space) { herr_t ret_value = FAIL; /* Return value */ @@ -1116,7 +1116,7 @@ H5S_select_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset) in the dataspace's selection. --------------------------------------------------------------------------*/ herr_t -H5S_select_iter_init(H5S_sel_iter_t *sel_iter, const H5S_t *space, size_t elmt_size, unsigned flags) +H5S_select_iter_init(H5S_sel_iter_t *sel_iter, H5S_t *space, size_t elmt_size, unsigned flags) { herr_t ret_value = FAIL; /* Return value */ @@ -1497,8 +1497,7 @@ H5S_select_iter_release(H5S_sel_iter_t *sel_iter) the selection is not modified. --------------------------------------------------------------------------*/ herr_t -H5S_select_iterate(void *buf, const H5T_t *type, const H5S_t *space, const H5S_sel_iter_op_t *op, - void *op_data) +H5S_select_iterate(void *buf, const H5T_t *type, H5S_t *space, const H5S_sel_iter_op_t *op, void *op_data) { H5S_sel_iter_t *iter = NULL; /* Selection iteration info */ hbool_t iter_init = FALSE; /* Selection iteration info has been initialized */ @@ -1739,7 +1738,7 @@ H5S_get_select_type(const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ htri_t -H5S_select_shape_same(const H5S_t *space1, const H5S_t *space2) +H5S_select_shape_same(H5S_t *space1, H5S_t *space2) { H5S_sel_iter_t *iter_a = NULL; /* Selection a iteration info */ H5S_sel_iter_t *iter_b = NULL; /* Selection b iteration info */ @@ -1760,8 +1759,8 @@ H5S_select_shape_same(const H5S_t *space1, const H5S_t *space2) /* Check special cases if both dataspaces aren't scalar */ /* (If only one is, the number of selected points check is sufficient) */ if (space1->extent.rank > 0 && space2->extent.rank > 0) { - const H5S_t *space_a; /* Dataspace with larger rank */ - const H5S_t *space_b; /* Dataspace with smaller rank */ + H5S_t * space_a; /* Dataspace with larger rank */ + H5S_t * space_b; /* Dataspace with smaller rank */ unsigned space_a_rank; /* Number of dimensions of dataspace A */ unsigned space_b_rank; /* Number of dimensions of dataspace B */ int space_a_dim; /* Current dimension in dataspace A */ @@ -2063,7 +2062,7 @@ done: don't call it directly, use the appropriate macro defined in H5Sprivate.h. --------------------------------------------------------------------------*/ htri_t -H5S_select_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end) +H5S_select_intersect_block(H5S_t *space, const hsize_t *start, const hsize_t *end) { htri_t ret_value = TRUE; /* Return value */ @@ -2171,27 +2170,24 @@ done: Note that if m > n, it is possible that the starting point in the buffer associated with the memory dataspace will have to be - adjusted to match the projected dataspace. If the buf parameter - is not NULL, the function must return an adjusted buffer base - address in *adj_buf_ptr. + adjusted to match the projected dataspace. In this case, the amount + of adjustment to be applied to the buffer will be returned via the + buf_adj parameter, if supplied. USAGE htri_t H5S_select_construct_projection(base_space, new_space_ptr, new_space_rank, - buf, - adj_buf_ptr) + element_size, + buf_adj) const H5S_t *base_space; IN: Ptr to Dataspace to project H5S_t ** new_space_ptr; OUT: Ptr to location in which to return the address of the projected space int new_space_rank; IN: Rank of the projected space. - const void * buf; IN: Base address of the buffer - associated with the base space. - May be NULL. - void ** adj_buf_ptr; OUT: If buf != NULL, store the base - address of the section of buf - that is described by *new_space_ptr - in *adj_buf_ptr. + hsize_t element_size; IN: size of each element in the selection + ptrdiff_t buf_adj; OUT: amount of adjustment to be applied + to buffer associated with memory + dataspace RETURNS Non-negative on success/Negative on failure. @@ -2201,9 +2197,6 @@ done: projection of the supplied dataspace and associated selection into the specified rank. Return it in *new_space_ptr. - If buf is supplied, computes the base address of the projected - selection in buf, and stores the base address in *adj_buf_ptr. - GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS The selection in the supplied base_space has thickness 1 in all @@ -2214,8 +2207,8 @@ done: REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_select_construct_projection(const H5S_t *base_space, H5S_t **new_space_ptr, unsigned new_space_rank, - const void *buf, void const **adj_buf_ptr, hsize_t element_size) +H5S_select_construct_projection(H5S_t *base_space, H5S_t **new_space_ptr, unsigned new_space_rank, + hsize_t element_size, ptrdiff_t *buf_adj) { H5S_t * new_space = NULL; /* New dataspace constructed */ hsize_t base_space_dims[H5S_MAX_RANK]; /* Current dimensions of base dataspace */ @@ -2234,7 +2227,6 @@ H5S_select_construct_projection(const H5S_t *base_space, H5S_t **new_space_ptr, HDassert(new_space_ptr != NULL); HDassert((new_space_rank != 0) || (H5S_GET_SELECT_NPOINTS(base_space) <= 1)); HDassert(new_space_rank <= H5S_MAX_RANK); - HDassert((buf == NULL) || (adj_buf_ptr != NULL)); HDassert(element_size > 0); /* Get the extent info for the base dataspace */ @@ -2397,26 +2389,15 @@ H5S_select_construct_projection(const H5S_t *base_space, H5S_t **new_space_ptr, /* load the address of the new space into *new_space_ptr */ *new_space_ptr = new_space; - /* now adjust the buffer if required */ - if (buf != NULL) { + /* return the buffer adjustment amount if required */ + if (buf_adj != NULL) { if (new_space_rank < base_space_rank) { - /* a bit of pointer magic here: - * - * Since we can't do pointer arithmetic on void pointers, we first - * cast buf to a pointer to byte -- i.e. uint8_t. - * - * We then multiply the projected space element offset we - * calculated earlier by the supplied element size, add this - * value to the type cast buf pointer, cast the result back - * to a pointer to void, and assign the result to *adj_buf_ptr. - */ - *adj_buf_ptr = (const void *)(((const uint8_t *)buf) + - ((size_t)(projected_space_element_offset * element_size))); - } /* end if */ + *buf_adj = (ptrdiff_t)(projected_space_element_offset * element_size); + } else /* No adjustment necessary */ - *adj_buf_ptr = buf; - } /* end if */ + *buf_adj = 0; + } done: /* Cleanup on error */ @@ -2452,7 +2433,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_select_fill(const void *fill, size_t fill_size, const H5S_t *space, void *_buf) +H5S_select_fill(const void *fill, size_t fill_size, H5S_t *space, void *_buf) { H5S_sel_iter_t *iter = NULL; /* Selection iteration info */ hbool_t iter_init = FALSE; /* Selection iteration info has been initialized */ @@ -2568,9 +2549,8 @@ to share structures inside dst_space with proj_space REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, - const H5S_t *src_intersect_space, H5S_t **new_space_ptr, - hbool_t share_selection) +H5S_select_project_intersection(H5S_t *src_space, H5S_t *dst_space, H5S_t *src_intersect_space, + H5S_t **new_space_ptr, hbool_t share_selection) { H5S_t * new_space = NULL; /* New dataspace constructed */ H5S_t * tmp_src_intersect_space = NULL; /* Temporary SIS converted from points->hyperslabs */ @@ -5354,7 +5354,7 @@ done: *------------------------------------------------------------------------- */ H5G_name_t * -H5T_nameof(const H5T_t *dt) +H5T_nameof(H5T_t *dt) { H5G_name_t *ret_value = NULL; diff --git a/src/H5Tconv.c b/src/H5Tconv.c index ae942e6..1e9b9bc 100644 --- a/src/H5Tconv.c +++ b/src/H5Tconv.c @@ -3251,9 +3251,10 @@ H5T__conv_vlen(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, si /* If we're down to the last few elements, just wrap up */ /* with a "real" reverse copy */ if (safe < 2) { - s = (uint8_t *)buf + (nelmts - 1) * (size_t)s_stride; - d = (uint8_t *)buf + (nelmts - 1) * (size_t)d_stride; - b = (uint8_t *)bkg + (nelmts - 1) * (size_t)b_stride; + s = (uint8_t *)buf + (nelmts - 1) * (size_t)s_stride; + d = (uint8_t *)buf + (nelmts - 1) * (size_t)d_stride; + if (bkg) + b = (uint8_t *)bkg + (nelmts - 1) * (size_t)b_stride; s_stride = -s_stride; d_stride = -d_stride; b_stride = -b_stride; @@ -3263,7 +3264,8 @@ H5T__conv_vlen(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, si else { s = (uint8_t *)buf + (nelmts - safe) * (size_t)s_stride; d = (uint8_t *)buf + (nelmts - safe) * (size_t)d_stride; - b = (uint8_t *)bkg + (nelmts - safe) * (size_t)b_stride; + if (bkg) + b = (uint8_t *)bkg + (nelmts - safe) * (size_t)b_stride; } /* end else */ } /* end if */ else { @@ -3390,7 +3392,7 @@ H5T__conv_vlen(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, si /* TMP_P is reset each time in the loop because DST_BASE_SIZE may include some * data in addition to VL info. - SLU */ for (u = seq_len; u < bg_seq_len; u++) { - tmp = (uint8_t *)tmp_buf + u * dst_base_size; + tmp = (const uint8_t *)tmp_buf + u * dst_base_size; UINT32DECODE(tmp, parent_seq_len); if (parent_seq_len > 0) { H5F_addr_decode(dst->shared->u.vlen.f, &tmp, &(parent_hobjid.addr)); @@ -3407,7 +3409,9 @@ H5T__conv_vlen(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, si /* Advance pointers */ s += s_stride; d += d_stride; - b += b_stride; + + if (b) + b += b_stride; } /* end for */ /* Decrement number of elements left to convert */ diff --git a/src/H5Tprivate.h b/src/H5Tprivate.h index aae0774..aadead5 100644 --- a/src/H5Tprivate.h +++ b/src/H5Tprivate.h @@ -115,7 +115,7 @@ H5_DLL herr_t H5T_encode(H5T_t *obj, unsigned char *buf, size_t *nalloc); H5_DLL H5T_t * H5T_decode(size_t buf_size, const unsigned char *buf); H5_DLL herr_t H5T_debug(const H5T_t *dt, FILE *stream); H5_DLL struct H5O_loc_t *H5T_oloc(H5T_t *dt); -H5_DLL H5G_name_t *H5T_nameof(const H5T_t *dt); +H5_DLL H5G_name_t *H5T_nameof(H5T_t *dt); H5_DLL htri_t H5T_is_immutable(const H5T_t *dt); H5_DLL htri_t H5T_is_named(const H5T_t *dt); H5_DLL herr_t H5T_convert_committed_datatype(H5T_t *dt, H5F_t *f); diff --git a/src/H5trace.c b/src/H5trace.c index 1565a86..6eff40c 100644 --- a/src/H5trace.c +++ b/src/H5trace.c @@ -117,8 +117,8 @@ H5_trace(const double *returning, const char *func, const char *type, ...) void * vp = NULL; FILE * out = H5_debug_g.trace; static hbool_t is_first_invocation = TRUE; - H5_timer_t function_timer = {{0}, {0}, {0}, FALSE}; - H5_timevals_t function_times; + H5_timer_t function_timer; + H5_timevals_t function_times = {0.0, 0.0, 0.0}; static H5_timer_t running_timer; H5_timevals_t running_times; static int current_depth = 0; @@ -130,6 +130,10 @@ H5_trace(const double *returning, const char *func, const char *type, ...) return 0.0F; /*tracing is off*/ HDva_start(ap, type); + /* Initialize the timer for this function */ + if (H5_debug_g.ttimes) + H5_timer_init(&function_timer); + if (H5_debug_g.ttop) { if (returning) { if (current_depth > 1) { @@ -153,11 +157,10 @@ H5_trace(const double *returning, const char *func, const char *type, ...) H5_timer_init(&running_timer); H5_timer_start(&running_timer); } /* end if */ - if (H5_debug_g.ttimes) { - /* start the timer for this function */ - H5_timer_init(&function_timer); + + /* Start the timer for this function */ + if (H5_debug_g.ttimes) H5_timer_start(&function_timer); - } /* end if */ /* Print the first part of the line. This is the indication of the * nesting depth followed by the function name and either start of |