Merge branch 'hdf5_1_10_merge' of https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into hdf5_1_10_merge

3 files changed, 92 insertions, 6 deletions

diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index bf7fb07..d10870d 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -991,3 +991,51 @@ if (HDF5_EXPORTED_TARGETS)
       INCLUDES DESTINATION include
   )
 endif ()
+
+#-----------------------------------------------------------------------------
+# Create pkgconfig files
+#-----------------------------------------------------------------------------
+set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
+set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
+set (_PKG_CONFIG_LIBNAME "${HDF5_LIB_CORENAME}")
+set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
+
+foreach (libs ${LINK_LIBS} ${LINK_COMP_LIBS})
+  set (_PKG_CONFIG_LIBS_PRIVATE "${_PKG_CONFIG_LIBS_PRIVATE} -l${libs}")
+endforeach ()
+
+set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_LIB_CORENAME}")
+if (BUILD_SHARED_LIBS)
+  set (_PKG_CONFIG_SH_LIBS "${_PKG_CONFIG_SH_LIBS} -l${HDF5_LIB_CORENAME}")
+endif ()
+
+set (_PKG_CONFIG_REQUIRES)
+set (_PKG_CONFIG_REQUIRES_PRIVATE)
+
+configure_file (
+    ${HDF_RESOURCES_DIR}/libhdf5.pc.in
+    ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc
+    @ONLY
+)
+install (
+    FILES ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc
+    DESTINATION ${HDF5_INSTALL_LIB_DIR}/pkgconfig
+    COMPONENT libraries
+)
+
+if (NOT WIN32)
+  set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+  configure_file (
+      ${HDF_RESOURCES_DIR}/libh5cc.in
+      ${HDF5_BINARY_DIR}/CMakeFiles/h5cc
+      @ONLY
+  )
+  install (
+      FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5cc
+      DESTINATION ${HDF5_INSTALL_BIN_DIR}
+      PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+      COMPONENT libraries
+  )
+endif ()
diff --git a/src/H5Fquery.c b/src/H5Fquery.c
index 6f4febc..f7e222e 100644
--- a/src/H5Fquery.c
+++ b/src/H5Fquery.c
@@ -740,12 +740,12 @@ H5F_gc_ref(const H5F_t *f)
 
 
 /*-------------------------------------------------------------------------
- * Function:    H5F_get_fc_degree
+ * Function: H5F_get_fc_degree
  *
- * Purpose:     Retrieve the 'file close degree' for the file.
+ * Purpose:  Retrieve the 'file close degree' for the file.
  *
- * Return:      Success:    Non-negative, the 'file close degree'
- *              Failure:    (can't happen)
+ * Return:   Success:    Non-negative, the 'file close degree'
+ *           Failure:    (can't happen)
  *-------------------------------------------------------------------------
  */
 H5F_close_degree_t
diff --git a/src/H5Olayout.c b/src/H5Olayout.c
index 0994ef8..2c4c4ce 100644
--- a/src/H5Olayout.c
+++ b/src/H5Olayout.c
@@ -47,6 +47,8 @@ static herr_t H5O__layout_reset(void *_mesg);
 static herr_t H5O__layout_free(void *_mesg);
 static herr_t H5O__layout_delete(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh,
     void *_mesg);
+static herr_t H5O__layout_pre_copy_file(H5F_t *file_src, const void *mesg_src,
+    hbool_t *deleted, const H5O_copy_t *cpy_info, void *udata);
 static void *H5O__layout_copy_file(H5F_t *file_src, void *mesg_src,
     H5F_t *file_dst, hbool_t *recompute_size, unsigned *mesg_flags,
     H5O_copy_t *cpy_info, void *udata, hid_t dxpl_id);
@@ -69,7 +71,7 @@ const H5O_msg_class_t H5O_MSG_LAYOUT[1] = {{
     NULL,                       /* link method                          */
     NULL,                       /* set share method                     */
     NULL,                       /* can share method                     */
-    NULL,                       /* pre copy native value to file        */
+    H5O__layout_pre_copy_file,  /* pre copy native value to file        */
     H5O__layout_copy_file,      /* copy native value to file            */
     NULL,                       /* post copy native value to file       */
     NULL,                       /* get creation index                   */
@@ -99,7 +101,7 @@ H5FL_DEFINE(H5O_layout_t);
  */
 static void *
 H5O__layout_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh,
-    unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, 
+    unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags,
     size_t H5_ATTR_UNUSED p_size, const uint8_t *p)
 {
     H5O_layout_t           *mesg = NULL;
@@ -1057,6 +1059,42 @@ done:
 
 
 /*-------------------------------------------------------------------------
+ * Function:    H5O__layout_pre_copy_file
+ *
+ * Purpose:     Perform any necessary actions before copying message between
+ *              files.
+ *
+ * Return:      Success:        Non-negative
+ *              Failure:        Negative
+ *
+ * Programmer:  Vailin Choi; Dec 2017
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5O__layout_pre_copy_file(H5F_t H5_ATTR_UNUSED *file_src, const void *mesg_src,
+    hbool_t H5_ATTR_UNUSED *deleted, const H5O_copy_t *cpy_info, void H5_ATTR_UNUSED *udata)
+{
+    const H5O_layout_t *layout_src = (const H5O_layout_t *)mesg_src;  /* Source layout */
+    herr_t ret_value = SUCCEED;   /* Return value */
+
+    FUNC_ENTER_NOAPI_NOINIT
+
+    /* check args */
+    HDassert(cpy_info);
+    HDassert(cpy_info->file_dst);
+
+    /* Check to ensure that the version of the message to be copied does not exceed
+       the message version allowed by the destination file's high bound */
+    if(layout_src->version > H5O_layout_ver_bounds[H5F_HIGH_BOUND(cpy_info->file_dst)])
+        HGOTO_ERROR(H5E_OHDR, H5E_BADRANGE, FAIL, "layout message version out of bounds")
+
+done:
+    FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5O__layout_pre_copy_file() */
+
+
+/*-------------------------------------------------------------------------
  * Function:    H5O__layout_copy_file
  *
  * Purpose:     Copies a message from _MESG to _DEST in file