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| author | Larry Knox <lrknox@hdfgroup.org> | 2019-02-28 21:24:02 (GMT) |
|---|---|---|
| committer | Larry Knox <lrknox@hdfgroup.org> | 2019-02-28 21:24:02 (GMT) |
| commit | 646fc294078f560fc9bef784cb1c4e27cdc51f5b (patch) | |
| tree | 21502062cfc4ab6410f6d81de11e28c1523e85bd /src | |
| parent | 5eef94f83f4875b64ffe7f9cea05d965bddbd802 (diff) | |
| parent | 6819c11508b0610f222fe3bfe8a19f637bf4319c (diff) | |
| download | hdf5-646fc294078f560fc9bef784cb1c4e27cdc51f5b.zip hdf5-646fc294078f560fc9bef784cb1c4e27cdc51f5b.tar.gz hdf5-646fc294078f560fc9bef784cb1c4e27cdc51f5b.tar.bz2 | |
Merge pull request #1590 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:1.10/master to 1.10/masterhdf5-1_10_5
* commit '6819c11508b0610f222fe3bfe8a19f637bf4319c': (154 commits)
CMake needs a tar.gz examples file for windows, too.
Correct file permissions on README.txt.
Address merge anomalies and incorrect file permissions.
Update release date in README.txt and RELEASE.txt.
Revisions to Platforms tested.
Updated LT_VERS_AGE in config/lt_vers.am due to reinstatement of previously removed symbols, then ran autogen.sh to propagate so number changes and H5E_LOGFAIL_g addition to files checked in on release branch.
Updated H5err.txt to replace a global variable that was removed during the metadata cache logging changes (to maintain binary compatibility).
HDFFV-10552,10686 restore H5O_*1 functions
Minor fix in h5str_sprintf for NULL region references
Add new files to MANIFEST.
Update so version numbers. fix 2 typos.
Update RELEASE.txt for TRILABS-34 and remove unused sections.
Add script for building HDF5 with CMake on HPC machines that use sbatch. Add README file for inclusion in CMake-hdf5-<version>.tar.gz file. Add updated README_HPC file with cross compile instructions.
set version to 1.10.5-pre1. Change default build mode to production.
Merge pull request #1560 in HDFFV/hdf5 from hdf5-1-10-documentation-only to hdf5_1_10_5
Update HISTORY-1_10.txt and RELEASE.txt files.
Modify RELEASE.txt in response to PR comments
Check in files generated by autogen.sh for hdf5_1_10_5 release branch.
Check in files generated by autogen.sh for hdf5_1_10_5 release branch. 2019/02/16.
Code improvement
...
Diffstat (limited to 'src')
112 files changed, 6529 insertions, 5351 deletions
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt index 3370c99..01434ba 100644 --- a/src/CMakeLists.txt +++ b/src/CMakeLists.txt @@ -32,7 +32,6 @@ set (H5A_SOURCES ) set (H5A_HDRS - ${HDF5_SRC_DIR}/H5Apkg.h ${HDF5_SRC_DIR}/H5Apublic.h ) IDE_GENERATED_PROPERTIES ("H5A" "${H5A_HDRS}" "${H5A_SOURCES}" ) @@ -40,13 +39,11 @@ IDE_GENERATED_PROPERTIES ("H5A" "${H5A_HDRS}" "${H5A_SOURCES}" ) set (H5AC_SOURCES ${HDF5_SRC_DIR}/H5AC.c ${HDF5_SRC_DIR}/H5ACdbg.c - ${HDF5_SRC_DIR}/H5AClog.c ${HDF5_SRC_DIR}/H5ACmpio.c ${HDF5_SRC_DIR}/H5ACproxy_entry.c ) set (H5AC_HDRS - ${HDF5_SRC_DIR}/H5ACpkg.h ${HDF5_SRC_DIR}/H5ACpublic.h ) IDE_GENERATED_PROPERTIES ("H5AC" "${H5AC_HDRS}" "${H5AC_SOURCES}" ) @@ -57,8 +54,6 @@ set (H5B_SOURCES ${HDF5_SRC_DIR}/H5Bdbg.c ) set (H5B_HDRS - ${HDF5_SRC_DIR}/H5Bpkg.h - ${HDF5_SRC_DIR}/H5Bpublic.h ) IDE_GENERATED_PROPERTIES ("H5B" "${H5B_HDRS}" "${H5B_SOURCES}" ) @@ -75,8 +70,6 @@ set (H5B2_SOURCES ${HDF5_SRC_DIR}/H5B2test.c ) set (H5B2_HDRS - ${HDF5_SRC_DIR}/H5B2pkg.h - ${HDF5_SRC_DIR}/H5B2public.h ) IDE_GENERATED_PROPERTIES ("H5B2" "${H5B2_HDRS}" "${H5B2_SOURCES}" ) @@ -87,6 +80,8 @@ set (H5C_SOURCES ${HDF5_SRC_DIR}/H5Cepoch.c ${HDF5_SRC_DIR}/H5Cimage.c ${HDF5_SRC_DIR}/H5Clog.c + ${HDF5_SRC_DIR}/H5Clog_json.c + ${HDF5_SRC_DIR}/H5Clog_trace.c ${HDF5_SRC_DIR}/H5Cmpio.c ${HDF5_SRC_DIR}/H5Cprefetched.c ${HDF5_SRC_DIR}/H5Cquery.c @@ -94,7 +89,6 @@ set (H5C_SOURCES ${HDF5_SRC_DIR}/H5Ctest.c ) set (H5C_HDRS - ${HDF5_SRC_DIR}/H5Cpkg.h ${HDF5_SRC_DIR}/H5Cpublic.h ) IDE_GENERATED_PROPERTIES ("H5C" "${H5C_HDRS}" "${H5C_SOURCES}" ) @@ -143,7 +137,6 @@ set (H5D_SOURCES ) set (H5D_HDRS - ${HDF5_SRC_DIR}/H5Dpkg.h ${HDF5_SRC_DIR}/H5Dpublic.h ) IDE_GENERATED_PROPERTIES ("H5D" "${H5D_HDRS}" "${H5D_SOURCES}" ) @@ -155,12 +148,8 @@ set (H5E_SOURCES ) set (H5E_HDRS - #${HDF5_SRC_DIR}/H5Edefin.h - #${HDF5_SRC_DIR}/H5Einit.h - ${HDF5_SRC_DIR}/H5Epkg.h - #${HDF5_SRC_DIR}/H5Epubgen.h + ${HDF5_SRC_DIR}/H5Epubgen.h ${HDF5_SRC_DIR}/H5Epublic.h - #${HDF5_SRC_DIR}/H5Eterm.h ) IDE_GENERATED_PROPERTIES ("H5E" "${H5E_HDRS}" "${H5E_SOURCES}" ) @@ -179,7 +168,6 @@ set (H5EA_SOURCES ${HDF5_SRC_DIR}/H5EAtest.c ) set (H5EA_HDRS - ${HDF5_SRC_DIR}/H5EApkg.h ) IDE_GENERATED_PROPERTIES ("H5EA" "${H5EA_HDRS}" "${H5EA_SOURCES}" ) @@ -205,7 +193,6 @@ set (H5F_SOURCES ) set (H5F_HDRS - ${HDF5_SRC_DIR}/H5Fpkg.h ${HDF5_SRC_DIR}/H5Fpublic.h ) IDE_GENERATED_PROPERTIES ("H5F" "${H5F_HDRS}" "${H5F_SOURCES}" ) @@ -223,7 +210,6 @@ set (H5FA_SOURCES ${HDF5_SRC_DIR}/H5FAtest.c ) set (H5FA_HDRS - ${HDF5_SRC_DIR}/H5FApkg.h ) IDE_GENERATED_PROPERTIES ("H5FA" "${H5FA_HDRS}" "${H5FA_SOURCES}" ) @@ -253,7 +239,6 @@ set (H5FD_HDRS ${HDF5_SRC_DIR}/H5FDmpi.h ${HDF5_SRC_DIR}/H5FDmpio.h ${HDF5_SRC_DIR}/H5FDmulti.h - ${HDF5_SRC_DIR}/H5FDpkg.h ${HDF5_SRC_DIR}/H5FDpublic.h ${HDF5_SRC_DIR}/H5FDsec2.h ${HDF5_SRC_DIR}/H5FDstdio.h @@ -289,8 +274,6 @@ set (H5FS_SOURCES ) set (H5FS_HDRS - ${HDF5_SRC_DIR}/H5FSpkg.h - ${HDF5_SRC_DIR}/H5FSpublic.h ) IDE_GENERATED_PROPERTIES ("H5FS" "${H5FS_HDRS}" "${H5FS_SOURCES}" ) @@ -316,7 +299,6 @@ set (H5G_SOURCES ) set (H5G_HDRS - ${HDF5_SRC_DIR}/H5Gpkg.h ${HDF5_SRC_DIR}/H5Gpublic.h ) IDE_GENERATED_PROPERTIES ("H5G" "${H5G_HDRS}" "${H5G_SOURCES}" ) @@ -341,8 +323,6 @@ set (H5HF_SOURCES ) set (H5HF_HDRS - ${HDF5_SRC_DIR}/H5HFpkg.h - ${HDF5_SRC_DIR}/H5HFpublic.h ) IDE_GENERATED_PROPERTIES ("H5HF" "${H5HF_HDRS}" "${H5HF_SOURCES}" ) @@ -354,8 +334,6 @@ set (H5HG_SOURCES ) set (H5HG_HDRS - ${HDF5_SRC_DIR}/H5HGpkg.h - ${HDF5_SRC_DIR}/H5HGpublic.h ) IDE_GENERATED_PROPERTIES ("H5HG" "${H5HG_HDRS}" "${H5HG_SOURCES}" ) @@ -369,8 +347,6 @@ set (H5HL_SOURCES ) set (H5HL_HDRS - ${HDF5_SRC_DIR}/H5HLpkg.h - ${HDF5_SRC_DIR}/H5HLpublic.h ) IDE_GENERATED_PROPERTIES ("H5HL" "${H5HL_HDRS}" "${H5HL_SOURCES}" ) @@ -388,7 +364,6 @@ set (H5I_SOURCES ${HDF5_SRC_DIR}/H5Itest.c ) set (H5I_HDRS - ${HDF5_SRC_DIR}/H5Ipkg.h ${HDF5_SRC_DIR}/H5Ipublic.h ) IDE_GENERATED_PROPERTIES ("H5I" "${H5I_HDRS}" "${H5I_SOURCES}" ) @@ -399,7 +374,6 @@ set (H5L_SOURCES ${HDF5_SRC_DIR}/H5Lexternal.c ) set (H5L_HDRS - ${HDF5_SRC_DIR}/H5Lpkg.h ${HDF5_SRC_DIR}/H5Lpublic.h ) IDE_GENERATED_PROPERTIES ("H5L" "${H5L_HDRS}" "${H5L_SOURCES}" ) @@ -432,7 +406,6 @@ set (H5MP_SOURCES ) set (H5MP_HDRS - ${HDF5_SRC_DIR}/H5MPpkg.h ) IDE_GENERATED_PROPERTIES ("H5MP" "${H5MP_HDRS}" "${H5MP_SOURCES}" ) @@ -477,9 +450,7 @@ set (H5O_SOURCES ) set (H5O_HDRS - ${HDF5_SRC_DIR}/H5Opkg.h ${HDF5_SRC_DIR}/H5Opublic.h - ${HDF5_SRC_DIR}/H5Oshared.h ) IDE_GENERATED_PROPERTIES ("H5O" "${H5O_HDRS}" "${H5O_SOURCES}" ) @@ -505,7 +476,6 @@ set (H5P_SOURCES ) set (H5P_HDRS - ${HDF5_SRC_DIR}/H5Ppkg.h ${HDF5_SRC_DIR}/H5Ppublic.h ) IDE_GENERATED_PROPERTIES ("H5P" "${H5P_HDRS}" "${H5P_SOURCES}" ) @@ -515,7 +485,6 @@ set (H5PB_SOURCES ) set (H5PB_HDRS - ${HDF5_SRC_DIR}/H5PBpkg.h ) IDE_GENERATED_PROPERTIES ("H5PB" "${H5PB_HDRS}" "${H5PB_SOURCES}" ) @@ -528,7 +497,6 @@ set (H5PL_SOURCES set (H5PL_HDRS ${HDF5_SRC_DIR}/H5PLextern.h - ${HDF5_SRC_DIR}/H5PLpkg.h ${HDF5_SRC_DIR}/H5PLpublic.h ) IDE_GENERATED_PROPERTIES ("H5PL" "${H5PL_HDRS}" "${H5PL_SOURCES}" ) @@ -540,7 +508,6 @@ set (H5R_SOURCES ${HDF5_SRC_DIR}/H5Rint.c ) set (H5R_HDRS - ${HDF5_SRC_DIR}/H5Rpkg.h ${HDF5_SRC_DIR}/H5Rpublic.h ) IDE_GENERATED_PROPERTIES ("H5R" "${H5R_HDRS}" "${H5R_SOURCES}" ) @@ -567,7 +534,6 @@ set (H5S_SOURCES ) set (H5S_HDRS - ${HDF5_SRC_DIR}/H5Spkg.h ${HDF5_SRC_DIR}/H5Spublic.h ) IDE_GENERATED_PROPERTIES ("H5S" "${H5S_HDRS}" "${H5S_SOURCES}" ) @@ -590,7 +556,6 @@ set (H5SM_SOURCES ) set (H5SM_HDRS - ${HDF5_SRC_DIR}/H5SMpkg.h ) IDE_GENERATED_PROPERTIES ("H5SM" "${H5SM_HDRS}" "${H5SM_SOURCES}" ) @@ -630,7 +595,6 @@ set (H5T_SOURCES ) set (H5T_HDRS - ${HDF5_SRC_DIR}/H5Tpkg.h ${HDF5_SRC_DIR}/H5Tpublic.h ) IDE_GENERATED_PROPERTIES ("H5T" "${H5T_HDRS}" "${H5T_SOURCES}" ) @@ -685,7 +649,6 @@ endif () set (H5Z_HDRS - ${HDF5_SRC_DIR}/H5Zpkg.h ${HDF5_SRC_DIR}/H5Zpublic.h ) IDE_GENERATED_PROPERTIES ("H5Z" "${H5Z_HDRS}" "${H5Z_SOURCES}" ) @@ -772,49 +735,124 @@ set (H5_PUBLIC_HEADERS set (H5_PRIVATE_HEADERS ${HDF5_SRC_DIR}/H5private.h + + ${HDF5_SRC_DIR}/H5Apkg.h ${HDF5_SRC_DIR}/H5Aprivate.h + + ${HDF5_SRC_DIR}/H5ACpkg.h ${HDF5_SRC_DIR}/H5ACprivate.h - ${HDF5_SRC_DIR}/H5B2private.h + + ${HDF5_SRC_DIR}/H5Bpkg.h ${HDF5_SRC_DIR}/H5Bprivate.h + + ${HDF5_SRC_DIR}/H5B2pkg.h + ${HDF5_SRC_DIR}/H5B2private.h + + ${HDF5_SRC_DIR}/H5Clog.h + ${HDF5_SRC_DIR}/H5Cpkg.h ${HDF5_SRC_DIR}/H5Cprivate.h + ${HDF5_SRC_DIR}/H5CSprivate.h + ${HDF5_SRC_DIR}/H5CXprivate.h + + ${HDF5_SRC_DIR}/H5Dpkg.h ${HDF5_SRC_DIR}/H5Dprivate.h + + ${HDF5_SRC_DIR}/H5Edefin.h + ${HDF5_SRC_DIR}/H5Einit.h + ${HDF5_SRC_DIR}/H5Epkg.h ${HDF5_SRC_DIR}/H5Eprivate.h + ${HDF5_SRC_DIR}/H5Eterm.h + + ${HDF5_SRC_DIR}/H5EApkg.h ${HDF5_SRC_DIR}/H5EAprivate.h + + ${HDF5_SRC_DIR}/H5Fpkg.h + ${HDF5_SRC_DIR}/H5Fprivate.h + + ${HDF5_SRC_DIR}/H5FApkg.h ${HDF5_SRC_DIR}/H5FAprivate.h + + ${HDF5_SRC_DIR}/H5FDpkg.h ${HDF5_SRC_DIR}/H5FDprivate.h - ${HDF5_SRC_DIR}/H5Fprivate.h + ${HDF5_SRC_DIR}/H5FLprivate.h + ${HDF5_SRC_DIR}/H5FOprivate.h - ${HDF5_SRC_DIR}/H5MFprivate.h - ${HDF5_SRC_DIR}/H5MMprivate.h - ${HDF5_SRC_DIR}/H5Cprivate.h + + ${HDF5_SRC_DIR}/H5FSpkg.h ${HDF5_SRC_DIR}/H5FSprivate.h + + ${HDF5_SRC_DIR}/H5Gpkg.h ${HDF5_SRC_DIR}/H5Gprivate.h + + ${HDF5_SRC_DIR}/H5HFpkg.h ${HDF5_SRC_DIR}/H5HFprivate.h + + ${HDF5_SRC_DIR}/H5HGpkg.h ${HDF5_SRC_DIR}/H5HGprivate.h + + ${HDF5_SRC_DIR}/H5HLpkg.h ${HDF5_SRC_DIR}/H5HLprivate.h + ${HDF5_SRC_DIR}/H5HPprivate.h + + ${HDF5_SRC_DIR}/H5Ipkg.h ${HDF5_SRC_DIR}/H5Iprivate.h + + ${HDF5_SRC_DIR}/H5Lpkg.h ${HDF5_SRC_DIR}/H5Lprivate.h + + ${HDF5_SRC_DIR}/H5MFprivate.h + + ${HDF5_SRC_DIR}/H5MMprivate.h + + ${HDF5_SRC_DIR}/H5MPpkg.h ${HDF5_SRC_DIR}/H5MPprivate.h + + ${HDF5_SRC_DIR}/H5Opkg.h ${HDF5_SRC_DIR}/H5Oprivate.h + ${HDF5_SRC_DIR}/H5Oshared.h + + ${HDF5_SRC_DIR}/H5Ppkg.h ${HDF5_SRC_DIR}/H5Pprivate.h + ${HDF5_SRC_DIR}/H5PBprivate.h + ${HDF5_SRC_DIR}/H5PBpkg.h + + ${HDF5_SRC_DIR}/H5PLpkg.h ${HDF5_SRC_DIR}/H5PLprivate.h - ${HDF5_SRC_DIR}/H5UCprivate.h + + ${HDF5_SRC_DIR}/H5Rpkg.h ${HDF5_SRC_DIR}/H5Rprivate.h + ${HDF5_SRC_DIR}/H5RSprivate.h + + ${HDF5_SRC_DIR}/H5Spkg.h + ${HDF5_SRC_DIR}/H5Sprivate.h + ${HDF5_SRC_DIR}/H5SLprivate.h + + ${HDF5_SRC_DIR}/H5SMpkg.h ${HDF5_SRC_DIR}/H5SMprivate.h - ${HDF5_SRC_DIR}/H5Sprivate.h + ${HDF5_SRC_DIR}/H5STprivate.h + + ${HDF5_SRC_DIR}/H5Tpkg.h ${HDF5_SRC_DIR}/H5Tprivate.h + ${HDF5_SRC_DIR}/H5TSprivate.h + + ${HDF5_SRC_DIR}/H5UCprivate.h + ${HDF5_SRC_DIR}/H5VMprivate.h + ${HDF5_SRC_DIR}/H5WBprivate.h + + ${HDF5_SRC_DIR}/H5Zpkg.h ${HDF5_SRC_DIR}/H5Zprivate.h + ${HDF5_SRC_DIR}/H5win32defs.h ) @@ -827,6 +865,12 @@ set (H5_GENERATED_HEADERS ${HDF5_SRC_DIR}/H5overflow.h ) +set (H5_PUBLIC_GENERATED_HEADERS + ${HDF5_SRC_DIR}/H5Epubgen.h + ${HDF5_SRC_DIR}/H5version.h + ${HDF5_SRC_DIR}/H5overflow.h +) + option (HDF5_GENERATE_HEADERS "Rebuild Generated Files" ON) if (HDF5_GENERATE_HEADERS) set_source_files_properties(${H5_GENERATED_HEADERS} PROPERTIES GENERATED TRUE) @@ -853,7 +897,6 @@ endif () # Setup the H5detect utility which generates H5Tinit with platform # specific type checks inside #----------------------------------------------------------------------------- -option (HDF5_USE_PREGEN "Use pre-generated Files" OFF) if (HDF5_USE_PREGEN) set (HDF5_GENERATED_SOURCE_DIR ${HDF5_USE_PREGEN_DIR}) else () @@ -864,6 +907,27 @@ if (BUILD_SHARED_LIBS) file (MAKE_DIRECTORY "${HDF5_BINARY_DIR}/shared") endif () +if (LOCAL_BATCH_TEST) + if (LOCAL_BATCH_SCRIPT_COMMAND STREQUAL "raybsub") + configure_file ( + ${HDF5_SOURCE_DIR}/bin/batch/${LOCAL_BATCH_SCRIPT_COMMAND} + ${HDF5_BINARY_DIR}/${LOCAL_BATCH_SCRIPT_COMMAND} ESCAPE_QUOTES @ONLY + ) + endif () + if (LOCAL_BATCH_SCRIPT_NAME) + configure_file ( + ${HDF5_SOURCE_DIR}/bin/batch/${LOCAL_BATCH_SCRIPT_NAME}.in.cmake + ${HDF5_BINARY_DIR}/${LOCAL_BATCH_SCRIPT_NAME} ESCAPE_QUOTES @ONLY + ) + endif () + if (LOCAL_BATCH_SCRIPT_PARALLEL_NAME) + configure_file ( + ${HDF5_SOURCE_DIR}/bin/batch/${LOCAL_BATCH_SCRIPT_PARALLEL_NAME}.in.cmake + ${HDF5_BINARY_DIR}/${LOCAL_BATCH_SCRIPT_PARALLEL_NAME} ESCAPE_QUOTES @ONLY + ) + endif () +endif () + if (NOT EXISTS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c) add_executable (H5detect ${HDF5_SRC_DIR}/H5detect.c) target_include_directories(H5detect PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") @@ -871,37 +935,85 @@ if (NOT EXISTS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c) TARGET_C_PROPERTIES (H5detect STATIC) target_link_libraries (H5detect PRIVATE "$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_LIBRARIES}>" $<$<PLATFORM_ID:Windows>:ws2_32.lib> - INTERFACE $<$<PLATFORM_ID:Emscripten>:"-O0"> + PRIVATE $<$<PLATFORM_ID:Emscripten>:"-O0"> ) - add_custom_command ( - OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR}$<TARGET_FILE:H5detect> - ARGS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c - DEPENDS H5detect - WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR} - ) - if (BUILD_SHARED_LIBS) - if (NOT EXISTS ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c) + if (HDF5_BATCH_H5DETECT) + configure_file ( + ${HDF5_SOURCE_DIR}/bin/batch/${HDF5_BATCH_H5DETECT_SCRIPT}.in.cmake + ${HDF5_BINARY_DIR}/${HDF5_BATCH_H5DETECT_SCRIPT} ESCAPE_QUOTES @ONLY + ) + add_custom_command ( + OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c + ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp1 + COMMAND ${HDF5_BATCH_CMD} + ARGS ${HDF5_BINARY_DIR}/${HDF5_BATCH_H5DETECT_SCRIPT} + COMMAND ${CMAKE_COMMAND} + ARGS -E echo "Executed batch command to create H5Tinit.c" + COMMAND ${CMAKE_COMMAND} + ARGS -E touch ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp1 + DEPENDS H5detect + WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR} + ) + add_custom_target (gen_H5Tinit + COMMAND ${CMAKE_COMMAND} -P ${HDF5_SOURCE_DIR}/config/cmake/wait_H5Tinit.cmake + ) + if (BUILD_SHARED_LIBS) add_custom_command ( - OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR}$<TARGET_FILE:H5detect> - ARGS ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c - DEPENDS H5detect - WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR}/shared + OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c + ${HDF5_GENERATED_SOURCE_DIR}/shared/shared_gen_SRCS.stamp1 + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c" "${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c" + COMMAND ${CMAKE_COMMAND} + ARGS -E touch ${HDF5_GENERATED_SOURCE_DIR}/shared/shared_gen_SRCS.stamp1 + DEPENDS gen_H5Tinit ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit_created + WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR} + ) + set_source_files_properties (${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c PROPERTIES GENERATED TRUE) + endif () + else () + add_custom_command ( + OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c + ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp1 + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR}$<TARGET_FILE:H5detect> + ARGS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c + COMMAND ${CMAKE_COMMAND} + ARGS -E touch ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp1 + DEPENDS H5detect + WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR} + ) + if (BUILD_SHARED_LIBS) + add_custom_command ( + OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c + ${HDF5_GENERATED_SOURCE_DIR}/shared/shared_gen_SRCS.stamp1 + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c" "${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c" + COMMAND ${CMAKE_COMMAND} + ARGS -E touch ${HDF5_GENERATED_SOURCE_DIR}/shared/shared_gen_SRCS.stamp1 + DEPENDS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c + WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR} ) - else () set_source_files_properties (${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c PROPERTIES GENERATED TRUE) endif () endif () -else () set_source_files_properties (${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c PROPERTIES GENERATED TRUE) +else () + add_custom_command ( + OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp1 + COMMAND ${CMAKE_COMMAND} + ARGS -E touch ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp1 + DEPENDS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c + WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR} + ) if (BUILD_SHARED_LIBS) add_custom_command ( - OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c + OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/shared/shared_gen_SRCS.stamp1 COMMAND ${CMAKE_COMMAND} ARGS -E copy_if_different "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c" "${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c" + COMMAND ${CMAKE_COMMAND} + ARGS -E touch ${HDF5_GENERATED_SOURCE_DIR}/shared/shared_gen_SRCS.stamp1 DEPENDS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c + WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR} ) set_source_files_properties (${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c PROPERTIES GENERATED TRUE) endif () @@ -913,24 +1025,32 @@ target_compile_definitions(H5make_libsettings PUBLIC ${HDF_EXTRA_C_FLAGS} ${HDF_ TARGET_C_PROPERTIES (H5make_libsettings STATIC) target_link_libraries (H5make_libsettings PRIVATE "$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_LIBRARIES}>" $<$<PLATFORM_ID:Windows>:ws2_32.lib> - INTERFACE $<$<PLATFORM_ID:Emscripten>:"-O0"> + PRIVATE $<$<PLATFORM_ID:Emscripten>:"-O0"> ) add_custom_command ( OUTPUT ${HDF5_BINARY_DIR}/H5lib_settings.c + ${HDF5_BINARY_DIR}/gen_SRCS.stamp2 COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR}$<TARGET_FILE:H5make_libsettings> ARGS ${HDF5_BINARY_DIR}/H5lib_settings.c + COMMAND ${CMAKE_COMMAND} + ARGS -E touch ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp2 DEPENDS H5make_libsettings WORKING_DIRECTORY ${HDF5_BINARY_DIR} ) +set_source_files_properties (${HDF5_BINARY_DIR}/H5lib_settings.c PROPERTIES GENERATED TRUE) if (BUILD_SHARED_LIBS) add_custom_command ( OUTPUT ${HDF5_BINARY_DIR}/shared/H5lib_settings.c - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR}$<TARGET_FILE:H5make_libsettings> - ARGS ${HDF5_BINARY_DIR}/shared/H5lib_settings.c - DEPENDS H5make_libsettings + ${HDF5_BINARY_DIR}/shared/shared_gen_SRCS.stamp2 + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different "${HDF5_BINARY_DIR}/H5lib_settings.c" "${HDF5_BINARY_DIR}/shared/H5lib_settings.c" + COMMAND ${CMAKE_COMMAND} + ARGS -E touch ${HDF5_GENERATED_SOURCE_DIR}/shared/shared_gen_SRCS.stamp2 + DEPENDS ${HDF5_BINARY_DIR}/H5lib_settings.c WORKING_DIRECTORY ${HDF5_BINARY_DIR} ) + set_source_files_properties (${HDF5_BINARY_DIR}/shared/H5lib_settings.c PROPERTIES GENERATED TRUE) endif () ## all_packages="AC,B,B2,D,F,FA,FL,FS,HL,I,O,S,ST,T,Z" @@ -941,6 +1061,7 @@ option (HDF5_ENABLE_DEBUG_APIS "Turn on extra debug output in all packages" OFF) # Add H5Tinit source to build - generated by H5detect/CMake at configure time #----------------------------------------------------------------------------- set (gen_SRCS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c ${HDF5_BINARY_DIR}/H5lib_settings.c) +add_custom_target (gen_${HDF5_LIB_TARGET} ALL DEPENDS ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp1 ${HDF5_GENERATED_SOURCE_DIR}/gen_SRCS.stamp2) add_library (${HDF5_LIB_TARGET} STATIC ${common_SRCS} ${gen_SRCS} ${H5_PUBLIC_HEADERS} ${H5_PRIVATE_HEADERS} ${H5_GENERATED_HEADERS}) target_include_directories(${HDF5_LIB_TARGET} @@ -964,11 +1085,13 @@ target_link_libraries (${HDF5_LIB_TARGET} set_global_variable (HDF5_LIBRARIES_TO_EXPORT ${HDF5_LIB_TARGET}) H5_SET_LIB_OPTIONS (${HDF5_LIB_TARGET} ${HDF5_LIB_NAME} STATIC 0) set_target_properties (${HDF5_LIB_TARGET} PROPERTIES FOLDER libraries) +add_dependencies (${HDF5_LIB_TARGET} gen_${HDF5_LIB_TARGET}) set (install_targets ${HDF5_LIB_TARGET}) if (BUILD_SHARED_LIBS) set (shared_gen_SRCS ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c ${HDF5_BINARY_DIR}/shared/H5lib_settings.c) + add_custom_target (gen_${HDF5_LIBSH_TARGET} ALL DEPENDS ${HDF5_GENERATED_SOURCE_DIR}/shared/shared_gen_SRCS.stamp1 ${HDF5_GENERATED_SOURCE_DIR}/shared/shared_gen_SRCS.stamp2) add_library (${HDF5_LIBSH_TARGET} SHARED ${common_SRCS} ${shared_gen_SRCS} ${H5_PUBLIC_HEADERS} ${H5_PRIVATE_HEADERS} ${H5_GENERATED_HEADERS}) target_include_directories(${HDF5_LIBSH_TARGET} @@ -994,6 +1117,7 @@ if (BUILD_SHARED_LIBS) set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_LIBSH_TARGET}") H5_SET_LIB_OPTIONS (${HDF5_LIBSH_TARGET} ${HDF5_LIB_NAME} SHARED "LIB") set_target_properties (${HDF5_LIBSH_TARGET} PROPERTIES FOLDER libraries) + add_dependencies (${HDF5_LIBSH_TARGET} gen_${HDF5_LIBSH_TARGET}) set (install_targets ${install_targets} ${HDF5_LIBSH_TARGET}) endif () @@ -1005,7 +1129,7 @@ if (NOT HDF5_INSTALL_NO_DEVELOPMENT) install ( FILES ${H5_PUBLIC_HEADERS} - ${H5_GENERATED_HEADERS} + ${H5_PUBLIC_GENERATED_HEADERS} ${HDF5_BINARY_DIR}/H5pubconf.h DESTINATION ${HDF5_INSTALL_INCLUDE_DIR} @@ -138,7 +138,7 @@ H5_init_library(void) if (mpi_initialized && !mpi_finalized) { int key_val; - if(MPI_SUCCESS != (mpi_code = MPI_Comm_create_keyval(MPI_NULL_COPY_FN, + if(MPI_SUCCESS != (mpi_code = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, (MPI_Comm_delete_attr_function *)H5_mpi_delete_cb, &key_val, NULL))) HMPI_GOTO_ERROR(FAIL, "MPI_Comm_create_keyval failed", mpi_code) @@ -1133,7 +1133,7 @@ H5Arename(hid_t loc_id, const char *old_name, const char *new_name) HGOTO_ERROR(H5E_ATTR, H5E_CANTSET, FAIL, "can't set collective metadata read") /* Call private attribute rename routine */ - if(H5A__rename(&loc, old_name, new_name) < 0) + if(H5O__attr_rename(loc.oloc, old_name, new_name) < 0) HGOTO_ERROR(H5E_ATTR, H5E_CANTRENAME, FAIL, "can't rename attribute") } /* end if */ @@ -1379,7 +1379,7 @@ H5Adelete(hid_t loc_id, const char *name) HGOTO_ERROR(H5E_ATTR, H5E_CANTSET, FAIL, "can't set collective metadata read") /* Delete the attribute from the location */ - if(H5A__delete(&loc, name) < 0) + if(H5O__attr_remove(loc.oloc, name) < 0) HGOTO_ERROR(H5E_ATTR, H5E_CANTDELETE, FAIL, "unable to delete attribute") done: @@ -1563,7 +1563,7 @@ H5Aexists(hid_t obj_id, const char *attr_name) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no attribute name") /* Check if the attribute exists */ - if((ret_value = H5A__exists(&loc, attr_name)) < 0) + if((ret_value = H5O__attr_exists(loc.oloc, attr_name)) < 0) HGOTO_ERROR(H5E_ATTR, H5E_CANTGET, FAIL, "unable to determine if attribute exists") done: @@ -30,22 +30,24 @@ /****************/ #include "H5ACmodule.h" /* This source code file is part of the H5AC module */ -#define H5F_FRIEND /* Suppress error about including H5Fpkg */ +#define H5C_FRIEND /* Suppress error about including H5Cpkg */ +#define H5F_FRIEND /* Suppress error about including H5Fpkg */ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5ACpkg.h" /* Metadata cache */ -#include "H5Cprivate.h" /* Cache */ -#include "H5CXprivate.h" /* API Contexts */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fpkg.h" /* Files */ -#include "H5FDprivate.h" /* File drivers */ -#include "H5Iprivate.h" /* IDs */ -#include "H5Pprivate.h" /* Property lists */ -#include "H5SLprivate.h" /* Skip Lists */ +#include "H5private.h" /* Generic Functions */ +#include "H5ACpkg.h" /* Metadata cache */ +#include "H5Clog.h" /* Cache logging */ +#include "H5Cpkg.h" /* Cache */ +#include "H5CXprivate.h" /* API Contexts */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fpkg.h" /* Files */ +#include "H5FDprivate.h" /* File drivers */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Pprivate.h" /* Property lists */ +#include "H5SLprivate.h" /* Skip Lists */ /****************/ @@ -128,7 +130,7 @@ static const H5AC_class_t *const H5AC_class_s[] = { H5AC_DRVRINFO, /* (26) driver info block (supplements superblock) */ H5AC_EPOCH_MARKER, /* (27) epoch marker - always internal to cache */ H5AC_PROXY_ENTRY, /* (28) cache entry proxy */ - H5AC_PREFETCHED_ENTRY /* (29) prefetched entry - always internal to cache */ + H5AC_PREFETCHED_ENTRY /* (29) prefetched entry - always internal to cache */ }; @@ -178,13 +180,16 @@ H5AC__init_package(void) #ifdef H5_HAVE_PARALLEL /* check whether to enable strict collective function calling - sanity checks using MPI barriers */ + * sanity checks using MPI barriers + */ { const char *s; /* String for environment variables */ s = HDgetenv("H5_COLL_API_SANITY_CHECK"); - if(s && HDisdigit(*s)) - H5_coll_api_sanity_check_g = (hbool_t)HDstrtol(s, NULL, 0); + if(s && HDisdigit(*s)) { + long env_val = HDstrtol(s, NULL, 0); + H5_coll_api_sanity_check_g = (0 == env_val) ? FALSE : TRUE; + } } #endif /* H5_HAVE_PARALLEL */ @@ -403,15 +408,13 @@ H5AC_create(const H5F_t *f, H5AC_cache_config_t *config_ptr, H5AC_cache_image_co HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "H5C_set_prefix() failed") #endif /* H5_HAVE_PARALLEL */ - /* Turn on metadata cache logging, if being used */ - if(H5F_USE_MDC_LOGGING(f)) { - if(H5C_set_up_logging(f->shared->cache, H5F_MDC_LOG_LOCATION(f), H5F_START_MDC_LOG_ON_ACCESS(f)) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_CANTINIT, FAIL, "mdc logging setup failed") - - /* Write the log header regardless of current logging status */ - if(H5AC__write_create_cache_log_msg(f->shared->cache) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - } /* end if */ + /* Turn on metadata cache logging, if being used + * This will be JSON until we create a special API call. Trace output + * is generated when logging is controlled by the struct. + */ + if(H5F_USE_MDC_LOGGING(f)) + if(H5C_log_set_up(f->shared->cache, H5F_MDC_LOG_LOCATION(f), H5C_LOG_STYLE_JSON, H5F_START_MDC_LOG_ON_ACCESS(f)) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "mdc logging setup failed") /* Set the cache parameters */ if(H5AC_set_cache_auto_resize_config(f->shared->cache, config_ptr) < 0) @@ -431,6 +434,11 @@ H5AC_create(const H5F_t *f, H5AC_cache_config_t *config_ptr, H5AC_cache_image_co HGOTO_ERROR(H5E_CACHE, H5E_CANTSET, FAIL, "auto resize configuration failed") done: + /* If currently logging, generate a message */ + if(f->shared->cache->log_info->logging) + if(H5C_log_write_create_cache_msg(f->shared->cache, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + #ifdef H5_HAVE_PARALLEL /* if there is a failure, try to tidy up the auxiliary structure */ if(ret_value < 0) { @@ -469,6 +477,8 @@ done: herr_t H5AC_dest(H5F_t *f) { + hbool_t log_enabled; /* TRUE if logging was set up */ + hbool_t curr_logging; /* TRUE if currently logging */ #ifdef H5_HAVE_PARALLEL H5AC_aux_t * aux_ptr = NULL; #endif /* H5_HAVE_PARALLEL */ @@ -486,18 +496,16 @@ H5AC_dest(H5F_t *f) H5AC_stats(f); #endif /* H5AC_DUMP_STATS_ON_CLOSE */ -#if H5AC__TRACE_FILE_ENABLED - if(H5AC__close_trace_file(f->shared->cache) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5AC__close_trace_file() failed") -#endif /* H5AC__TRACE_FILE_ENABLED */ - - if(H5F_USE_MDC_LOGGING(f)) { - /* Write the log footer regardless of current logging status */ - if(H5AC__write_destroy_cache_log_msg(f->shared->cache) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - if(H5C_tear_down_logging(f->shared->cache) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "mdc logging tear-down failed") - } /* end if */ + /* Check if log messages are being emitted */ + if(H5C_get_logging_status(f->shared->cache, &log_enabled, &curr_logging) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to get logging status") + if(log_enabled && curr_logging) + if(H5C_log_write_destroy_cache_msg(f->shared->cache) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + /* Tear down logging */ + if(log_enabled) + if(H5C_log_tear_down(f->shared->cache) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "mdc logging tear-down failed") #ifdef H5_HAVE_PARALLEL /* destroying the cache, so clear all collective entries */ @@ -565,8 +573,6 @@ done: herr_t H5AC_evict(H5F_t *f) { - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -576,10 +582,6 @@ H5AC_evict(H5F_t *f) HDassert(f->shared); HDassert(f->shared->cache); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(f->shared->cache, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - /* Evict all entries in the cache except the pinned superblock entry */ if(H5C_evict(f) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFREE, FAIL, "can't evict cache") @@ -587,9 +589,9 @@ H5AC_evict(H5F_t *f) done: /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_evict_cache_log_msg(f->shared->cache, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(f->shared->cache->log_info->logging) + if(H5C_log_write_evict_cache_msg(f->shared->cache, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_evict() */ @@ -613,12 +615,6 @@ herr_t H5AC_expunge_entry(H5F_t *f, const H5AC_class_t *type, haddr_t addr, unsigned flags) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -631,36 +627,14 @@ H5AC_expunge_entry(H5F_t *f, const H5AC_class_t *type, haddr_t addr, HDassert(type->serialize); HDassert(H5F_addr_defined(addr)); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(f->shared->cache, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - -#if H5AC__TRACE_FILE_ENABLED -{ - H5AC_t * cache_ptr = f->shared->cache; - - /* For the expunge entry call, only the addr, and type id are really - * necessary in the trace file. Write the return value to catch occult - * errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr(cache_ptr))) - sprintf(trace, "%s 0x%lx %d", FUNC, (unsigned long)addr, (int)(type->id)); -} -#endif /* H5AC__TRACE_FILE_ENABLED */ - if(H5C_expunge_entry(f, type, addr, flags) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTEXPUNGE, FAIL, "H5C_expunge_entry() failed") done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr != NULL) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_expunge_entry_log_msg(f->shared->cache, addr, type->id, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(f->shared->cache->log_info->logging) + if(H5C_log_write_expunge_entry_msg(f->shared->cache, addr, type->id, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_expunge_entry() */ @@ -689,12 +663,6 @@ done: herr_t H5AC_flush(H5F_t *f) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -704,18 +672,6 @@ H5AC_flush(H5F_t *f) HDassert(f->shared); HDassert(f->shared->cache); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(f->shared->cache, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - -#if H5AC__TRACE_FILE_ENABLED - /* For the flush, only the flags are really necessary in the trace file. - * Write the result to catch occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr(cache_ptr))) - sprintf(trace, "%s", FUNC); -#endif /* H5AC__TRACE_FILE_ENABLED */ - #ifdef H5_HAVE_PARALLEL /* flushing the cache, so clear all collective entries */ if(H5C_clear_coll_entries(f->shared->cache, FALSE) < 0) @@ -732,15 +688,10 @@ H5AC_flush(H5F_t *f) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't flush cache") done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr != NULL) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_flush_cache_log_msg(f->shared->cache, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(f->shared->cache->log_info->logging) + if(H5C_log_write_flush_cache_msg(f->shared->cache, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_flush() */ @@ -873,13 +824,6 @@ herr_t H5AC_insert_entry(H5F_t *f, const H5AC_class_t *type, haddr_t addr, void *thing, unsigned int flags) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - size_t trace_entry_size = 0; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -893,26 +837,9 @@ H5AC_insert_entry(H5F_t *f, const H5AC_class_t *type, haddr_t addr, void *thing, HDassert(H5F_addr_defined(addr)); HDassert(thing); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(f->shared->cache, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - /* Check for invalid access request */ if(0 == (H5F_INTENT(f) & H5F_ACC_RDWR)) - HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "no write intent on file") - -#if H5AC__TRACE_FILE_ENABLED - /* For the insert, only the addr, size, type id and flags are really - * necessary in the trace file. Write the result to catch occult - * errors. - * - * Note that some data is not available right now -- put what we can - * in the trace buffer now, and fill in the rest at the end. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr(cache_ptr))) - sprintf(trace, "%s 0x%lx %d 0x%x", FUNC, (unsigned long)addr, type->id, - flags); -#endif /* H5AC__TRACE_FILE_ENABLED */ + HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "no write intent on file") #if H5AC_DO_TAGGING_SANITY_CHECKS if(!H5C_get_ignore_tags(f->shared->cache) && H5AC__verify_tag(type) < 0) @@ -923,12 +850,6 @@ H5AC_insert_entry(H5F_t *f, const H5AC_class_t *type, haddr_t addr, void *thing, if(H5C_insert_entry(f, type, addr, thing, flags) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTINS, FAIL, "H5C_insert_entry() failed") -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr != NULL) - /* make note of the entry size */ - trace_entry_size = ((H5C_cache_entry_t *)thing)->size; -#endif /* H5AC__TRACE_FILE_ENABLED */ - #ifdef H5_HAVE_PARALLEL { H5AC_aux_t *aux_ptr; @@ -947,14 +868,10 @@ H5AC_insert_entry(H5F_t *f, const H5AC_class_t *type, haddr_t addr, void *thing, #endif /* H5_HAVE_PARALLEL */ done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr != NULL) - HDfprintf(trace_file_ptr, "%s %d %d\n", trace, (int)trace_entry_size, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_insert_entry_log_msg(f->shared->cache, addr, type->id, flags, ((H5C_cache_entry_t *)thing)->size, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(f->shared->cache->log_info->logging) + if(H5C_log_write_insert_entry_msg(f->shared->cache, addr, type->id, flags, ((H5C_cache_entry_t *)thing)->size, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_insert_entry() */ @@ -1011,12 +928,6 @@ done: herr_t H5AC_mark_entry_dirty(void *thing) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ H5AC_info_t *entry_ptr = NULL; /* Pointer to the cache entry */ H5C_t *cache_ptr = NULL; /* Pointer to the entry's associated metadata cache */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1030,19 +941,6 @@ H5AC_mark_entry_dirty(void *thing) entry_ptr = (H5AC_info_t *)thing; cache_ptr = entry_ptr->cache_ptr; -#if H5AC__TRACE_FILE_ENABLED - /* For the mark pinned or protected entry dirty call, only the addr - * is really necessary in the trace file. Write the result to catch - * occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr_from_entry(thing))) - sprintf(trace, "%s 0x%lx", FUNC, (unsigned long)(entry_ptr->addr)); -#endif /* H5AC__TRACE_FILE_ENABLED */ - - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache_ptr, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - #ifdef H5_HAVE_PARALLEL { H5AC_aux_t *aux_ptr; @@ -1059,15 +957,10 @@ H5AC_mark_entry_dirty(void *thing) HGOTO_ERROR(H5E_CACHE, H5E_CANTMARKDIRTY, FAIL, "can't mark pinned or protected entry dirty") done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_mark_dirty_entry_log_msg(cache_ptr, entry_ptr, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(cache_ptr->log_info->logging) + if(H5C_log_write_mark_entry_dirty_msg(cache_ptr, entry_ptr, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_mark_entry_dirty() */ @@ -1076,7 +969,7 @@ done: /*------------------------------------------------------------------------- * Function: H5AC_mark_entry_clean * - * Purpose: Mark a pinned entry as dirty. The target + * Purpose: Mark a pinned entry as clean. The target * entry MUST be pinned. * * Return: Non-negative on success/Negative on failure @@ -1089,12 +982,6 @@ done: herr_t H5AC_mark_entry_clean(void *thing) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ H5AC_info_t *entry_ptr = NULL; /* Pointer to the cache entry */ H5C_t *cache_ptr = NULL; /* Pointer to the entry's associated metadata cache */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1104,23 +991,9 @@ H5AC_mark_entry_clean(void *thing) /* Sanity check */ HDassert(thing); -#if H5AC__TRACE_FILE_ENABLED - /* For the mark pinned or protected entry clean call, only the addr - * is really necessary in the trace file. Write the result to catch - * occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr_from_entry(thing))) - sprintf(trace, "%s 0x%lx", FUNC, - (unsigned long)(((H5C_cache_entry_t *)thing)->addr)); -#endif /* H5AC__TRACE_FILE_ENABLED */ - entry_ptr = (H5AC_info_t *)thing; cache_ptr = entry_ptr->cache_ptr; - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache_ptr, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - #ifdef H5_HAVE_PARALLEL { H5AC_aux_t *aux_ptr; @@ -1137,15 +1010,10 @@ H5AC_mark_entry_clean(void *thing) HGOTO_ERROR(H5E_CACHE, H5E_CANTMARKCLEAN, FAIL, "can't mark pinned or protected entry clean") done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_mark_clean_entry_log_msg(cache_ptr, entry_ptr, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(cache_ptr->log_info->logging) + if(H5C_log_write_mark_entry_clean_msg(cache_ptr, entry_ptr, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_mark_entry_clean() */ @@ -1167,12 +1035,6 @@ done: herr_t H5AC_mark_entry_unserialized(void *thing) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ H5AC_info_t *entry_ptr = NULL; /* Pointer to the cache entry */ H5C_t *cache_ptr = NULL; /* Pointer to the entry's associated metadata cache */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1186,32 +1048,14 @@ H5AC_mark_entry_unserialized(void *thing) entry_ptr = (H5AC_info_t *)thing; cache_ptr = entry_ptr->cache_ptr; -#if H5AC__TRACE_FILE_ENABLED - /* For the mark entry unserialized call, only the addr - * is really necessary in the trace file. Write the result to catch - * occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr_from_entry(thing))) - sprintf(trace, "%s 0x%lx", FUNC, (unsigned long)(entry_ptr->addr)); -#endif /* H5AC__TRACE_FILE_ENABLED */ - - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache_ptr, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "unable to get logging status") - if(H5C_mark_entry_unserialized(thing) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTMARKUNSERIALIZED, FAIL, "can't mark entry unserialized") done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_mark_unserialized_entry_log_msg(cache_ptr, entry_ptr, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(cache_ptr->log_info->logging) + if(H5C_log_write_mark_unserialized_entry_msg(cache_ptr, entry_ptr, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_mark_entry_unserialized() */ @@ -1233,12 +1077,6 @@ done: herr_t H5AC_mark_entry_serialized(void *thing) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ H5AC_info_t *entry_ptr = NULL; /* Pointer to the cache entry */ H5C_t *cache_ptr = NULL; /* Pointer to the entry's associated metadata cache */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1248,36 +1086,17 @@ H5AC_mark_entry_serialized(void *thing) /* Sanity check */ HDassert(thing); -#if H5AC__TRACE_FILE_ENABLED - /* For the mark entry serializedn call, only the addr - * is really necessary in the trace file. Write the result to catch - * occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr_from_entry(thing))) - sprintf(trace, "%s 0x%lx", FUNC, - (unsigned long)(((H5C_cache_entry_t *)thing)->addr)); -#endif /* H5AC__TRACE_FILE_ENABLED */ - entry_ptr = (H5AC_info_t *)thing; cache_ptr = entry_ptr->cache_ptr; - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache_ptr, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "unable to get logging status") - if(H5C_mark_entry_serialized(thing) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTMARKSERIALIZED, FAIL, "can't mark entry serialized") done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_mark_serialized_entry_log_msg(cache_ptr, entry_ptr, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(cache_ptr->log_info->logging) + if(H5C_log_write_mark_serialized_entry_msg(cache_ptr, entry_ptr, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_mark_entry_serialized() */ @@ -1300,15 +1119,9 @@ done: herr_t H5AC_move_entry(H5F_t *f, const H5AC_class_t *type, haddr_t old_addr, haddr_t new_addr) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ #ifdef H5_HAVE_PARALLEL H5AC_aux_t *aux_ptr; #endif /* H5_HAVE_PARALLEL */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -1321,20 +1134,6 @@ H5AC_move_entry(H5F_t *f, const H5AC_class_t *type, haddr_t old_addr, haddr_t ne HDassert(H5F_addr_defined(new_addr)); HDassert(H5F_addr_ne(old_addr, new_addr)); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(f->shared->cache, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - -#if H5AC__TRACE_FILE_ENABLED - /* For the move call, only the old addr and new addr are really - * necessary in the trace file. Include the type id so we don't have to - * look it up. Also write the result to catch occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr(cache_ptr))) - sprintf(trace, "%s 0x%lx 0x%lx %d", FUNC, (unsigned long)old_addr, - (unsigned long)new_addr, (int)(type->id)); -#endif /* H5AC__TRACE_FILE_ENABLED */ - #ifdef H5_HAVE_PARALLEL /* Log moving the entry */ if(NULL != (aux_ptr = (H5AC_aux_t *)H5C_get_aux_ptr(f->shared->cache))) @@ -1353,15 +1152,10 @@ H5AC_move_entry(H5F_t *f, const H5AC_class_t *type, haddr_t old_addr, haddr_t ne #endif /* H5_HAVE_PARALLEL */ done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr != NULL) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_move_entry_log_msg(f->shared->cache, old_addr, new_addr, type->id, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(f->shared->cache->log_info->logging) + if(H5C_log_write_move_entry_msg(f->shared->cache, old_addr, new_addr, type->id, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_move_entry() */ @@ -1383,12 +1177,6 @@ done: herr_t H5AC_pin_protected_entry(void *thing) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ H5AC_info_t *entry_ptr = NULL; /* Pointer to the cache entry */ H5C_t *cache_ptr = NULL; /* Pointer to the entry's associated metadata cache */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1398,37 +1186,19 @@ H5AC_pin_protected_entry(void *thing) /* Sanity check */ HDassert(thing); -#if H5AC__TRACE_FILE_ENABLED - /* For the pin protected entry call, only the addr is really necessary - * in the trace file. Also write the result to catch occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr_from_entry(thing))) - sprintf(trace, "%s 0x%lx", FUNC, - (unsigned long)(((H5C_cache_entry_t *)thing)->addr)); -#endif /* H5AC__TRACE_FILE_ENABLED */ - entry_ptr = (H5AC_info_t *)thing; cache_ptr = entry_ptr->cache_ptr; HDassert(cache_ptr); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache_ptr, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - /* Pin entry */ if(H5C_pin_protected_entry(thing) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTPIN, FAIL, "can't pin entry") done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_pin_entry_log_msg(cache_ptr, entry_ptr, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(cache_ptr->log_info->logging) + if(H5C_log_write_pin_entry_msg(cache_ptr, entry_ptr, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_pin_protected_entry() */ @@ -1488,12 +1258,6 @@ done: herr_t H5AC_create_flush_dependency(void * parent_thing, void * child_thing) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ H5AC_info_t *entry_ptr = NULL; /* Pointer to the cache entry */ H5C_t *cache_ptr = NULL; /* Pointer to the entry's associated metadata cache */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1504,35 +1268,19 @@ H5AC_create_flush_dependency(void * parent_thing, void * child_thing) HDassert(parent_thing); HDassert(child_thing); -#if H5AC__TRACE_FILE_ENABLED - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr_from_entry(parent_thing))) - sprintf(trace, "%s %lx %lx", FUNC, - (unsigned long)(((H5C_cache_entry_t *)parent_thing)->addr), - (unsigned long)(((H5C_cache_entry_t *)child_thing)->addr)); -#endif /* H5AC__TRACE_FILE_ENABLED */ - entry_ptr = (H5AC_info_t *)parent_thing; cache_ptr = entry_ptr->cache_ptr; HDassert(cache_ptr); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache_ptr, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - /* Create the flush dependency */ if(H5C_create_flush_dependency(parent_thing, child_thing) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTDEPEND, FAIL, "H5C_create_flush_dependency() failed") done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr != NULL) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_create_fd_log_msg(cache_ptr, (H5AC_info_t *)parent_thing, (H5AC_info_t *)child_thing, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(cache_ptr->log_info->logging) + if(H5C_log_write_create_fd_msg(cache_ptr, (H5AC_info_t *)parent_thing, (H5AC_info_t *)child_thing, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_create_flush_dependency() */ @@ -1566,14 +1314,7 @@ void * H5AC_protect(H5F_t *f, const H5AC_class_t *type, haddr_t addr, void *udata, unsigned flags) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - size_t trace_entry_size = 0; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ void * thing = NULL; /* Pointer to native data structure for entry */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ void * ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI(NULL) @@ -1586,10 +1327,6 @@ H5AC_protect(H5F_t *f, const H5AC_class_t *type, haddr_t addr, void *udata, HDassert(type->serialize); HDassert(H5F_addr_defined(addr)); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(f->shared->cache, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, NULL, "unable to get logging status") - /* Check for unexpected flags -- H5C__FLUSH_COLLECTIVELY_FLAG * only permitted in the parallel case. */ @@ -1606,16 +1343,6 @@ H5AC_protect(H5F_t *f, const H5AC_class_t *type, haddr_t addr, void *udata, if((0 == (H5F_INTENT(f) & H5F_ACC_RDWR)) && (0 == (flags & H5C__READ_ONLY_FLAG))) HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, NULL, "no write intent on file") -#if H5AC__TRACE_FILE_ENABLED - /* For the protect call, only the addr, size, type id, and flags are - * necessary in the trace file. Also indicate whether the call was - * successful to catch occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr(cache_ptr))) - sprintf(trace, "%s 0x%lx %d 0x%x", FUNC, (unsigned long)addr, - (int)(type->id), flags); -#endif /* H5AC__TRACE_FILE_ENABLED */ - #if H5AC_DO_TAGGING_SANITY_CHECKS if(!H5C_get_ignore_tags(f->shared->cache) && H5AC__verify_tag(type) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTTAG, NULL, "Bad tag value") @@ -1624,28 +1351,18 @@ H5AC_protect(H5F_t *f, const H5AC_class_t *type, haddr_t addr, void *udata, if(NULL == (thing = H5C_protect(f, type, addr, udata, flags))) HGOTO_ERROR(H5E_CACHE, H5E_CANTPROTECT, NULL, "H5C_protect() failed") -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr != NULL) - /* Make note of the entry size */ - trace_entry_size = ((H5C_cache_entry_t *)thing)->size; -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* Set return value */ ret_value = thing; done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr != NULL) - HDfprintf(trace_file_ptr, "%s %d %d\n", trace, (int)trace_entry_size, (int)(ret_value != NULL)); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) { + { herr_t fake_ret_value = (NULL == ret_value) ? FAIL : SUCCEED; - if(H5AC__write_protect_entry_log_msg(f->shared->cache, (H5AC_info_t *)thing, flags, fake_ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, NULL, "unable to emit log message") - } /* end if */ + if(f->shared->cache->log_info->logging) + if(H5C_log_write_protect_entry_msg(f->shared->cache, (H5AC_info_t *)thing, type->id, flags, fake_ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, NULL, "unable to emit log message") + } FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_protect() */ @@ -1666,12 +1383,6 @@ done: herr_t H5AC_resize_entry(void *thing, size_t new_size) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ H5AC_info_t *entry_ptr = NULL; /* Pointer to the cache entry */ H5C_t *cache_ptr = NULL; /* Pointer to the entry's associated metadata cache */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1681,25 +1392,10 @@ H5AC_resize_entry(void *thing, size_t new_size) /* Sanity check */ HDassert(thing); -#if H5AC__TRACE_FILE_ENABLED - /* For the resize pinned entry call, only the addr, and new_size are - * really necessary in the trace file. Write the result to catch - * occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr_from_entry(thing))) - sprintf(trace, "%s 0x%lx %d", FUNC, - (unsigned long)(((H5C_cache_entry_t *)thing)->addr), - (int)new_size); -#endif /* H5AC__TRACE_FILE_ENABLED */ - entry_ptr = (H5AC_info_t *)thing; cache_ptr = entry_ptr->cache_ptr; HDassert(cache_ptr); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache_ptr, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - /* Resize the entry */ if(H5C_resize_entry(thing, new_size) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTRESIZE, FAIL, "can't resize entry") @@ -1716,15 +1412,10 @@ H5AC_resize_entry(void *thing, size_t new_size) #endif /* H5_HAVE_PARALLEL */ done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_resize_entry_log_msg(cache_ptr, entry_ptr, new_size, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(cache_ptr->log_info->logging) + if(H5C_log_write_resize_entry_msg(cache_ptr, entry_ptr, new_size, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_resize_entry() */ @@ -1746,12 +1437,6 @@ done: herr_t H5AC_unpin_entry(void *thing) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ H5AC_info_t *entry_ptr = NULL; /* Pointer to the cache entry */ H5C_t *cache_ptr = NULL; /* Pointer to the entry's associated metadata cache */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1761,37 +1446,19 @@ H5AC_unpin_entry(void *thing) /* Sanity check */ HDassert(thing); -#if H5AC__TRACE_FILE_ENABLED - /* For the unpin entry call, only the addr is really necessary - * in the trace file. Also write the result to catch occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr_from_entry(thing))) - sprintf(trace, "%s 0x%lx", FUNC, - (unsigned long)(((H5C_cache_entry_t *)thing)->addr)); -#endif /* H5AC__TRACE_FILE_ENABLED */ - entry_ptr = (H5AC_info_t *)thing; cache_ptr = entry_ptr->cache_ptr; HDassert(cache_ptr); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache_ptr, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - /* Unpin the entry */ if(H5C_unpin_entry(thing) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTUNPIN, FAIL, "can't unpin entry") done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_unpin_entry_log_msg(cache_ptr, entry_ptr, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(cache_ptr->log_info->logging) + if(H5C_log_write_unpin_entry_msg(cache_ptr, entry_ptr, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_unpin_entry() */ @@ -1812,12 +1479,6 @@ done: herr_t H5AC_destroy_flush_dependency(void * parent_thing, void * child_thing) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ H5AC_info_t *entry_ptr = NULL; /* Pointer to the cache entry */ H5C_t *cache_ptr = NULL; /* Pointer to the entry's associated metadata cache */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1828,35 +1489,19 @@ H5AC_destroy_flush_dependency(void * parent_thing, void * child_thing) HDassert(parent_thing); HDassert(child_thing); -#if H5AC__TRACE_FILE_ENABLED - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr_from_entry(parent_thing))) - sprintf(trace, "%s %llx %llx", FUNC, - (unsigned long long)(((H5C_cache_entry_t *)parent_thing)->addr), - (unsigned long long)(((H5C_cache_entry_t *)child_thing)->addr)); -#endif /* H5AC__TRACE_FILE_ENABLED */ - entry_ptr = (H5AC_info_t *)parent_thing; cache_ptr = entry_ptr->cache_ptr; HDassert(cache_ptr); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache_ptr, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - /* Destroy the flush dependency */ if(H5C_destroy_flush_dependency(parent_thing, child_thing) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTUNDEPEND, FAIL, "H5C_destroy_flush_dependency() failed") done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr != NULL) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_destroy_fd_log_msg(cache_ptr, (H5AC_info_t *)parent_thing, (H5AC_info_t *)child_thing, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(cache_ptr->log_info->logging) + if(H5C_log_write_destroy_fd_msg(cache_ptr, (H5AC_info_t *)parent_thing, (H5AC_info_t *)child_thing, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_destroy_flush_dependency() */ @@ -1904,17 +1549,11 @@ herr_t H5AC_unprotect(H5F_t *f, const H5AC_class_t *type, haddr_t addr, void *thing, unsigned flags) { -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ hbool_t dirtied; hbool_t deleted; #ifdef H5_HAVE_PARALLEL H5AC_aux_t * aux_ptr = NULL; #endif /* H5_HAVE_PARALLEL */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -1931,19 +1570,6 @@ H5AC_unprotect(H5F_t *f, const H5AC_class_t *type, haddr_t addr, void *thing, HDassert( ((H5AC_info_t *)thing)->addr == addr ); HDassert( ((H5AC_info_t *)thing)->type == type ); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(f->shared->cache, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - -#if H5AC__TRACE_FILE_ENABLED - /* For the unprotect call, only the addr, type id, flags, and possible - * new size are really necessary in the trace file. Write the return - * value to catch occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr(cache_ptr))) - sprintf(trace, "%s 0x%lx %d", FUNC, (unsigned long)addr, (int)(type->id)); -#endif /* H5AC__TRACE_FILE_ENABLED */ - dirtied = (hbool_t)(((flags & H5AC__DIRTIED_FLAG) == H5AC__DIRTIED_FLAG) || (((H5AC_info_t *)thing)->dirtied)); deleted = (hbool_t)((flags & H5C__DELETED_FLAG) == H5C__DELETED_FLAG); @@ -1984,15 +1610,10 @@ H5AC_unprotect(H5F_t *f, const H5AC_class_t *type, haddr_t addr, void *thing, #endif /* H5_HAVE_PARALLEL */ done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr != NULL) - HDfprintf(trace_file_ptr, "%s 0x%x %d\n", trace, (unsigned)flags, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_unprotect_entry_log_msg(f->shared->cache, (H5AC_info_t *)thing, type->id, flags, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(f->shared->cache->log_info->logging) + if(H5C_log_write_unprotect_entry_msg(f->shared->cache, addr, type->id, flags, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_unprotect() */ @@ -2191,12 +1812,6 @@ done: herr_t H5AC_set_cache_auto_resize_config(H5AC_t *cache_ptr, H5AC_cache_config_t *config_ptr) { -#if H5AC__TRACE_FILE_ENABLED - H5AC_cache_config_t trace_config = H5AC__DEFAULT_CACHE_CONFIG; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ H5C_auto_size_ctl_t internal_config; herr_t ret_value = SUCCEED; /* Return value */ @@ -2205,18 +1820,6 @@ H5AC_set_cache_auto_resize_config(H5AC_t *cache_ptr, H5AC_cache_config_t *config /* Sanity checks */ HDassert(cache_ptr); - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache_ptr, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - -#if H5AC__TRACE_FILE_ENABLED - /* Make note of the new configuration. Don't look up the trace file - * pointer, as that may change before we use it. - */ - if(config_ptr != NULL) - trace_config = *config_ptr; -#endif /* H5AC__TRACE_FILE_ENABLED */ - if(cache_ptr == NULL) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "bad cache_ptr on entry") #ifdef H5_HAVE_PARALLEL @@ -2233,23 +1836,25 @@ H5AC_set_cache_auto_resize_config(H5AC_t *cache_ptr, H5AC_cache_config_t *config if(H5AC_validate_config(config_ptr) != SUCCEED) HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "Bad cache configuration") - if(config_ptr->open_trace_file) { - FILE * file_ptr; - - if(NULL == (file_ptr = H5C_get_trace_file_ptr(cache_ptr))) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5C_get_trace_file_ptr() failed") - - if((!(config_ptr->close_trace_file)) && (file_ptr != NULL)) - HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "Trace file already open") - } /* end if */ - - /* Close & reopen trace file, if requested */ + /* If the cache config struct is being used to control logging, perform + * the open/close operations. Note that this is the only place where the + * struct-based control opens and closes the log files so we also have + * to write start/stop messages. + */ + /* close */ if(config_ptr->close_trace_file) - if(H5AC__close_trace_file(cache_ptr) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5AC__close_trace_file() failed") - if(config_ptr->open_trace_file) - if(H5AC__open_trace_file(cache_ptr, config_ptr->trace_file_name) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "H5AC__open_trace_file() failed") + if(H5C_log_tear_down((H5C_t *)cache_ptr) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "mdc logging tear-down failed") + + /* open */ + if(config_ptr->open_trace_file) { + /* Turn on metadata cache logging. + * This will be trace output until we create a special API call. JSON + * output is generated when logging is controlled by the H5P calls. + */ + if(H5C_log_set_up((H5C_t *)cache_ptr, config_ptr->trace_file_name, H5C_LOG_STYLE_TRACE, TRUE) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "mdc logging setup failed") + } /* Convert external configuration to internal representation */ if(H5AC__ext_config_2_int_config(config_ptr, &internal_config) < 0) @@ -2275,52 +1880,10 @@ H5AC_set_cache_auto_resize_config(H5AC_t *cache_ptr, H5AC_cache_config_t *config #endif /* H5_HAVE_PARALLEL */ done: -#if H5AC__TRACE_FILE_ENABLED - /* For the set cache auto resize config call, only the contents - * of the config is necessary in the trace file. Write the return - * value to catch occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr(cache_ptr))) - HDfprintf(trace_file_ptr, - "%s %d %d %d %d \"%s\" %d %d %d %f %d %d %ld %d %f %f %d %f %f %d %d %d %f %f %d %d %d %d %f %zu %d %d\n", - "H5AC_set_cache_auto_resize_config", - trace_config.version, - (int)(trace_config.rpt_fcn_enabled), - (int)(trace_config.open_trace_file), - (int)(trace_config.close_trace_file), - trace_config.trace_file_name, - (int)(trace_config.evictions_enabled), - (int)(trace_config.set_initial_size), - (int)(trace_config.initial_size), - trace_config.min_clean_fraction, - (int)(trace_config.max_size), - (int)(trace_config.min_size), - trace_config.epoch_length, - (int)(trace_config.incr_mode), - trace_config.lower_hr_threshold, - trace_config.increment, - (int)(trace_config.flash_incr_mode), - trace_config.flash_multiple, - trace_config.flash_threshold, - (int)(trace_config.apply_max_increment), - (int)(trace_config.max_increment), - (int)(trace_config.decr_mode), - trace_config.upper_hr_threshold, - trace_config.decrement, - (int)(trace_config.apply_max_decrement), - (int)(trace_config.max_decrement), - trace_config.epochs_before_eviction, - (int)(trace_config.apply_empty_reserve), - trace_config.empty_reserve, - trace_config.dirty_bytes_threshold, - trace_config.metadata_write_strategy, - (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_set_cache_config_log_msg(cache_ptr, config_ptr, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(cache_ptr->log_info->logging) + if(H5C_log_write_set_cache_config_msg(cache_ptr, config_ptr, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_set_cache_auto_resize_config() */ @@ -2366,12 +1929,12 @@ H5AC_validate_config(H5AC_cache_config_t *config_ptr) if(config_ptr->open_trace_file) { size_t name_len; - /* Can't really test the trace_file_name field without trying to - * open the file, so we will content ourselves with a couple of - * sanity checks on the length of the file name. - */ - name_len = HDstrlen(config_ptr->trace_file_name); - if(name_len == 0) + /* Can't really test the trace_file_name field without trying to + * open the file, so we will content ourselves with a couple of + * sanity checks on the length of the file name. + */ + name_len = HDstrlen(config_ptr->trace_file_name); + if(name_len == 0) HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "config_ptr->trace_file_name is empty") else if(name_len > H5AC__MAX_TRACE_FILE_NAME_LEN) HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "config_ptr->trace_file_name too long") @@ -2840,8 +2403,18 @@ H5AC_cork(H5F_t *f, haddr_t obj_addr, unsigned action, hbool_t *corked) HDassert(H5F_addr_defined(obj_addr)); HDassert(action == H5AC__SET_CORK || action == H5AC__UNCORK || action == H5AC__GET_CORKED); - if(action == H5AC__GET_CORKED) - HDassert(corked); + /* Skip the search on "tag_list" when there are no "corked" objects. + * This is done to mitigate the slow down when closing objects. + * Re-visit this optimization when we optimize tag info management + * in the future. + */ + if(action == H5AC__GET_CORKED) { + HDassert(corked); + if(H5C_get_num_objs_corked(f->shared->cache) == 0) { + *corked = FALSE; + HGOTO_DONE(SUCCEED) + } + } if(H5C_cork(f->shared->cache, obj_addr, action, corked) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Cannot perform the cork action") @@ -3061,12 +2634,6 @@ H5AC_remove_entry(void *_entry) { H5AC_info_t *entry = (H5AC_info_t *)_entry; /* Entry to remove */ H5C_t *cache = NULL; /* Pointer to the entry's associated metadata cache */ -#if H5AC__TRACE_FILE_ENABLED - char trace[128] = ""; - FILE * trace_file_ptr = NULL; -#endif /* H5AC__TRACE_FILE_ENABLED */ - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -3076,32 +2643,15 @@ H5AC_remove_entry(void *_entry) cache = entry->cache_ptr; HDassert(cache); -#if H5AC__TRACE_FILE_ENABLED - /* For the remove entry call, only the addr is really necessary - * in the trace file. Also write the result to catch occult errors. - */ - if(NULL != (trace_file_ptr = H5C_get_trace_file_ptr_from_entry(entry))) - sprintf(trace, "%s 0x%lx", FUNC, (unsigned long)(entry->addr)); -#endif /* H5AC__TRACE_FILE_ENABLED */ - - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "unable to get logging status") - /* Remove the entry from the cache*/ if(H5C_remove_entry(entry) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTREMOVE, FAIL, "can't remove entry") done: -#if H5AC__TRACE_FILE_ENABLED - if(trace_file_ptr) - HDfprintf(trace_file_ptr, "%s %d\n", trace, (int)ret_value); -#endif /* H5AC__TRACE_FILE_ENABLED */ - /* If currently logging, generate a message */ - if(curr_logging) - if(H5AC__write_remove_entry_log_msg(cache, entry, ret_value) < 0) - HDONE_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to emit log message") + if(cache->log_info->logging) + if(H5C_log_write_remove_entry_msg(cache, entry, ret_value) < 0) + HDONE_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_remove_entry() */ diff --git a/src/H5ACdbg.c b/src/H5ACdbg.c index c6d71a8..1235206 100644 --- a/src/H5ACdbg.c +++ b/src/H5ACdbg.c @@ -136,121 +136,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5AC__close_trace_file() - * - * Purpose: If a trace file is open, stop logging calls to the cache, - * and close the file. - * - * Note that the function does nothing if there is no trace - * file. - * - * Return: Non-negative on success/Negative on failure - * - * Programmer: John Mainzer - * 6/2/06 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__close_trace_file(H5AC_t *cache_ptr) -{ - FILE * trace_file_ptr; - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE - - if(cache_ptr == NULL) - HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "NULL cache_ptr on entry.") - - if(NULL == (trace_file_ptr = H5C_get_trace_file_ptr(cache_ptr))) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5C_get_trace_file_ptr() failed.") - - if(trace_file_ptr != NULL) { - if(H5C_set_trace_file_ptr(cache_ptr, NULL) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5C_set_trace_file_ptr() failed.") - - if(HDfclose(trace_file_ptr) != 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "can't close metadata cache trace file") - } /* end if */ - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__close_trace_file() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__open_trace_file() - * - * Purpose: Open a trace file, and start logging calls to the cache. - * - * This logging is done at the H5C level, and will only take - * place if H5C_TRACE_FILE_ENABLED (defined in H5Cprivate.h) - * is TRUE. - * - * Return: Non-negative on success/Negative on failure - * - * Programmer: John Mainzer - * 6/1/06 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__open_trace_file(H5AC_t *cache_ptr, const char *trace_file_name) -{ - char file_name[H5AC__MAX_TRACE_FILE_NAME_LEN + H5C__PREFIX_LEN + 2]; - FILE * file_ptr; - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE - - HDassert(cache_ptr); - - /* Check args */ - if(cache_ptr == NULL) - HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "cache_ptr NULL on entry.") - if(trace_file_name == NULL) - HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "NULL trace_file_name on entry.") - if(HDstrlen(trace_file_name) > H5AC__MAX_TRACE_FILE_NAME_LEN) - HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "trace file name too long.") - if(NULL != (file_ptr = H5C_get_trace_file_ptr(cache_ptr))) - HGOTO_ERROR(H5E_CACHE, H5E_FILEOPEN, FAIL, "trace file already open.") - -#ifdef H5_HAVE_PARALLEL -{ - H5AC_aux_t * aux_ptr; - - aux_ptr = (H5AC_aux_t *)H5C_get_aux_ptr(cache_ptr); - if(aux_ptr == NULL) - sprintf(file_name, "%s", trace_file_name); - else { - if(aux_ptr->magic != H5AC__H5AC_AUX_T_MAGIC) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Bad aux_ptr->magic.") - - sprintf(file_name, "%s.%d", trace_file_name, aux_ptr->mpi_rank); - } /* end else */ - - if(HDstrlen(file_name) > H5AC__MAX_TRACE_FILE_NAME_LEN + H5C__PREFIX_LEN + 1) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "cooked trace file name too long.") -} -#else /* H5_HAVE_PARALLEL */ - HDsnprintf(file_name, (size_t)(H5AC__MAX_TRACE_FILE_NAME_LEN + H5C__PREFIX_LEN + 1), - "%s", trace_file_name); -#endif /* H5_HAVE_PARALLEL */ - - if((file_ptr = HDfopen(file_name, "w")) == NULL) - HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "trace file open failed.") - - HDfprintf(file_ptr, "### HDF5 metadata cache trace file version 1 ###\n"); - - if(H5C_set_trace_file_ptr(cache_ptr, file_ptr) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5C_set_trace_file_ptr() failed.") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__open_trace_file() */ - - -/*------------------------------------------------------------------------- * * Function: H5AC_get_entry_ptr_from_addr() * diff --git a/src/H5AClog.c b/src/H5AClog.c deleted file mode 100644 index 51a2050..0000000 --- a/src/H5AClog.c +++ /dev/null @@ -1,1105 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * - * If you do not have access to either file, you may request a copy from * - * help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/*------------------------------------------------------------------------- - * - * Created: H5AClog.c - * - * Purpose: Functions for metadata cache logging in JSON format - * - *------------------------------------------------------------------------- - */ - -/****************/ -/* Module Setup */ -/****************/ -#include "H5ACmodule.h" /* This source code file is part of the H5AC module */ - -/***********/ -/* Headers */ -/***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5ACpkg.h" /* Metadata cache */ -#include "H5Cprivate.h" /* Cache */ -#include "H5Eprivate.h" /* Error handling */ - - -/****************/ -/* Local Macros */ -/****************/ - -#define MSG_SIZE 128 - - -/******************/ -/* Local Typedefs */ -/******************/ - - -/********************/ -/* Package Typedefs */ -/********************/ - - -/********************/ -/* Local Prototypes */ -/********************/ - - -/*********************/ -/* Package Variables */ -/*********************/ - - -/*****************************/ -/* Library Private Variables */ -/*****************************/ - - -/*******************/ -/* Local Variables */ -/*******************/ - - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_create_cache_log_msg - * - * Purpose: Write a log message for cache creation. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_create_cache_log_msg(H5AC_t *cache) -{ - char msg[MSG_SIZE]; - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - - /* Since we're about to override the current logging flag, - * check the "log enabled" flag to see if we didn't get here - * by mistake. - */ - if(!log_enabled) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "attempt to write opening log message when logging is disabled") - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\n\ -\"create_time\":%lld,\n\ -\"messages\":\n\ -[\n\ -" - , (long long)HDtime(NULL)); - - /* Have to temporarily enable logging, if it isn't currently */ - if(!curr_logging) - if(H5C_start_logging(cache) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to start mdc logging") - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - - /* Stop logging, if it wasn't started originally */ - if(!curr_logging) - if(H5C_stop_logging(cache) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to stop mdc logging") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_create_cache_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_destroy_cache_log_msg - * - * Purpose: Write a log message for cache destruction. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_destroy_cache_log_msg(H5AC_t *cache) -{ - char msg[MSG_SIZE]; - hbool_t log_enabled; /* TRUE if logging was set up */ - hbool_t curr_logging; /* TRUE if currently logging */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - - /* Check if log messages are being emitted */ - if(H5C_get_logging_status(cache, &log_enabled, &curr_logging) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to get logging status") - - /* Since we're about to override the current logging flag, - * check the "log enabled" flag to see if we didn't get here - * by mistake. - */ - if(!log_enabled) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "attempt to write closing log message when logging is disabled") - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -],\n\ -\"close_time\":%lld,\n\ -}\n\ -" - , (long long)HDtime(NULL)); - - /* Have to temporarily enable logging, if it isn't currently */ - if(!curr_logging) - if(H5C_start_logging(cache) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to start mdc logging") - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - - /* Stop logging, if it wasn't started originally */ - if(!curr_logging) - if(H5C_stop_logging(cache) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_LOGFAIL, FAIL, "unable to stop mdc logging") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_destroy_cache_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_evict_cache_log_msg - * - * Purpose: Write a log message for eviction of cache entries. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_evict_cache_log_msg(const H5AC_t *cache, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"evict\",\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_evict_cache_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_expunge_entry_log_msg - * - * Purpose: Write a log message for expunge of cache entries. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_expunge_entry_log_msg(const H5AC_t *cache, - haddr_t address, - int type_id, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"expunge\",\ -\"address\":0x%lx,\ -\"type_id\":%d,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)address, (int)type_id, (int)fxn_ret_value); - - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_expunge_entry_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_flush_cache_log_msg - * - * Purpose: Write a log message for cache flushes. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_flush_cache_log_msg(const H5AC_t *cache, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"flush\",\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_flush_cache_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_insert_entry_log_msg - * - * Purpose: Write a log message for insertion of cache entries. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_insert_entry_log_msg(const H5AC_t *cache, - haddr_t address, - int type_id, - unsigned flags, - size_t size, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"insert\",\ -\"address\":0x%lx,\ -\"flags\":0x%x,\ -\"type_id\":%d,\ -\"size\":%d,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)address, flags, type_id, - (int)size, (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_insert_entry_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_mark_dirty_entry_log_msg - * - * Purpose: Write a log message for marking cache entries as dirty. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_mark_dirty_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(entry); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"dirty\",\ -\"address\":0x%lx,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)entry->addr, (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_mark_dirty_entry_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_mark_clean_entry_log_msg - * - * Purpose: Write a log message for marking cache entries as clean. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Quincey Koziol - * Saturday, July 23, 2016 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_mark_clean_entry_log_msg(const H5AC_t *cache, const H5AC_info_t *entry, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; /* Log message buffer */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(entry); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"clean\",\ -\"address\":0x%lx,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)entry->addr, (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_mark_clean_entry_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_mark_unserialized_entry_log_msg - * - * Purpose: Write a log message for marking cache entries as unserialized. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Quincey Koziol - * Thursday, December 22, 2016 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_mark_unserialized_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(entry); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"unserialized\",\ -\"address\":0x%lx,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)entry->addr, (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_mark_unserialized_entry_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_mark_serialize_entry_log_msg - * - * Purpose: Write a log message for marking cache entries as serialize. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Quincey Koziol - * Thursday, December 22, 2016 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_mark_serialized_entry_log_msg(const H5AC_t *cache, const H5AC_info_t *entry, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; /* Log message buffer */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(entry); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"serialized\",\ -\"address\":0x%lx,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)entry->addr, (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_mark_serialized_entry_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_move_entry_log_msg - * - * Purpose: Write a log message for moving a cache entry. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_move_entry_log_msg(const H5AC_t *cache, - haddr_t old_addr, - haddr_t new_addr, - int type_id, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"move\",\ -\"old_address\":0x%lx,\ -\"new_address\":0x%lx,\ -\"type_id\":%d,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)old_addr, - (unsigned long)new_addr, type_id, (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_move_entry_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_pin_entry_log_msg - * - * Purpose: Write a log message for pinning a cache entry. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_pin_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(entry); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"pin\",\ -\"address\":0x%lx,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)entry->addr, - (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_pin_entry_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_create_fd_log_msg - * - * Purpose: Write a log message for creating a flush dependency between - * two cache entries. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_create_fd_log_msg(const H5AC_t *cache, - const H5AC_info_t *parent, - const H5AC_info_t *child, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(parent); - HDassert(child); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"create_fd\",\ -\"parent_addr\":0x%lx,\ -\"child_addr\":0x%lx,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)parent->addr, - (unsigned long)child->addr, (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_create_fd_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_protect_entry_log_msg - * - * Purpose: Write a log message for protecting a cache entry. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_protect_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - unsigned flags, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - char rw_s[16]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(entry); - - if(H5AC__READ_ONLY_FLAG == flags) - HDstrcpy(rw_s, "READ"); - else - HDstrcpy(rw_s, "WRITE"); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"protect\",\ -\"address\":0x%lx,\ -\"readwrite\":\"%s\",\ -\"size\":%d,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)entry->addr, - rw_s, (int)entry->size, (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_protect_entry_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_resize_entry_log_msg - * - * Purpose: Write a log message for resizing a cache entry. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_resize_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - size_t new_size, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(entry); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"resize\",\ -\"address\":0x%lx,\ -\"new_size\":%d,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)entry->addr, - (int)new_size, (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_resize_entry_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_unpin_entry_log_msg - * - * Purpose: Write a log message for unpinning a cache entry. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_unpin_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(entry); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"unpin\",\ -\"address\":0x%lx,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)entry->addr, - (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_unpin_entry_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_destroy_fd_log_msg - * - * Purpose: Write a log message for destroying a flush dependency - * between two cache entries. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_destroy_fd_log_msg(const H5AC_t *cache, - const H5AC_info_t *parent, - const H5AC_info_t *child, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(parent); - HDassert(child); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"destroy_fd\",\ -\"parent_addr\":0x%lx,\ -\"child_addr\":0x%lx,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)parent->addr, - (unsigned long)child->addr, (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_destroy_fd_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_unprotect_entry_log_msg - * - * Purpose: Write a log message for unprotecting a cache entry. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_unprotect_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - int type_id, - unsigned flags, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(entry); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"unprotect\",\ -\"address\":0x%lx,\ -\"id\":%d,\ -\"flags\":%x,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)entry->addr, - type_id, flags, (int)fxn_ret_value); - - HDsnprintf(msg, MSG_SIZE, " "); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_unprotect_entry_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_set_cache_config_log_msg - * - * Purpose: Write a log message for setting the cache configuration. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_set_cache_config_log_msg(const H5AC_t *cache, - const H5AC_cache_config_t *config, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(config); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"set_config\",\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (int)fxn_ret_value); - - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_set_cache_config_log_msg() */ - - -/*------------------------------------------------------------------------- - * Function: H5AC__write_remove_entry_log_msg - * - * Purpose: Write a log message for removing a cache entry. - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Quincey Koziol - * September 17, 2016 - * - *------------------------------------------------------------------------- - */ -herr_t -H5AC__write_remove_entry_log_msg(const H5AC_t *cache, const H5AC_info_t *entry, - herr_t fxn_ret_value) -{ - char msg[MSG_SIZE]; - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity checks */ - HDassert(cache); - HDassert(entry); - - /* Create the log message string */ - HDsnprintf(msg, MSG_SIZE, -"\ -{\ -\"timestamp\":%lld,\ -\"action\":\"remove\",\ -\"address\":0x%lx,\ -\"returned\":%d\ -},\n\ -" - , (long long)HDtime(NULL), (unsigned long)entry->addr, - (int)fxn_ret_value); - - /* Write the log message to the file */ - if(H5C_write_log_message(cache, msg) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unable to emit log message") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5AC__write_remove_entry_log_msg() */ - diff --git a/src/H5ACpkg.h b/src/H5ACpkg.h index 9bf84bf..8997382 100644 --- a/src/H5ACpkg.h +++ b/src/H5ACpkg.h @@ -433,74 +433,5 @@ H5_DLL herr_t H5AC__set_write_done_callback(H5C_t * cache_ptr, void (* write_done)(void)); #endif /* H5_HAVE_PARALLEL */ -/* Trace file routines */ -H5_DLL herr_t H5AC__close_trace_file(H5AC_t *cache_ptr); -H5_DLL herr_t H5AC__open_trace_file(H5AC_t *cache_ptr, const char *trace_file_name); - -/* Cache logging routines */ -H5_DLL herr_t H5AC__write_create_cache_log_msg(H5AC_t *cache); -H5_DLL herr_t H5AC__write_destroy_cache_log_msg(H5AC_t *cache); -H5_DLL herr_t H5AC__write_evict_cache_log_msg(const H5AC_t *cache, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_expunge_entry_log_msg(const H5AC_t *cache, - haddr_t address, - int type_id, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_flush_cache_log_msg(const H5AC_t *cache, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_insert_entry_log_msg(const H5AC_t *cache, - haddr_t address, - int type_id, - unsigned flags, - size_t size, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_mark_dirty_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_mark_clean_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_mark_unserialized_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_mark_serialized_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_move_entry_log_msg(const H5AC_t *cache, - haddr_t old_addr, - haddr_t new_addr, - int type_id, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_pin_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_create_fd_log_msg(const H5AC_t *cache, - const H5AC_info_t *parent, - const H5AC_info_t *child, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_protect_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - unsigned flags, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_resize_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - size_t new_size, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_unpin_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_destroy_fd_log_msg(const H5AC_t *cache, - const H5AC_info_t *parent, - const H5AC_info_t *child, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_unprotect_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - int type_id, - unsigned flags, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_set_cache_config_log_msg(const H5AC_t *cache, - const H5AC_cache_config_t *config, - herr_t fxn_ret_value); -H5_DLL herr_t H5AC__write_remove_entry_log_msg(const H5AC_t *cache, - const H5AC_info_t *entry, - herr_t fxn_ret_value); - #endif /* _H5ACpkg_H */ diff --git a/src/H5ACprivate.h b/src/H5ACprivate.h index 99cc0e9..7d2d4ad 100644 --- a/src/H5ACprivate.h +++ b/src/H5ACprivate.h @@ -35,12 +35,6 @@ #include "H5Pprivate.h" /* Property lists */ #include "H5SLprivate.h" /* Skip lists */ -#ifdef H5_METADATA_TRACE_FILE -#define H5AC__TRACE_FILE_ENABLED 1 -#else /* H5_METADATA_TRACE_FILE */ -#define H5AC__TRACE_FILE_ENABLED 0 -#endif /* H5_METADATA_TRACE_FILE */ - /* Global metadata tag values */ #define H5AC__INVALID_TAG (haddr_t)0 #define H5AC__IGNORE_TAG (haddr_t)1 diff --git a/src/H5Adense.c b/src/H5Adense.c index 3701022..40a7a9a 100644 --- a/src/H5Adense.c +++ b/src/H5Adense.c @@ -302,20 +302,51 @@ static herr_t H5A__dense_fnd_cb(const H5A_t *attr, hbool_t *took_ownership, void *_user_attr) { H5A_t const **user_attr = (H5A_t const **)_user_attr; /* User data from v2 B-tree attribute lookup */ + herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_NOERR + FUNC_ENTER_STATIC /* * Check arguments. */ HDassert(attr); HDassert(user_attr); + HDassert(took_ownership); + /* + * If there is an attribute already stored in "user_attr", + * we need to free the dynamially allocated spaces for the + * attribute, otherwise we got infinite loop closing library due to + * outstanding allocation. (HDFFV-10659) + * + * This callback is used by H5A__dense_remove() to close/free the + * attribute stored in "user_attr" (via H5O__msg_free_real()) after + * the attribute node is deleted from the name index v2 B-tree. + * The issue is: + * When deleting the attribute node from the B-tree, + * if the attribute is found in the intermediate B-tree nodes, + * which may be merged/redistributed, we need to free the dynamically + * allocated spaces for the intermediate decoded attribute. + */ + if(*user_attr != NULL) { + H5A_t *old_attr = *user_attr; + if(old_attr->shared) { + /* Free any dynamically allocated items */ + if(H5A__free(old_attr) < 0) + HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release attribute info") + + /* Destroy shared attribute struct */ + old_attr->shared = H5FL_FREE(H5A_shared_t, old_attr->shared); + } /* end if */ + + old_attr = H5FL_FREE(H5A_t, old_attr); + } /* end if */ /* Take over attribute ownership */ *user_attr = attr; *took_ownership = TRUE; - FUNC_LEAVE_NOAPI(SUCCEED) +done: + FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__dense_fnd_cb() */ diff --git a/src/H5Adeprec.c b/src/H5Adeprec.c index 9b592b0..99c1c0c 100644 --- a/src/H5Adeprec.c +++ b/src/H5Adeprec.c @@ -340,7 +340,7 @@ H5Aget_num_attrs(hid_t loc_id) } /*lint !e788 All appropriate cases are covered */ /* Look up the # of attributes for the object */ - if((ret_value = H5A__get_num_attrs(loc)) < 0) + if((ret_value = H5O__attr_count(loc)) < 0) HGOTO_ERROR(H5E_ATTR, H5E_CANTCOUNT, FAIL, "can't get attribute count for object") done: diff --git a/src/H5Aint.c b/src/H5Aint.c index 55560c7..807c67e 100644 --- a/src/H5Aint.c +++ b/src/H5Aint.c @@ -87,8 +87,6 @@ typedef struct { /* Local Prototypes */ /********************/ -static H5A_t *H5A__create_common(const H5G_loc_t *loc, const char *name, - const H5T_t *type, const H5S_t *space, hid_t acpl_id); static herr_t H5A__open_common(const H5G_loc_t *loc, H5A_t *attr); static herr_t H5A__compact_build_table_cb(H5O_t *oh, H5O_mesg_t *mesg/*in,out*/, unsigned sequence, unsigned *oh_flags_ptr, void *_udata/*in,out*/); @@ -127,7 +125,7 @@ H5FL_SEQ_DEFINE(H5A_t_ptr); /*------------------------------------------------------------------------- - * Function: H5A__create_common + * Function: H5A__create * * Purpose: This is the guts of creating an attribute. * @@ -138,8 +136,8 @@ H5FL_SEQ_DEFINE(H5A_t_ptr); * *------------------------------------------------------------------------- */ -static H5A_t * -H5A__create_common(const H5G_loc_t *loc, const char *name, const H5T_t *type, +H5A_t * +H5A__create(const H5G_loc_t *loc, const char *name, const H5T_t *type, const H5S_t *space, hid_t acpl_id) { H5A_t *attr = NULL; /* Attribute created */ @@ -148,7 +146,7 @@ H5A__create_common(const H5G_loc_t *loc, const char *name, const H5T_t *type, htri_t exists; /* Whether attribute exists */ H5A_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_STATIC_TAG(loc->oloc->addr) + FUNC_ENTER_PACKAGE_TAG(loc->oloc->addr) /* Check args */ HDassert(loc); @@ -285,45 +283,6 @@ done: HDONE_ERROR(H5E_ATTR, H5E_CANTFREE, NULL, "can't close attribute") FUNC_LEAVE_NOAPI_TAG(ret_value) -} /* H5A__create_common() */ - - -/*------------------------------------------------------------------------- - * Function: H5A__create - * - * Purpose: Entry point for creating attribute on an object - * - * Note: This routine is needed so that there's a non-API routine for - * creating attributes that can set up VOL / SWMR info - * (which need a DXPL). - * - * Return: Attribute structure on success, NULL on Failure. - * - * Programmer: Quincey Koziol - * December 6, 2017 - * - *------------------------------------------------------------------------- - */ -H5A_t * -H5A__create(const H5G_loc_t *loc, const char *name, const H5T_t *type, - const H5S_t *space, hid_t acpl_id) -{ - H5A_t *ret_value = NULL; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check args */ - HDassert(loc); - HDassert(name); - HDassert(type); - HDassert(space); - - /* Go do the real work for attaching the attribute to the object */ - if(NULL == (ret_value = H5A__create_common(loc, name, type, space, acpl_id))) - HGOTO_ERROR(H5E_ATTR, H5E_CANTCREATE, NULL, "unable to create attribute") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) } /* H5A__create() */ @@ -350,7 +309,7 @@ H5A__create_by_name(const H5G_loc_t *loc, const char *obj_name, const char *attr H5A_t *attr = NULL; /* Attribute from object header */ H5A_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* check args */ HDassert(loc); @@ -368,8 +327,8 @@ H5A__create_by_name(const H5G_loc_t *loc, const char *obj_name, const char *attr loc_found = TRUE; /* Go do the real work for attaching the attribute to the object */ - if(NULL == (attr = H5A__create_common(&obj_loc, attr_name, type, space, acpl_id))) - HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, NULL, "unable to create attribute") + if(NULL == (attr = H5A__create(&obj_loc, attr_name, type, space, acpl_id))) + HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, NULL, "unable to create attribute") /* Set return value */ ret_value = attr; @@ -384,7 +343,7 @@ done: if(attr && H5A__close(attr) < 0) HDONE_ERROR(H5E_ATTR, H5E_CANTFREE, NULL, "can't close attribute") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5A__create_by_name() */ @@ -450,10 +409,6 @@ done: * * Purpose: Open an attribute in an object header * - * Note: This routine is needed so that there's a non-API routine for - * creating attributes that can set up VOL / SWMR info - * (which need a DXPL). - * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol @@ -467,7 +422,7 @@ H5A__open(const H5G_loc_t *loc, const char *attr_name) H5A_t *attr = NULL; /* Attribute from object header */ H5A_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* check args */ HDassert(loc); @@ -490,7 +445,7 @@ done: if(attr && H5A__close(attr) < 0) HDONE_ERROR(H5E_ATTR, H5E_CANTFREE, NULL, "can't close attribute") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5A__open() */ @@ -517,7 +472,7 @@ H5A__open_by_idx(const H5G_loc_t *loc, const char *obj_name, H5_index_t idx_type H5A_t *attr = NULL; /* Attribute from object header */ H5A_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* check args */ HDassert(loc); @@ -554,7 +509,7 @@ done: if(attr && H5A__close(attr) < 0) HDONE_ERROR(H5E_ATTR, H5E_CANTFREE, NULL, "can't close attribute") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5A__open_by_idx() */ @@ -580,7 +535,7 @@ H5A__open_by_name(const H5G_loc_t *loc, const char *obj_name, const char *attr_n H5A_t *attr = NULL; /* Attribute from object header */ H5A_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* check args */ HDassert(loc); @@ -618,7 +573,7 @@ done: if(attr && H5A__close(attr) < 0) HDONE_ERROR(H5E_ATTR, H5E_CANTFREE, NULL, "can't close attribute") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5A__open_by_name() */ @@ -652,7 +607,7 @@ H5A__read(const H5A_t *attr, const H5T_t *mem_type, void *buf) size_t buf_size; /* desired buffer size */ herr_t ret_value = SUCCEED; - FUNC_ENTER_PACKAGE_VOL_TAG(attr->oloc.addr) + FUNC_ENTER_PACKAGE_TAG(attr->oloc.addr) HDassert(attr); HDassert(mem_type); @@ -721,7 +676,7 @@ done: if(bkg_buf) bkg_buf = H5FL_BLK_FREE(attr_buf, bkg_buf); - FUNC_LEAVE_NOAPI_VOL_TAG(ret_value) + FUNC_LEAVE_NOAPI_TAG(ret_value) } /* H5A__read() */ @@ -756,7 +711,7 @@ H5A__write(H5A_t *attr, const H5T_t *mem_type, const void *buf) size_t buf_size; /* desired buffer size */ herr_t ret_value = SUCCEED; - FUNC_ENTER_PACKAGE_VOL_TAG(attr->oloc.addr) + FUNC_ENTER_PACKAGE_TAG(attr->oloc.addr) HDassert(attr); HDassert(mem_type); @@ -835,7 +790,7 @@ done: if(bkg_buf) bkg_buf = H5FL_BLK_FREE(attr_buf, bkg_buf); - FUNC_LEAVE_NOAPI_VOL_TAG(ret_value) + FUNC_LEAVE_NOAPI_TAG(ret_value) } /* H5A__write() */ @@ -939,7 +894,7 @@ H5A__get_type(H5A_t *attr) H5T_t *dt = NULL; hid_t ret_value = H5I_INVALID_HID; - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE HDassert(attr); @@ -970,7 +925,7 @@ done: if(H5I_INVALID_HID == ret_value && dt && (H5T_close(dt) < 0)) HDONE_ERROR(H5E_ATTR, H5E_CLOSEERROR, H5I_INVALID_HID, "unable to release datatype") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__get_type() */ @@ -1192,7 +1147,7 @@ H5A__close_cb(H5A_t *attr) { herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(attr); @@ -1203,7 +1158,7 @@ H5A__close_cb(H5A_t *attr) HGOTO_ERROR(H5E_ATTR, H5E_CANTCLOSEOBJ, FAIL, "problem closing attribute") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5A__close_cb() */ @@ -1355,39 +1310,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5A__exists - * - * Purpose: Private version of H5Aexists - * - * Note: This routine is needed so that there's a non-API routine for - * detecting attributes that can set up VOL / SWMR info - * (which need a DXPL). - * - * Return: Success: TRUE/FALSE - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 6, 2017 - * - *------------------------------------------------------------------------- - */ -htri_t -H5A__exists(const H5G_loc_t *loc, const char *name) -{ - htri_t ret_value = FAIL; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check if the attribute exists */ - if((ret_value = H5O__attr_exists(loc->oloc, name)) < 0) - HGOTO_ERROR(H5E_ATTR, H5E_CANTGET, FAIL, "unable to determine if attribute exists") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* H5A__exists() */ - - -/*------------------------------------------------------------------------- * Function: H5A__exists_by_name * * Purpose: Private version of H5Aexists_by_name @@ -1409,7 +1331,7 @@ H5A__exists_by_name(H5G_loc_t loc, const char *obj_name, const char *attr_name) hbool_t loc_found = FALSE; /* Entry at 'obj_name' found */ htri_t ret_value = FAIL; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Set up opened group location to fill in */ obj_loc.oloc = &obj_oloc; @@ -1430,7 +1352,7 @@ done: if(loc_found && H5G_loc_free(&obj_loc) < 0) HDONE_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't free location") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5A__exists_by_name() */ @@ -2599,39 +2521,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5A__rename - * - * Purpose: Private version of H5Arename - * - * Note: This routine is needed so that there's a non-API routine for - * renaming attributes that can set up VOL / SWMR info - * (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 6, 2017 - * - *------------------------------------------------------------------------- - */ -herr_t -H5A__rename(const H5G_loc_t *loc, const char *old_name, const char *new_name) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Call object header attribute rename routine */ - if(H5O__attr_rename(loc->oloc, old_name, new_name) < 0) - HGOTO_ERROR(H5E_ATTR, H5E_CANTRENAME, FAIL, "can't rename attribute") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* H5A__rename() */ - - -/*------------------------------------------------------------------------- * Function: H5A__rename_by_name * * Purpose: Private version of H5Arename_by_name @@ -2654,7 +2543,7 @@ H5A__rename_by_name(H5G_loc_t loc, const char *obj_name, const char *old_attr_na hbool_t loc_found = FALSE; /* Entry at 'obj_name' found */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Set up opened group location to fill in */ obj_loc.oloc = &obj_oloc; @@ -2675,44 +2564,9 @@ done: if(loc_found && H5G_loc_free(&obj_loc) < 0) HDONE_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't free location") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5A__rename_by_name() */ -#ifndef H5_NO_DEPRECATED_SYMBOLS - -/*------------------------------------------------------------------------- - * Function: H5A__get_num_attrs - * - * Purpose: Private version of deprecated H5Aget_num_attrs - * - * Note: This routine is needed so that there's a non-API routine for - * querying the attribute count that can set up VOL / SWMR info - * (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 6, 2017 - * - *------------------------------------------------------------------------- - */ -int -H5A__get_num_attrs(const H5O_loc_t *loc) -{ - int ret_value = FAIL; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Look up the # of attributes for the object */ - if((ret_value = H5O__attr_count(loc)) < 0) - HGOTO_ERROR(H5E_ATTR, H5E_CANTCOUNT, FAIL, "can't get attribute count for object") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* H5A__get_num_attrs() */ -#endif /* H5_NO_DEPRECATED_SYMBOLS */ - /*------------------------------------------------------------------------- * Function: H5A__iterate_common @@ -2755,10 +2609,6 @@ H5A__iterate_common(hid_t loc_id, H5_index_t idx_type, H5_iter_order_t order, * * Purpose: Private version of H5Aiterate2 * - * Note: This routine is needed so that there's a non-API routine for - * iterating over attributes that can set up VOL / SWMR info - * (which need a DXPL). - * * Return: Success: Non-negative * Failure: Negative * @@ -2774,7 +2624,7 @@ H5A__iterate(hid_t loc_id, H5_index_t idx_type, H5_iter_order_t order, H5A_attr_iter_op_t attr_op; /* Attribute operator */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Build attribute operator info */ attr_op.op_type = H5A_ATTR_OP_APP2; @@ -2785,7 +2635,7 @@ H5A__iterate(hid_t loc_id, H5_index_t idx_type, H5_iter_order_t order, HGOTO_ERROR(H5E_ATTR, H5E_BADITER, FAIL, "error iterating over attributes") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5A__iterate() */ #ifndef H5_NO_DEPRECATED_SYMBOLS @@ -2811,7 +2661,7 @@ H5A__iterate_old(hid_t loc_id, unsigned *attr_num, H5A_operator1_t op, hsize_t idx; /* Index of attribute to start iterating at */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Build attribute operator info */ attr_op.op_type = H5A_ATTR_OP_APP; @@ -2829,7 +2679,7 @@ H5A__iterate_old(hid_t loc_id, unsigned *attr_num, H5A_operator1_t op, *attr_num = (unsigned)idx; done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5A__iterate_old() */ #endif /* H5_NO_DEPRECATED_SYMBOLS */ @@ -2839,10 +2689,6 @@ done: * * Purpose: Private version of H5Aiterate_by_name * - * Note: This routine is needed so that there's a non-API routine for - * iterating over attributes that can set up VOL / SWMR info - * (which need a DXPL). - * * Return: Success: Non-negative * Failure: Negative * @@ -2863,7 +2709,7 @@ H5A__iterate_by_name(const H5G_loc_t *loc, const char *obj_name, H5_index_t idx_ H5A_attr_iter_op_t attr_op; /* Attribute operator */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Set up opened group location to fill in */ obj_loc.oloc = &obj_oloc; @@ -2896,44 +2742,11 @@ done: else if(loc_found && H5G_loc_free(&obj_loc) < 0) HDONE_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't free location") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5A__iterate_by_name() */ /*------------------------------------------------------------------------- - * Function: H5A__delete - * - * Purpose: Private version of H5Adelete - * - * Note: This routine is needed so that there's a non-API routine for - * deleting attributes that can set up VOL / SWMR info - * (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 6, 2017 - * - *------------------------------------------------------------------------- - */ -herr_t -H5A__delete(const H5G_loc_t *loc, const char *name) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Call object header attribute delete attribute routine */ - if(H5O__attr_remove(loc->oloc, name) < 0) - HGOTO_ERROR(H5E_ATTR, H5E_CANTDELETE, FAIL, "unable to delete attribute") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* H5A__delete() */ - - -/*------------------------------------------------------------------------- * Function: H5A__delete_by_name * * Purpose: Private version of H5Adelete_by_name @@ -2955,7 +2768,7 @@ H5A__delete_by_name(const H5G_loc_t *loc, const char *obj_name, const char *attr hbool_t loc_found = FALSE; /* Entry at 'obj_name' found */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Set up opened group location to fill in */ obj_loc.oloc = &obj_oloc; @@ -2976,7 +2789,7 @@ done: if(loc_found && H5G_loc_free(&obj_loc) < 0) HDONE_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't free location") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5A__delete_by_name() */ @@ -3003,7 +2816,7 @@ H5A__delete_by_idx(const H5G_loc_t *loc, const char *obj_name, H5_index_t idx_ty hbool_t loc_found = FALSE; /* Entry at 'obj_name' found */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Set up opened group location to fill in */ obj_loc.oloc = &obj_oloc; @@ -3024,6 +2837,6 @@ done: if(loc_found && H5G_loc_free(&obj_loc) < 0) HDONE_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't free location") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5A__delete_by_idx() */ diff --git a/src/H5Apkg.h b/src/H5Apkg.h index af16b55..0bb6d8f 100644 --- a/src/H5Apkg.h +++ b/src/H5Apkg.h @@ -200,13 +200,8 @@ H5_DLL herr_t H5A__close(H5A_t *attr); H5_DLL herr_t H5A__close_cb(H5A_t *attr); H5_DLL htri_t H5A__get_ainfo(H5F_t *f, H5O_t *oh, H5O_ainfo_t *ainfo); H5_DLL herr_t H5A__set_version(const H5F_t *f, H5A_t *attr); -H5_DLL herr_t H5A__rename(const H5G_loc_t *loc, const char *old_name, - const char *new_name); H5_DLL herr_t H5A__rename_by_name(H5G_loc_t loc, const char *obj_name, const char *old_attr_name, const char *new_attr_name); -#ifndef H5_NO_DEPRECATED_SYMBOLS -H5_DLL int H5A__get_num_attrs(const H5O_loc_t *loc); -#endif /* H5_NO_DEPRECATED_SYMBOLS */ H5_DLL herr_t H5A__iterate(hid_t loc_id, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data); H5_DLL herr_t H5A__iterate_by_name(const H5G_loc_t *loc, const char *obj_name, @@ -216,12 +211,10 @@ H5_DLL herr_t H5A__iterate_by_name(const H5G_loc_t *loc, const char *obj_name, H5_DLL herr_t H5A__iterate_old(hid_t loc_id, unsigned *attr_num, H5A_operator1_t op, void *op_data); #endif /* H5_NO_DEPRECATED_SYMBOLS */ -H5_DLL herr_t H5A__delete(const H5G_loc_t *loc, const char *name); H5_DLL herr_t H5A__delete_by_name(const H5G_loc_t *loc, const char *obj_name, const char *attr_name); H5_DLL herr_t H5A__delete_by_idx(const H5G_loc_t *loc, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n); -H5_DLL htri_t H5A__exists(const H5G_loc_t *loc, const char *name); H5_DLL htri_t H5A__exists_by_name(H5G_loc_t loc, const char *obj_name, const char *attr_name); H5_DLL herr_t H5A__write(H5A_t *attr, const H5T_t *mem_type, const void *buf); H5_DLL herr_t H5A__read(const H5A_t *attr, const H5T_t *mem_type, void *buf); diff --git a/src/H5B2private.h b/src/H5B2private.h index 83a5272..0b64381 100644 --- a/src/H5B2private.h +++ b/src/H5B2private.h @@ -25,9 +25,6 @@ #ifndef _H5B2private_H #define _H5B2private_H -/* Include package's public header */ -#include "H5B2public.h" - /* Private headers needed by this file */ #include "H5ACprivate.h" /* Metadata cache */ #include "H5Fprivate.h" /* File access */ diff --git a/src/H5B2public.h b/src/H5B2public.h deleted file mode 100644 index 6e0b964..0000000 --- a/src/H5B2public.h +++ /dev/null @@ -1,52 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * - * If you do not have access to either file, you may request a copy from * - * help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/*------------------------------------------------------------------------- - * - * Created: H5B2public.h - * Jan 31 2005 - * Quincey Koziol <koziol@ncsa.uiuc.edu> - * - * Purpose: Public declarations for the v2 B-tree package. - * - *------------------------------------------------------------------------- - */ - -#ifndef _H5B2public_H -#define _H5B2public_H - -/* Public headers needed by this file */ -#include "H5public.h" - -/*****************/ -/* Public Macros */ -/*****************/ - -/*******************/ -/* Public Typedefs */ -/*******************/ - -/**********************************/ -/* Public API Function Prototypes */ -/**********************************/ - -#ifdef __cplusplus -extern "C" { -#endif - -#ifdef __cplusplus -} -#endif - -#endif /* _H5B2public_H */ - diff --git a/src/H5Bprivate.h b/src/H5Bprivate.h index e203b87..5aa3628 100644 --- a/src/H5Bprivate.h +++ b/src/H5Bprivate.h @@ -27,7 +27,6 @@ #ifndef _H5Bprivate_H #define _H5Bprivate_H -#include "H5Bpublic.h" /*API prototypes */ /* Private headers needed by this file */ #include "H5private.h" /* Generic Functions */ diff --git a/src/H5Bpublic.h b/src/H5Bpublic.h deleted file mode 100644 index 1764f61..0000000 --- a/src/H5Bpublic.h +++ /dev/null @@ -1,39 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * - * If you do not have access to either file, you may request a copy from * - * help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/*------------------------------------------------------------------------- - * - * Created: H5Bproto.h - * Jul 10 1997 - * Robb Matzke <matzke@llnl.gov> - * - * Purpose: Public declarations for the H5B package. - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -#ifndef _H5Bpublic_H -#define _H5Bpublic_H - -/* Public headers needed by this file */ -#include "H5public.h" - -#ifdef __cplusplus -extern "C" { -#endif - -#ifdef __cplusplus -} -#endif -#endif @@ -282,13 +282,8 @@ H5C_create(size_t max_cache_size, cache_ptr->flush_in_progress = FALSE; - cache_ptr->logging_enabled = FALSE; - - cache_ptr->currently_logging = FALSE; - - cache_ptr->log_file_ptr = NULL; - - cache_ptr->trace_file_ptr = NULL; + if(NULL == (cache_ptr->log_info = (H5C_log_info_t *)H5MM_calloc(sizeof(H5C_log_info_t)))) + HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, NULL, "memory allocation failed") cache_ptr->aux_ptr = aux_ptr; @@ -332,6 +327,7 @@ H5C_create(size_t max_cache_size, /* Tagging Field Initializations */ cache_ptr->ignore_tags = FALSE; + cache_ptr->num_objs_corked = 0; cache_ptr->slist_changed = FALSE; cache_ptr->slist_len = 0; @@ -493,6 +489,9 @@ done: if(cache_ptr->tag_list != NULL) H5SL_close(cache_ptr->tag_list); + if(cache_ptr->log_info != NULL) + H5MM_xfree(cache_ptr->log_info); + cache_ptr->magic = 0; cache_ptr = H5FL_FREE(H5C_t, cache_ptr); } /* end if */ @@ -865,6 +864,9 @@ H5C_dest(H5F_t * f) cache_ptr->tag_list = NULL; } /* end if */ + if(cache_ptr->log_info != NULL) + H5MM_xfree(cache_ptr->log_info); + #ifndef NDEBUG #if H5C_DO_SANITY_CHECKS if(cache_ptr->get_entry_ptr_from_addr_counter > 0) @@ -1481,31 +1483,17 @@ H5C_insert_entry(H5F_t * f, H5C__UPDATE_STATS_FOR_INSERTION(cache_ptr, entry_ptr) #ifdef H5_HAVE_PARALLEL - if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) { - coll_access = (H5P_USER_TRUE == f->coll_md_read ? TRUE : FALSE); - - /* If not explicitly disabled, get the cmdr setting from the API context */ - if(!coll_access && H5P_FORCE_FALSE != f->coll_md_read) - coll_access = H5CX_get_coll_metadata_read(); - } /* end if */ + if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) + coll_access = H5CX_get_coll_metadata_read(); entry_ptr->coll_access = coll_access; if(coll_access) { H5C__INSERT_IN_COLL_LIST(cache_ptr, entry_ptr, FAIL) /* Make sure the size of the collective entries in the cache remain in check */ - if(H5P_USER_TRUE == f->coll_md_read) { - if(cache_ptr->max_cache_size * 80 < cache_ptr->coll_list_size * 100) { - if(H5C_clear_coll_entries(cache_ptr, TRUE) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't clear collective metadata entries") - } /* end if */ - } /* end if */ - else { - if(cache_ptr->max_cache_size * 40 < cache_ptr->coll_list_size * 100) { - if(H5C_clear_coll_entries(cache_ptr, TRUE) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't clear collective metadata entries") - } /* end if */ - } /* end else */ + if(cache_ptr->max_cache_size * 80 < cache_ptr->coll_list_size * 100) + if(H5C_clear_coll_entries(cache_ptr, TRUE) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't clear collective metadata entries") } /* end if */ #endif @@ -2241,13 +2229,8 @@ H5C_protect(H5F_t * f, ring = H5CX_get_ring(); #ifdef H5_HAVE_PARALLEL - if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) { - coll_access = (H5P_USER_TRUE == f->coll_md_read ? TRUE : FALSE); - - /* If not explicitly disabled, get the cmdr setting from the API context */ - if(!coll_access && H5P_FORCE_FALSE != f->coll_md_read) - coll_access = H5CX_get_coll_metadata_read(); - } /* end if */ + if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) + coll_access = H5CX_get_coll_metadata_read(); #endif /* H5_HAVE_PARALLEL */ /* first check to see if the target is in cache */ @@ -2284,7 +2267,7 @@ H5C_protect(H5F_t * f, the entry in their cache still have to participate in the bcast. */ #ifdef H5_HAVE_PARALLEL - if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI) && coll_access) { + if(coll_access) { if(!(entry_ptr->is_dirty) && !(entry_ptr->coll_access)) { MPI_Comm comm; /* File MPI Communicator */ int mpi_code; /* MPI error code */ @@ -2599,21 +2582,11 @@ H5C_protect(H5F_t * f, } /* end if */ #ifdef H5_HAVE_PARALLEL - if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) { - /* Make sure the size of the collective entries in the cache remain in check */ - if(coll_access) { - if(H5P_USER_TRUE == f->coll_md_read) { - if(cache_ptr->max_cache_size * 80 < cache_ptr->coll_list_size * 100) - if(H5C_clear_coll_entries(cache_ptr, TRUE) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, NULL, "can't clear collective metadata entries") - } /* end if */ - else { - if(cache_ptr->max_cache_size * 40 < cache_ptr->coll_list_size * 100) - if(H5C_clear_coll_entries(cache_ptr, TRUE) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, NULL, "can't clear collective metadata entries") - } /* end else */ - } /* end if */ - } /* end if */ + /* Make sure the size of the collective entries in the cache remain in check */ + if(coll_access) + if(cache_ptr->max_cache_size * 80 < cache_ptr->coll_list_size * 100) + if(H5C_clear_coll_entries(cache_ptr, TRUE) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, NULL, "can't clear collective metadata entries") #endif /* H5_HAVE_PARALLEL */ done: @@ -7731,6 +7704,8 @@ H5C_cork(H5C_t *cache_ptr, haddr_t obj_addr, unsigned action, hbool_t *corked) /* Set the corked status for the entire object */ tag_info->corked = TRUE; + cache_ptr->num_objs_corked++; + } /* end if */ else { /* Sanity check */ @@ -7742,6 +7717,7 @@ H5C_cork(H5C_t *cache_ptr, haddr_t obj_addr, unsigned action, hbool_t *corked) /* Set the corked status for the entire object */ tag_info->corked = FALSE; + cache_ptr->num_objs_corked--; /* Remove the tag info from the tag list, if there's no more entries with this tag */ if(0 == tag_info->entry_cnt) { @@ -198,6 +198,7 @@ typedef struct H5CX_t { MPI_Datatype btype; /* MPI datatype for buffer, when using collective I/O */ MPI_Datatype ftype; /* MPI datatype for file, when using collective I/O */ hbool_t mpi_file_flushing; /* Whether an MPI-opened file is being flushed */ + hbool_t rank0_bcast; /* Whether a dataset meets read-with-rank0-and-bcast requirements */ #endif /* H5_HAVE_PARALLEL */ /* Cached DXPL properties */ @@ -261,6 +262,8 @@ typedef struct H5CX_t { hbool_t mpio_coll_chunk_multi_ratio_coll_set; /* Whether instrumented "collective chunk multi ratio coll" value is set */ int mpio_coll_chunk_multi_ratio_ind; /* Instrumented "collective chunk multi ratio ind" value (H5D_XFER_COLL_CHUNK_MULTI_RATIO_IND_NAME) */ hbool_t mpio_coll_chunk_multi_ratio_ind_set; /* Whether instrumented "collective chunk multi ratio ind" value is set */ + hbool_t mpio_coll_rank0_bcast; /* Instrumented "collective chunk multi ratio ind" value (H5D_XFER_COLL_CHUNK_MULTI_RATIO_IND_NAME) */ + hbool_t mpio_coll_rank0_bcast_set; /* Whether instrumented "collective chunk multi ratio ind" value is set */ #endif /* H5_HAVE_INSTRUMENTED_LIBRARY */ #endif /* H5_HAVE_PARALLEL */ @@ -804,8 +807,8 @@ H5CX_set_apl(hid_t *acspl_id, const H5P_libclass_t *libclass, #ifdef H5_HAVE_PARALLEL /* If this routine is not guaranteed to be collective (i.e. it doesn't - * modify the structural metadata in a file), check if we should use - * a collective metadata read. + * modify the structural metadata in a file), check if the application + * specified a collective metadata read for just this operation. */ if(!is_collective) { H5P_genplist_t *plist; /* Property list pointer */ @@ -1106,6 +1109,32 @@ H5CX_get_mpi_file_flushing(void) FUNC_LEAVE_NOAPI((*head)->ctx.mpi_file_flushing) } /* end H5CX_get_mpi_file_flushing() */ + + +/*------------------------------------------------------------------------- + * Function: H5CX_get_mpio_rank0_bcast + * + * Purpose: Retrieves if the dataset meets read-with-rank0-and-bcast requirements for the current API call context. + * + * Return: Non-negative on success / Negative on failure + * + * Programmer: M. Breitenfeld + * December 31, 2018 + * + *------------------------------------------------------------------------- + */ +hbool_t +H5CX_get_mpio_rank0_bcast(void) +{ + H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */ + + FUNC_ENTER_NOAPI_NOINIT_NOERR + + /* Sanity check */ + HDassert(head && *head); + + FUNC_LEAVE_NOAPI((*head)->ctx.rank0_bcast) +} /* end H5CX_get_mpio_rank0_bcast() */ #endif /* H5_HAVE_PARALLEL */ @@ -2037,6 +2066,34 @@ H5CX_set_mpi_file_flushing(hbool_t flushing) FUNC_LEAVE_NOAPI_VOID } /* end H5CX_set_mpi_file_flushing() */ + + +/*------------------------------------------------------------------------- + * Function: H5CX_set_mpio_rank0_bcast + * + * Purpose: Sets the "dataset meets read-with-rank0-and-bcast requirements" flag for the current API call context. + * + * Return: <none> + * + * Programmer: M. Breitenfeld + * December 31, 2018 + * + *------------------------------------------------------------------------- + */ +void +H5CX_set_mpio_rank0_bcast(hbool_t rank0_bcast) +{ + H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */ + + FUNC_ENTER_NOAPI_NOINIT_NOERR + + /* Sanity checks */ + HDassert(head && *head); + + (*head)->ctx.rank0_bcast = rank0_bcast; + + FUNC_LEAVE_NOAPI_VOID +} /* end H5CX_set_mpio_rank0_bcast() */ #endif /* H5_HAVE_PARALLEL */ @@ -2448,6 +2505,40 @@ H5CX_test_set_mpio_coll_chunk_multi_ratio_ind(int mpio_coll_chunk_multi_ratio_in done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5CX_test_set_mpio_coll_chunk_multi_ratio_ind() */ + + +/*------------------------------------------------------------------------- + * Function: H5CX_test_set_mpio_coll_rank0_bcast + * + * Purpose: Sets the instrumented "read-with-rank0-bcast" flag for the current API call context. + * + * Note: Only sets value if property set in DXPL + * + * Return: Non-negative on success / Negative on failure + * + * Programmer: Quincey Koziol + * January 2, 2019 + * + *------------------------------------------------------------------------- + */ +herr_t +H5CX_test_set_mpio_coll_rank0_bcast(hbool_t mpio_coll_rank0_bcast) +{ + H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI_NOINIT + + /* Sanity checks */ + HDassert(head && *head); + HDassert(!((*head)->ctx.dxpl_id == H5P_DEFAULT || + (*head)->ctx.dxpl_id == H5P_DATASET_XFER_DEFAULT)); + + H5CX_TEST_SET_PROP(H5D_XFER_COLL_RANK0_BCAST_NAME, mpio_coll_rank0_bcast) + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5CX_test_set_mpio_coll_rank0_bcast() */ #endif /* H5_HAVE_INSTRUMENTED_LIBRARY */ #endif /* H5_HAVE_PARALLEL */ @@ -2488,6 +2579,7 @@ H5CX__pop_common(void) H5CX_SET_PROP(H5D_XFER_COLL_CHUNK_LINK_NUM_FALSE_NAME, mpio_coll_chunk_link_num_false) H5CX_SET_PROP(H5D_XFER_COLL_CHUNK_MULTI_RATIO_COLL_NAME, mpio_coll_chunk_multi_ratio_coll) H5CX_SET_PROP(H5D_XFER_COLL_CHUNK_MULTI_RATIO_IND_NAME, mpio_coll_chunk_multi_ratio_ind) + H5CX_SET_PROP(H5D_XFER_COLL_RANK0_BCAST_NAME, mpio_coll_rank0_bcast) #endif /* H5_HAVE_INSTRUMENTED_LIBRARY */ #endif /* H5_HAVE_PARALLEL */ diff --git a/src/H5CXprivate.h b/src/H5CXprivate.h index 44a4067..a091292 100644 --- a/src/H5CXprivate.h +++ b/src/H5CXprivate.h @@ -73,6 +73,7 @@ H5_DLL H5AC_ring_t H5CX_get_ring(void); H5_DLL hbool_t H5CX_get_coll_metadata_read(void); H5_DLL herr_t H5CX_get_mpi_coll_datatypes(MPI_Datatype *btype, MPI_Datatype *ftype); H5_DLL hbool_t H5CX_get_mpi_file_flushing(void); +H5_DLL hbool_t H5CX_get_mpio_rank0_bcast(void); #endif /* H5_HAVE_PARALLEL */ /* "Getter" routines for DXPL properties cached in API context */ @@ -108,6 +109,7 @@ H5_DLL void H5CX_set_coll_metadata_read(hbool_t cmdr); H5_DLL herr_t H5CX_set_mpi_coll_datatypes(MPI_Datatype btype, MPI_Datatype ftype); H5_DLL herr_t H5CX_set_mpio_coll_opt(H5FD_mpio_collective_opt_t mpio_coll_opt); H5_DLL void H5CX_set_mpi_file_flushing(hbool_t flushing); +H5_DLL void H5CX_set_mpio_rank0_bcast(hbool_t rank0_bcast); #endif /* H5_HAVE_PARALLEL */ /* "Setter" routines for DXPL properties cached in API context */ @@ -133,6 +135,7 @@ H5_DLL herr_t H5CX_test_set_mpio_coll_chunk_link_num_true(int mpio_coll_chunk_li H5_DLL herr_t H5CX_test_set_mpio_coll_chunk_link_num_false(int mpio_coll_chunk_link_num_false); H5_DLL herr_t H5CX_test_set_mpio_coll_chunk_multi_ratio_coll(int mpio_coll_chunk_multi_ratio_coll); H5_DLL herr_t H5CX_test_set_mpio_coll_chunk_multi_ratio_ind(int mpio_coll_chunk_multi_ratio_ind); +H5_DLL herr_t H5CX_test_set_mpio_coll_rank0_bcast(hbool_t rank0_bcast); #endif /* H5_HAVE_INSTRUMENTED_LIBRARY */ #endif /* H5_HAVE_PARALLEL */ diff --git a/src/H5Cdbg.c b/src/H5Cdbg.c index 08c70d9..1f55e86 100644 --- a/src/H5Cdbg.c +++ b/src/H5Cdbg.c @@ -476,42 +476,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5C_set_trace_file_ptr - * - * Purpose: Set the trace_file_ptr field for the cache. - * - * This field must either be NULL (which turns of trace - * file logging), or be a pointer to an open file to which - * trace file data is to be written. - * - * Return: Non-negative on success/Negative on failure - * - * Programmer: John Mainzer - * 1/20/06 - * - *------------------------------------------------------------------------- - */ -herr_t -H5C_set_trace_file_ptr(H5C_t * cache_ptr, FILE * trace_file_ptr) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* This would normally be an assert, but we need to use an HGOTO_ERROR - * call to shut up the compiler. - */ - if((NULL == cache_ptr) || (cache_ptr->magic != H5C__H5C_T_MAGIC)) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Bad cache_ptr") - - cache_ptr->trace_file_ptr = trace_file_ptr; - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5C_set_trace_file_ptr() */ - - -/*------------------------------------------------------------------------- * Function: H5C_stats * * Purpose: Prints statistics about the cache. diff --git a/src/H5Cimage.c b/src/H5Cimage.c index 26b6506..298a2dd 100644 --- a/src/H5Cimage.c +++ b/src/H5Cimage.c @@ -1065,9 +1065,9 @@ H5C__read_cache_image(H5F_t *f, H5C_t *cache_ptr) H5C__UPDATE_STATS_FOR_CACHE_IMAGE_READ(cache_ptr) #ifdef H5_HAVE_PARALLEL - if ( aux_ptr ) { + if ( aux_ptr ) { - /* Broadcast cache image */ + /* Broadcast cache image */ if ( MPI_SUCCESS != (mpi_result = MPI_Bcast(cache_ptr->image_buffer, (int)cache_ptr->image_len, MPI_BYTE, diff --git a/src/H5Clog.c b/src/H5Clog.c index 3353619..cf9b7e8 100644 --- a/src/H5Clog.c +++ b/src/H5Clog.c @@ -13,11 +13,9 @@ /*------------------------------------------------------------------------- * - * Created: H5Clog.c - * May 30 2016 - * Quincey Koziol + * Created: H5Clog.c * - * Purpose: Functions for generic cache logging in JSON format + * Purpose: Functions for metadata cache logging * *------------------------------------------------------------------------- */ @@ -30,14 +28,12 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#ifdef H5_HAVE_PARALLEL -#define H5AC_FRIEND /*suppress error about including H5ACpkg */ -#include "H5ACpkg.h" /* Metadata cache */ -#endif /* H5_HAVE_PARALLEL */ -#include "H5Cpkg.h" /* Metadata cache */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5MMprivate.h" /* Memory management */ +#include "H5private.h" /* Generic Functions */ +#define H5AC_FRIEND /* Suppress error about including H5ACpkg */ +#include "H5ACpkg.h" /* Metadata cache */ +#include "H5Cpkg.h" /* Cache */ +#include "H5Clog.h" /* Cache logging */ +#include "H5Eprivate.h" /* Error handling */ /****************/ @@ -77,133 +73,109 @@ /*------------------------------------------------------------------------- - * Function: H5C_set_up_logging + * Function: H5C_log_set_up * * Purpose: Setup for metadata cache logging. * - * Metadata logging is enabled and disabled at two levels. This - * function and the associated tear_down function open and close - * the log file. the start_ and stop_logging functions are then - * used to switch logging on/off. Optionally, logging can begin - * as soon as the log file is opened (set via the start_immediately - * parameter to this function). - * - * The log functionality is split between the H5C and H5AC - * packages. Log state and direct log manipulation resides in - * H5C. Log messages are generated in H5AC and sent to - * the H5C_write_log_message function. + * Return: SUCCEED/FAIL * - * Return: Non-negative on success/Negative on failure - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 + * Programmer: Dana Robinson + * Fall 2018 * *------------------------------------------------------------------------- */ herr_t -H5C_set_up_logging(H5C_t *cache_ptr, const char log_location[], - hbool_t start_immediately) +H5C_log_set_up(H5C_t *cache, const char log_location[], H5C_log_style_t style, hbool_t start_immediately) { -#ifdef H5_HAVE_PARALLEL - H5AC_aux_t *aux_ptr = NULL; -#endif /*H5_HAVE_PARALLEL*/ - char *file_name = NULL; - size_t n_chars; - herr_t ret_value = SUCCEED; /* Return value */ + int mpi_rank = -1; /* -1 indicates serial (no MPI rank) */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) /* Sanity checks */ - if(NULL == cache_ptr) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache_ptr == NULL") - if(H5C__H5C_T_MAGIC != cache_ptr->magic) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache magic value incorrect") - if(cache_ptr->logging_enabled) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "logging already set up") - if(NULL == log_location) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "NULL log location not allowed") - - /* Possibly fix up the log file name. - * The extra 39 characters are for adding the rank to the file name - * under parallel HDF5. 39 characters allows > 2^127 processes which - * should be enough for anybody. - * - * allocation size = <path length> + dot + <rank # length> + \0 - */ - n_chars = HDstrlen(log_location) + 1 + 39 + 1; - if(NULL == (file_name = (char *)H5MM_calloc(n_chars * sizeof(char)))) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate memory for mdc log file name manipulation") + HDassert(cache); + HDassert(log_location); + /* Check logging flags */ + if(cache->log_info->enabled) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "logging already set up") + + /* Get the rank when MPI is in use. Logging clients will usually + * use that to create per-process logs. + */ #ifdef H5_HAVE_PARALLEL - /* Add the rank to the log file name when MPI is in use */ - aux_ptr = (H5AC_aux_t *)(cache_ptr->aux_ptr); - - if(NULL == aux_ptr) - HDsnprintf(file_name, n_chars, "%s", log_location); - else { - if(aux_ptr->magic != H5AC__H5AC_AUX_T_MAGIC) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "bad aux_ptr->magic") - HDsnprintf(file_name, n_chars, "%s.%d", log_location, aux_ptr->mpi_rank); - } /* end else */ -#else /* H5_HAVE_PARALLEL */ - HDsnprintf(file_name, n_chars, "%s", log_location); -#endif /* H5_HAVE_PARALLEL */ - - /* Open log file */ - if(NULL == (cache_ptr->log_file_ptr = HDfopen(file_name, "w"))) - HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "can't create mdc log file") + if(NULL != cache->aux_ptr) + mpi_rank = ((H5AC_aux_t *)(cache->aux_ptr))->mpi_rank; +#endif /*H5_HAVE_PARALLEL*/ + + /* Set up logging */ + if(H5C_LOG_STYLE_JSON == style) { + if(H5C_log_json_set_up(cache->log_info, log_location, mpi_rank) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to set up json logging") + } + else if(H5C_LOG_STYLE_TRACE == style) { + if(H5C_log_trace_set_up(cache->log_info, log_location, mpi_rank) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to set up trace logging") + } + else + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unknown logging style") /* Set logging flags */ - cache_ptr->logging_enabled = TRUE; - cache_ptr->currently_logging = start_immediately; + cache->log_info->enabled = TRUE; + + /* Start logging if requested */ + if(start_immediately) + if(H5C_start_logging(cache) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to start logging") done: - if(file_name) - file_name = (char *)H5MM_xfree(file_name); FUNC_LEAVE_NOAPI(ret_value) -} /* H5C_set_up_logging() */ +} /* H5C_log_set_up() */ /*------------------------------------------------------------------------- - * Function: H5C_tear_down_logging + * Function: H5C_log_tear_down * * Purpose: Tear-down for metadata cache logging. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 + * Programmer: Dana Robinson + * Fall 2018 * *------------------------------------------------------------------------- */ herr_t -H5C_tear_down_logging(H5C_t *cache_ptr) +H5C_log_tear_down(H5C_t *cache) { herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) /* Sanity checks */ - if(NULL == cache_ptr) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache_ptr == NULL") - if(H5C__H5C_T_MAGIC != cache_ptr->magic) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache magic value incorrect") - if(FALSE == cache_ptr->logging_enabled) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "logging not enabled") + HDassert(cache); - /* Unset logging flags */ - cache_ptr->logging_enabled = FALSE; - cache_ptr->currently_logging = FALSE; + /* Check logging flags */ + if(FALSE == cache->log_info->enabled) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "logging not enabled") - /* Close log file */ - if(EOF == HDfclose(cache_ptr->log_file_ptr)) - HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "problem closing mdc log file") - cache_ptr->log_file_ptr = NULL; + /* Stop logging if that's going on */ + if(cache->log_info->logging) + if(H5C_stop_logging(cache) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to stop logging") + + /* Tear down logging */ + if(cache->log_info->cls->tear_down_logging) + if(cache->log_info->cls->tear_down_logging(cache->log_info) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific tear down call failed") + + /* Unset logging flags */ + cache->log_info->enabled = FALSE; done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5C_tear_down_logging() */ +} /* H5C_log_tear_down() */ /*------------------------------------------------------------------------- @@ -211,37 +183,39 @@ H5C_tear_down_logging(H5C_t *cache_ptr) * * Purpose: Start logging metadata cache operations. * - * TODO: Add a function that dumps the current state of the - * metadata cache. + * Return: SUCCEED/FAIL * - * Return: Non-negative on success/Negative on failure - * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 + * Programmer: Dana Robinson + * Fall 2018 * *------------------------------------------------------------------------- */ herr_t -H5C_start_logging(H5C_t *cache_ptr) +H5C_start_logging(H5C_t *cache) { herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) /* Sanity checks */ - if(NULL == cache_ptr) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache_ptr == NULL") - if(H5C__H5C_T_MAGIC != cache_ptr->magic) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache magic value incorrect") - if(FALSE == cache_ptr->logging_enabled) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "logging not enabled") - if(cache_ptr->currently_logging) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "logging already in progress") + HDassert(cache); + + /* Check logging flags */ + if(FALSE == cache->log_info->enabled) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "logging not enabled") + + /* Start logging */ + if(cache->log_info->cls->start_logging) + if(cache->log_info->cls->start_logging(cache->log_info) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific start call failed") /* Set logging flags */ - cache_ptr->currently_logging = TRUE; + cache->log_info->logging = TRUE; - /* TODO - Dump cache state */ + /* Write a log message */ + if(cache->log_info->cls->write_start_log_msg) + if(cache->log_info->cls->write_start_log_msg(cache->log_info->udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific write start call failed") done: FUNC_LEAVE_NOAPI(ret_value) @@ -253,32 +227,41 @@ H5C_start_logging(H5C_t *cache_ptr) * * Purpose: Stop logging metadata cache operations. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 + * Programmer: Dana Robinson + * Fall 2018 * *------------------------------------------------------------------------- */ herr_t -H5C_stop_logging(H5C_t *cache_ptr) +H5C_stop_logging(H5C_t *cache) { herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) /* Sanity checks */ - if(NULL == cache_ptr) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache_ptr == NULL") - if(H5C__H5C_T_MAGIC != cache_ptr->magic) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache magic value incorrect") - if(FALSE == cache_ptr->logging_enabled) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "logging not enabled") - if(FALSE == cache_ptr->currently_logging) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "logging not in progress") + HDassert(cache); + + /* Check logging flags */ + if(FALSE == cache->log_info->enabled) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "logging not enabled") + if(FALSE == cache->log_info->logging) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "logging not in progress") + + /* Write a log message */ + if(cache->log_info->cls->write_stop_log_msg) + if(cache->log_info->cls->write_stop_log_msg(cache->log_info->udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific write stop call failed") + + /* Stop logging */ + if(cache->log_info->cls->stop_logging) + if(cache->log_info->cls->stop_logging(cache->log_info) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific stop call failed") /* Set logging flags */ - cache_ptr->currently_logging = FALSE; + cache->log_info->logging = FALSE; done: FUNC_LEAVE_NOAPI(ret_value) @@ -289,80 +272,705 @@ H5C_stop_logging(H5C_t *cache_ptr) * Function: H5C_get_logging_status * * Purpose: Determines if the cache is actively logging (via the OUT - * parameter). + * parameters). * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 + * Programmer: Dana Robinson + * Fall 2018 * *------------------------------------------------------------------------- */ herr_t -H5C_get_logging_status(const H5C_t *cache_ptr, /*OUT*/ hbool_t *is_enabled, +H5C_get_logging_status(const H5C_t *cache, /*OUT*/ hbool_t *is_enabled, /*OUT*/ hbool_t *is_currently_logging) { - herr_t ret_value = SUCCEED; /* Return value */ + FUNC_ENTER_NOAPI_NOERR + + /* Sanity checks */ + HDassert(cache); + HDassert(is_enabled); + HDassert(is_currently_logging); + + /* Get logging flags */ + *is_enabled = cache->log_info->enabled; + *is_currently_logging = cache->log_info->logging; + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* H5C_get_logging_status() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_create_cache_msg + * + * Purpose: Write a log message for cache creation. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_create_cache_msg(H5C_t *cache, herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) /* Sanity checks */ - if(NULL == cache_ptr) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache_ptr == NULL") - if(H5C__H5C_T_MAGIC != cache_ptr->magic) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache magic value incorrect") - if(NULL == is_enabled) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache magic value incorrect") - if(NULL == is_currently_logging) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache magic value incorrect") - - *is_enabled = cache_ptr->logging_enabled; - *is_currently_logging = cache_ptr->currently_logging; + HDassert(cache); + + /* Write a log message */ + if(cache->log_info->cls->write_create_cache_log_msg) + if(cache->log_info->cls->write_create_cache_log_msg(cache->log_info->udata, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific write create cache call failed") done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5C_get_logging_status() */ +} /* H5C_log_write_create_cache_msg() */ + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_destroy_cache_msg + * + * Purpose: Write a log message for cache destruction. + * + * NOTE: This can't print out the H5AC call return value, since we + * won't know that until the cache is destroyed and at that + * point we no longer have pointers to the logging information. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_destroy_cache_msg(H5C_t *cache) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + if(cache->log_info->cls->write_destroy_cache_log_msg) + if(cache->log_info->cls->write_destroy_cache_log_msg(cache->log_info->udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific write destroy cache call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_destroy_cache_msg() */ /*------------------------------------------------------------------------- - * Function: H5C_write_log_message + * Function: H5C_log_write_evict_cache_msg * - * Purpose: Write a message to the log file and flush the file. - * The message string is neither modified nor freed. + * Purpose: Write a log message for eviction of cache entries. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * - * Programmer: Dana Robinson - * Sunday, March 16, 2014 + * Programmer: Dana Robinson + * Fall 2018 * *------------------------------------------------------------------------- */ herr_t -H5C_write_log_message(const H5C_t *cache_ptr, const char message[]) +H5C_log_write_evict_cache_msg(H5C_t *cache, herr_t fxn_ret_value) { - size_t n_chars; - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + if(cache->log_info->cls->write_evict_cache_log_msg) + if(cache->log_info->cls->write_evict_cache_log_msg(cache->log_info->udata, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific write evict cache call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_evict_cache_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_expunge_entry_msg + * + * Purpose: Write a log message for expunge of cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_expunge_entry_msg(H5C_t *cache, haddr_t address, + int type_id, herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI(FAIL) /* Sanity checks */ - if(NULL == cache_ptr) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache_ptr == NULL") - if(H5C__H5C_T_MAGIC != cache_ptr->magic) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "cache magic value incorrect") - if(FALSE == cache_ptr->currently_logging) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "not currently logging") - if(NULL == message) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "NULL log message not allowed") - - /* Write the log message and flush */ - n_chars = HDstrlen(message); - if((int)n_chars != HDfprintf(cache_ptr->log_file_ptr, message)) - HGOTO_ERROR(H5E_FILE, H5E_WRITEERROR, FAIL, "error writing log message") - if(EOF == HDfflush(cache_ptr->log_file_ptr)) - HGOTO_ERROR(H5E_FILE, H5E_WRITEERROR, FAIL, "error flushing log message") + HDassert(cache); + + /* Write a log message */ + if(cache->log_info->cls->write_expunge_entry_log_msg) + if(cache->log_info->cls->write_expunge_entry_log_msg(cache->log_info->udata, address, type_id, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific write expunge entry call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_expunge_entry_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_flush_cache_msg + * + * Purpose: Write a log message for cache flushes. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_flush_cache_msg(H5C_t *cache, herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + if(cache->log_info->cls->write_flush_cache_log_msg) + if(cache->log_info->cls->write_flush_cache_log_msg(cache->log_info->udata, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific flush cache call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_flush_cache_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_insert_entry_msg + * + * Purpose: Write a log message for insertion of cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_insert_entry_msg(H5C_t *cache, haddr_t address, + int type_id, unsigned flags, size_t size, herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + if(cache->log_info->cls->write_insert_entry_log_msg) + if(cache->log_info->cls->write_insert_entry_log_msg(cache->log_info->udata, address, type_id, flags, size, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific insert entry call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_insert_entry_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_mark_entry_dirty_msg + * + * Purpose: Write a log message for marking cache entries as dirty. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_mark_entry_dirty_msg(H5C_t *cache, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + HDassert(entry); + if(cache->log_info->cls->write_mark_entry_dirty_log_msg) + if(cache->log_info->cls->write_mark_entry_dirty_log_msg(cache->log_info->udata, entry, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific mark dirty entry call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_mark_entry_dirty_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_mark_entry_clean_msg + * + * Purpose: Write a log message for marking cache entries as clean. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_mark_entry_clean_msg(H5C_t *cache, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + HDassert(entry); + if(cache->log_info->cls->write_mark_entry_clean_log_msg) + if(cache->log_info->cls->write_mark_entry_clean_log_msg(cache->log_info->udata, entry, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific mark clean entry call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_mark_entry_clean_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_mark_unserialized_entry_msg + * + * Purpose: Write a log message for marking cache entries as unserialized. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_mark_unserialized_entry_msg(H5C_t *cache, + const H5C_cache_entry_t *entry, herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + HDassert(entry); + if(cache->log_info->cls->write_mark_unserialized_entry_log_msg) + if(cache->log_info->cls->write_mark_unserialized_entry_log_msg(cache->log_info->udata, entry, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific mark unserialized entry call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_mark_unserialized_entry_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_mark_serialized_entry_msg + * + * Purpose: Write a log message for marking cache entries as serialize. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_mark_serialized_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + HDassert(entry); + if(cache->log_info->cls->write_mark_serialized_entry_log_msg) + if(cache->log_info->cls->write_mark_serialized_entry_log_msg(cache->log_info->udata, entry, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific mark serialized entry call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_mark_serialized_entry_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_move_entry_msg + * + * Purpose: Write a log message for moving a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_move_entry_msg(H5C_t *cache, haddr_t old_addr, haddr_t new_addr, + int type_id, herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + if(cache->log_info->cls->write_move_entry_log_msg) + if(cache->log_info->cls->write_move_entry_log_msg(cache->log_info->udata, old_addr, new_addr, type_id, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific move entry call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_move_entry_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_pin_entry_msg + * + * Purpose: Write a log message for pinning a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_pin_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + HDassert(entry); + if(cache->log_info->cls->write_pin_entry_log_msg) + if(cache->log_info->cls->write_pin_entry_log_msg(cache->log_info->udata, entry, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific pin entry call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_pin_entry_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_create_fd_msg + * + * Purpose: Write a log message for creating a flush dependency between + * two cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_create_fd_msg(H5C_t *cache, const H5C_cache_entry_t *parent, + const H5C_cache_entry_t *child, herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + HDassert(parent); + HDassert(child); + if(cache->log_info->cls->write_create_fd_log_msg) + if(cache->log_info->cls->write_create_fd_log_msg(cache->log_info->udata, parent, child, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific create fd call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_create_fd_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_protect_entry_msg + * + * Purpose: Write a log message for protecting a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_protect_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, + int type_id, unsigned flags, herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + HDassert(entry); + if(cache->log_info->cls->write_protect_entry_log_msg) + if(cache->log_info->cls->write_protect_entry_log_msg(cache->log_info->udata, entry, type_id, flags, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific protect entry call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_protect_entry_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_resize_entry_msg + * + * Purpose: Write a log message for resizing a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_resize_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, + size_t new_size, herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + HDassert(entry); + if(cache->log_info->cls->write_resize_entry_log_msg) + if(cache->log_info->cls->write_resize_entry_log_msg(cache->log_info->udata, entry, new_size, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific resize entry call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_resize_entry_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_unpin_entry_msg + * + * Purpose: Write a log message for unpinning a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_unpin_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + HDassert(entry); + if(cache->log_info->cls->write_unpin_entry_log_msg) + if(cache->log_info->cls->write_unpin_entry_log_msg(cache->log_info->udata, entry, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific unpin entry call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_unpin_entry_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_destroy_fd_msg + * + * Purpose: Write a log message for destroying a flush dependency + * between two cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_destroy_fd_msg(H5C_t *cache, const H5C_cache_entry_t *parent, + const H5C_cache_entry_t *child, herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + HDassert(parent); + HDassert(child); + if(cache->log_info->cls->write_destroy_fd_log_msg) + if(cache->log_info->cls->write_destroy_fd_log_msg(cache->log_info->udata, parent, child, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific destroy fd call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_destroy_fd_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_unprotect_entry_msg + * + * Purpose: Write a log message for unprotecting a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_unprotect_entry_msg(H5C_t *cache, haddr_t address, + int type_id, unsigned flags, herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + if(cache->log_info->cls->write_unprotect_entry_log_msg) + if(cache->log_info->cls->write_unprotect_entry_log_msg(cache->log_info->udata, address, type_id, flags, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific unprotect entry call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_unprotect_entry_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_set_cache_config_msg + * + * Purpose: Write a log message for setting the cache configuration. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_set_cache_config_msg(H5C_t *cache, const H5AC_cache_config_t *config, + herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + HDassert(config); + if(cache->log_info->cls->write_set_cache_config_log_msg) + if(cache->log_info->cls->write_set_cache_config_log_msg(cache->log_info->udata, config, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific set cache config call failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_write_set_cache_config_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_write_remove_entry_msg + * + * Purpose: Write a log message for removing a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_write_remove_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(cache); + + /* Write a log message */ + HDassert(entry); + if(cache->log_info->cls->write_remove_entry_log_msg) + if(cache->log_info->cls->write_remove_entry_log_msg(cache->log_info->udata, entry, fxn_ret_value) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "log-specific remove entry call failed") done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5C_write_log_message() */ +} /* H5C_log_write_remove_entry_msg() */ diff --git a/src/H5Clog.h b/src/H5Clog.h new file mode 100644 index 0000000..0235c4a --- /dev/null +++ b/src/H5Clog.h @@ -0,0 +1,114 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* + * Purpose: Cache logging header file + */ + +#ifndef _H5Clog_H +#define _H5Clog_H + +/* Get package's private header */ +#include "H5Cprivate.h" /* Cache */ + +/**************************/ +/* Package Private Macros */ +/**************************/ + +/****************************/ +/* Package Private Typedefs */ +/****************************/ + +/* Forward declaration for class struct */ +typedef struct H5C_log_info_t H5C_log_info_t; + +/* Class for generating logging messages */ +typedef struct H5C_log_class_t { + const char *name; /* String for debugging */ + + /* Callbacks for writing log messages */ + herr_t (*tear_down_logging)(H5C_log_info_t *log_info); + herr_t (*start_logging)(H5C_log_info_t *log_info); + herr_t (*stop_logging)(H5C_log_info_t *log_info); + herr_t (*write_start_log_msg)(void *udata); + herr_t (*write_stop_log_msg)(void *udata); + herr_t (*write_create_cache_log_msg)(void *udata, herr_t fxn_ret_value); + herr_t (*write_destroy_cache_log_msg)(void *udata); + herr_t (*write_evict_cache_log_msg)(void *udata, herr_t fxn_ret_value); + herr_t (*write_expunge_entry_log_msg)(void *udata, haddr_t address, int type_id, herr_t fxn_ret_value); + herr_t (*write_flush_cache_log_msg)(void *udata, herr_t fxn_ret_value); + herr_t (*write_insert_entry_log_msg)(void *udata, haddr_t address, int type_id, unsigned flags, size_t size, herr_t fxn_ret_value); + herr_t (*write_mark_entry_dirty_log_msg)(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); + herr_t (*write_mark_entry_clean_log_msg)(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); + herr_t (*write_mark_unserialized_entry_log_msg)(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); + herr_t (*write_mark_serialized_entry_log_msg)(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); + herr_t (*write_move_entry_log_msg)(void *udata, haddr_t old_addr, haddr_t new_addr, int type_id, herr_t fxn_ret_value); + herr_t (*write_pin_entry_log_msg)(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); + herr_t (*write_create_fd_log_msg)(void *udata, const H5C_cache_entry_t *parent, const H5C_cache_entry_t *child, herr_t fxn_ret_value); + herr_t (*write_protect_entry_log_msg)(void *udata, const H5C_cache_entry_t *entry, int type_id, unsigned flags, herr_t fxn_ret_value); + herr_t (*write_resize_entry_log_msg)(void *udata, const H5C_cache_entry_t *entry, size_t new_size, herr_t fxn_ret_value); + herr_t (*write_unpin_entry_log_msg)(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); + herr_t (*write_destroy_fd_log_msg)(void *udata, const H5C_cache_entry_t *parent, const H5C_cache_entry_t *child, herr_t fxn_ret_value); + herr_t (*write_unprotect_entry_log_msg)(void *udata, haddr_t address, int type_id, unsigned flags, herr_t fxn_ret_value); + herr_t (*write_set_cache_config_log_msg)(void *udata, const H5AC_cache_config_t *config, herr_t fxn_ret_value); + herr_t (*write_remove_entry_log_msg)(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); + +} H5C_log_class_t; + +/* Logging information */ +struct H5C_log_info_t { + hbool_t enabled; /* Was the logging set up? */ + hbool_t logging; /* Are we currently logging? */ + H5C_log_class_t *cls; /* Callbacks for writing log messages */ + void *udata; /* Log-specific data */ +}; + + +/*****************************/ +/* Package Private Variables */ +/*****************************/ + + +/******************************/ +/* Package Private Prototypes */ +/******************************/ +H5_DLL herr_t H5C_log_set_up(H5C_t *cache, const char log_location[], H5C_log_style_t style, hbool_t start_immediately); +H5_DLL herr_t H5C_log_tear_down(H5C_t *cache); + +H5_DLL herr_t H5C_log_write_create_cache_msg(H5C_t *cache, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_destroy_cache_msg(H5C_t *cache); +H5_DLL herr_t H5C_log_write_evict_cache_msg(H5C_t *cache, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_expunge_entry_msg(H5C_t *cache, haddr_t address, int type_id, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_flush_cache_msg(H5C_t *cache, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_insert_entry_msg(H5C_t *cache, haddr_t address, int type_id, unsigned flags, size_t size, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_mark_entry_dirty_msg(H5C_t *cache, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_mark_entry_clean_msg(H5C_t *cache, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_mark_unserialized_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_mark_serialized_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_move_entry_msg(H5C_t *cache, haddr_t old_addr, haddr_t new_addr, int type_id, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_pin_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_create_fd_msg(H5C_t *cache, const H5C_cache_entry_t *parent, const H5C_cache_entry_t *child, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_protect_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, int type_id, unsigned flags, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_resize_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, size_t new_size, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_unpin_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_destroy_fd_msg(H5C_t *cache, const H5C_cache_entry_t *parent, const H5C_cache_entry_t *child, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_unprotect_entry_msg(H5C_t *cache, haddr_t address, int type_id, unsigned flags, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_set_cache_config_msg(H5C_t *cache, const H5AC_cache_config_t *config, herr_t fxn_ret_value); +H5_DLL herr_t H5C_log_write_remove_entry_msg(H5C_t *cache, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); + +/* Logging-specific setup functions */ +H5_DLL herr_t H5C_log_json_set_up(H5C_log_info_t *log_info, const char log_location[], int mpi_rank); +H5_DLL herr_t H5C_log_trace_set_up(H5C_log_info_t *log_info, const char log_location[], int mpi_rank); + +#endif /* _H5Clog_H */ + diff --git a/src/H5Clog_json.c b/src/H5Clog_json.c new file mode 100644 index 0000000..dd9e9b2 --- /dev/null +++ b/src/H5Clog_json.c @@ -0,0 +1,1364 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/*------------------------------------------------------------------------- + * + * Created: H5Clog_json.c + * + * Purpose: Cache log implementation that emits JSON-formatted log + * entries for consumption by new-fangled data analysis tools. + * + *------------------------------------------------------------------------- + */ + +/****************/ +/* Module Setup */ +/****************/ +#include "H5Cmodule.h" /* This source code file is part of the H5C module */ + +/***********/ +/* Headers */ +/***********/ +#include "H5private.h" /* Generic Functions */ +#include "H5Cpkg.h" /* Cache */ +#include "H5Clog.h" /* Cache logging */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5MMprivate.h" /* Memory management */ + + +/****************/ +/* Local Macros */ +/****************/ + +/* Max log message size */ +#define H5C_MAX_JSON_LOG_MSG_SIZE 1024 + + +/******************/ +/* Local Typedefs */ +/******************/ + + +/********************/ +/* Package Typedefs */ +/********************/ + +typedef struct H5C_log_json_udata_t { + FILE *outfile; + char *message; +} H5C_log_json_udata_t; + + +/********************/ +/* Local Prototypes */ +/********************/ + +/* Internal message handling calls */ +static herr_t H5C__json_write_log_message(H5C_log_json_udata_t *json_udata); + +/* Log message callbacks */ +static herr_t H5C__json_tear_down_logging(H5C_log_info_t *log_info); +static herr_t H5C__json_write_start_log_msg(void *udata); +static herr_t H5C__json_write_stop_log_msg(void *udata); +static herr_t H5C__json_write_create_cache_log_msg(void *udata, herr_t fxn_ret_value); +static herr_t H5C__json_write_destroy_cache_log_msg(void *udata); +static herr_t H5C__json_write_evict_cache_log_msg(void *udata, herr_t fxn_ret_value); +static herr_t H5C__json_write_expunge_entry_log_msg(void *udata, haddr_t address, int type_id, herr_t fxn_ret_value); +static herr_t H5C__json_write_flush_cache_log_msg(void *udata, herr_t fxn_ret_value); +static herr_t H5C__json_write_insert_entry_log_msg(void *udata, haddr_t address, int type_id, unsigned flags, size_t size, herr_t fxn_ret_value); +static herr_t H5C__json_write_mark_entry_dirty_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +static herr_t H5C__json_write_mark_entry_clean_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +static herr_t H5C__json_write_mark_unserialized_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +static herr_t H5C__json_write_mark_serialized_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +static herr_t H5C__json_write_move_entry_log_msg(void *udata, haddr_t old_addr, haddr_t new_addr, int type_id, herr_t fxn_ret_value); +static herr_t H5C__json_write_pin_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +static herr_t H5C__json_write_create_fd_log_msg(void *udata, const H5C_cache_entry_t *parent, const H5C_cache_entry_t *child, herr_t fxn_ret_value); +static herr_t H5C__json_write_protect_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, int type_id, unsigned flags, herr_t fxn_ret_value); +static herr_t H5C__json_write_resize_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, size_t new_size, herr_t fxn_ret_value); +static herr_t H5C__json_write_unpin_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +static herr_t H5C__json_write_destroy_fd_log_msg(void *udata, const H5C_cache_entry_t *parent, const H5C_cache_entry_t *child, herr_t fxn_ret_value); +static herr_t H5C__json_write_unprotect_entry_log_msg(void *udata, haddr_t address, int type_id, unsigned flags, herr_t fxn_ret_value); +static herr_t H5C__json_write_set_cache_config_log_msg(void *udata, const H5AC_cache_config_t *config, herr_t fxn_ret_value); +static herr_t H5C__json_write_remove_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); + + +/*********************/ +/* Package Variables */ +/*********************/ + + +/*****************************/ +/* Library Private Variables */ +/*****************************/ + + +/*******************/ +/* Local Variables */ +/*******************/ + +/* Note that there's no cache set up call since that's the + * place where this struct is wired into the cache. + */ +static H5C_log_class_t H5C_json_log_class_g = { + "json", + H5C__json_tear_down_logging, + NULL, /* start logging */ + NULL, /* stop logging */ + H5C__json_write_start_log_msg, + H5C__json_write_stop_log_msg, + H5C__json_write_create_cache_log_msg, + H5C__json_write_destroy_cache_log_msg, + H5C__json_write_evict_cache_log_msg, + H5C__json_write_expunge_entry_log_msg, + H5C__json_write_flush_cache_log_msg, + H5C__json_write_insert_entry_log_msg, + H5C__json_write_mark_entry_dirty_log_msg, + H5C__json_write_mark_entry_clean_log_msg, + H5C__json_write_mark_unserialized_entry_log_msg, + H5C__json_write_mark_serialized_entry_log_msg, + H5C__json_write_move_entry_log_msg, + H5C__json_write_pin_entry_log_msg, + H5C__json_write_create_fd_log_msg, + H5C__json_write_protect_entry_log_msg, + H5C__json_write_resize_entry_log_msg, + H5C__json_write_unpin_entry_log_msg, + H5C__json_write_destroy_fd_log_msg, + H5C__json_write_unprotect_entry_log_msg, + H5C__json_write_set_cache_config_log_msg, + H5C__json_write_remove_entry_log_msg +}; + + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_log_message + * + * Purpose: Write a message to the log file and flush the file. + * The message string is neither modified nor freed. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_log_message(H5C_log_json_udata_t *json_udata) +{ + size_t n_chars; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->outfile); + HDassert(json_udata->message); + + /* Write the log message and flush */ + n_chars = HDstrlen(json_udata->message); + if((int)n_chars != HDfprintf(json_udata->outfile, json_udata->message)) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "error writing log message") + HDmemset((void *)(json_udata->message), 0, (size_t)(n_chars * sizeof(char))); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_log_message() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_json_set_up + * + * Purpose: Setup for metadata cache logging. + * + * Metadata logging is enabled and disabled at two levels. This + * function and the associated tear_down function open and close + * the log file. the start_ and stop_logging functions are then + * used to switch logging on/off. Optionally, logging can begin + * as soon as the log file is opened (set via the start_immediately + * parameter to this function). + * + * The log functionality is split between the H5C and H5AC + * packages. Log state and direct log manipulation resides in + * H5C. Log messages are generated in H5AC and sent to + * the H5C__json_write_log_message function. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_json_set_up(H5C_log_info_t *log_info, const char log_location[], int mpi_rank) +{ + H5C_log_json_udata_t *json_udata = NULL; + char *file_name = NULL; + size_t n_chars; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(log_info); + HDassert(log_location); + + /* Set up the class struct */ + log_info->cls = &H5C_json_log_class_g; + + /* Allocate memory for the JSON-specific data */ + if(NULL == (log_info->udata = H5MM_calloc(sizeof(H5C_log_json_udata_t)))) + HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed") + json_udata = (H5C_log_json_udata_t *)(log_info->udata); + + /* Allocate memory for the message buffer */ + if(NULL == (json_udata->message = (char *)H5MM_calloc(H5C_MAX_JSON_LOG_MSG_SIZE * sizeof(char)))) + HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed") + + /* Possibly fix up the log file name. + * The extra 39 characters are for adding the rank to the file name + * under parallel HDF5. 39 characters allows > 2^127 processes which + * should be enough for anybody. + * + * allocation size = "RANK_" + <rank # length> + dot + <path length> + \0 + */ + n_chars = 5 + 39 + 1 + HDstrlen(log_location) + 1; + if(NULL == (file_name = (char *)H5MM_calloc(n_chars * sizeof(char)))) + HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "can't allocate memory for mdc log file name manipulation") + + /* Add the rank to the log file name when MPI is in use */ + if(-1 == mpi_rank) + HDsnprintf(file_name, n_chars, "%s", log_location); + else + HDsnprintf(file_name, n_chars, "RANK_%d.%s", mpi_rank, log_location); + + /* Open log file and set it to be unbuffered */ + if(NULL == (json_udata->outfile = HDfopen(file_name, "w"))) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "can't create mdc log file") + HDsetbuf(json_udata->outfile, NULL); + + done: + if(file_name) + H5MM_xfree(file_name); + + /* Free and reset the log info struct on errors */ + if(FAIL == ret_value) { + /* Free */ + if(json_udata && json_udata->message) + H5MM_xfree(json_udata->message); + if(json_udata) + H5MM_xfree(json_udata); + + /* Reset */ + log_info->udata = NULL; + log_info->cls = NULL; + } + + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_json_set_up() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_tear_down_logging + * + * Purpose: Tear-down for metadata cache logging. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_tear_down_logging(H5C_log_info_t *log_info) +{ + H5C_log_json_udata_t *json_udata = NULL; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(log_info); + + /* Alias */ + json_udata = (H5C_log_json_udata_t *)(log_info->udata); + + /* Free the message buffer */ + H5MM_xfree(json_udata->message); + + /* Close log file */ + if(EOF == HDfclose(json_udata->outfile)) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "problem closing mdc log file") + json_udata->outfile = NULL; + + /* Fre the udata */ + H5MM_xfree(json_udata); + + /* Reset the log class info and udata */ + log_info->cls = NULL; + log_info->udata = NULL; + + done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_tear_down_logging() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_start_log_msg + * + * Purpose: Write a log message when logging starts. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_start_log_msg(void *udata) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + + /* Create the log message string (opens the JSON array) */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\n\ +\"HDF5 metadata cache log messages\" : [\n\ +{\ +\"timestamp\":%lld,\ +\"action\":\"logging start\"\ +},\n\ +" + , (long long)HDtime(NULL)); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_start_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_stop_log_msg + * + * Purpose: Write a log message when logging ends. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_stop_log_msg(void *udata) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + + /* Create the log message string (closes the JSON array) */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"logging stop\"\ +}\n\ +]}\n\ +" + , (long long)HDtime(NULL)); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_stop_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_create_cache_log_msg + * + * Purpose: Write a log message for cache creation. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_create_cache_log_msg(void *udata, herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"create\",\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_create_cache_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_destroy_cache_log_msg + * + * Purpose: Write a log message for cache destruction. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_destroy_cache_log_msg(void *udata) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"destroy\"\ +},\n\ +" + , (long long)HDtime(NULL)); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_destroy_cache_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_evict_cache_log_msg + * + * Purpose: Write a log message for eviction of cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_evict_cache_log_msg(void *udata, herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"evict\",\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_evict_cache_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_expunge_entry_log_msg + * + * Purpose: Write a log message for expunge of cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_expunge_entry_log_msg(void *udata, haddr_t address, + int type_id, herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"expunge\",\ +\"address\":0x%lx,\ +\"type_id\":%d,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)address, (int)type_id, (int)fxn_ret_value); + + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_expunge_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_flush_cache_log_msg + * + * Purpose: Write a log message for cache flushes. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_flush_cache_log_msg(void *udata, herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"flush\",\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_flush_cache_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_insert_entry_log_msg + * + * Purpose: Write a log message for insertion of cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_insert_entry_log_msg(void *udata, haddr_t address, + int type_id, unsigned flags, size_t size, herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"insert\",\ +\"address\":0x%lx,\ +\"type_id\":%d,\ +\"flags\":0x%x,\ +\"size\":%d,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)address, type_id, flags, + (int)size, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_insert_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_mark_entry_dirty_log_msg + * + * Purpose: Write a log message for marking cache entries as dirty. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_mark_entry_dirty_log_msg(void *udata, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"dirty\",\ +\"address\":0x%lx,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)entry->addr, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_mark_entry_dirty_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_mark_entry_clean_log_msg + * + * Purpose: Write a log message for marking cache entries as clean. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_mark_entry_clean_log_msg(void *udata, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"clean\",\ +\"address\":0x%lx,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)entry->addr, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_mark_entry_clean_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_mark_unserialized_entry_log_msg + * + * Purpose: Write a log message for marking cache entries as unserialized. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_mark_unserialized_entry_log_msg(void *udata, + const H5C_cache_entry_t *entry, herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"unserialized\",\ +\"address\":0x%lx,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)entry->addr, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_mark_unserialized_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_mark_serialize_entry_log_msg + * + * Purpose: Write a log message for marking cache entries as serialize. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_mark_serialized_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"serialized\",\ +\"address\":0x%lx,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)entry->addr, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_mark_serialized_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_move_entry_log_msg + * + * Purpose: Write a log message for moving a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_move_entry_log_msg(void *udata, haddr_t old_addr, haddr_t new_addr, + int type_id, herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"move\",\ +\"old_address\":0x%lx,\ +\"new_address\":0x%lx,\ +\"type_id\":%d,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)old_addr, + (unsigned long)new_addr, type_id, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_move_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_pin_entry_log_msg + * + * Purpose: Write a log message for pinning a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_pin_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"pin\",\ +\"address\":0x%lx,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)entry->addr, + (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_pin_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_create_fd_log_msg + * + * Purpose: Write a log message for creating a flush dependency between + * two cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_create_fd_log_msg(void *udata, const H5C_cache_entry_t *parent, + const H5C_cache_entry_t *child, herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + HDassert(parent); + HDassert(child); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"create_fd\",\ +\"parent_addr\":0x%lx,\ +\"child_addr\":0x%lx,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)parent->addr, + (unsigned long)child->addr, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_create_fd_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_protect_entry_log_msg + * + * Purpose: Write a log message for protecting a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_protect_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, + int type_id, unsigned flags, herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + char rw_s[16]; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + HDassert(entry); + + if(H5C__READ_ONLY_FLAG == flags) + HDstrcpy(rw_s, "READ"); + else + HDstrcpy(rw_s, "WRITE"); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"protect\",\ +\"address\":0x%lx,\ +\"type_id\":%d,\ +\"readwrite\":\"%s\",\ +\"size\":%d,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)entry->addr, + type_id, rw_s, (int)entry->size, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_protect_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_resize_entry_log_msg + * + * Purpose: Write a log message for resizing a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_resize_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, + size_t new_size, herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"resize\",\ +\"address\":0x%lx,\ +\"new_size\":%d,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)entry->addr, + (int)new_size, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_resize_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_unpin_entry_log_msg + * + * Purpose: Write a log message for unpinning a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_unpin_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"unpin\",\ +\"address\":0x%lx,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)entry->addr, + (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_unpin_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_destroy_fd_log_msg + * + * Purpose: Write a log message for destroying a flush dependency + * between two cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_destroy_fd_log_msg(void *udata, const H5C_cache_entry_t *parent, + const H5C_cache_entry_t *child, herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + HDassert(parent); + HDassert(child); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"destroy_fd\",\ +\"parent_addr\":0x%lx,\ +\"child_addr\":0x%lx,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)parent->addr, + (unsigned long)child->addr, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_destroy_fd_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_unprotect_entry_log_msg + * + * Purpose: Write a log message for unprotecting a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_unprotect_entry_log_msg(void *udata, haddr_t address, + int type_id, unsigned flags, herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"unprotect\",\ +\"address\":0x%lx,\ +\"id\":%d,\ +\"flags\":%x,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)address, + type_id, flags, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_unprotect_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_set_cache_config_log_msg + * + * Purpose: Write a log message for setting the cache configuration. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_set_cache_config_log_msg(void *udata, const H5AC_cache_config_t *config, + herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + HDassert(config); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"set_config\",\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (int)fxn_ret_value); + + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_set_cache_config_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__json_write_remove_entry_log_msg + * + * Purpose: Write a log message for removing a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__json_write_remove_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(json_udata); + HDassert(json_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(json_udata->message, H5C_MAX_JSON_LOG_MSG_SIZE, +"\ +{\ +\"timestamp\":%lld,\ +\"action\":\"remove\",\ +\"address\":0x%lx,\ +\"returned\":%d\ +},\n\ +" + , (long long)HDtime(NULL), (unsigned long)entry->addr, + (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__json_write_log_message(json_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__json_write_remove_entry_log_msg() */ + diff --git a/src/H5Clog_trace.c b/src/H5Clog_trace.c new file mode 100644 index 0000000..7c1305c --- /dev/null +++ b/src/H5Clog_trace.c @@ -0,0 +1,1007 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/*------------------------------------------------------------------------- + * + * Created: H5Clog_trace.c + * + * Purpose: Cache log implementation that emits trace entries intended + * for consumption by a future 'cache replay' feature. + * + *------------------------------------------------------------------------- + */ + +/****************/ +/* Module Setup */ +/****************/ +#include "H5Cmodule.h" /* This source code file is part of the H5C module */ + +/***********/ +/* Headers */ +/***********/ +#include "H5private.h" /* Generic Functions */ +#include "H5Cpkg.h" /* Cache */ +#include "H5Clog.h" /* Cache logging */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5MMprivate.h" /* Memory management */ + + +/****************/ +/* Local Macros */ +/****************/ + +/* Max log message size */ +#define H5C_MAX_TRACE_LOG_MSG_SIZE 2048 + + +/******************/ +/* Local Typedefs */ +/******************/ + + +/********************/ +/* Package Typedefs */ +/********************/ + +typedef struct H5C_log_trace_udata_t { + FILE *outfile; + char *message; +} H5C_log_trace_udata_t; + + +/********************/ +/* Local Prototypes */ +/********************/ + +/* Internal message handling calls */ +static herr_t H5C__trace_write_log_message(H5C_log_trace_udata_t *trace_udata); + +/* Log message callbacks */ +static herr_t H5C__trace_tear_down_logging(H5C_log_info_t *log_info); +static herr_t H5C__trace_write_expunge_entry_log_msg(void *udata, haddr_t address, int type_id, herr_t fxn_ret_value); +static herr_t H5C__trace_write_flush_cache_log_msg(void *udata, herr_t fxn_ret_value); +static herr_t H5C__trace_write_insert_entry_log_msg(void *udata, haddr_t address, int type_id, unsigned flags, size_t size, herr_t fxn_ret_value); +static herr_t H5C__trace_write_mark_entry_dirty_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +static herr_t H5C__trace_write_mark_entry_clean_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +static herr_t H5C__trace_write_mark_unserialized_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +static herr_t H5C__trace_write_mark_serialized_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +static herr_t H5C__trace_write_move_entry_log_msg(void *udata, haddr_t old_addr, haddr_t new_addr, int type_id, herr_t fxn_ret_value); +static herr_t H5C__trace_write_pin_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +static herr_t H5C__trace_write_create_fd_log_msg(void *udata, const H5C_cache_entry_t *parent, const H5C_cache_entry_t *child, herr_t fxn_ret_value); +static herr_t H5C__trace_write_protect_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, int type_id, unsigned flags, herr_t fxn_ret_value); +static herr_t H5C__trace_write_resize_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, size_t new_size, herr_t fxn_ret_value); +static herr_t H5C__trace_write_unpin_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); +static herr_t H5C__trace_write_destroy_fd_log_msg(void *udata, const H5C_cache_entry_t *parent, const H5C_cache_entry_t *child, herr_t fxn_ret_value); +static herr_t H5C__trace_write_unprotect_entry_log_msg(void *udata, haddr_t address, int type_id, unsigned flags, herr_t fxn_ret_value); +static herr_t H5C__trace_write_set_cache_config_log_msg(void *udata, const H5AC_cache_config_t *config, herr_t fxn_ret_value); +static herr_t H5C__trace_write_remove_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, herr_t fxn_ret_value); + + +/*********************/ +/* Package Variables */ +/*********************/ + + +/*****************************/ +/* Library Private Variables */ +/*****************************/ + + +/*******************/ +/* Local Variables */ +/*******************/ + +/* Note that there's no cache set up call since that's the + * place where this struct is wired into the cache. + */ +static H5C_log_class_t H5C_trace_log_class_g = { + "trace", + H5C__trace_tear_down_logging, + NULL, /* start logging */ + NULL, /* stop logging */ + NULL, /* write start message */ + NULL, /* write stop message */ + NULL, /* write create cache message */ + NULL, /* write destroy cache message */ + NULL, /* write evict cache message */ + H5C__trace_write_expunge_entry_log_msg, + H5C__trace_write_flush_cache_log_msg, + H5C__trace_write_insert_entry_log_msg, + H5C__trace_write_mark_entry_dirty_log_msg, + H5C__trace_write_mark_entry_clean_log_msg, + H5C__trace_write_mark_unserialized_entry_log_msg, + H5C__trace_write_mark_serialized_entry_log_msg, + H5C__trace_write_move_entry_log_msg, + H5C__trace_write_pin_entry_log_msg, + H5C__trace_write_create_fd_log_msg, + H5C__trace_write_protect_entry_log_msg, + H5C__trace_write_resize_entry_log_msg, + H5C__trace_write_unpin_entry_log_msg, + H5C__trace_write_destroy_fd_log_msg, + H5C__trace_write_unprotect_entry_log_msg, + H5C__trace_write_set_cache_config_log_msg, + H5C__trace_write_remove_entry_log_msg +}; + + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_log_message + * + * Purpose: Write a message to the log file and flush the file. + * The message string is neither modified nor freed. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_log_message(H5C_log_trace_udata_t *trace_udata) +{ + size_t n_chars; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->outfile); + HDassert(trace_udata->message); + + /* Write the log message and flush */ + n_chars = HDstrlen(trace_udata->message); + if((int)n_chars != HDfprintf(trace_udata->outfile, trace_udata->message)) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "error writing log message") + HDmemset((void *)(trace_udata->message), 0, (size_t)(n_chars * sizeof(char))); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_log_message() */ + + +/*------------------------------------------------------------------------- + * Function: H5C_log_trace_set_up + * + * Purpose: Setup for metadata cache logging. + * + * Metadata logging is enabled and disabled at two levels. This + * function and the associated tear_down function open and close + * the log file. the start_ and stop_logging functions are then + * used to switch logging on/off. Optionally, logging can begin + * as soon as the log file is opened (set via the start_immediately + * parameter to this function). + * + * The log functionality is split between the H5C and H5AC + * packages. Log state and direct log manipulation resides in + * H5C. Log messages are generated in H5AC and sent to + * the H5C__trace_write_log_message function. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +herr_t +H5C_log_trace_set_up(H5C_log_info_t *log_info, const char log_location[], int mpi_rank) +{ + H5C_log_trace_udata_t *trace_udata = NULL; + char *file_name = NULL; + size_t n_chars; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(log_info); + HDassert(log_location); + + /* Set up the class struct */ + log_info->cls = &H5C_trace_log_class_g; + + /* Allocate memory for the JSON-specific data */ + if(NULL == (log_info->udata = H5MM_calloc(sizeof(H5C_log_trace_udata_t)))) + HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed") + trace_udata = (H5C_log_trace_udata_t *)(log_info->udata); + + /* Allocate memory for the message buffer */ + if(NULL == (trace_udata->message = (char *)H5MM_calloc(H5C_MAX_TRACE_LOG_MSG_SIZE * sizeof(char)))) + HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed") + + /* Possibly fix up the log file name. + * The extra 39 characters are for adding the rank to the file name + * under parallel HDF5. 39 characters allows > 2^127 processes which + * should be enough for anybody. + * + * allocation size = <path length> + dot + <rank # length> + \0 + */ + n_chars = HDstrlen(log_location) + 1 + 39 + 1; + if(NULL == (file_name = (char *)H5MM_calloc(n_chars * sizeof(char)))) + HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "can't allocate memory for mdc log file name manipulation") + + /* Add the rank to the log file name when MPI is in use */ + if(-1 == mpi_rank) + HDsnprintf(file_name, n_chars, "%s", log_location); + else + HDsnprintf(file_name, n_chars, "%s.%d", log_location, mpi_rank); + + /* Open log file and set it to be unbuffered */ + if(NULL == (trace_udata->outfile = HDfopen(file_name, "w"))) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "can't create mdc log file") + HDsetbuf(trace_udata->outfile, NULL); + + /* Write the header */ + HDfprintf(trace_udata->outfile, "### HDF5 metadata cache trace file version 1 ###\n"); + + done: + if(file_name) + H5MM_xfree(file_name); + + /* Free and reset the log info struct on errors */ + if(FAIL == ret_value) { + /* Free */ + if(trace_udata && trace_udata->message) + H5MM_xfree(trace_udata->message); + if(trace_udata) + H5MM_xfree(trace_udata); + + /* Reset */ + log_info->udata = NULL; + log_info->cls = NULL; + } + + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C_log_trace_set_up() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_tear_down_logging + * + * Purpose: Tear-down for metadata cache logging. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_tear_down_logging(H5C_log_info_t *log_info) +{ + H5C_log_trace_udata_t *trace_udata = NULL; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(log_info); + + /* Alias */ + trace_udata = (H5C_log_trace_udata_t *)(log_info->udata); + + /* Free the message buffer */ + H5MM_xfree(trace_udata->message); + + /* Close log file */ + if(EOF == HDfclose(trace_udata->outfile)) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "problem closing mdc log file") + trace_udata->outfile = NULL; + + /* Fre the udata */ + H5MM_xfree(trace_udata); + + /* Reset the log class info and udata */ + log_info->cls = NULL; + log_info->udata = NULL; + + done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_tear_down_logging() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_expunge_entry_log_msg + * + * Purpose: Write a log message for expunge of cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_expunge_entry_log_msg(void *udata, haddr_t address, + int type_id, herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_expunge_entry 0x%lx %d %d\n", + (unsigned long)address, type_id, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_expunge_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_flush_cache_log_msg + * + * Purpose: Write a log message for cache flushes. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_flush_cache_log_msg(void *udata, herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_flush %d\n", + (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_flush_cache_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_insert_entry_log_msg + * + * Purpose: Write a log message for insertion of cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_insert_entry_log_msg(void *udata, haddr_t address, + int type_id, unsigned flags, size_t size, herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_insert_entry 0x%lx %d 0x%x %d %d\n", + (unsigned long)address, type_id, flags, (int)size, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_insert_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_mark_entry_dirty_log_msg + * + * Purpose: Write a log message for marking cache entries as dirty. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_mark_entry_dirty_log_msg(void *udata, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_mark_entry_dirty 0x%lx %d\n", + (unsigned long)(entry->addr), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_mark_entry_dirty_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_mark_entry_clean_log_msg + * + * Purpose: Write a log message for marking cache entries as clean. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_mark_entry_clean_log_msg(void *udata, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_mark_entry_clean 0x%lx %d\n", + (unsigned long)(entry->addr), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_mark_entry_clean_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_mark_unserialized_entry_log_msg + * + * Purpose: Write a log message for marking cache entries as unserialized. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_mark_unserialized_entry_log_msg(void *udata, + const H5C_cache_entry_t *entry, herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_mark_entry_unserialized 0x%lx %d\n", + (unsigned long)(entry->addr), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_mark_unserialized_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_mark_serialized_entry_log_msg + * + * Purpose: Write a log message for marking cache entries as serialize. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_mark_serialized_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_mark_entry_serialized 0x%lx %d\n", + (unsigned long)(entry->addr), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_mark_serialized_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_move_entry_log_msg + * + * Purpose: Write a log message for moving a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_move_entry_log_msg(void *udata, haddr_t old_addr, haddr_t new_addr, + int type_id, herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_move_entry 0x%lx 0x%lx %d %d\n", + (unsigned long)old_addr, (unsigned long)new_addr, type_id, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_move_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_pin_entry_log_msg + * + * Purpose: Write a log message for pinning a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_pin_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_pin_protected_entry 0x%lx %d\n", + (unsigned long)(entry->addr), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_pin_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_create_fd_log_msg + * + * Purpose: Write a log message for creating a flush dependency between + * two cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_create_fd_log_msg(void *udata, const H5C_cache_entry_t *parent, + const H5C_cache_entry_t *child, herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + HDassert(parent); + HDassert(child); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_create_flush_dependency 0x%lx 0x%lx %d\n", + (unsigned long)(parent->addr), (unsigned long)(child->addr), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_create_fd_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_protect_entry_log_msg + * + * Purpose: Write a log message for protecting a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_protect_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, + int type_id, unsigned flags, herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_protect 0x%lx %d 0x%x %d %d\n", + (unsigned long)(entry->addr), type_id, flags, (int)(entry->size), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_protect_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_resize_entry_log_msg + * + * Purpose: Write a log message for resizing a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_resize_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, + size_t new_size, herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_resize_entry 0x%lx %d %d\n", + (unsigned long)(entry->addr), (int)new_size, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_resize_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_unpin_entry_log_msg + * + * Purpose: Write a log message for unpinning a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_unpin_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_unpin_entry 0x%lx %d\n", + (unsigned long)(entry->addr), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_unpin_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_destroy_fd_log_msg + * + * Purpose: Write a log message for destroying a flush dependency + * between two cache entries. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_destroy_fd_log_msg(void *udata, const H5C_cache_entry_t *parent, + const H5C_cache_entry_t *child, herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + HDassert(parent); + HDassert(child); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_destroy_flush_dependency 0x%lx 0x%lx %d\n", + (unsigned long)(parent->addr), (unsigned long)(child->addr), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_destroy_fd_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_unprotect_entry_log_msg + * + * Purpose: Write a log message for unprotecting a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_unprotect_entry_log_msg(void *udata, haddr_t address, + int type_id, unsigned flags, herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_unprotect 0x%lx %d 0x%x %d\n", + (unsigned long)(address), type_id, flags, (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_unprotect_entry_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_set_cache_config_log_msg + * + * Purpose: Write a log message for setting the cache configuration. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_set_cache_config_log_msg(void *udata, const H5AC_cache_config_t *config, + herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + HDassert(config); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, + "H5AC_set_cache_auto_resize_config %d %d %d %d \"%s\" %d %d %d %f %d %d %ld %d %f %f %d %f %f %d %d %d %f %f %d %d %d %d %f %zu %d %d\n", + config->version, + (int)(config->rpt_fcn_enabled), + (int)(config->open_trace_file), + (int)(config->close_trace_file), + config->trace_file_name, + (int)(config->evictions_enabled), + (int)(config->set_initial_size), + (int)(config->initial_size), + config->min_clean_fraction, + (int)(config->max_size), + (int)(config->min_size), + config->epoch_length, + (int)(config->incr_mode), + config->lower_hr_threshold, + config->increment, + (int)(config->flash_incr_mode), + config->flash_multiple, + config->flash_threshold, + (int)(config->apply_max_increment), + (int)(config->max_increment), + (int)(config->decr_mode), + config->upper_hr_threshold, + config->decrement, + (int)(config->apply_max_decrement), + (int)(config->max_decrement), + config->epochs_before_eviction, + (int)(config->apply_empty_reserve), + config->empty_reserve, + config->dirty_bytes_threshold, + config->metadata_write_strategy, + (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_set_cache_config_log_msg() */ + + +/*------------------------------------------------------------------------- + * Function: H5C__trace_write_remove_entry_log_msg + * + * Purpose: Write a log message for removing a cache entry. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2018 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5C__trace_write_remove_entry_log_msg(void *udata, const H5C_cache_entry_t *entry, + herr_t fxn_ret_value) +{ + H5C_log_trace_udata_t *trace_udata = (H5C_log_trace_udata_t *)(udata); + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(trace_udata); + HDassert(trace_udata->message); + HDassert(entry); + + /* Create the log message string */ + HDsnprintf(trace_udata->message, H5C_MAX_TRACE_LOG_MSG_SIZE, "H5AC_remove_entry 0x%lx %d\n", + (unsigned long)(entry->addr), (int)fxn_ret_value); + + /* Write the log message to the file */ + if(H5C__trace_write_log_message(trace_udata) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_LOGGING, FAIL, "unable to emit log message") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5C__trace_write_remove_entry_log_msg() */ + diff --git a/src/H5Cpkg.h b/src/H5Cpkg.h index 98d7a01..9156c0d 100644 --- a/src/H5Cpkg.h +++ b/src/H5Cpkg.h @@ -37,6 +37,7 @@ #include "H5Cprivate.h" /* Other private headers needed by this file */ +#include "H5Clog.h" /* Cache logging */ #include "H5SLprivate.h" /* Skip lists */ /**************************/ @@ -3497,40 +3498,8 @@ typedef struct H5C_tag_info_t { * flush_in_progress: Boolean flag indicating whether a flush is in * progress. * - * trace_file_ptr: File pointer pointing to the trace file, which is used - * to record cache operations for use in simulations and design - * studies. This field will usually be NULL, indicating that - * no trace file should be recorded. - * - * Since much of the code supporting the parallel metadata - * cache is in H5AC, we don't write the trace file from - * H5C. Instead, H5AC reads the trace_file_ptr as needed. - * - * When we get to using H5C in other places, we may add - * code to write trace file data at the H5C level as well. - * - * logging_enabled: Boolean flag indicating whether cache logging - * which is used to record cache operations for use in - * debugging and performance analysis. When this flag is set - * to TRUE, it means that the log file is open and ready to - * receive log entries. It does NOT mean that cache operations - * are currently being recorded. That is controlled by the - * currently_logging flag (below). - * - * Since much of the code supporting the parallel metadata - * cache is in H5AC, we don't write the trace file from - * H5C. Instead, H5AC reads the trace_file_ptr as needed. - * - * When we get to using H5C in other places, we may add - * code to write trace file data at the H5C level as well. - * - * currently_logging: Boolean flag that indicates if cache operations are - * currently being logged. This flag is flipped by the - * H5Fstart/stop_mdc_logging functions. - * - * log_file_ptr: File pointer pointing to the log file. The I/O functions - * in stdio.h are used to write to the log file regardless of - * the VFD selected. + * log_info: Information used by the MDC logging functionality. + * Described in H5Clog.h. * * aux_ptr: Pointer to void used to allow wrapper code to associate * its data with an instance of H5C_t. The H5C cache code @@ -3854,6 +3823,13 @@ typedef struct H5C_tag_info_t { * * ignore_tags: Boolean flag to disable tag validation during entry insertion. * + * num_objs_corked: Unsigned integer field containing the number of objects + * that are "corked". The "corked" status of an object is + * found by searching the "tag_list". This field is added + * for optimization so that the skip list search on "tag_list" + * can be skipped if this field is zero, i.e. no "corked" + * objects. + * * When a cache entry is protected, it must be removed from the LRU * list(s) as it cannot be either flushed or evicted until it is unprotected. * The following fields are used to implement the protected list (pl). @@ -4676,10 +4652,7 @@ typedef struct H5C_tag_info_t { struct H5C_t { uint32_t magic; hbool_t flush_in_progress; - FILE * trace_file_ptr; - hbool_t logging_enabled; - hbool_t currently_logging; - FILE * log_file_ptr; + H5C_log_info_t *log_info; void * aux_ptr; int32_t max_type_id; const H5C_class_t * const *class_table_ptr; @@ -4727,6 +4700,7 @@ struct H5C_t { /* Fields for maintaining list of tagged entries */ H5SL_t * tag_list; hbool_t ignore_tags; + uint32_t num_objs_corked; /* Fields for tracking protected entries */ uint32_t pl_len; diff --git a/src/H5Cprivate.h b/src/H5Cprivate.h index 38a86ee..d4ed6fc 100644 --- a/src/H5Cprivate.h +++ b/src/H5Cprivate.h @@ -2219,6 +2219,12 @@ typedef struct H5C_cache_image_ctl_t { unsigned flags; } H5C_cache_image_ctl_t; +/* The cache logging output style */ +typedef enum H5C_log_style_t { + H5C_LOG_STYLE_JSON, + H5C_LOG_STYLE_TRACE +} H5C_log_style_t; + /***************************************/ /* Library-private Function Prototypes */ /***************************************/ @@ -2227,13 +2233,6 @@ H5_DLL H5C_t *H5C_create(size_t max_cache_size, size_t min_clean_size, int max_type_id, const H5C_class_t * const *class_table_ptr, H5C_write_permitted_func_t check_write_permitted, hbool_t write_permitted, H5C_log_flush_func_t log_flush, void *aux_ptr); -H5_DLL herr_t H5C_set_up_logging(H5C_t *cache_ptr, const char log_location[], hbool_t start_immediately); -H5_DLL herr_t H5C_tear_down_logging(H5C_t *cache_ptr); -H5_DLL herr_t H5C_start_logging(H5C_t *cache_ptr); -H5_DLL herr_t H5C_stop_logging(H5C_t *cache_ptr); -H5_DLL herr_t H5C_get_logging_status(const H5C_t *cache_ptr, /*OUT*/ hbool_t *is_enabled, - /*OUT*/ hbool_t *is_currently_logging); -H5_DLL herr_t H5C_write_log_message(const H5C_t *cache_ptr, const char message[]); H5_DLL void H5C_def_auto_resize_rpt_fcn(H5C_t *cache_ptr, int32_t version, double hit_rate, enum H5C_resize_status status, size_t old_max_cache_size, size_t new_max_cache_size, @@ -2267,8 +2266,6 @@ H5_DLL herr_t H5C_get_entry_status(const H5F_t *f, haddr_t addr, hbool_t *image_up_to_date_ptr); H5_DLL herr_t H5C_get_evictions_enabled(const H5C_t *cache_ptr, hbool_t *evictions_enabled_ptr); H5_DLL void * H5C_get_aux_ptr(const H5C_t *cache_ptr); -H5_DLL FILE *H5C_get_trace_file_ptr(const H5C_t *cache_ptr); -H5_DLL FILE *H5C_get_trace_file_ptr_from_entry(const H5C_cache_entry_t *entry_ptr); H5_DLL herr_t H5C_image_stats(H5C_t * cache_ptr, hbool_t print_header); H5_DLL herr_t H5C_insert_entry(H5F_t *f, const H5C_class_t *type, haddr_t addr, void *thing, unsigned int flags); @@ -2292,7 +2289,6 @@ H5_DLL herr_t H5C_set_cache_image_config(const H5F_t *f, H5C_t *cache_ptr, H5C_cache_image_ctl_t *config_ptr); H5_DLL herr_t H5C_set_evictions_enabled(H5C_t *cache_ptr, hbool_t evictions_enabled); H5_DLL herr_t H5C_set_prefix(H5C_t *cache_ptr, char *prefix); -H5_DLL herr_t H5C_set_trace_file_ptr(H5C_t *cache_ptr, FILE *trace_file_ptr); H5_DLL herr_t H5C_stats(H5C_t *cache_ptr, const char *cache_name, hbool_t display_detailed_stats); H5_DLL void H5C_stats__reset(H5C_t *cache_ptr); @@ -2305,6 +2301,7 @@ H5_DLL herr_t H5C_validate_resize_config(H5C_auto_size_ctl_t *config_ptr, unsigned int tests); H5_DLL herr_t H5C_ignore_tags(H5C_t *cache_ptr); H5_DLL hbool_t H5C_get_ignore_tags(const H5C_t *cache_ptr); +H5_DLL uint32_t H5C_get_num_objs_corked(const H5C_t *cache_ptr); H5_DLL herr_t H5C_retag_entries(H5C_t * cache_ptr, haddr_t src_tag, haddr_t dest_tag); H5_DLL herr_t H5C_cork(H5C_t *cache_ptr, haddr_t obj_addr, unsigned action, hbool_t *corked); H5_DLL herr_t H5C_get_entry_ring(const H5F_t *f, haddr_t addr, H5C_ring_t *ring); @@ -2316,6 +2313,11 @@ H5_DLL herr_t H5C_cache_image_status(H5F_t * f, hbool_t *load_ci_ptr, H5_DLL hbool_t H5C_cache_image_pending(const H5C_t *cache_ptr); H5_DLL herr_t H5C_get_mdc_image_info(H5C_t *cache_ptr, haddr_t *image_addr, hsize_t *image_len); +/* Logging functions */ +H5_DLL herr_t H5C_start_logging(H5C_t *cache); +H5_DLL herr_t H5C_stop_logging(H5C_t *cache); +H5_DLL herr_t H5C_get_logging_status(const H5C_t *cache, /*OUT*/ hbool_t *is_enabled, /*OUT*/ hbool_t *is_currently_logging); + #ifdef H5_HAVE_PARALLEL H5_DLL herr_t H5C_apply_candidate_list(H5F_t *f, H5C_t *cache_ptr, unsigned num_candidates, haddr_t *candidates_list_ptr, int mpi_rank, diff --git a/src/H5Cquery.c b/src/H5Cquery.c index 6c927b0..68258a6 100644 --- a/src/H5Cquery.c +++ b/src/H5Cquery.c @@ -351,64 +351,6 @@ H5C_get_aux_ptr(const H5C_t *cache_ptr) /*------------------------------------------------------------------------- - * Function: H5C_get_trace_file_ptr - * - * Purpose: Get the trace_file_ptr field from the cache. - * - * This field will either be NULL (which indicates that trace - * file logging is turned off), or contain a pointer to the - * open file to which trace file data is to be written. - * - * Return: Non-NULL trace file pointer (can't fail) - * - * Programmer: John Mainzer - * 1/20/06 - * - *------------------------------------------------------------------------- - */ -FILE * -H5C_get_trace_file_ptr(const H5C_t *cache_ptr) -{ - FUNC_ENTER_NOAPI_NOERR - - /* Check arguments */ - HDassert(cache_ptr); - HDassert(cache_ptr->magic == H5C__H5C_T_MAGIC); - - FUNC_LEAVE_NOAPI(cache_ptr->trace_file_ptr) -} /* H5C_get_trace_file_ptr() */ - - -/*------------------------------------------------------------------------- - * Function: H5C_get_trace_file_ptr_from_entry - * - * Purpose: Get the trace_file_ptr field from the cache, via an entry. - * - * This field will either be NULL (which indicates that trace - * file logging is turned off), or contain a pointer to the - * open file to which trace file data is to be written. - * - * Return: Non-NULL trace file pointer (can't fail) - * - * Programmer: Quincey Koziol - * 6/9/08 - * - *------------------------------------------------------------------------- - */ -FILE * -H5C_get_trace_file_ptr_from_entry(const H5C_cache_entry_t *entry_ptr) -{ - FUNC_ENTER_NOAPI_NOERR - - /* Sanity checks */ - HDassert(entry_ptr); - HDassert(entry_ptr->cache_ptr); - - FUNC_LEAVE_NOAPI(H5C_get_trace_file_ptr(entry_ptr->cache_ptr)) -} /* H5C_get_trace_file_ptr_from_entry() */ - - -/*------------------------------------------------------------------------- * Function: H5C_get_entry_ring * * Purpose: Given a file address, retrieve the ring for an entry at that diff --git a/src/H5Ctag.c b/src/H5Ctag.c index 66aedd9..d1ede0f 100644 --- a/src/H5Ctag.c +++ b/src/H5Ctag.c @@ -175,6 +175,32 @@ H5C_get_ignore_tags(const H5C_t *cache_ptr) /*------------------------------------------------------------------------- * + * Function: H5C_get_num_objs_corked + * + * Purpose: Retrieve the 'num_objs_corked' field for the cache + * + * Return: 'num_objs_corked' value (can't fail) + * + * Programmer: Vailin Choi; Feb 2019 + * + *------------------------------------------------------------------------- + */ +uint32_t +H5C_get_num_objs_corked(const H5C_t *cache_ptr) +{ + FUNC_ENTER_NOAPI_NOERR + + /* Sanity checks */ + HDassert(cache_ptr); + HDassert(cache_ptr->magic == H5C__H5C_T_MAGIC); + + /* Return value for num_objs_corked */ + FUNC_LEAVE_NOAPI(cache_ptr->num_objs_corked) +} /* H5C_get_num_objs_corked */ + + +/*------------------------------------------------------------------------- + * * Function: H5C__tag_entry * * Purpose: Tags an entry with the provided tag (contained in the API context). @@ -220,8 +220,8 @@ H5Dcreate_anon(hid_t loc_id, hid_t type_id, hid_t space_id, hid_t dcpl_id, HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, H5I_INVALID_HID, "can't set access property list info") /* build and open the new dataset */ - if(NULL == (dset = H5D__create_anon(loc.oloc->file, type_id, space, dcpl_id, dapl_id))) - HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to create dataset") + if(NULL == (dset = H5D__create(loc.oloc->file, type_id, space, dcpl_id, dapl_id))) + HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to create dataset") /* Register the new dataset to get an ID for it */ if((ret_value = H5I_register(H5I_DATASET, dset, TRUE)) < 0) @@ -481,8 +481,8 @@ H5Dget_create_plist(hid_t dset_id) if(NULL == (dataset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "not a dataset") - if((ret_value = H5D__get_create_plist(dataset)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, H5I_INVALID_HID, "Can't get creation plist") + if((ret_value = H5D_get_create_plist(dataset)) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, H5I_INVALID_HID, "Can't get creation plist") done: FUNC_LEAVE_API(ret_value) @@ -1130,3 +1130,153 @@ done: FUNC_LEAVE_API(ret_value); } /* H5Dget_chunk_storage_size() */ + +/*------------------------------------------------------------------------- + * Function: H5Dget_num_chunks + * + * Purpose: Retrieves the number of chunks that have nonempty intersection + * with a specified selection. + * + * Note: Currently, this function only gets the number of all written + * chunks, regardless the dataspace. + * + * Parameters: + * hid_t dset_id; IN: Chunked dataset ID + * hid_t fspace_id; IN: File dataspace ID + * hsize_t *nchunks; OUT:: Number of non-empty chunks + * + * Return: Non-negative on success, negative on failure + * + * Programmer: Binh-Minh Ribler + * August 2018 (HDFFV-10615) + * + *------------------------------------------------------------------------- + */ +herr_t +H5Dget_num_chunks(hid_t dset_id, hid_t fspace_id, hsize_t *nchunks) +{ + H5D_t *dset = NULL; + const H5S_t *space; /* Dataspace for dataset */ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_API(FAIL) + H5TRACE3("e", "ii*h", dset_id, fspace_id, nchunks); + + /* Check arguments */ + if(NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset") + if(NULL == (space = (const H5S_t *)H5I_object_verify(fspace_id, H5I_DATASPACE))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace ID") + if(NULL == nchunks) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid argument (null)") + + if(H5D_CHUNKED != dset->shared->layout.type) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a chunked dataset") + + /* Get the number of written chunks */ + if(H5D__get_num_chunks(dset, space, nchunks) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "error getting number of chunks") + +done: + FUNC_LEAVE_API(ret_value); +} /* H5Dget_num_chunks() */ + + +/*------------------------------------------------------------------------- + * Function: H5Dget_chunk_info + * + * Purpose: Retrieves information about a chunk specified by its index. + * + * Parameters: + * hid_t dset_id; IN: Chunked dataset ID + * hid_t fspace_id; IN: File dataspace ID + * hsize_t chk_idx; IN: Index of allocated/written chunk + * hsize_t *offset OUT: Offset coordinates of the chunk + * unsigned *filter_mask OUT: Filter mask + * haddr_t *addr OUT: Address of the chunk + * hsize_t *size OUT: Size of the chunk + * + * Return: Non-negative on success, negative on failure + * + * Programmer: Binh-Minh Ribler + * August 2018 (HDFFV-10615) + * + *------------------------------------------------------------------------- + */ +herr_t +H5Dget_chunk_info(hid_t dset_id, hid_t fspace_id, hsize_t chk_idx, hsize_t *offset, unsigned *filter_mask, haddr_t *addr, hsize_t *size) +{ + H5D_t *dset = NULL; + const H5S_t *space; /* Dataspace for dataset */ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_API(FAIL) + H5TRACE7("e", "iih*h*Iu*a*h", dset_id, fspace_id, chk_idx, offset, filter_mask, + addr, size); + + /* Check arguments */ + if(NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset ID") + if(NULL == (space = (const H5S_t *)H5I_object_verify(fspace_id, H5I_DATASPACE))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace ID") + if(NULL == offset && NULL == filter_mask && NULL == addr && NULL == size) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid arguments, must have at least one non-null output argument") + + if(H5D_CHUNKED != dset->shared->layout.type) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a chunked dataset") + + /* Call private function to get the chunk info given the chunk's index */ + if(H5D__get_chunk_info(dset, space, chk_idx, offset, filter_mask, addr, size) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get chunk info") + +done: + FUNC_LEAVE_API(ret_value); +} /* H5Dget_chunk_info() */ + + +/*------------------------------------------------------------------------- + * Function: H5Dget_chunk_info_by_coord + * + * Purpose: Retrieves information about a chunk specified by its offset + * coordinates. + * + * Parameters: + * hid_t dset_id IN: Chunked dataset ID + * hsize_t *offset IN: Offset coordinates of the chunk + * unsigned *filter_mask OUT: Filter mask + * haddr_t *addr OUT: Address of the chunk + * hsize_t *size OUT: Size of the chunk + * + * Return: Non-negative on success, negative on failure + * + * Programmer: Binh-Minh Ribler + * August 2018 (HDFFV-10615) + * + *------------------------------------------------------------------------- + */ +herr_t +H5Dget_chunk_info_by_coord(hid_t dset_id, const hsize_t *offset, unsigned *filter_mask, haddr_t *addr, hsize_t *size) +{ + H5D_t *dset = NULL; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE5("e", "i*h*Iu*a*h", dset_id, offset, filter_mask, addr, size); + + /* Check arguments */ + if(NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset") + if(NULL == offset) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid argument (null)") + if(NULL == filter_mask && NULL == addr && NULL == size) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid arguments, must have at least one non-null output argument") + + if(H5D_CHUNKED != dset->shared->layout.type) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a chunked dataset") + + /* Internal function to get the chunk info */ + if (H5D__get_chunk_info_by_coord(dset, offset, filter_mask, addr, size) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't get chunk info") +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Dget_chunk_info_by_coord() */ diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c index c3f4a95..553d75c 100644 --- a/src/H5Dchunk.c +++ b/src/H5Dchunk.c @@ -216,6 +216,18 @@ typedef struct H5D_chunk_readvv_ud_t { const H5D_t *dset; /* Dataset to operate on */ } H5D_chunk_readvv_ud_t; +/* Typedef for chunk info iterator callback */ +typedef struct H5D_chunk_info_iter_ud_t { + hsize_t scaled[H5O_LAYOUT_NDIMS]; /* Logical offset of the chunk */ + hsize_t ndims; /* Number of dimensions in the dataset */ + uint32_t nbytes; /* Size of stored data in the chunk */ + unsigned filter_mask; /* Excluded filters */ + haddr_t chunk_addr; /* Address of the chunk in file */ + hsize_t chunk_idx; /* Chunk index, where the iteration needs to stop */ + hsize_t curr_idx; /* Current index, where the iteration is */ + hbool_t found; /* Whether the chunk was found */ +} H5D_chunk_info_iter_ud_t; + /* Callback info for file selection iteration */ typedef struct H5D_chunk_file_iter_ud_t { H5D_chunk_map_t *fm; /* File->memory chunk mapping info */ @@ -252,6 +264,12 @@ static herr_t H5D__chunk_flush(H5D_t *dset); static herr_t H5D__chunk_io_term(const H5D_chunk_map_t *fm); static herr_t H5D__chunk_dest(H5D_t *dset); +/* Chunk query operation callbacks */ +static int H5D__get_num_chunks_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata); +static int H5D__get_chunk_info_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata); +static int H5D__get_chunk_info_by_coord_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata); + + /* "Nonexistent" layout operation callback */ static ssize_t H5D__nonexistent_readvv(const H5D_io_info_t *io_info, @@ -495,7 +513,7 @@ H5D__chunk_direct_read(const H5D_t *dset, hsize_t *offset, uint32_t* filters, hsize_t scaled[H5S_MAX_RANK]; /* Scaled coordinates for this chunk */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL_TAG(dset->oloc.addr) + FUNC_ENTER_PACKAGE_TAG(dset->oloc.addr) /* Check args */ HDassert(dset && H5D_CHUNKED == layout->type); @@ -565,7 +583,7 @@ H5D__chunk_direct_read(const H5D_t *dset, hsize_t *offset, uint32_t* filters, *filters = udata.filter_mask; done: - FUNC_LEAVE_NOAPI_VOL_TAG(ret_value) + FUNC_LEAVE_NOAPI_TAG(ret_value) } /* end H5D__chunk_direct_read() */ @@ -590,7 +608,7 @@ H5D__get_chunk_storage_size(H5D_t *dset, const hsize_t *offset, hsize_t *storage H5D_chunk_ud_t udata; /* User data for querying chunk info */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL_TAG(dset->oloc.addr) + FUNC_ENTER_PACKAGE_TAG(dset->oloc.addr) /* Check args */ HDassert(dset && H5D_CHUNKED == layout->type); @@ -663,7 +681,7 @@ H5D__get_chunk_storage_size(H5D_t *dset, const hsize_t *offset, hsize_t *storage *storage_size = dset->shared->layout.u.chunk.size; done: - FUNC_LEAVE_NOAPI_VOL_TAG(ret_value) + FUNC_LEAVE_NOAPI_TAG(ret_value) } /* H5D__get_chunk_storage_size */ @@ -695,6 +713,9 @@ H5D__chunk_set_info_real(H5O_layout_chunk_t *layout, unsigned ndims, /* Compute the # of chunks in dataset dimensions */ for(u = 0, layout->nchunks = 1, layout->max_nchunks = 1; u < ndims; u++) { + /* Sanity check */ + HDassert(layout->dim[u] > 0); + /* Round up to the next integer # of chunks, to accommodate partial chunks */ layout->chunks[u] = ((curr_dims[u] + layout->dim[u]) - 1) / layout->dim[u]; if(H5S_UNLIMITED == max_dims[u]) @@ -949,7 +970,10 @@ H5D__chunk_init(H5F_t *f, const H5D_t *dset, hid_t dapl_id) /* Initial scaled dimension sizes */ if(dset->shared->layout.u.chunk.dim[u] == 0) HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "chunk size must be > 0, dim = %u ", u) - rdcc->scaled_dims[u] = dset->shared->curr_dims[u] / dset->shared->layout.u.chunk.dim[u]; + + /* Round up to the next integer # of chunks, to accommodate partial chunks */ + rdcc->scaled_dims[u] = (dset->shared->curr_dims[u] + dset->shared->layout.u.chunk.dim[u] - 1) / + dset->shared->layout.u.chunk.dim[u]; if( !(scaled_power2up = H5VM_power2up(rdcc->scaled_dims[u])) ) HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get the next power of 2") @@ -1489,6 +1513,9 @@ H5D__create_chunk_map_single(H5D_chunk_map_t *fm, const H5D_io_info_t /* Set chunk location & hyperslab size */ for(u = 0; u < fm->f_ndims; u++) { + /* Validate this chunk dimension */ + if(fm->layout->u.chunk.dim[u] == 0) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "chunk size must be > 0, dim = %u ", u) HDassert(sel_start[u] == sel_end[u]); chunk_info->scaled[u] = sel_start[u] / fm->layout->u.chunk.dim[u]; coords[u] = chunk_info->scaled[u] * fm->layout->u.chunk.dim[u]; @@ -1575,6 +1602,9 @@ H5D__create_chunk_file_map_hyper(H5D_chunk_map_t *fm, const H5D_io_info_t /* Set initial chunk location & hyperslab size */ for(u = 0; u < fm->f_ndims; u++) { + /* Validate this chunk dimension */ + if(fm->layout->u.chunk.dim[u] == 0) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "chunk size must be > 0, dim = %u ", u) scaled[u] = start_scaled[u] = sel_start[u] / fm->layout->u.chunk.dim[u]; coords[u] = start_coords[u] = scaled[u] * fm->layout->u.chunk.dim[u]; end[u] = (coords[u] + fm->chunk_dim[u]) - 1; @@ -2797,6 +2827,7 @@ H5D__chunk_hash_val(const H5D_shared_t *shared, const hsize_t *scaled) hsize_t val; /* Intermediate value */ unsigned ndims = shared->ndims; /* Rank of dataset */ unsigned ret = 0; /* Value to return */ + unsigned u; /* Local index variable */ FUNC_ENTER_STATIC_NOERR @@ -2807,17 +2838,11 @@ H5D__chunk_hash_val(const H5D_shared_t *shared, const hsize_t *scaled) /* If the fastest changing dimension doesn't have enough entropy, use * other dimensions too */ - if(ndims > 1 && shared->cache.chunk.scaled_dims[ndims - 1] <= shared->cache.chunk.nslots) { - unsigned u; /* Local index variable */ - - val = scaled[0]; - for(u = 1; u < ndims; u++) { - val <<= shared->cache.chunk.scaled_encode_bits[u]; - val ^= scaled[u]; - } /* end for */ - } /* end if */ - else - val = scaled[ndims - 1]; + val = scaled[0]; + for(u = 1; u < ndims; u++) { + val <<= shared->cache.chunk.scaled_encode_bits[u]; + val ^= scaled[u]; + } /* end for */ /* Modulo value against the number of array slots */ ret = (unsigned)(val % shared->cache.chunk.nslots); @@ -2905,9 +2930,6 @@ H5D__chunk_lookup(const H5D_t *dset, const hsize_t *scaled, /* Check for cached information */ if(!H5D__chunk_cinfo_cache_found(&dset->shared->cache.chunk.last, udata)) { H5D_chk_idx_info_t idx_info; /* Chunked index info */ -#ifdef H5_HAVE_PARALLEL - H5P_coll_md_read_flag_t temp_cmr; /* Temp value to hold the coll metadata read setting */ -#endif /* H5_HAVE_PARALLEL */ /* Compose chunked index info struct */ idx_info.f = dset->oloc.file; @@ -2916,25 +2938,18 @@ H5D__chunk_lookup(const H5D_t *dset, const hsize_t *scaled, idx_info.storage = &dset->shared->layout.storage.u.chunk; #ifdef H5_HAVE_PARALLEL - if(H5F_HAS_FEATURE(idx_info.f, H5FD_FEAT_HAS_MPI)) { - /* disable collective metadata read for chunk indexes - as it is highly unlikely that users would read the - same chunks from all processes. MSC - might turn on - for root node? */ - temp_cmr = H5F_COLL_MD_READ(idx_info.f); - H5F_set_coll_md_read(idx_info.f, H5P_FORCE_FALSE); - } /* end if */ + /* Disable collective metadata read for chunk indexes as it is + * highly unlikely that users would read the same chunks from all + * processes. + */ + if(H5F_HAS_FEATURE(idx_info.f, H5FD_FEAT_HAS_MPI)) + H5CX_set_coll_metadata_read(FALSE); #endif /* H5_HAVE_PARALLEL */ /* Go get the chunk information */ if((dset->shared->layout.storage.u.chunk.ops->get_addr)(&idx_info, udata) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query chunk address") -#ifdef H5_HAVE_PARALLEL - if(H5F_HAS_FEATURE(idx_info.f, H5FD_FEAT_HAS_MPI)) - H5F_set_coll_md_read(idx_info.f, temp_cmr); -#endif /* H5_HAVE_PARALLEL */ - /* * Cache the information retrieved. * @@ -4041,6 +4056,9 @@ H5D__chunk_allocate(const H5D_io_info_t *io_info, hbool_t full_overwrite, hsize_ * assume here that all elements of space_dim are > 0. This is checked at * the top of this function. */ for(op_dim=0; op_dim<space_ndims; op_dim++) { + /* Validate this chunk dimension */ + if(chunk_dim[op_dim] == 0) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "chunk size must be > 0, dim = %u ", op_dim) min_unalloc[op_dim] = (old_dim[op_dim] + chunk_dim[op_dim] - 1) / chunk_dim[op_dim]; max_unalloc[op_dim] = (space_dim[op_dim] - 1) / chunk_dim[op_dim]; @@ -4484,13 +4502,17 @@ H5D__chunk_update_old_edge_chunks(H5D_t *dset, hsize_t old_dim[]) /* Start off with this dimension marked as not needing to be modified */ new_full_dim[op_dim] = FALSE; + /* Validate this chunk dimension */ + if(chunk_dim[op_dim] == 0) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "chunk size must be > 0, dim = %u ", op_dim) + /* Calculate offset of first previously incomplete chunk in this * dimension */ - old_edge_chunk_sc[op_dim] = (old_dim[op_dim] / chunk_dim[op_dim]); + old_edge_chunk_sc[op_dim] = (old_dim[op_dim] / chunk_dim[op_dim]); /* Calculate the largest offset of chunks that might need to be * modified in this dimension */ - max_edge_chunk_sc[op_dim] = MIN((old_dim[op_dim] - 1) / chunk_dim[op_dim], + max_edge_chunk_sc[op_dim] = MIN((old_dim[op_dim] - 1) / chunk_dim[op_dim], MAX((space_dim[op_dim] / chunk_dim[op_dim]), 1) - 1); /* Check for old_dim aligned with chunk boundary in this dimension, if @@ -4501,7 +4523,7 @@ H5D__chunk_update_old_edge_chunks(H5D_t *dset, hsize_t old_dim[]) /* Check if the dataspace expanded enough to cause the old edge chunks * in this dimension to become full */ - if((space_dim[op_dim]/chunk_dim[op_dim]) >= (old_edge_chunk_sc[op_dim] + 1)) + if((space_dim[op_dim]/chunk_dim[op_dim]) >= (old_edge_chunk_sc[op_dim] + 1)) new_full_dim[op_dim] = TRUE; } /* end for */ @@ -4626,6 +4648,8 @@ H5D__chunk_collective_fill(const H5D_t *dset, H5D_chunk_coll_info_t *chunk_info, HGOTO_ERROR(H5E_INTERNAL, H5E_MPI, FAIL, "Can't retrieve MPI size") /* Distribute evenly the number of blocks between processes. */ + if(mpi_size == 0) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "Resulted in division by zero") num_blocks = chunk_info->num_io / mpi_size; /* value should be the same on all procs */ /* after evenly distributing the blocks between processes, are @@ -5066,6 +5090,10 @@ H5D__chunk_prune_by_extent(H5D_t *dset, const hsize_t *old_dim) HDmemset(min_mod_chunk_sc, 0, sizeof(min_mod_chunk_sc)); HDmemset(max_mod_chunk_sc, 0, sizeof(max_mod_chunk_sc)); for(op_dim = 0; op_dim < (unsigned)space_ndims; op_dim++) { + /* Validate this chunk dimension */ + if(chunk_dim[op_dim] == 0) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "chunk size must be > 0, dim = %u ", op_dim) + /* Calculate the largest offset of chunks that might need to be * modified in this dimension */ max_mod_chunk_sc[op_dim] = (old_dim[op_dim] - 1) / chunk_dim[op_dim]; @@ -5721,9 +5749,12 @@ H5D__chunk_copy_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) /* (background buffer has already been zeroed out, if not expanding) */ if(udata->cpy_info->expand_ref) { size_t ref_count; + size_t dt_size; /* Determine # of reference elements to copy */ - ref_count = nbytes / H5T_get_size(udata->dt_src); + if((dt_size = H5T_get_size(udata->dt_src)) == 0) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "size must not be 0") + ref_count = nbytes / dt_size; /* Copy the reference elements */ if(H5O_copy_expand_ref(udata->file_src, buf, udata->idx_info_dst->f, bkg, ref_count, H5T_get_ref_type(udata->dt_src), udata->cpy_info) < 0) @@ -6726,3 +6757,374 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__chunk_format_convert() */ + +/*------------------------------------------------------------------------- + * Function: H5D__get_num_chunks_cb + * + * Purpose: Callback function that increments the number of written + * chunks in the dataset. + * + * Note: Currently, this function only gets the number of all written + * chunks, regardless the dataspace. + * + * Return: H5_ITER_CONT + * + * Programmer: Binh-Minh Ribler + * September 2018 (HDFFV-10615) + * + *------------------------------------------------------------------------- + */ +static int +H5D__get_num_chunks_cb(const H5D_chunk_rec_t H5_ATTR_UNUSED *chunk_rec, void *_udata) +{ + hsize_t *num_chunks = (hsize_t *)_udata; + int ret_value = H5_ITER_CONT; /* Callback return value */ + + FUNC_ENTER_STATIC_NOERR + + HDassert(num_chunks); + + (*num_chunks)++; + + FUNC_LEAVE_NOAPI(ret_value) +} /* H5D__get_num_chunks_cb() */ + + +/*------------------------------------------------------------------------- + * Function: H5D__get_num_chunks + * + * Purpose: Gets the number of written chunks in a dataset. + * + * Note: Currently, this function only gets the number of all written + * chunks, regardless the dataspace. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Binh-Minh Ribler + * September 2018 (HDFFV-10615) + * + *------------------------------------------------------------------------- + */ +herr_t +H5D__get_num_chunks(const H5D_t *dset, const H5S_t H5_ATTR_UNUSED *space, hsize_t *nchunks) +{ + H5D_chk_idx_info_t idx_info; /* Chunked index info */ + hsize_t num_chunks = 0; /* Number of written chunks */ + H5D_rdcc_ent_t *ent; /* Cache entry */ + const H5D_rdcc_t *rdcc = NULL; /* Raw data chunk cache */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_PACKAGE_TAG(dset->oloc.addr) + + HDassert(dset); + HDassert(dset->shared); + HDassert(space); + HDassert(nchunks); + + /* Get the raw data chunk cache */ + rdcc = &(dset->shared->cache.chunk); + HDassert(rdcc); + + /* Search for cached chunks that haven't been written out */ + for(ent = rdcc->head; ent; ent = ent->next) + /* Flush the chunk out to disk, to make certain the size is correct later */ + if(H5D__chunk_flush_entry(dset, ent, FALSE) < 0) + HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "cannot flush indexed storage buffer") + + /* Compose chunked index info struct */ + idx_info.f = dset->oloc.file; + idx_info.pline = &dset->shared->dcpl_cache.pline; + idx_info.layout = &dset->shared->layout.u.chunk; + idx_info.storage = &dset->shared->layout.storage.u.chunk; + + /* If the dataset is not written, number of chunks will be 0 */ + if(!H5F_addr_defined(idx_info.storage->idx_addr)) { + *nchunks = 0; + HGOTO_DONE(SUCCEED); + } + else { + /* Iterate over the allocated chunks */ + if((dset->shared->layout.storage.u.chunk.ops->iterate)(&idx_info, H5D__get_num_chunks_cb, &num_chunks) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve allocated chunk information from index") + *nchunks = num_chunks; + } + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5D__get_num_chunks() */ + + +/*------------------------------------------------------------------------- + * Function: H5D__get_chunk_info_cb + * + * Purpose: Get the chunk info of the desired chunk, given by its index. + * + * Return: Success: H5_ITER_CONT or H5_ITER_STOP + * Failure: Negative (H5_ITER_ERROR) + * + * Programmer: Binh-Minh Ribler + * September 2018 (HDFFV-10615) + * + *------------------------------------------------------------------------- + */ +static int +H5D__get_chunk_info_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) +{ + H5D_chunk_info_iter_ud_t *chunk_info = (H5D_chunk_info_iter_ud_t *)_udata; + hsize_t ii = 0; /* Dimension index */ + int ret_value = H5_ITER_CONT; /* Callback return value */ + + FUNC_ENTER_STATIC_NOERR + + /* Check args */ + HDassert(chunk_rec); + HDassert(chunk_info); + + /* If this is the desired chunk, retrieve its info and stop iterating */ + if (chunk_info->curr_idx == chunk_info->chunk_idx) { + chunk_info->filter_mask = chunk_rec->filter_mask; + chunk_info->chunk_addr = chunk_rec->chunk_addr; + chunk_info->nbytes = chunk_rec->nbytes; + for (ii = 0; ii < chunk_info->ndims; ii++) + chunk_info->scaled[ii] = chunk_rec->scaled[ii]; + chunk_info->found = TRUE; + + /* Stop iterating */ + ret_value = H5_ITER_STOP; + } + /* Iterate the next chunk */ + else + chunk_info->curr_idx++; + + FUNC_LEAVE_NOAPI(ret_value) +} /* H5D__get_chunk_info_cb() */ + + +/*------------------------------------------------------------------------- + * Function: H5D__get_chunk_info + * + * Purpose: Iterate over the chunks in the dataset to get the info + * of the desired chunk. + * + * Note: Currently, this function only gets the number of all written + * chunks, regardless the dataspace. + * + * Return: Success: SUCCEED + * Failure: FAIL + * + * Programmer: Binh-Minh Ribler + * September 2018 (HDFFV-10615) + * + *------------------------------------------------------------------------- + */ +herr_t +H5D__get_chunk_info(const H5D_t *dset, const H5S_t H5_ATTR_UNUSED *space, hsize_t index, hsize_t *offset, unsigned *filter_mask, haddr_t *addr, hsize_t *size) +{ + H5D_chk_idx_info_t idx_info; /* Chunked index info */ + H5D_chunk_info_iter_ud_t udata; /* User data for callback */ + const H5D_rdcc_t *rdcc = NULL; /* Raw data chunk cache */ + H5D_rdcc_ent_t *ent; /* Cache entry index */ + hsize_t ii = 0; /* Dimension index */ + herr_t ret_value = SUCCEED;/* Return value */ + + FUNC_ENTER_PACKAGE_TAG(dset->oloc.addr) + + HDassert(dset); + HDassert(dset->shared); + HDassert(space); + + /* Get the raw data chunk cache */ + rdcc = &(dset->shared->cache.chunk); + HDassert(rdcc); + + /* Search for cached chunks that haven't been written out */ + for(ent = rdcc->head; ent; ent = ent->next) + /* Flush the chunk out to disk, to make certain the size is correct later */ + if(H5D__chunk_flush_entry(dset, ent, FALSE) < 0) + HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "cannot flush indexed storage buffer") + + /* Compose chunked index info struct */ + idx_info.f = dset->oloc.file; + idx_info.pline = &dset->shared->dcpl_cache.pline; + idx_info.layout = &dset->shared->layout.u.chunk; + idx_info.storage = &dset->shared->layout.storage.u.chunk; + + /* Set addr & size for when dset is not written or queried chunk is not found */ + if (addr) + *addr = HADDR_UNDEF; + if (size) + *size = 0; + + /* If the dataset is not written, return without error */ + if(!H5F_addr_defined(idx_info.storage->idx_addr)) + HGOTO_DONE(SUCCEED); + + /* Initialize before iteration */ + udata.chunk_idx = index; + udata.curr_idx = 0; + udata.ndims = dset->shared->ndims; + udata.nbytes = 0; + udata.filter_mask = 0; + udata.chunk_addr = HADDR_UNDEF; + udata.found = FALSE; + + /* Iterate over the allocated chunks */ + if((dset->shared->layout.storage.u.chunk.ops->iterate)(&idx_info, H5D__get_chunk_info_cb, &udata) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve allocated chunk information from index") + + /* Obtain requested info if the chunk is found */ + if (udata.found) { + if (filter_mask) + *filter_mask = udata.filter_mask; + if (addr) + *addr = udata.chunk_addr; + if (size) + *size = udata.nbytes; + if (offset) + for (ii = 0; ii < udata.ndims; ii++) + offset[ii] = udata.scaled[ii] * dset->shared->layout.u.chunk.dim[ii]; + } + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5D__get_chunk_info() */ + + +/*------------------------------------------------------------------------- + * Function: H5D__get_chunk_info_by_coord_cb + * + * Purpose: Get the chunk info of the desired chunk, given its offset + * coordinates. + * + * Return: Success: H5_ITER_CONT or H5_ITER_STOP + * Failure: Negative (H5_ITER_ERROR) + * + * Programmer: Binh-Minh Ribler + * September 2018 (HDFFV-10615) + * + *------------------------------------------------------------------------- + */ +static int +H5D__get_chunk_info_by_coord_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) +{ + hsize_t ii; + H5D_chunk_info_iter_ud_t *chunk_info = (H5D_chunk_info_iter_ud_t *)_udata; + hbool_t different = FALSE; /* TRUE when a scaled value pair mismatch */ + int ret_value = H5_ITER_CONT; /* Callback return value */ + + FUNC_ENTER_STATIC_NOERR + + /* Check args */ + HDassert(chunk_rec); + HDassert(chunk_info); + + /* Going through the scaled, stop when a mismatch is found */ + for (ii = 0; ii < chunk_info->ndims && !different; ii++) + if (chunk_info->scaled[ii] != chunk_rec->scaled[ii]) + different = TRUE; + + /* Same scaled coords means the chunk is found, copy the chunk info */ + if (!different) { + chunk_info->nbytes = chunk_rec->nbytes; + chunk_info->filter_mask = chunk_rec->filter_mask; + chunk_info->chunk_addr = chunk_rec->chunk_addr; + chunk_info->found = TRUE; + + /* Stop iterating */ + ret_value = H5_ITER_STOP; + } + + FUNC_LEAVE_NOAPI(ret_value) +} /* H5D__get_chunk_info_by_coord_cb() */ + + +/*------------------------------------------------------------------------- + * Function: H5D__get_chunk_info_by_coord + * + * Purpose: Iterate over the chunks in the dataset to get the info + * of the desired chunk, given by its offset coordinates. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Binh-Minh Ribler + * September 2018 (HDFFV-10615) + * + *------------------------------------------------------------------------- + */ +herr_t +H5D__get_chunk_info_by_coord(const H5D_t *dset, const hsize_t *offset, unsigned* filter_mask, haddr_t *addr, hsize_t *size) +{ + const H5O_layout_t *layout = NULL; /* Dataset layout */ + const H5D_rdcc_t *rdcc = NULL; /* Raw data chunk cache */ + H5D_rdcc_ent_t *ent; /* Cache entry index */ + H5D_chk_idx_info_t idx_info; /* Chunked index info */ + H5D_chunk_info_iter_ud_t udata; /* User data for callback */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_PACKAGE_TAG(dset->oloc.addr) + + /* Check args */ + HDassert(dset); + HDassert(dset->shared); + HDassert(offset); + + /* Get dataset layout and raw data chunk cache */ + layout = &(dset->shared->layout); + rdcc = &(dset->shared->cache.chunk); + HDassert(layout); + HDassert(rdcc); + HDassert(H5D_CHUNKED == layout->type); + + /* Search for cached chunks that haven't been written out */ + for(ent = rdcc->head; ent; ent = ent->next) + /* Flush the chunk out to disk, to make certain the size is correct later */ + if(H5D__chunk_flush_entry(dset, ent, FALSE) < 0) + HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "cannot flush indexed storage buffer") + + /* Compose chunked index info struct */ + idx_info.f = dset->oloc.file; + idx_info.pline = &dset->shared->dcpl_cache.pline; + idx_info.layout = &dset->shared->layout.u.chunk; + idx_info.storage = &dset->shared->layout.storage.u.chunk; + + /* Set addr & size for when dset is not written or queried chunk is not found */ + if (addr) + *addr = HADDR_UNDEF; + if (size) + *size = 0; + + /* If the dataset is not written, return without errors */ + if(!H5F_addr_defined(idx_info.storage->idx_addr)) { + HGOTO_DONE(SUCCEED); + } + + /* Calculate the scaled of this chunk */ + H5VM_chunk_scaled(dset->shared->ndims, offset, layout->u.chunk.dim, udata.scaled); + udata.scaled[dset->shared->ndims] = 0; + + /* Initialize before iteration */ + udata.ndims = dset->shared->ndims; + udata.nbytes = 0; + udata.filter_mask = 0; + udata.chunk_addr = HADDR_UNDEF; + udata.found = FALSE; + + /* Iterate over the allocated chunks to find the requested chunk */ + if((dset->shared->layout.storage.u.chunk.ops->iterate)(&idx_info, H5D__get_chunk_info_by_coord_cb, &udata) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve information of the chunk by its scaled coordinates") + + /* If the chunk is found, return the filter mask and chunk address/size */ + if (udata.found) { + if (filter_mask) + *filter_mask = udata.filter_mask; + if (addr) + *addr = udata.chunk_addr; + if (size) + *size = udata.nbytes; + } +done: + FUNC_LEAVE_NOAPI_TAG(ret_value) +} /* end H5D__get_chunk_info_by_coord() */ + diff --git a/src/H5Dint.c b/src/H5Dint.c index 3ba38c4..ea4245b 100644 --- a/src/H5Dint.c +++ b/src/H5Dint.c @@ -25,6 +25,7 @@ #include "H5Dpkg.h" /* Datasets */ #include "H5CXprivate.h" /* API Contexts */ #include "H5Eprivate.h" /* Error handling */ +#include "H5Fprivate.h" /* Files */ #include "H5FLprivate.h" /* Free Lists */ #include "H5FOprivate.h" /* File objects */ #include "H5Iprivate.h" /* IDs */ @@ -58,9 +59,11 @@ static herr_t H5D__build_file_prefix(const H5D_t *dset, hid_t dapl_id, static herr_t H5D__open_oid(H5D_t *dataset, hid_t dapl_id); static herr_t H5D__init_storage(const H5D_io_info_t *io_info, hbool_t full_overwrite, hsize_t old_dim[]); -static herr_t H5D__get_storage_size_real(const H5D_t *dset, hsize_t *storage_size); static herr_t H5D__append_flush_setup(H5D_t *dset, hid_t dapl_id); static herr_t H5D__close_cb(H5D_t *dataset); +static herr_t H5D__use_minimized_dset_headers(H5F_t *file, H5D_t *dset, hbool_t *minimize); +static herr_t H5D__prepare_minimized_oh(H5F_t *file, H5D_t *dset, H5O_loc_t *oloc); +static size_t H5D__calculate_minimum_header_size(H5F_t *file, H5D_t *dset, H5O_t *ohdr); /*********************/ /* Package Variables */ @@ -299,7 +302,7 @@ H5D__create_named(const H5G_loc_t *loc, const char *name, hid_t type_id, H5D_obj_create_t dcrt_info; /* Information for dataset creation */ H5D_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check arguments */ HDassert(loc); @@ -330,52 +333,11 @@ H5D__create_named(const H5G_loc_t *loc, const char *name, hid_t type_id, ret_value = (H5D_t *)ocrt_info.new_obj; done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__create_named() */ /*------------------------------------------------------------------------- - * Function: H5D__create_anon - * - * Purpose: Internal routine to create a new anonymous dataset. - * - * Note: This routine is needed so that there's a non-API routine for - * creating datasets that can set up VOL / SWMR info - * (which need a DXPL). - * - * Return: Success: Non-NULL, pointer to new dataset object. - * Failure: NULL - * - * Programmer: Quincey Koziol - * December 9, 2017 - * - *------------------------------------------------------------------------- - */ -H5D_t * -H5D__create_anon(H5F_t *file, hid_t type_id, const H5S_t *space, hid_t dcpl_id, - hid_t dapl_id) -{ - H5D_t *ret_value = NULL; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check arguments */ - HDassert(file); - HDassert(type_id != H5P_DEFAULT); - HDassert(space); - HDassert(dcpl_id != H5P_DEFAULT); - HDassert(dapl_id != H5P_DEFAULT); - - /* Build and open the dataset */ - if(NULL == (ret_value = H5D__create(file, type_id, space, dcpl_id, dapl_id))) - HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "unable to create dataset") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5D__create_anon() */ - - -/*------------------------------------------------------------------------- * Function: H5D__get_space_status * * Purpose: Returns the status of dataspace allocation. @@ -390,7 +352,7 @@ H5D__get_space_status(const H5D_t *dset, H5D_space_status_t *allocation) { herr_t ret_value = SUCCEED; - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE HDassert(dset); @@ -423,7 +385,7 @@ H5D__get_space_status(const H5D_t *dset, H5D_space_status_t *allocation) HGOTO_ERROR(H5E_DATASET, H5E_OVERFLOW, FAIL, "size of dataset's storage overflowed") /* Difficult to error check, since the error value is 0 and 0 is a valid value... :-/ */ - if(H5D__get_storage_size_real(dset, &space_allocated) < 0) + if(H5D__get_storage_size(dset, &space_allocated) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get size of dataset's storage") /* Decide on how much of the space is allocated */ @@ -444,7 +406,7 @@ H5D__get_space_status(const H5D_t *dset, H5D_space_status_t *allocation) } /* end else */ done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__get_space_status() */ @@ -662,6 +624,211 @@ done: /*------------------------------------------------------------------------- + * Function: H5D__use_minimized_dset_headers + * + * Purpose: Compartmentalize check for file- or dcpl-set values indicating + * to create a "minimized" dataset object header. + * Upon success, write resulting value to out pointer `minimize`. + * + * Return: Success: SUCCEED (0) (non-negative value) + * Failure: FAIL (-1) (negative value) + * + * Programmer: Jacob Smith + * 16 August 2018 + *------------------------------------------------------------------------- + */ +static herr_t +H5D__use_minimized_dset_headers(H5F_t *file, H5D_t *dset, hbool_t *minimize) +{ + H5P_genplist_t *plist = NULL; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + HDassert(file); + HDassert(dset); + HDassert(minimize); + + plist = H5P_object_verify(dset->shared->dcpl_id, H5P_DATASET_CREATE); + if(NULL == plist) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "problem getting dcpl") + if(H5P_get(plist, H5D_CRT_MIN_DSET_HDR_SIZE_NAME, minimize) == FAIL) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get minimize value from dcpl") + + if(FALSE == *minimize) + *minimize = H5F_get_min_dset_ohdr(file); + +done: + if(FAIL == ret_value) + *minimize = FALSE; + FUNC_LEAVE_NOAPI(ret_value); +} /* H5D__use_minimized_dset_headers */ + + +/*------------------------------------------------------------------------- + * Function: H5D__calculate_minimium_header_size + * + * Purpose: Calculate the size required for the minimized object header. + * + * Return: Success: Positive value > 0 + * Failure: 0 + * + * Programmer: Jacob Smith + * 16 August 2018 + *------------------------------------------------------------------------- + */ +static size_t +H5D__calculate_minimum_header_size(H5F_t *file, H5D_t *dset, H5O_t *ohdr) +{ + H5T_t *type = NULL; + H5O_fill_t *fill_prop = NULL; + hbool_t use_at_least_v18 = FALSE; + const char continuation[1] = ""; /* requred for work-around */ + size_t get_value = 0; + size_t ret_value = 0; + + FUNC_ENTER_STATIC + + HDassert(file); + HDassert(dset); + HDassert(ohdr); + + type = dset->shared->type; + fill_prop = &(dset->shared->dcpl_cache.fill); + use_at_least_v18 = (H5F_LOW_BOUND(file) >= H5F_LIBVER_V18); + + /* Datatype message size */ + get_value = H5O_msg_size_oh(file, ohdr, H5O_DTYPE_ID, type, 0); + if (get_value == 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, 0, "Can't get size of datatype message") + ret_value += get_value; + + /* Shared Dataspace message size */ + get_value = H5O_msg_size_oh(file, ohdr, H5O_SDSPACE_ID, dset->shared->space, 0); + if (get_value == 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, 0, "can't get size of dataspace message") + ret_value += get_value; + + /* "Layout" message size */ + get_value = H5O_msg_size_oh(file, ohdr, H5O_LAYOUT_ID, &dset->shared->layout, 0); + if (get_value == 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, 0, "can't get size of layout message") + ret_value += get_value; + + /* Fill Value message size */ + get_value = H5O_msg_size_oh(file, ohdr, H5O_FILL_NEW_ID, fill_prop, 0); + if (get_value == 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, 0, "can't get size of fill value message") + ret_value += get_value; + + /* "Continuation" message size */ + /* message pointer "continuation" is unused by raw get function, however, + * a null pointer would be intercepted by an assert in H5O_msg_size_oh(). + */ + get_value = H5O_msg_size_oh(file, ohdr, H5O_CONT_ID, continuation, 0); + if (get_value == 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, 0, "can't get size of continuation message") + ret_value += get_value; + + /* Fill Value (backwards compatability) message size */ + if(fill_prop->buf && !use_at_least_v18) { + H5O_fill_t old_fill_prop; /* Copy for writing "old" fill value */ + + /* Shallow copy the fill value property */ + /* guards against shared component modification */ + HDmemcpy(&old_fill_prop, fill_prop, sizeof(old_fill_prop)); + + if (H5O_msg_reset_share(H5O_FILL_ID, &old_fill_prop) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, 0, "can't reset the copied fill property") + + get_value = H5O_msg_size_oh(file, ohdr, H5O_FILL_ID, &old_fill_prop, 0); + if (get_value == 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, 0, "can't get size of fill value (backwards compat) message") + ret_value += get_value; + } + + /* Filter/Pipeline message size */ + if(H5D_CHUNKED == dset->shared->layout.type) { + H5O_pline_t *pline = &dset->shared->dcpl_cache.pline; + if(pline->nused > 0) { + get_value = H5O_msg_size_oh(file, ohdr, H5O_PLINE_ID, pline, 0); + if (get_value == 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, 0, "can't get size of filter message") + ret_value += get_value; + } + } + + /* External File Link message size */ + if(dset->shared->dcpl_cache.efl.nused > 0) { + get_value = H5O_msg_size_oh(file, ohdr, H5O_EFL_ID, &dset->shared->dcpl_cache.efl, 0); + if (get_value == 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, 0, "can't get size of external file link message") + ret_value += get_value; + } + + /* Modification Time message size */ + if(H5O_HDR_STORE_TIMES & H5O_OH_GET_FLAGS(ohdr)) { + HDassert(H5O_OH_GET_VERSION(ohdr) >= 1); /* 1 :: H5O_VERSION_1 (H5Opkg.h) */ + + if(H5O_OH_GET_VERSION(ohdr) == 1) { + /* v1 object headers store modification time as a message */ + time_t mtime; + get_value = H5O_msg_size_oh(file, ohdr, H5O_MTIME_NEW_ID, &mtime, 0); + if (get_value == 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, 0, "can't get size of modification time message") + ret_value += get_value; + } + } + +done: + FUNC_LEAVE_NOAPI(ret_value); +} /* H5D__calculate_minimum_header_size */ + + +/*------------------------------------------------------------------------- + * Function: H5D__prepare_minimized_oh + * + * Purpose: Create an object header (H5O_t) allocated with the smallest + * possible size. + * + * Return: Success: SUCCEED (0) (non-negative value) + * Failure: FAIL (-1) (negative value) + * + * Programmer: Jacob Smith + * 16 August 2018 + *------------------------------------------------------------------------- + */ +static herr_t +H5D__prepare_minimized_oh(H5F_t *file, H5D_t *dset, H5O_loc_t *oloc) +{ + H5O_t *oh = NULL; + size_t ohdr_size = 0; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + HDassert(file); + HDassert(dset); + HDassert(oloc); + + oh = H5O__create_ohdr(file, dset->shared->dcpl_id); + if(NULL == oh) + HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, FAIL, "can't instantiate object header") + + ohdr_size = H5D__calculate_minimum_header_size(file, dset, oh); + if (ohdr_size == 0) + HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, FAIL, "computed header size is invalid") + + /* Special allocation of space for compact datsets is handled by the call here. */ + if(H5O__apply_ohdr(file, oh, dset->shared->dcpl_id, ohdr_size, (size_t)1, oloc) == FAIL) + HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, FAIL, "can't apply object header to file") + +done: + FUNC_LEAVE_NOAPI(ret_value); +} /* H5D__prepare_minimized_oh */ + + +/*------------------------------------------------------------------------- * Function: H5D__update_oh_info * * Purpose: Create and fill object header for dataset @@ -683,6 +850,7 @@ H5D__update_oh_info(H5F_t *file, H5D_t *dset, hid_t dapl_id) hbool_t fill_changed = FALSE; /* Flag indicating the fill value was changed */ hbool_t layout_init = FALSE; /* Flag to indicate that chunk information was initialized */ hbool_t use_at_least_v18; /* Flag indicating to use at least v18 format versions */ + hbool_t use_minimized_header = FALSE; /* Flag to use minimized dataset object headers */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -751,13 +919,24 @@ H5D__update_oh_info(H5F_t *file, H5D_t *dset, hid_t dapl_id) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set fill value info") } /* end if */ - /* Add the dataset's raw data size to the size of the header, if the raw data will be stored as compact */ - if(layout->type == H5D_COMPACT) - ohdr_size += layout->storage.u.compact.size; + if(H5D__use_minimized_dset_headers(file, dset, &use_minimized_header) == FAIL) + HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get minimize settings") + + if(TRUE == use_minimized_header) { + if(H5D__prepare_minimized_oh(file, dset, oloc) == FAIL) + HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create minimized dataset object header") + } else { + /* Add the dataset's raw data size to the size of the header, if the + * raw data will be stored as compact + */ + if(H5D_COMPACT == layout->type) + ohdr_size += layout->storage.u.compact.size; + + /* Create an object header for the dataset */ + if(H5O_create(file, ohdr_size, (size_t)1, dset->shared->dcpl_id, oloc/*out*/) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to create dataset object header") + } /* if using default/minimized object headers */ - /* Create an object header for the dataset */ - if(H5O_create(file, ohdr_size, (size_t)1, dset->shared->dcpl_id, oloc/*out*/) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to create dataset object header") HDassert(file == dset->oloc.file); /* Pin the object header */ @@ -1189,7 +1368,7 @@ H5D__open_name(const H5G_loc_t *loc, const char *name, hid_t dapl_id) hbool_t loc_found = FALSE; /* Location at 'name' found */ H5D_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check args */ HDassert(loc); @@ -1223,7 +1402,7 @@ done: if(loc_found && H5G_loc_free(&dset_loc) < 0) HDONE_ERROR(H5E_DATASET, H5E_CANTRELEASE, NULL, "can't free location") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__open_name() */ @@ -1617,7 +1796,7 @@ H5D__close_cb(H5D_t *dataset) { herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* check args */ HDassert(dataset && dataset->oloc.file && dataset->shared); @@ -1628,7 +1807,7 @@ H5D__close_cb(H5D_t *dataset) HGOTO_ERROR(H5E_DATASET, H5E_CANTCLOSEOBJ, FAIL, "can't close dataset"); done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__close_cb() */ @@ -2262,7 +2441,7 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__get_storage_size_real + * Function: H5D__get_storage_size * * Purpose: Determines how much space has been reserved to store the raw * data of a dataset. @@ -2270,8 +2449,8 @@ done: * Return: Non-negative on success, negative on failure *------------------------------------------------------------------------- */ -static herr_t -H5D__get_storage_size_real(const H5D_t *dset, hsize_t *storage_size) +herr_t +H5D__get_storage_size(const H5D_t *dset, hsize_t *storage_size) { herr_t ret_value = SUCCEED; /* Return value */ @@ -2313,35 +2492,6 @@ H5D__get_storage_size_real(const H5D_t *dset, hsize_t *storage_size) done: FUNC_LEAVE_NOAPI_TAG(ret_value) -} /* end H5D__get_storage_size_real() */ - - -/*------------------------------------------------------------------------- - * Function: H5D__get_storage_size - * - * Purpose: Determines how much space has been reserved to store the raw - * data of a dataset. - * - * Note: This routine is needed so that there's a non-API routine for - * creating attributes that can set up VOL / SWMR info - * (which need a DXPL). - * - * Return: Non-negative on success, negative on failure - *------------------------------------------------------------------------- - */ -herr_t -H5D__get_storage_size(const H5D_t *dset, hsize_t *storage_size) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Difficult to error check, since the error value is 0 and 0 is a valid value... :-/ */ - if(H5D__get_storage_size_real(dset, storage_size) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get size of dataset's storage") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) } /* end H5D__get_storage_size() */ @@ -2586,7 +2736,7 @@ H5D__set_extent(H5D_t *dset, const hsize_t *size) unsigned dim_idx; /* Dimension index */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL_TAG(dset->oloc.addr) + FUNC_ENTER_PACKAGE_TAG(dset->oloc.addr) /* Check args */ HDassert(dset); @@ -2747,7 +2897,7 @@ H5D__set_extent(H5D_t *dset, const hsize_t *size) } /* end if */ done: - FUNC_LEAVE_NOAPI_VOL_TAG(ret_value) + FUNC_LEAVE_NOAPI_TAG(ret_value) } /* end H5D__set_extent() */ @@ -2833,7 +2983,7 @@ H5D__flush(H5D_t *dset, hid_t dset_id) { herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check args */ HDassert(dset); @@ -2848,7 +2998,7 @@ H5D__flush(H5D_t *dset, hid_t dset_id) HGOTO_ERROR(H5E_DATASET, H5E_CANTFLUSH, FAIL, "unable to flush dataset and object flush callback") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__flush() */ @@ -2873,7 +3023,7 @@ H5D__format_convert(H5D_t *dataset) hbool_t add_new_layout = FALSE; /* Indicate that the new layout message is added */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL_TAG(dataset->oloc.addr) + FUNC_ENTER_PACKAGE_TAG(dataset->oloc.addr) /* Check args */ HDassert(dataset); @@ -2999,7 +3149,7 @@ done: if(newlayout != NULL) newlayout = (H5O_layout_t *)H5MM_xfree(newlayout); - FUNC_LEAVE_NOAPI_VOL_TAG(ret_value) + FUNC_LEAVE_NOAPI_TAG(ret_value) } /* end H5D__format_convert() */ @@ -3126,44 +3276,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__get_create_plist - * - * Purpose: Internal routine to retrieve a dataset's creation property list. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: ID for a copy of the dataset creation property - * list. The property list ID should be released - * by calling H5Pclose(). - * - * Failure: FAIL - * - * Programmer: Quincey Koziol - * December 18, 2017 - * - *------------------------------------------------------------------------- - */ -hid_t -H5D__get_create_plist(const H5D_t *dset) -{ - hid_t ret_value = FAIL; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check arguments */ - HDassert(dset); - - /* Retrieve the DCPL */ - if((ret_value = H5D_get_create_plist(dset)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataset's creation property list") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5D__get_create_plist() */ - - -/*------------------------------------------------------------------------- * Function: H5D_get_create_plist * * Purpose: Private function for H5Dget_create_plist @@ -3422,7 +3534,7 @@ H5D__get_space(const H5D_t *dset) H5S_t *space = NULL; hid_t ret_value = H5I_INVALID_HID; - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* If the layout is virtual, update the extent */ if(dset->shared->layout.type == H5D_VIRTUAL) @@ -3443,7 +3555,7 @@ done: if(H5S_close(space) < 0) HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release dataspace") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__get_space() */ @@ -3508,7 +3620,7 @@ H5D__refresh(hid_t dset_id, H5D_t *dset) hbool_t virt_dsets_held = FALSE; /* Whether virtual datasets' files are held open */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(dset); @@ -3536,6 +3648,6 @@ done: if(H5D__virtual_release_source_dset_files(head) < 0) HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, FAIL, "can't release VDS source files held open") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__refresh() */ diff --git a/src/H5Dio.c b/src/H5Dio.c index 5fea91f..8abcd81 100644 --- a/src/H5Dio.c +++ b/src/H5Dio.c @@ -449,7 +449,7 @@ H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, char fake_char; /* Temporary variable for NULL buffer pointers */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL_TAG(dataset->oloc.addr) + FUNC_ENTER_PACKAGE_TAG(dataset->oloc.addr) /* check args */ HDassert(dataset && dataset->oloc.file); @@ -616,7 +616,7 @@ done: if(H5S_close(projected_mem_space) < 0) HDONE_ERROR(H5E_DATASET, H5E_CANTCLOSEOBJ, FAIL, "unable to shut down projected memory dataspace") - FUNC_LEAVE_NOAPI_VOL_TAG(ret_value) + FUNC_LEAVE_NOAPI_TAG(ret_value) } /* end H5D__read() */ @@ -685,22 +685,12 @@ H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, /* Various MPI based checks */ #ifdef H5_HAVE_PARALLEL - if H5F_HAS_FEATURE(dataset->oloc.file, H5FD_FEAT_HAS_MPI) { - /* If MPI based VFD is used, no VL datatype support yet. */ - /* This is because they use the global heap in the file and we don't */ - /* support parallel access of that yet */ - if(H5T_detect_class(type_info.mem_type, H5T_VLEN, FALSE) > 0) - HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "Parallel IO does not support writing VL datatypes yet") - - /* If MPI based VFD is used, no VL datatype support yet. */ + if(H5F_HAS_FEATURE(dataset->oloc.file, H5FD_FEAT_HAS_MPI)) { + /* If MPI based VFD is used, no VL or region reference datatype support yet. */ /* This is because they use the global heap in the file and we don't */ /* support parallel access of that yet */ - /* We should really use H5T_detect_class() here, but it will be difficult - * to detect the type of the reference if it is nested... -QAK - */ - if(H5T_get_class(type_info.mem_type, TRUE) == H5T_REFERENCE && - H5T_get_ref_type(type_info.mem_type) == H5R_DATASET_REGION) - HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "Parallel IO does not support writing region reference datatypes yet") + if(H5T_is_vl_storage(type_info.mem_type) > 0) + HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "Parallel IO does not support writing VL or region reference datatypes yet") } /* end if */ else { H5FD_mpio_xfer_t io_xfer_mode; /* MPI I/O transfer mode */ @@ -1070,16 +1060,13 @@ H5D__typeinfo_init(const H5D_t *dset, hid_t mem_type_id, hbool_t do_write, if(type_info->request_nelmts == 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "temporary buffer max size is too small") - /* - * Get a temporary buffer for type conversion unless the app has already + /* Get a temporary buffer for type conversion unless the app has already * supplied one through the xfer properties. Instead of allocating a - * buffer which is the exact size, we allocate the target size. The - * malloc() is usually less resource-intensive if we allocate/free the - * same size over and over. + * buffer which is the exact size, we allocate the target size. */ if(NULL == (type_info->tconv_buf = (uint8_t *)tconv_buf)) { /* Allocate temporary buffer */ - if(NULL == (type_info->tconv_buf = H5FL_BLK_MALLOC(type_conv, target_size))) + if(NULL == (type_info->tconv_buf = H5FL_BLK_CALLOC(type_conv, target_size))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for type conversion") type_info->tconv_buf_allocated = TRUE; } /* end if */ @@ -1182,15 +1169,19 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset, hbool_t local_error_message_previously_written = FALSE; hbool_t global_error_message_previously_written = FALSE; size_t index; - char local_no_collective_cause_string[256] = ""; - char global_no_collective_cause_string[256] = ""; + size_t cause_strings_len; + char local_no_collective_cause_string[512] = ""; + char global_no_collective_cause_string[512] = ""; const char *cause_strings[] = { "independent I/O was requested", "datatype conversions were required", "data transforms needed to be applied", "optimized MPI types flag wasn't set", "one of the dataspaces was neither simple nor scalar", "dataset was not contiguous or chunked", - "parallel writes to filtered datasets are disabled" }; + "parallel writes to filtered datasets are disabled", + "an error occurred while checking if collective I/O was possible" }; + + cause_strings_len = sizeof(cause_strings) / sizeof(cause_strings[0]); if(H5CX_get_mpio_local_no_coll_cause(&local_no_collective_cause) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get local no collective cause value") @@ -1199,7 +1190,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset, /* Append each of the "reason for breaking collective I/O" error messages to the * local and global no collective cause strings */ - for (cause = 1, index = 0; cause < H5D_MPIO_NO_COLLECTIVE_MAX_CAUSE; cause <<= 1, index++) { + for (cause = 1, index = 0; (cause < H5D_MPIO_NO_COLLECTIVE_MAX_CAUSE) && (index < cause_strings_len); cause <<= 1, index++) { size_t cause_strlen = HDstrlen(cause_strings[index]); if (cause & local_no_collective_cause) { diff --git a/src/H5Dmpio.c b/src/H5Dmpio.c index a669593..6803b60 100644 --- a/src/H5Dmpio.c +++ b/src/H5Dmpio.c @@ -37,7 +37,6 @@ #include "H5Eprivate.h" /* Error handling */ #include "H5Fprivate.h" /* File access */ #include "H5FDprivate.h" /* File drivers */ -#include "H5FDmpi.h" /* MPI-based file drivers */ #include "H5Iprivate.h" /* IDs */ #include "H5MMprivate.h" /* Memory management */ #include "H5Oprivate.h" /* Object headers */ @@ -83,16 +82,25 @@ /* Macros to represent the regularity of the selection for multiple chunk IO case. */ #define H5D_CHUNK_SELECT_REG 1 - /******************/ /* Local Typedefs */ /******************/ /* Combine chunk address and chunk info into a struct for better performance. */ typedef struct H5D_chunk_addr_info_t { - haddr_t chunk_addr; - H5D_chunk_info_t chunk_info; + haddr_t chunk_addr; + H5D_chunk_info_t chunk_info; } H5D_chunk_addr_info_t; +/* Rank 0 Bcast values */ +typedef enum H5D_mpio_no_rank0_bcast_cause_t { + H5D_MPIO_RANK0_BCAST = 0x00, + H5D_MPIO_RANK0_NOT_H5S_ALL = 0x01, + H5D_MPIO_RANK0_NOT_CONTIGUOUS = 0x02, + H5D_MPIO_RANK0_NOT_FIXED_SIZE = 0x04, + H5D_MPIO_RANK0_GREATER_THAN_2GB = 0x08 +} H5D_mpio_no_rank0_bcast_cause_t; + + /* * Information about a single chunk when performing collective filtered I/O. All * of the fields of one of these structs are initialized at the start of collective @@ -281,8 +289,10 @@ H5D__mpio_opt_possible(const H5D_io_info_t *io_info, const H5S_t *file_space, const H5S_t *mem_space, const H5D_type_info_t *type_info) { H5FD_mpio_xfer_t io_xfer_mode; /* MPI I/O transfer mode */ - unsigned local_cause = 0; /* Local reason(s) for breaking collective mode */ - unsigned global_cause = 0; /* Global reason(s) for breaking collective mode */ + unsigned local_cause[2] = {0,0}; /* [0] Local reason(s) for breaking collective mode */ + /* [1] Flag if dataset is both: H5S_ALL and small */ + unsigned global_cause[2] = {0,0}; /* Global reason(s) for breaking collective mode */ + htri_t is_vl_storage; /* Whether the dataset's datatype is stored in a variable-length form */ htri_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -296,36 +306,37 @@ H5D__mpio_opt_possible(const H5D_io_info_t *io_info, const H5S_t *file_space, /* For independent I/O, get out quickly and don't try to form consensus */ if(H5CX_get_io_xfer_mode(&io_xfer_mode) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get MPI-I/O transfer mode") + /* Set error flag, but keep going */ + local_cause[0] |= H5D_MPIO_ERROR_WHILE_CHECKING_COLLECTIVE_POSSIBLE; if(io_xfer_mode == H5FD_MPIO_INDEPENDENT) - local_cause |= H5D_MPIO_SET_INDEPENDENT; + local_cause[0] |= H5D_MPIO_SET_INDEPENDENT; /* Optimized MPI types flag must be set */ /* (based on 'HDF5_MPI_OPT_TYPES' environment variable) */ if(!H5FD_mpi_opt_types_g) - local_cause |= H5D_MPIO_MPI_OPT_TYPES_ENV_VAR_DISABLED; + local_cause[0] |= H5D_MPIO_MPI_OPT_TYPES_ENV_VAR_DISABLED; /* Don't allow collective operations if datatype conversions need to happen */ if(!type_info->is_conv_noop) - local_cause |= H5D_MPIO_DATATYPE_CONVERSION; + local_cause[0] |= H5D_MPIO_DATATYPE_CONVERSION; /* Don't allow collective operations if data transform operations should occur */ if(!type_info->is_xform_noop) - local_cause |= H5D_MPIO_DATA_TRANSFORMS; + local_cause[0] |= H5D_MPIO_DATA_TRANSFORMS; /* Check whether these are both simple or scalar dataspaces */ if(!((H5S_SIMPLE == H5S_GET_EXTENT_TYPE(mem_space) || H5S_SCALAR == H5S_GET_EXTENT_TYPE(mem_space)) && (H5S_SIMPLE == H5S_GET_EXTENT_TYPE(file_space) || H5S_SCALAR == H5S_GET_EXTENT_TYPE(file_space)))) - local_cause |= H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES; + local_cause[0] |= H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES; /* Dataset storage must be contiguous or chunked */ if(!(io_info->dset->shared->layout.type == H5D_CONTIGUOUS || io_info->dset->shared->layout.type == H5D_CHUNKED)) - local_cause |= H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET; + local_cause[0] |= H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET; /* check if external-file storage is used */ if(io_info->dset->shared->dcpl_cache.efl.nused > 0) - local_cause |= H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET; + local_cause[0] |= H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET; /* The handling of memory space is different for chunking and contiguous * storage. For contiguous storage, mem_space and file_space won't change @@ -340,31 +351,84 @@ H5D__mpio_opt_possible(const H5D_io_info_t *io_info, const H5S_t *file_space, * is less than 3. The functions needed (MPI_Mprobe and MPI_Imrecv) will * not be available. */ - if (io_info->op_type == H5D_IO_OP_WRITE && - io_info->dset->shared->layout.type == H5D_CHUNKED && - io_info->dset->shared->dcpl_cache.pline.nused > 0) - local_cause |= H5D_MPIO_PARALLEL_FILTERED_WRITES_DISABLED; + if(io_info->op_type == H5D_IO_OP_WRITE && + io_info->dset->shared->layout.type == H5D_CHUNKED && + io_info->dset->shared->dcpl_cache.pline.nused > 0) + local_cause[0] |= H5D_MPIO_PARALLEL_FILTERED_WRITES_DISABLED; #endif + /* Check if we are able to do a MPI_Bcast of the data from one rank + * instead of having all the processes involved in the collective I/O call. + */ + + /* Check to see if the process is reading the entire dataset */ + if(H5S_GET_SELECT_TYPE(file_space) != H5S_SEL_ALL) + local_cause[1] |= H5D_MPIO_RANK0_NOT_H5S_ALL; + /* Only perform this optimization for contigous datasets, currently */ + else if(H5D_CONTIGUOUS != io_info->dset->shared->layout.type) + /* Flag to do a MPI_Bcast of the data from one proc instead of + * having all the processes involved in the collective I/O. + */ + local_cause[1] |= H5D_MPIO_RANK0_NOT_CONTIGUOUS; + else if((is_vl_storage = H5T_is_vl_storage(type_info->dset_type)) < 0) + local_cause[0] |= H5D_MPIO_ERROR_WHILE_CHECKING_COLLECTIVE_POSSIBLE; + else if(is_vl_storage) + local_cause[1] |= H5D_MPIO_RANK0_NOT_FIXED_SIZE; + else { + size_t type_size; /* Size of dataset's datatype */ + + /* Retrieve the size of the dataset's datatype */ + if(0 == (type_size = H5T_GET_SIZE(type_info->dset_type))) + local_cause[0] |= H5D_MPIO_ERROR_WHILE_CHECKING_COLLECTIVE_POSSIBLE; + else { + hssize_t snelmts; /* [Signed] # of elements in dataset's dataspace */ + + /* Retrieve the size of the dataset's datatype */ + if((snelmts = H5S_GET_EXTENT_NPOINTS(file_space)) < 0) + local_cause[0] |= H5D_MPIO_ERROR_WHILE_CHECKING_COLLECTIVE_POSSIBLE; + else { + hsize_t dset_size; + + /* Determine dataset size */ + dset_size = ((hsize_t)snelmts) * type_size; + + /* If the size of the dataset is less than 2GB then do an MPI_Bcast + * of the data from one process instead of having all the processes + * involved in the collective I/O. + */ + if(dset_size > ((hsize_t)(2.0F * H5_GB) - 1)) + local_cause[1] |= H5D_MPIO_RANK0_GREATER_THAN_2GB; + } /* end else */ + } /* end else */ + } /* end else */ + /* Check for independent I/O */ - if(local_cause & H5D_MPIO_SET_INDEPENDENT) - global_cause = local_cause; + if(local_cause[0] & H5D_MPIO_SET_INDEPENDENT) + global_cause[0] = local_cause[0]; else { int mpi_code; /* MPI error code */ /* Form consensus opinion among all processes about whether to perform * collective I/O */ - if(MPI_SUCCESS != (mpi_code = MPI_Allreduce(&local_cause, &global_cause, 1, MPI_UNSIGNED, MPI_BOR, io_info->comm))) + if(MPI_SUCCESS != (mpi_code = MPI_Allreduce(&local_cause, &global_cause, 2, MPI_UNSIGNED, MPI_BOR, io_info->comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Allreduce failed", mpi_code) } /* end else */ /* Set the local & global values of no-collective-cause in the API context */ - H5CX_set_mpio_local_no_coll_cause(local_cause); - H5CX_set_mpio_global_no_coll_cause(global_cause); + H5CX_set_mpio_local_no_coll_cause(local_cause[0]); + H5CX_set_mpio_global_no_coll_cause(global_cause[0]); + + /* Set read-with-rank0-and-bcast flag if possible */ + if(global_cause[0] == 0 && global_cause[1] == 0) { + H5CX_set_mpio_rank0_bcast(TRUE); +#ifdef H5_HAVE_INSTRUMENTED_LIBRARY + H5CX_test_set_mpio_coll_rank0_bcast(TRUE); +#endif /* H5_HAVE_INSTRUMENTED_LIBRARY */ + } /* end if */ /* Set the return value, based on the global cause */ - ret_value = global_cause > 0 ? FALSE : TRUE; + ret_value = global_cause[0] > 0 ? FALSE : TRUE; done: FUNC_LEAVE_NOAPI(ret_value) @@ -736,6 +800,10 @@ H5D__chunk_collective_io(H5D_io_info_t *io_info, const H5D_type_info_t *type_inf HDassert(type_info); HDassert(fm); + /* Disable collective metadata reads for chunked dataset I/O operations + * in order to prevent potential hangs */ + H5CX_set_coll_metadata_read(FALSE); + /* Check the optional property list for the collective chunk IO optimization option */ if(H5CX_get_mpio_chunk_opt_mode(&chunk_opt_mode) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "couldn't get chunk optimization option") @@ -2249,7 +2317,7 @@ if(H5DEBUG(D)) /* Broadcasting the MPI_IO option info. and chunk address info. */ if(MPI_SUCCESS != (mpi_code = MPI_Bcast(total_chunk_addr_array, (int)(sizeof(haddr_t) * fm->layout->u.chunk.nchunks), MPI_BYTE, (int)0, io_info->comm))) - HMPI_GOTO_ERROR(FAIL, "MPI_BCast failed", mpi_code) + HMPI_GOTO_ERROR(FAIL, "MPI_BCast failed", mpi_code) } /* end if */ /* Start at first node in chunk skip list */ @@ -2901,6 +2969,8 @@ done: H5MM_free(num_assigned_chunks_array); if (shared_chunks_info_array) H5MM_free(shared_chunks_info_array); + if (H5Pclose(fapl_id) < 0) + HDONE_ERROR(H5E_DATASET, H5E_CANTCLOSEOBJ, FAIL, "couldn't close FAPL") FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__chunk_redistribute_shared_chunks() */ @@ -3074,8 +3144,8 @@ H5D__filtered_collective_chunk_entry_io(H5D_filtered_collective_io_info_t *chunk chunk_entry->chunk_states.new_chunk.length = chunk_entry->chunk_states.chunk_current.length; /* Currently, these chunk reads are done independently and will likely - * cause issues with collective metadata reads enabled. In the future, - * this should be refactored to use collective chunk reads - JTH */ + * cause issues with collective metadata reads enabled. In the future, + * this should be refactored to use collective chunk reads - JTH */ /* Get the original state of parallel I/O transfer mode */ if(H5CX_get_io_xfer_mode(&xfer_mode) < 0) diff --git a/src/H5Dnone.c b/src/H5Dnone.c index be421b6..09e781e 100644 --- a/src/H5Dnone.c +++ b/src/H5Dnone.c @@ -242,7 +242,7 @@ H5D__none_idx_iterate(const H5D_chk_idx_info_t *idx_info, unsigned u; /* Local index variable */ int curr_dim; /* Current rank */ hsize_t idx; /* Array index of chunk */ - int ret_value = -1; /* Return value */ + int ret_value = H5_ITER_CONT; /* Return value */ FUNC_ENTER_STATIC_NOERR @@ -266,7 +266,7 @@ H5D__none_idx_iterate(const H5D_chk_idx_info_t *idx_info, HDassert(ndims > 0); /* Iterate over all the chunks in the dataset's dataspace */ - for(u = 0; u < idx_info->layout->nchunks; u++) { + for(u = 0; u < idx_info->layout->nchunks && ret_value == H5_ITER_CONT; u++) { /* Calculate the index of this chunk */ idx = H5VM_array_offset_pre(ndims, idx_info->layout->max_down_chunks, chunk_rec.scaled); diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h index b887b87..da74d11 100644 --- a/src/H5Dpkg.h +++ b/src/H5Dpkg.h @@ -555,8 +555,6 @@ H5_DLL H5D_t *H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space, H5_DLL H5D_t *H5D__create_named(const H5G_loc_t *loc, const char *name, hid_t type_id, const H5S_t *space, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id); -H5_DLL H5D_t *H5D__create_anon(H5F_t *file, hid_t type_id, const H5S_t *space, - hid_t dcpl_id, hid_t dapl_id); H5_DLL H5D_t *H5D__open_name(const H5G_loc_t *loc, const char *name, hid_t dapl_id); H5_DLL hid_t H5D__get_space(const H5D_t *dset); H5_DLL hid_t H5D__get_type(const H5D_t *dset); @@ -566,6 +564,9 @@ H5_DLL herr_t H5D__alloc_storage(const H5D_io_info_t *io_info, H5D_time_alloc_t H5_DLL herr_t H5D__get_storage_size(const H5D_t *dset, hsize_t *storage_size); H5_DLL herr_t H5D__get_chunk_storage_size(H5D_t *dset, const hsize_t *offset, hsize_t *storage_size); +H5_DLL herr_t H5D__get_num_chunks(const H5D_t *dset, const H5S_t *space, hsize_t *nchunks); +H5_DLL herr_t H5D__get_chunk_info(const H5D_t *dset, const H5S_t *space, hsize_t chk_idx, hsize_t *coord, unsigned *filter_mask, haddr_t *offset, hsize_t *size); +H5_DLL herr_t H5D__get_chunk_info_by_coord(const H5D_t *dset, const hsize_t *coord, unsigned *filter_mask, haddr_t *addr, hsize_t *size); H5_DLL haddr_t H5D__get_offset(const H5D_t *dset); H5_DLL void *H5D__vlen_get_buf_size_alloc(size_t size, void *info); H5_DLL herr_t H5D__vlen_get_buf_size(void *elem, hid_t type_id, unsigned ndim, @@ -575,7 +576,6 @@ H5_DLL herr_t H5D__set_extent(H5D_t *dataset, const hsize_t *size); H5_DLL herr_t H5D__flush_sieve_buf(H5D_t *dataset); H5_DLL herr_t H5D__flush_real(H5D_t *dataset); H5_DLL herr_t H5D__flush(H5D_t *dset, hid_t dset_id); -H5_DLL hid_t H5D__get_create_plist(const H5D_t *dset); H5_DLL herr_t H5D__mark(const H5D_t *dataset, unsigned flags); H5_DLL herr_t H5D__refresh(hid_t dset_id, H5D_t *dataset); diff --git a/src/H5Dprivate.h b/src/H5Dprivate.h index cbee0de..00e1e28 100644 --- a/src/H5Dprivate.h +++ b/src/H5Dprivate.h @@ -45,6 +45,7 @@ #define H5D_CRT_FILL_VALUE_NAME "fill_value" /* Fill value */ #define H5D_CRT_ALLOC_TIME_STATE_NAME "alloc_time_state" /* Space allocation time state */ #define H5D_CRT_EXT_FILE_LIST_NAME "efl" /* External file list */ +#define H5D_CRT_MIN_DSET_HDR_SIZE_NAME "dset_oh_minimize" /* Minimize dataset object header */ /* ======== Dataset access property names ======== */ #define H5D_ACS_DATA_CACHE_NUM_SLOTS_NAME "rdcc_nslots" /* Size of raw data chunk cache(slots) */ @@ -94,7 +95,13 @@ /* Definitions for all collective chunk instrumentation properties */ #define H5D_XFER_COLL_CHUNK_SIZE sizeof(unsigned) #define H5D_XFER_COLL_CHUNK_DEF 1 -#define H5D_XFER_COLL_CHUNK_FIX 0 + +/* General collective I/O instrumentation properties */ +#define H5D_XFER_COLL_RANK0_BCAST_NAME "coll_rank0_bcast" + +/* Definitions for general collective I/O instrumentation properties */ +#define H5D_XFER_COLL_RANK0_BCAST_SIZE sizeof(hbool_t) +#define H5D_XFER_COLL_RANK0_BCAST_DEF FALSE #endif /* H5_HAVE_INSTRUMENTED_LIBRARY */ /* Default temporary buffer size */ diff --git a/src/H5Dpublic.h b/src/H5Dpublic.h index a1ccda0..2dcbeae 100644 --- a/src/H5Dpublic.h +++ b/src/H5Dpublic.h @@ -141,6 +141,9 @@ H5_DLL hid_t H5Dget_create_plist(hid_t dset_id); H5_DLL hid_t H5Dget_access_plist(hid_t dset_id); H5_DLL hsize_t H5Dget_storage_size(hid_t dset_id); H5_DLL herr_t H5Dget_chunk_storage_size(hid_t dset_id, const hsize_t *offset, hsize_t *chunk_bytes); +H5_DLL herr_t H5Dget_num_chunks(hid_t dset_id, hid_t fspace_id, hsize_t *nchunks); +H5_DLL herr_t H5Dget_chunk_info_by_coord(hid_t dset_id, const hsize_t *coord, unsigned *filter_mask, haddr_t *addr, hsize_t *size); +H5_DLL herr_t H5Dget_chunk_info(hid_t dset_id, hid_t fspace_id, hsize_t chk_idx, hsize_t *coord, unsigned *filter_mask, haddr_t *addr, hsize_t *size); H5_DLL haddr_t H5Dget_offset(hid_t dset_id); H5_DLL herr_t H5Dread(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, void *buf/*out*/); @@ -1481,7 +1481,7 @@ done: * * Purpose: Prints the error stack in some default way. This is just a * convenience function for H5Ewalk() with a function that - * prints error messages. Users are encouraged to write there + * prints error messages. Users are encouraged to write their * own more specific error handlers. * * Return: Non-negative on success/Negative on failure @@ -1563,8 +1563,8 @@ H5Ewalk2(hid_t err_stack, H5E_direction_t direction, H5E_walk2_t stack_func, voi /* Walk the error stack */ op.vers = 2; op.u.func2 = stack_func; - if(H5E_walk(estack, direction, &op, client_data) < 0) - HGOTO_ERROR(H5E_ERROR, H5E_CANTLIST, FAIL, "can't walk error stack") + if((ret_value = H5E_walk(estack, direction, &op, client_data)) < 0) + HERROR(H5E_ERROR, H5E_CANTLIST, "can't walk error stack"); done: FUNC_LEAVE_API(ret_value) @@ -986,23 +986,27 @@ END_FUNC(PRIV) /* end H5EA_delete() */ * Purpose: Iterate over the elements of an extensible array * (copied and modified from FA_iterate() in H5FA.c) * - * Return: SUCCEED/FAIL + * Return: H5_ITER_CONT/H5_ITER_ERROR * * Programmer: Vailin Choi; Feb 2015 * + * Modification: + * Prototype changed (HDFFV-10661) + * - herr_t to int + * - SUCCEED/FAIL to H5_ITER_CONT/H5_ITER_ERROR + * December 24, 2018 -BMR *------------------------------------------------------------------------- */ BEGIN_FUNC(PRIV, ERR, -herr_t, SUCCEED, FAIL, +int, H5_ITER_CONT, H5_ITER_ERROR, H5EA_iterate(H5EA_t *ea, H5EA_operator_t op, void *udata)) /* Local variables */ uint8_t *elmt = NULL; hsize_t u; + int cb_ret = H5_ITER_CONT; /* Return value from callback */ - /* - * Check arguments. - */ + /* Check arguments */ HDassert(ea); HDassert(op); HDassert(udata); @@ -1012,9 +1016,7 @@ H5EA_iterate(H5EA_t *ea, H5EA_operator_t op, void *udata)) H5E_THROW(H5E_CANTALLOC, "memory allocation failed for extensible array element") /* Iterate over all elements in array */ - for(u = 0; u < ea->hdr->stats.stored.max_idx_set; u++) { - int cb_ret; /* Return value from callback */ - + for(u = 0; u < ea->hdr->stats.stored.max_idx_set && cb_ret == H5_ITER_CONT; u++) { /* Get array element */ if(H5EA_get(ea, u, elmt) < 0) H5E_THROW(H5E_CANTGET, "unable to delete fixed array") diff --git a/src/H5Edefin.h b/src/H5Edefin.h index a09db35..1e1730e 100644 --- a/src/H5Edefin.h +++ b/src/H5Edefin.h @@ -179,7 +179,8 @@ hid_t H5E_CANTRESIZE_g = FAIL; /* Unable to resize a metadata cache ent hid_t H5E_CANTDEPEND_g = FAIL; /* Unable to create a flush dependency */ hid_t H5E_CANTUNDEPEND_g = FAIL; /* Unable to destroy a flush dependency */ hid_t H5E_CANTNOTIFY_g = FAIL; /* Unable to notify object about action */ -hid_t H5E_LOGFAIL_g = FAIL; /* Failure in the cache logging framework */ +hid_t H5E_LOGGING_g = FAIL; /* Failure in the cache logging framework */ +hid_t H5E_LOGFAIL_g = FAIL; /* old H5E_LOGGING_g (maintained for binary compatibility) */ hid_t H5E_CANTCORK_g = FAIL; /* Unable to cork an object */ hid_t H5E_CANTUNCORK_g = FAIL; /* Unable to uncork an object */ diff --git a/src/H5Einit.h b/src/H5Einit.h index ead5f67..713b2fb 100644 --- a/src/H5Einit.h +++ b/src/H5Einit.h @@ -697,9 +697,14 @@ if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to notify object about action") HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed") if((H5E_CANTNOTIFY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0) HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message") -assert(H5E_LOGFAIL_g==(-1)); +assert(H5E_LOGGING_g==(-1)); if((msg = H5E_create_msg(cls, H5E_MINOR, "Failure in the cache logging framework"))==NULL) HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed") +if((H5E_LOGGING_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0) + HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message") +assert(H5E_LOGFAIL_g==(-1)); +if((msg = H5E_create_msg(cls, H5E_MINOR, "old H5E_LOGGING_g (maintained for binary compatibility)"))==NULL) + HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed") if((H5E_LOGFAIL_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0) HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message") assert(H5E_CANTCORK_g==(-1)); diff --git a/src/H5Eint.c b/src/H5Eint.c index 15953af..ff2a860 100644 --- a/src/H5Eint.c +++ b/src/H5Eint.c @@ -419,13 +419,13 @@ done: /*------------------------------------------------------------------------- * Function: H5E_print * - * Purpose: Private function to print the error stack in some default + * Purpose: Private function to print the error stack in some default * way. This is just a convenience function for H5Ewalk() and * H5Ewalk2() with a function that prints error messages. - * Users are encouraged to write there own more specific error + * Users are encouraged to write their own more specific error * handlers. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Friday, February 27, 1998 @@ -510,9 +510,8 @@ herr_t H5E_walk(const H5E_t *estack, H5E_direction_t direction, const H5E_walk_op_t *op, void *client_data) { - int i; /* Local index variable */ - herr_t status; /* Status from callback function */ - herr_t ret_value = SUCCEED; /* Return value */ + int i; /* Local index variable */ + herr_t ret_value = H5_ITER_CONT; /* Return value */ FUNC_ENTER_NOAPI_NOINIT @@ -530,9 +529,8 @@ H5E_walk(const H5E_t *estack, H5E_direction_t direction, const H5E_walk_op_t *op if(op->u.func1) { H5E_error1_t old_err; - status = SUCCEED; if(H5E_WALK_UPWARD == direction) { - for(i = 0; i < (int)estack->nused && status >= 0; i++) { + for(i = 0; i < (int)estack->nused && ret_value == H5_ITER_CONT; i++) { /* Point to each error record on the stack and pass it to callback function.*/ old_err.maj_num = estack->slot[i].maj_num; old_err.min_num = estack->slot[i].min_num; @@ -541,12 +539,12 @@ H5E_walk(const H5E_t *estack, H5E_direction_t direction, const H5E_walk_op_t *op old_err.desc = estack->slot[i].desc; old_err.line = estack->slot[i].line; - status = (op->u.func1)(i, &old_err, client_data); + ret_value = (op->u.func1)(i, &old_err, client_data); } /* end for */ } /* end if */ else { H5_CHECK_OVERFLOW(estack->nused - 1, size_t, int); - for(i = (int)(estack->nused - 1); i >= 0 && status >= 0; i--) { + for(i = (int)(estack->nused - 1); i >= 0 && ret_value == H5_ITER_CONT; i--) { /* Point to each error record on the stack and pass it to callback function.*/ old_err.maj_num = estack->slot[i].maj_num; old_err.min_num = estack->slot[i].min_num; @@ -555,12 +553,12 @@ H5E_walk(const H5E_t *estack, H5E_direction_t direction, const H5E_walk_op_t *op old_err.desc = estack->slot[i].desc; old_err.line = estack->slot[i].line; - status = (op->u.func1)((int)(estack->nused - (size_t)(i + 1)), &old_err, client_data); + ret_value = (op->u.func1)((int)(estack->nused - (size_t)(i + 1)), &old_err, client_data); } /* end for */ } /* end else */ - if(status < 0) - HGOTO_ERROR(H5E_ERROR, H5E_CANTLIST, FAIL, "can't walk error stack") + if(ret_value < 0) + HERROR(H5E_ERROR, H5E_CANTLIST, "can't walk error stack"); } /* end if */ #else /* H5_NO_DEPRECATED_SYMBOLS */ HDassert(0 && "version 1 error stack walk without deprecated symbols!"); @@ -569,19 +567,18 @@ H5E_walk(const H5E_t *estack, H5E_direction_t direction, const H5E_walk_op_t *op else { HDassert(op->vers == 2); if(op->u.func2) { - status = SUCCEED; if(H5E_WALK_UPWARD == direction) { - for(i = 0; i < (int)estack->nused && status >= 0; i++) - status = (op->u.func2)((unsigned)i, estack->slot + i, client_data); + for(i = 0; i < (int)estack->nused && ret_value == H5_ITER_CONT; i++) + ret_value = (op->u.func2)((unsigned)i, estack->slot + i, client_data); } /* end if */ else { H5_CHECK_OVERFLOW(estack->nused - 1, size_t, int); - for(i = (int)(estack->nused - 1); i >= 0 && status >= 0; i--) - status = (op->u.func2)((unsigned)(estack->nused - (size_t)(i + 1)), estack->slot + i, client_data); + for(i = (int)(estack->nused - 1); i >= 0 && ret_value == H5_ITER_CONT; i--) + ret_value = (op->u.func2)((unsigned)(estack->nused - (size_t)(i + 1)), estack->slot + i, client_data); } /* end else */ - if(status < 0) - HGOTO_ERROR(H5E_ERROR, H5E_CANTLIST, FAIL, "can't walk error stack") + if(ret_value < 0) + HERROR(H5E_ERROR, H5E_CANTLIST, "can't walk error stack"); } /* end if */ } /* end else */ diff --git a/src/H5Epubgen.h b/src/H5Epubgen.h index 7a907c7..7d167b5 100644 --- a/src/H5Epubgen.h +++ b/src/H5Epubgen.h @@ -292,6 +292,7 @@ H5_DLLVAR hid_t H5E_NOIDS_g; /* Out of IDs for group */ #define H5E_CANTDEPEND (H5OPEN H5E_CANTDEPEND_g) #define H5E_CANTUNDEPEND (H5OPEN H5E_CANTUNDEPEND_g) #define H5E_CANTNOTIFY (H5OPEN H5E_CANTNOTIFY_g) +#define H5E_LOGGING (H5OPEN H5E_LOGGING_g) #define H5E_LOGFAIL (H5OPEN H5E_LOGFAIL_g) #define H5E_CANTCORK (H5OPEN H5E_CANTCORK_g) #define H5E_CANTUNCORK (H5OPEN H5E_CANTUNCORK_g) @@ -319,7 +320,8 @@ H5_DLLVAR hid_t H5E_CANTRESIZE_g; /* Unable to resize a metadata cache entry H5_DLLVAR hid_t H5E_CANTDEPEND_g; /* Unable to create a flush dependency */ H5_DLLVAR hid_t H5E_CANTUNDEPEND_g; /* Unable to destroy a flush dependency */ H5_DLLVAR hid_t H5E_CANTNOTIFY_g; /* Unable to notify object about action */ -H5_DLLVAR hid_t H5E_LOGFAIL_g; /* Failure in the cache logging framework */ +H5_DLLVAR hid_t H5E_LOGGING_g; /* Failure in the cache logging framework */ +H5_DLLVAR hid_t H5E_LOGFAIL_g; /* old H5E_LOGGING_g (maintained for binary compatibility) */ H5_DLLVAR hid_t H5E_CANTCORK_g; /* Unable to cork an object */ H5_DLLVAR hid_t H5E_CANTUNCORK_g; /* Unable to uncork an object */ diff --git a/src/H5Eterm.h b/src/H5Eterm.h index 6012657..0cdfccf 100644 --- a/src/H5Eterm.h +++ b/src/H5Eterm.h @@ -181,6 +181,7 @@ H5E_CANTRESIZE_g= H5E_CANTDEPEND_g= H5E_CANTUNDEPEND_g= H5E_CANTNOTIFY_g= +H5E_LOGGING_g= H5E_LOGFAIL_g= H5E_CANTCORK_g= H5E_CANTUNCORK_g= @@ -440,7 +440,7 @@ H5Fcreate(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id) flags |= H5F_ACC_RDWR | H5F_ACC_CREAT; /* Create a new file or truncate an existing file. */ - if (NULL == (new_file = H5F__create(filename, flags, fcpl_id, fapl_id))) + if(NULL == (new_file = H5F_open(filename, flags, fcpl_id, fapl_id))) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, H5I_INVALID_HID, "unable to create file") /* Get an atom for the file */ @@ -505,7 +505,7 @@ H5Fopen(const char *filename, unsigned flags, hid_t fapl_id) HGOTO_ERROR(H5E_FILE, H5E_CANTSET, H5I_INVALID_HID, "can't set access property list info") /* Open the file */ - if(NULL == (new_file = H5F__open(filename, flags, H5P_FILE_CREATE_DEFAULT, fapl_id))) + if(NULL == (new_file = H5F_open(filename, flags, H5P_FILE_CREATE_DEFAULT, fapl_id))) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, H5I_INVALID_HID, "unable to open file") /* Get an atom for the file */ @@ -621,15 +621,22 @@ H5Fflush(hid_t object_id, H5F_scope_t scope) * to be flushed. */ if(H5F_ACC_RDWR & H5F_INTENT(f)) { - hid_t fapl_id = H5P_DEFAULT; /* FAPL to use */ + hid_t fapl_id = H5P_DEFAULT; /* FAPL to use */ /* Verify access property list and set up collective metadata if appropriate */ if(H5CX_set_apl(&fapl_id, H5P_CLS_FACC, object_id, TRUE) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "can't set access property list info") - /* Flush the file */ - if(H5F__flush(f, scope) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush file's cached information") + /* Flush other files, depending on scope */ + if(H5F_SCOPE_GLOBAL == scope) { + /* Call the flush routine for mounted file hierarchies */ + if(H5F_flush_mounts(f) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush mounted file hierarchy") + } /* end if */ + else + /* Call the flush routine, for this file */ + if(H5F__flush(f) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush file's cached information") } /* end if */ done: @@ -796,9 +803,9 @@ H5Fget_freespace(hid_t file_id) if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE))) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file ID") - /* Get the free space in the file */ - if(H5F__get_freespace(file, &tot_space) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to check free space for file") + /* Go get the actual amount of free space in the file */ + if(H5MF_get_freespace(file, &tot_space, NULL) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to get free space for file") ret_value = (hssize_t)tot_space; @@ -1273,7 +1280,7 @@ H5Fget_free_sections(hid_t file_id, H5F_mem_t type, size_t nsects, HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "nsects must be > 0") /* Get the free-space section information in the file */ - if((ret_value = H5F__get_free_sections(file, type, nsects, sect_info)) < 0) + if((ret_value = H5MF_get_free_sections(file, type, nsects, sect_info)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to check free space for file") done: @@ -1375,7 +1382,7 @@ H5Fstart_mdc_logging(hid_t file_id) /* Call mdc logging function */ if(H5C_start_logging(file->shared->cache) < 0) - HGOTO_ERROR(H5E_FILE, H5E_LOGFAIL, FAIL, "unable to start mdc logging") + HGOTO_ERROR(H5E_FILE, H5E_LOGGING, FAIL, "unable to start mdc logging") done: FUNC_LEAVE_API(ret_value) @@ -1407,7 +1414,7 @@ H5Fstop_mdc_logging(hid_t file_id) /* Call mdc logging function */ if(H5C_stop_logging(file->shared->cache) < 0) - HGOTO_ERROR(H5E_FILE, H5E_LOGFAIL, FAIL, "unable to stop mdc logging") + HGOTO_ERROR(H5E_FILE, H5E_LOGGING, FAIL, "unable to stop mdc logging") done: FUNC_LEAVE_API(ret_value) @@ -1438,9 +1445,9 @@ H5Fget_mdc_logging_status(hid_t file_id, hbool_t *is_enabled, if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "hid_t identifier is not a file ID") - /* Call mdc logging function */ + /* Call MDC logging function */ if(H5C_get_logging_status(file->shared->cache, is_enabled, is_currently_logging) < 0) - HGOTO_ERROR(H5E_FILE, H5E_LOGFAIL, FAIL, "unable to get logging status") + HGOTO_ERROR(H5E_FILE, H5E_LOGGING, FAIL, "unable to get logging status") done: FUNC_LEAVE_API(ret_value) @@ -1713,3 +1720,87 @@ H5Fincrement_filesize(hid_t file_id, hsize_t increment) done: FUNC_LEAVE_API(ret_value) } /* H5Fincrement_filesize() */ + + +/*------------------------------------------------------------------------- + * Function: H5Fget_dset_no_attrs_hint + * + * Purpose: + * + * Get the file-level setting to create minimized dataset object headers. + * Result is stored at pointer `minimize`. + * + * Return: + * + * Success: SUCCEED (0) (non-negative value) + * Failure: FAIL (-1) (negative value) + * + * Programmer: + * + * Jacob Smith + * 15 August 2018 + * + * Changes: None. + *------------------------------------------------------------------------- + */ +herr_t +H5Fget_dset_no_attrs_hint(hid_t file_id, hbool_t *minimize) +{ + H5F_t *file = NULL; /* File object for file ID */ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_API(FAIL) + H5TRACE2("e", "i*b", file_id, minimize); + + if(NULL == minimize) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "out pointer 'minimize' cannot be NULL") + + file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE); + if(NULL == file) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid file identifier") + + *minimize = H5F_GET_MIN_DSET_OHDR(file); + +done: + FUNC_LEAVE_API(ret_value) +} /* H5Fget_dset_no_attrs_hint */ + + +/*------------------------------------------------------------------------- + * Function: H5Fset_dset_no_attrs_hint + * + * Purpose: + * + * Set the file-level setting to create minimized dataset object headers. + * + * Return: + * + * Success: SUCCEED (0) (non-negative value) + * Failure: FAIL (-1) (negative value) + * + * Programmer: + * + * Jacob Smith + * 15 August 2018 + * + * Changes: None. + *------------------------------------------------------------------------- + */ +herr_t +H5Fset_dset_no_attrs_hint(hid_t file_id, hbool_t minimize) +{ + H5F_t *file = NULL; /* File object for file ID */ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_API(FAIL) + H5TRACE2("e", "ib", file_id, minimize); + + file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE); + if(NULL == file) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid file identifier") + + H5F_SET_MIN_DSET_OHDR(file, minimize); + +done: + FUNC_LEAVE_API(ret_value) +} /* H5Fset_dset_no_attrs_hint */ @@ -685,20 +685,26 @@ END_FUNC(PRIV) /* end H5FA_delete() */ * Note: This is not very efficient, we should be iterating directly * over the fixed array's direct block [pages]. * - * Return: SUCCEED/FAIL + * Return: H5_ITER_CONT/H5_ITER_ERROR * * Programmer: Vailin Choi * Thursday, April 30, 2009 * + * Modification: + * Prototype changed (HDFFV-10661) + * - herr_t to int + * - SUCCEED/FAIL to H5_ITER_CONT/H5_ITER_ERROR + * December 24, 2018 -BMR *------------------------------------------------------------------------- */ BEGIN_FUNC(PRIV, ERR, -herr_t, SUCCEED, FAIL, +int, H5_ITER_CONT, H5_ITER_ERROR, H5FA_iterate(H5FA_t *fa, H5FA_operator_t op, void *udata)) /* Local variables */ uint8_t *elmt = NULL; hsize_t u; + int cb_ret = H5_ITER_CONT; /* Return value from callback */ /* * Check arguments. @@ -712,9 +718,7 @@ H5FA_iterate(H5FA_t *fa, H5FA_operator_t op, void *udata)) H5E_THROW(H5E_CANTALLOC, "memory allocation failed for fixed array element") /* Iterate over all elements in array */ - for(u = 0; u < fa->hdr->stats.nelmts; u++) { - int cb_ret; /* Return value from callback */ - + for(u = 0; u < fa->hdr->stats.nelmts && cb_ret == H5_ITER_CONT; u++) { /* Get array element */ if(H5FA_get(fa, u, elmt) < 0) H5E_THROW(H5E_CANTGET, "unable to delete fixed array") diff --git a/src/H5FDcore.c b/src/H5FDcore.c index 2ab04dc..395107e 100644 --- a/src/H5FDcore.c +++ b/src/H5FDcore.c @@ -343,14 +343,17 @@ H5FD__core_write_to_bstore(H5FD_core_t *file, haddr_t addr, size_t size) HDassert(file); - /* Write to backing store */ - if((off_t)addr != HDlseek(file->fd, (off_t)addr, SEEK_SET)) +#ifndef H5_HAVE_PREADWRITE + /* Seek to the correct location (if we don't have pwrite) */ + if((HDoff_t)addr != HDlseek(file->fd, (off_t)addr, SEEK_SET)) HGOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "error seeking in backing store") +#endif /* H5_HAVE_PREADWRITE */ while (size > 0) { h5_posix_io_t bytes_in = 0; /* # of bytes to write */ h5_posix_io_ret_t bytes_wrote = -1; /* # of bytes written */ + HDoff_t offset = (HDoff_t)addr; /* Trying to write more bytes than the return type can handle is * undefined behavior in POSIX. @@ -361,15 +364,21 @@ H5FD__core_write_to_bstore(H5FD_core_t *file, haddr_t addr, size_t size) bytes_in = (h5_posix_io_t)size; do { +#ifdef H5_HAVE_PREADWRITE + bytes_wrote = HDpwrite(file->fd, ptr, bytes_in, offset); + offset += bytes_wrote; +#else bytes_wrote = HDwrite(file->fd, ptr, bytes_in); +#endif /* H5_HAVE_PREADWRITE */ } while(-1 == bytes_wrote && EINTR == errno); if(-1 == bytes_wrote) { /* error */ int myerrno = errno; time_t mytime = HDtime(NULL); - HDoff_t myoffset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); - HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "write to backing store failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, error message = '%s', ptr = %p, total write size = %llu, bytes this sub-write = %llu, bytes actually written = %llu, offset = %llu", HDctime(&mytime), file->name, file->fd, myerrno, HDstrerror(myerrno), ptr, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_wrote, (unsigned long long)myoffset); + offset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); + + HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "write to backing store failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, error message = '%s', ptr = %p, total write size = %llu, bytes this sub-write = %llu, bytes actually written = %llu, offset = %llu", HDctime(&mytime), file->name, file->fd, myerrno, HDstrerror(myerrno), ptr, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_wrote, (unsigned long long)offset); } /* end if */ HDassert(bytes_wrote > 0); @@ -745,6 +754,7 @@ H5FD__core_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr while(size > 0) { h5_posix_io_t bytes_in = 0; /* # of bytes to read */ h5_posix_io_ret_t bytes_read = -1; /* # of bytes actually read */ + HDoff_t offset = (HDoff_t)0; /* Trying to read more bytes than the return type can handle is * undefined behavior in POSIX. @@ -755,15 +765,21 @@ H5FD__core_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr bytes_in = (h5_posix_io_t)size; do { +#ifdef H5_HAVE_PREADWRITE + bytes_read = HDpread(file->fd, mem, bytes_in, offset); + offset += bytes_read; +#else bytes_read = HDread(file->fd, mem, bytes_in); +#endif /* H5_HAVE_PREADWRITE */ } while(-1 == bytes_read && EINTR == errno); if(-1 == bytes_read) { /* error */ int myerrno = errno; time_t mytime = HDtime(NULL); - HDoff_t myoffset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); - HGOTO_ERROR(H5E_IO, H5E_READERROR, NULL, "file read failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, error message = '%s', file->mem = %p, total read size = %llu, bytes this sub-read = %llu, bytes actually read = %llu, offset = %llu", HDctime(&mytime), file->name, file->fd, myerrno, HDstrerror(myerrno), file->mem, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_read, (unsigned long long)myoffset); + offset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); + + HGOTO_ERROR(H5E_IO, H5E_READERROR, NULL, "file read failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, error message = '%s', file->mem = %p, total read size = %llu, bytes this sub-read = %llu, bytes actually read = %llu, offset = %llu", HDctime(&mytime), file->name, file->fd, myerrno, HDstrerror(myerrno), file->mem, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_read, (unsigned long long)offset); } /* end if */ HDassert(bytes_read >= 0); diff --git a/src/H5FDlog.c b/src/H5FDlog.c index 7c2297a..74df95c 100644 --- a/src/H5FDlog.c +++ b/src/H5FDlog.c @@ -117,7 +117,7 @@ typedef struct H5FD_log_t { * Whether to eliminate the family driver info and convert this file to * a single file */ - hbool_t fam_to_sec2; + hbool_t fam_to_single; /* Fields for tracking I/O operations */ unsigned char *nread; /* Number of reads from a file location */ @@ -635,13 +635,13 @@ H5FD_log_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr) /* Check for non-default FAPL */ if(H5P_FILE_ACCESS_DEFAULT != fapl_id) { /* This step is for h5repart tool only. If user wants to change file driver from - * family to sec2 while using h5repart, this private property should be set so that - * in the later step, the library can ignore the family driver information saved - * in the superblock. + * family to one that uses single files (sec2, etc.) while using h5repart, this + * private property should be set so that in the later step, the library can ignore + * the family driver information saved in the superblock. */ - if(H5P_exist_plist(plist, H5F_ACS_FAMILY_TO_SEC2_NAME) > 0) - if(H5P_get(plist, H5F_ACS_FAMILY_TO_SEC2_NAME, &file->fam_to_sec2) < 0) - HGOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't get property of changing family to sec2") + if(H5P_exist_plist(plist, H5F_ACS_FAMILY_TO_SINGLE_NAME) > 0) + if(H5P_get(plist, H5F_ACS_FAMILY_TO_SINGLE_NAME, &file->fam_to_single) < 0) + HGOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't get property of changing family to single") } /* end if */ /* Set return value */ @@ -900,7 +900,7 @@ H5FD_log_query(const H5FD_t *_file, unsigned long *flags /* out */) *flags |= H5FD_FEAT_DEFAULT_VFD_COMPATIBLE; /* VFD creates a file which can be opened with the default VFD */ /* Check for flags that are set by h5repart */ - if(file && file->fam_to_sec2) + if(file && file->fam_to_single) *flags |= H5FD_FEAT_IGNORE_DRVRINFO; /* Ignore the driver info when file is opened (which eliminates it) */ } /* end if */ @@ -1189,7 +1189,8 @@ H5FD_log_read(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, hadd } /* end if */ } /* end if */ - /* Seek to the correct location */ +#ifndef H5_HAVE_PREADWRITE + /* Seek to the correct location (if we don't have pread) */ if(addr != file->pos || OP_READ != file->op) { #ifdef H5_HAVE_GETTIMEOFDAY if(file->fa.flags & H5FD_LOG_TIME_SEEK) @@ -1232,6 +1233,7 @@ H5FD_log_read(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, hadd #endif /* H5_HAVE_GETTIMEOFDAY */ } /* end if */ } /* end if */ +#endif /* H5_HAVE_PREADWRITE */ /* * Read data, being careful of interrupted system calls, partial results, @@ -1245,6 +1247,7 @@ H5FD_log_read(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, hadd h5_posix_io_t bytes_in = 0; /* # of bytes to read */ h5_posix_io_ret_t bytes_read = -1; /* # of bytes actually read */ + HDoff_t offset = (HDoff_t)addr; /* Trying to read more bytes than the return type can handle is * undefined behavior in POSIX. @@ -1255,18 +1258,24 @@ H5FD_log_read(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, hadd bytes_in = (h5_posix_io_t)size; do { +#ifdef H5_HAVE_PREADWRITE + bytes_read = HDpread(file->fd, buf, bytes_in, offset); + offset += bytes_read; +#else bytes_read = HDread(file->fd, buf, bytes_in); +#endif /* H5_HAVE_PREADWRITE */ } while(-1 == bytes_read && EINTR == errno); if(-1 == bytes_read) { /* error */ int myerrno = errno; time_t mytime = HDtime(NULL); - HDoff_t myoffset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); + + offset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); if(file->fa.flags & H5FD_LOG_LOC_READ) HDfprintf(file->logfp, "Error! Reading: %10a-%10a (%10Zu bytes)\n", orig_addr, (orig_addr + orig_size) - 1, orig_size); - HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file read failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, error message = '%s', buf = %p, total read size = %llu, bytes this sub-read = %llu, bytes actually read = %llu, offset = %llu", HDctime(&mytime), file->filename, file->fd, myerrno, HDstrerror(myerrno), buf, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_read, (unsigned long long)myoffset); + HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file read failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, error message = '%s', buf = %p, total read size = %llu, bytes this sub-read = %llu, bytes actually read = %llu, offset = %llu", HDctime(&mytime), file->filename, file->fd, myerrno, HDstrerror(myerrno), buf, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_read, (unsigned long long)offset); } /* end if */ if(0 == bytes_read) { @@ -1396,7 +1405,8 @@ H5FD_log_write(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, had file->nwrite[tmp_addr++]++; } /* end if */ - /* Seek to the correct location */ +#ifndef H5_HAVE_PREADWRITE + /* Seek to the correct location (if we don't have pwrite) */ if(addr != file->pos || OP_WRITE != file->op) { #ifdef H5_HAVE_GETTIMEOFDAY if(file->fa.flags & H5FD_LOG_TIME_SEEK) @@ -1439,6 +1449,7 @@ H5FD_log_write(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, had #endif /* H5_HAVE_GETTIMEOFDAY */ } /* end if */ } /* end if */ +#endif /* H5_HAVE_PREADWRITE */ /* * Write the data, being careful of interrupted system calls and partial @@ -1452,6 +1463,7 @@ H5FD_log_write(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, had h5_posix_io_t bytes_in = 0; /* # of bytes to write */ h5_posix_io_ret_t bytes_wrote = -1; /* # of bytes written */ + HDoff_t offset = (HDoff_t)addr; /* Trying to write more bytes than the return type can handle is * undefined behavior in POSIX. @@ -1462,18 +1474,24 @@ H5FD_log_write(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, had bytes_in = (h5_posix_io_t)size; do { +#ifdef H5_HAVE_PREADWRITE + bytes_wrote = HDpwrite(file->fd, buf, bytes_in, offset); + offset += bytes_wrote; +#else bytes_wrote = HDwrite(file->fd, buf, bytes_in); +#endif /* H5_HAVE_PREADWRITE */ } while(-1 == bytes_wrote && EINTR == errno); if(-1 == bytes_wrote) { /* error */ int myerrno = errno; time_t mytime = HDtime(NULL); - HDoff_t myoffset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); + + offset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); if(file->fa.flags & H5FD_LOG_LOC_WRITE) HDfprintf(file->logfp, "Error! Writing: %10a-%10a (%10Zu bytes)\n", orig_addr, (orig_addr + orig_size) - 1, orig_size); - HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "file write failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, error message = '%s', buf = %p, total write size = %llu, bytes this sub-write = %llu, bytes actually written = %llu, offset = %llu", HDctime(&mytime), file->filename, file->fd, myerrno, HDstrerror(myerrno), buf, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_wrote, (unsigned long long)myoffset); + HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "file write failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, error message = '%s', buf = %p, total write size = %llu, bytes this sub-write = %llu, bytes actually written = %llu, offset = %llu", HDctime(&mytime), file->filename, file->fd, myerrno, HDstrerror(myerrno), buf, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_wrote, (unsigned long long)offset); } /* end if */ HDassert(bytes_wrote > 0); diff --git a/src/H5FDmpio.c b/src/H5FDmpio.c index 87f8b6a..efbdafe 100644 --- a/src/H5FDmpio.c +++ b/src/H5FDmpio.c @@ -1414,32 +1414,35 @@ static herr_t H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, hid_t H5_ATTR_UNUSED dxpl_id, haddr_t addr, size_t size, void *buf/*out*/) { - H5FD_mpio_t *file = (H5FD_mpio_t*)_file; - MPI_Offset mpi_off; - MPI_Status mpi_stat; /* Status from I/O operation */ - int mpi_code; /* mpi return code */ - MPI_Datatype buf_type = MPI_BYTE; /* MPI description of the selection in memory */ - int size_i; /* Integer copy of 'size' to read */ + H5FD_mpio_t *file = (H5FD_mpio_t*)_file; + MPI_Offset mpi_off; + MPI_Status mpi_stat; /* Status from I/O operation */ + int mpi_code; /* mpi return code */ + MPI_Datatype buf_type = MPI_BYTE; /* MPI description of the selection in memory */ + int size_i; /* Integer copy of 'size' to read */ #if MPI_VERSION >= 3 - MPI_Count bytes_read; /* Number of bytes read in */ - MPI_Count type_size; /* MPI datatype used for I/O's size */ - MPI_Count io_size; /* Actual number of bytes requested */ - MPI_Count n; + MPI_Count bytes_read = 0; /* Number of bytes read in */ + MPI_Count type_size; /* MPI datatype used for I/O's size */ + MPI_Count io_size; /* Actual number of bytes requested */ + MPI_Count n; #else - int bytes_read; /* Number of bytes read in */ - int type_size; /* MPI datatype used for I/O's size */ - int io_size; /* Actual number of bytes requested */ - int n; + int bytes_read = 0; /* Number of bytes read in */ + int type_size; /* MPI datatype used for I/O's size */ + int io_size; /* Actual number of bytes requested */ + int n; #endif - hbool_t use_view_this_time = FALSE; - herr_t ret_value = SUCCEED; + hbool_t use_view_this_time = FALSE; + hbool_t rank0_bcast = FALSE; /* If read-with-rank0-and-bcast flag was used */ + herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI_NOINIT #ifdef H5FDmpio_DEBUG - if (H5FD_mpio_Debug[(int)'t']) - fprintf(stdout, "Entering H5FD_mpio_read\n" ); + if(H5FD_mpio_Debug[(int)'t']) + HDfprintf(stdout, "%s: Entering\n", FUNC); #endif + + /* Sanity checks */ HDassert(file); HDassert(H5FD_MPIO==file->pub.driver_id); HDassert(buf); @@ -1448,21 +1451,20 @@ H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, HDmemset(&mpi_stat,0,sizeof(MPI_Status)); /* some numeric conversions */ - if (H5FD_mpi_haddr_to_MPIOff(addr, &mpi_off/*out*/)<0) + if(H5FD_mpi_haddr_to_MPIOff(addr, &mpi_off/*out*/) < 0) HGOTO_ERROR(H5E_INTERNAL, H5E_BADRANGE, FAIL, "can't convert from haddr to MPI off") size_i = (int)size; - if ((hsize_t)size_i != size) + if((hsize_t)size_i != size) HGOTO_ERROR(H5E_INTERNAL, H5E_BADRANGE, FAIL, "can't convert from size to size_i") #ifdef H5FDmpio_DEBUG - if (H5FD_mpio_Debug[(int)'r']) - fprintf(stdout, "in H5FD_mpio_read mpi_off=%ld size_i=%d\n", - (long)mpi_off, size_i ); + if(H5FD_mpio_Debug[(int)'r']) + HDfprintf(stdout, "%s: mpi_off = %ld size_i = %d\n", FUNC, (long)mpi_off, size_i); #endif /* Only look for MPI views for raw data transfers */ if(type == H5FD_MEM_DRAW) { - H5FD_mpio_xfer_t xfer_mode; /* I/O transfer mode */ + H5FD_mpio_xfer_t xfer_mode; /* I/O transfer mode */ /* Get the transfer mode from the API context */ if(H5CX_get_io_xfer_mode(&xfer_mode) < 0) @@ -1474,8 +1476,8 @@ H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, * us to test that btype=ftype=MPI_BYTE (or even MPI_TYPE_NULL, which * could mean "use MPI_BYTE" by convention). */ - if(xfer_mode==H5FD_MPIO_COLLECTIVE) { - MPI_Datatype file_type; + if(xfer_mode == H5FD_MPIO_COLLECTIVE) { + MPI_Datatype file_type; /* Remember that views are used */ use_view_this_time = TRUE; @@ -1502,8 +1504,8 @@ H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, H5FD_mpio_collective_opt_t coll_opt_mode; #ifdef H5FDmpio_DEBUG - if (H5FD_mpio_Debug[(int)'t']) - fprintf(stdout, "H5FD_mpio_read: using MPIO collective mode\n"); + if(H5FD_mpio_Debug[(int)'r']) + HDfprintf(stdout, "%s: using MPIO collective mode\n", FUNC); #endif /* Get the collective_opt property to check whether the application wants to do IO individually. */ if(H5CX_get_mpio_coll_opt(&coll_opt_mode) < 0) @@ -1511,16 +1513,33 @@ H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, if(coll_opt_mode == H5FD_MPIO_COLLECTIVE_IO) { #ifdef H5FDmpio_DEBUG - if(H5FD_mpio_Debug[(int)'t']) - fprintf(stdout, "H5FD_mpio_read: doing MPI collective IO\n"); + if(H5FD_mpio_Debug[(int)'r']) + HDfprintf(stdout, "%s: doing MPI collective IO\n", FUNC); #endif - if(MPI_SUCCESS != (mpi_code = MPI_File_read_at_all(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat))) - HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at_all failed", mpi_code) + /* Check whether we should read from rank 0 and broadcast to other ranks */ + if(H5CX_get_mpio_rank0_bcast()) { +#ifdef H5FDmpio_DEBUG + if(H5FD_mpio_Debug[(int)'r']) + HDfprintf(stdout, "%s: doing read-rank0-and-MPI_Bcast\n", FUNC); +#endif + /* Indicate path we've taken */ + rank0_bcast = TRUE; + + /* Read on rank 0 Bcast to other ranks */ + if(file->mpi_rank == 0) + if(MPI_SUCCESS != (mpi_code = MPI_File_read_at(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat))) + HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at failed", mpi_code) + if(MPI_SUCCESS != (mpi_code = MPI_Bcast(buf, size_i, buf_type, 0, file->comm))) + HMPI_GOTO_ERROR(FAIL, "MPI_Bcast failed", mpi_code) + } /* end if */ + else + if(MPI_SUCCESS != (mpi_code = MPI_File_read_at_all(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat))) + HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at_all failed", mpi_code) } /* end if */ else { #ifdef H5FDmpio_DEBUG - if(H5FD_mpio_Debug[(int)'t']) - fprintf(stdout, "H5FD_mpio_read: doing MPI independent IO\n"); + if(H5FD_mpio_Debug[(int)'r']) + HDfprintf(stdout, "%s: doing MPI independent IO\n", FUNC); #endif if(MPI_SUCCESS != (mpi_code = MPI_File_read_at(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat))) @@ -1532,44 +1551,57 @@ H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, */ if(MPI_SUCCESS != (mpi_code = MPI_File_set_view(file->f, (MPI_Offset)0, MPI_BYTE, MPI_BYTE, H5FD_mpi_native_g, file->info))) HMPI_GOTO_ERROR(FAIL, "MPI_File_set_view failed", mpi_code) - } else { + } /* end if */ + else if(MPI_SUCCESS != (mpi_code = MPI_File_read_at(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat))) HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at failed", mpi_code) - } - /* How many bytes were actually read? */ + /* Only retrieve bytes read if this rank _actually_ participated in I/O */ + if(!rank0_bcast || (rank0_bcast && file->mpi_rank == 0) ) { + /* How many bytes were actually read? */ #if MPI_VERSION >= 3 - if (MPI_SUCCESS != (mpi_code = MPI_Get_elements_x(&mpi_stat, buf_type, &bytes_read))) + if(MPI_SUCCESS != (mpi_code = MPI_Get_elements_x(&mpi_stat, buf_type, &bytes_read))) #else - if (MPI_SUCCESS != (mpi_code = MPI_Get_elements(&mpi_stat, MPI_BYTE, &bytes_read))) + if(MPI_SUCCESS != (mpi_code = MPI_Get_elements(&mpi_stat, MPI_BYTE, &bytes_read))) #endif - HMPI_GOTO_ERROR(FAIL, "MPI_Get_elements failed", mpi_code) + HMPI_GOTO_ERROR(FAIL, "MPI_Get_elements failed", mpi_code) + } /* end if */ + + /* If the rank0-bcast feature was used, broadcast the # of bytes read to + * other ranks, which didn't perform any I/O. + */ + /* NOTE: This could be optimized further to be combined with the broadcast + * of the data. (QAK - 2019/1/2) + */ + if(rank0_bcast) + if(MPI_SUCCESS != MPI_Bcast(&bytes_read, 1, MPI_LONG_LONG, 0, file->comm)) + HMPI_GOTO_ERROR(FAIL, "MPI_Bcast failed", 0) /* Get the type's size */ #if MPI_VERSION >= 3 - if (MPI_SUCCESS != (mpi_code = MPI_Type_size_x(buf_type, &type_size))) + if(MPI_SUCCESS != (mpi_code = MPI_Type_size_x(buf_type, &type_size))) #else - if (MPI_SUCCESS != (mpi_code = MPI_Type_size(buf_type, &type_size))) + if(MPI_SUCCESS != (mpi_code = MPI_Type_size(buf_type, &type_size))) #endif HMPI_GOTO_ERROR(FAIL, "MPI_Type_size failed", mpi_code) /* Compute the actual number of bytes requested */ - io_size=type_size*size_i; + io_size = type_size * size_i; /* Check for read failure */ - if (bytes_read<0 || bytes_read>io_size) + if(bytes_read < 0 || bytes_read > io_size) HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file read failed") /* * This gives us zeroes beyond end of physical MPI file. */ - if ((n=(io_size-bytes_read)) > 0) + if((n = (io_size - bytes_read)) > 0) HDmemset((char*)buf+bytes_read, 0, (size_t)n); done: #ifdef H5FDmpio_DEBUG - if (H5FD_mpio_Debug[(int)'t']) - fprintf(stdout, "Leaving H5FD_mpio_read\n" ); + if(H5FD_mpio_Debug[(int)'t']) + HDfprintf(stdout, "%s: Leaving\n", FUNC); #endif FUNC_LEAVE_NOAPI(ret_value) diff --git a/src/H5FDsec2.c b/src/H5FDsec2.c index 32aff0f..54f5a95 100644 --- a/src/H5FDsec2.c +++ b/src/H5FDsec2.c @@ -94,7 +94,7 @@ typedef struct H5FD_sec2_t { * Whether to eliminate the family driver info and convert this file to * a single file. */ - hbool_t fam_to_sec2; + hbool_t fam_to_single; } H5FD_sec2_t; @@ -386,13 +386,13 @@ H5FD_sec2_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr) HGOTO_ERROR(H5E_VFL, H5E_BADTYPE, NULL, "not a file access property list") /* This step is for h5repart tool only. If user wants to change file driver from - * family to sec2 while using h5repart, this private property should be set so that - * in the later step, the library can ignore the family driver information saved - * in the superblock. + * family to one that uses single files (sec2, etc.) while using h5repart, this + * private property should be set so that in the later step, the library can ignore + * the family driver information saved in the superblock. */ - if(H5P_exist_plist(plist, H5F_ACS_FAMILY_TO_SEC2_NAME) > 0) - if(H5P_get(plist, H5F_ACS_FAMILY_TO_SEC2_NAME, &file->fam_to_sec2) < 0) - HGOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't get property of changing family to sec2") + if(H5P_exist_plist(plist, H5F_ACS_FAMILY_TO_SINGLE_NAME) > 0) + if(H5P_get(plist, H5F_ACS_FAMILY_TO_SINGLE_NAME, &file->fam_to_single) < 0) + HGOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't get property of changing family to single") } /* end if */ /* Set return value */ @@ -532,7 +532,7 @@ H5FD_sec2_query(const H5FD_t *_file, unsigned long *flags /* out */) *flags |= H5FD_FEAT_DEFAULT_VFD_COMPATIBLE; /* VFD creates a file which can be opened with the default VFD */ /* Check for flags that are set by h5repart */ - if(file && file->fam_to_sec2) + if(file && file->fam_to_single) *flags |= H5FD_FEAT_IGNORE_DRVRINFO; /* Ignore the driver info when file is opened (which eliminates it) */ } /* end if */ @@ -682,11 +682,13 @@ H5FD_sec2_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, hid_t H5_ATTR_UNUS if(REGION_OVERFLOW(addr, size)) HGOTO_ERROR(H5E_ARGS, H5E_OVERFLOW, FAIL, "addr overflow, addr = %llu", (unsigned long long)addr) - /* Seek to the correct location */ +#ifndef H5_HAVE_PREADWRITE + /* Seek to the correct location (if we don't have pread) */ if(addr != file->pos || OP_READ != file->op) { if(HDlseek(file->fd, (HDoff_t)addr, SEEK_SET) < 0) HSYS_GOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to seek to proper position") } /* end if */ +#endif /* H5_HAVE_PREADWRITE */ /* Read data, being careful of interrupted system calls, partial results, * and the end of the file. @@ -694,7 +696,8 @@ H5FD_sec2_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, hid_t H5_ATTR_UNUS while(size > 0) { h5_posix_io_t bytes_in = 0; /* # of bytes to read */ - h5_posix_io_ret_t bytes_read = -1; /* # of bytes actually read */ + h5_posix_io_ret_t bytes_read = -1; /* # of bytes actually read */ + HDoff_t offset = (HDoff_t)addr; /* Trying to read more bytes than the return type can handle is * undefined behavior in POSIX. @@ -705,15 +708,21 @@ H5FD_sec2_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, hid_t H5_ATTR_UNUS bytes_in = (h5_posix_io_t)size; do { +#ifdef H5_HAVE_PREADWRITE + bytes_read = HDpread(file->fd, buf, bytes_in, offset); + offset += bytes_read; +#else bytes_read = HDread(file->fd, buf, bytes_in); +#endif /* H5_HAVE_PREADWRITE */ } while(-1 == bytes_read && EINTR == errno); if(-1 == bytes_read) { /* error */ int myerrno = errno; time_t mytime = HDtime(NULL); - HDoff_t myoffset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); - HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file read failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, error message = '%s', buf = %p, total read size = %llu, bytes this sub-read = %llu, bytes actually read = %llu, offset = %llu", HDctime(&mytime), file->filename, file->fd, myerrno, HDstrerror(myerrno), buf, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_read, (unsigned long long)myoffset); + offset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); + + HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file read failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, error message = '%s', buf = %p, total read size = %llu, bytes this sub-read = %llu, bytes actually read = %llu, offset = %llu", HDctime(&mytime), file->filename, file->fd, myerrno, HDstrerror(myerrno), buf, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_read, (unsigned long long)offset); } /* end if */ if(0 == bytes_read) { @@ -777,11 +786,13 @@ H5FD_sec2_write(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, hid_t H5_ATTR_UNU if(REGION_OVERFLOW(addr, size)) HGOTO_ERROR(H5E_ARGS, H5E_OVERFLOW, FAIL, "addr overflow, addr = %llu, size = %llu", (unsigned long long)addr, (unsigned long long)size) - /* Seek to the correct location */ +#ifndef H5_HAVE_PREADWRITE + /* Seek to the correct location (if we don't have pwrite) */ if(addr != file->pos || OP_WRITE != file->op) { if(HDlseek(file->fd, (HDoff_t)addr, SEEK_SET) < 0) HSYS_GOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to seek to proper position") } /* end if */ +#endif /* H5_HAVE_PREADWRITE */ /* Write the data, being careful of interrupted system calls and partial * results @@ -790,6 +801,7 @@ H5FD_sec2_write(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, hid_t H5_ATTR_UNU h5_posix_io_t bytes_in = 0; /* # of bytes to write */ h5_posix_io_ret_t bytes_wrote = -1; /* # of bytes written */ + HDoff_t offset = (HDoff_t)addr; /* Trying to write more bytes than the return type can handle is * undefined behavior in POSIX. @@ -800,15 +812,21 @@ H5FD_sec2_write(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, hid_t H5_ATTR_UNU bytes_in = (h5_posix_io_t)size; do { +#ifdef H5_HAVE_PREADWRITE + bytes_wrote = HDpwrite(file->fd, buf, bytes_in, offset); + offset += bytes_wrote; +#else bytes_wrote = HDwrite(file->fd, buf, bytes_in); +#endif /* H5_HAVE_PREADWRITE */ } while(-1 == bytes_wrote && EINTR == errno); if(-1 == bytes_wrote) { /* error */ int myerrno = errno; time_t mytime = HDtime(NULL); - HDoff_t myoffset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); - HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "file write failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, error message = '%s', buf = %p, total write size = %llu, bytes this sub-write = %llu, bytes actually written = %llu, offset = %llu", HDctime(&mytime), file->filename, file->fd, myerrno, HDstrerror(myerrno), buf, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_wrote, (unsigned long long)myoffset); + offset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); + + HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "file write failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, error message = '%s', buf = %p, total write size = %llu, bytes this sub-write = %llu, bytes actually written = %llu, offset = %llu", HDctime(&mytime), file->filename, file->fd, myerrno, HDstrerror(myerrno), buf, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_wrote, (unsigned long long)offset); } /* end if */ HDassert(bytes_wrote > 0); diff --git a/src/H5FSprivate.h b/src/H5FSprivate.h index de1b4c1..31fc63c 100644 --- a/src/H5FSprivate.h +++ b/src/H5FSprivate.h @@ -25,9 +25,6 @@ #ifndef _H5FSprivate_H #define _H5FSprivate_H -/* Include package's public header */ -#include "H5FSpublic.h" - /* Private headers needed by this file */ #include "H5Fprivate.h" /* File access */ #include "H5FLprivate.h" /* Free Lists */ diff --git a/src/H5FSpublic.h b/src/H5FSpublic.h deleted file mode 100644 index 3090d0d..0000000 --- a/src/H5FSpublic.h +++ /dev/null @@ -1,52 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * - * If you do not have access to either file, you may request a copy from * - * help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/*------------------------------------------------------------------------- - * - * Created: H5FSpublic.h - * May 2 2006 - * Quincey Koziol <koziol@hdfgroup.org> - * - * Purpose: Public declarations for the file free space package. - * - *------------------------------------------------------------------------- - */ - -#ifndef _H5FSpublic_H -#define _H5FSpublic_H - -/* Public headers needed by this file */ -#include "H5public.h" - -/*****************/ -/* Public Macros */ -/*****************/ - -/*******************/ -/* Public Typedefs */ -/*******************/ - -/**********************************/ -/* Public API Function Prototypes */ -/**********************************/ - -#ifdef __cplusplus -extern "C" { -#endif - -#ifdef __cplusplus -} -#endif - -#endif /* _H5FSpublic_H */ - diff --git a/src/H5Fefc.c b/src/H5Fefc.c index 07bb644..a394071 100644 --- a/src/H5Fefc.c +++ b/src/H5Fefc.c @@ -481,7 +481,7 @@ H5F__efc_release(H5F_efc_t *efc) { herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Sanity checks */ HDassert(efc); @@ -491,7 +491,7 @@ H5F__efc_release(H5F_efc_t *efc) HGOTO_ERROR(H5E_FILE, H5E_CANTRELEASE, FAIL, "can't remove entry from external file cache") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_efc_release() */ diff --git a/src/H5Fint.c b/src/H5Fint.c index 031f37c..253ec3c 100644 --- a/src/H5Fint.c +++ b/src/H5Fint.c @@ -483,6 +483,30 @@ done: } /* end H5F_get_objects_cb() */ +/*------------------------------------------------------------------------- + * Function: H5F_set_min_dset_ohdr + * + * Purpose: Set the crt_dset_ohdr_flag field with a new value. + * + * Return: SUCCEED/FAIL + *------------------------------------------------------------------------- + */ +herr_t +H5F_set_min_dset_ohdr(H5F_t *f, hbool_t minimize) +{ + /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */ + FUNC_ENTER_NOAPI_NOINIT_NOERR + + /* Sanity check */ + HDassert(f); + HDassert(f->shared); + + f->shared->crt_dset_min_ohdr_flag = minimize; + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* H5F_set_min_dset_ohdr() */ + + /*-------------------------------------------------------------------------- * Function: H5F__build_name * @@ -795,7 +819,7 @@ H5F__is_hdf5(const char *name) haddr_t sig_addr; /* Addess of hdf5 file signature */ htri_t ret_value = FAIL; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Open the file at the virtual file layer */ if(NULL == (file = H5FD_open(name, H5F_ACC_RDONLY, H5P_FILE_ACCESS_DEFAULT, HADDR_UNDEF))) @@ -812,7 +836,7 @@ done: if(H5FD_close(file) < 0 && ret_value >= 0) HDONE_ERROR(H5E_IO, H5E_CANTCLOSEFILE, FAIL, "unable to close file") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5F__is_hdf5() */ @@ -1333,78 +1357,6 @@ H5F__dest(H5F_t *f, hbool_t flush) /*------------------------------------------------------------------------- - * Function: H5F__create - * - * Purpose: Internal routine to create a file. - * - * Note: This routine is needed so that there's a non-API routine for - * creating files that can set up VOL / SWMR info - * (which need a DXPL). - * - * Return: Success: Non-NULL, pointer to new file object. - * Failure: NULL - * - * Programmer: Quincey Koziol - * December 13, 2017 - * - *------------------------------------------------------------------------- - */ -H5F_t * -H5F__create(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id) -{ - H5F_t *ret_value = NULL; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Sanity check */ - HDassert(filename); - - /* Create a new file or truncate an existing file. */ - if(NULL == (ret_value = H5F_open(filename, flags, fcpl_id, fapl_id))) - HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to open file") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5F__create() */ - - -/*------------------------------------------------------------------------- - * Function: H5F__open - * - * Purpose: Internal routine to open a file. - * - * Note: This routine is needed so that there's a non-API routine for - * opening files that can set up VOL / SWMR info - * (which need a DXPL). - * - * Return: Success: Non-NULL, pointer to new file object. - * Failure: NULL - * - * Programmer: Quincey Koziol - * December 13, 2017 - * - *------------------------------------------------------------------------- - */ -H5F_t * -H5F__open(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id) -{ - H5F_t *ret_value = NULL; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Sanity check */ - HDassert(filename); - - /* Open the file */ - if(NULL == (ret_value = H5F_open(filename, flags, fcpl_id, fapl_id))) - HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to open file") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5F__open() */ - - -/*------------------------------------------------------------------------- * Function: H5F_open * * Purpose: Opens (or creates) a file. This function understands the @@ -1926,7 +1878,7 @@ H5F__flush_phase2(H5F_t *f, hbool_t closing) /*------------------------------------------------------------------------- - * Function: H5F__flush_real + * Function: H5F__flush * * Purpose: Flushes cached data. * @@ -1934,7 +1886,7 @@ H5F__flush_phase2(H5F_t *f, hbool_t closing) *------------------------------------------------------------------------- */ herr_t -H5F__flush_real(H5F_t *f) +H5F__flush(H5F_t *f) { herr_t ret_value = SUCCEED; /* Return value */ @@ -1954,49 +1906,6 @@ H5F__flush_real(H5F_t *f) HDONE_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush file data") FUNC_LEAVE_NOAPI(ret_value) -} /* end H5F__flush_real() */ - - -/*------------------------------------------------------------------------- - * Function: H5F__flush - * - * Purpose: Internal routine to flush a file. - * - * Note: This routine is needed so that there's a non-API routine for - * flushing files that can set up VOL / SWMR info - * (which need a DXPL). - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * December 13, 2017 - * - *------------------------------------------------------------------------- - */ -herr_t -H5F__flush(H5F_t *f, H5F_scope_t scope) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Sanity check */ - HDassert(f); - HDassert(f->shared); - - /* Flush other files, depending on scope */ - if(H5F_SCOPE_GLOBAL == scope) { - /* Call the flush routine for mounted file hierarchies */ - if(H5F_flush_mounts(f) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush mounted file hierarchy") - } /* end if */ - else - /* Call the flush routine, for this file */ - if(H5F__flush_real(f) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush file's cached information") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) } /* end H5F__flush() */ @@ -2005,10 +1914,6 @@ done: * * Purpose: Internal routine to close a file. * - * Note: This routine is needed so that there's a non-API routine for - * closing files that can set up VOL / SWMR info - * (which need a DXPL). - * * Return: Non-negative on success / Negative on failure * * Programmer: Quincey Koziol @@ -2022,7 +1927,7 @@ H5F__close(hid_t file_id) H5F_t *f; /* File pointer */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Flush file if this is the last reference to this id and we have write * intent, unless it will be flushed by the "shared" file being closed. @@ -2037,7 +1942,7 @@ H5F__close(hid_t file_id) if((nref = H5I_get_ref(file_id, FALSE)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "can't get ID ref count") if(nref == 1) - if(H5F__flush_real(f) < 0) + if(H5F__flush(f) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush cache") } /* end if */ @@ -2047,7 +1952,7 @@ H5F__close(hid_t file_id) HGOTO_ERROR(H5E_FILE, H5E_CANTDEC, FAIL, "decrementing file ID failed") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5F__close() */ @@ -2073,7 +1978,7 @@ H5F__close_cb(H5F_t *f) { herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(f); @@ -2105,7 +2010,7 @@ H5F__close_cb(H5F_t *f) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "can't close file") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5F__close_cb() */ @@ -2780,7 +2685,7 @@ H5F__set_libver_bounds(H5F_t *f, H5F_libver_t low, H5F_libver_t high) { herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Sanity checks */ HDassert(f); @@ -2808,7 +2713,7 @@ H5F__set_libver_bounds(H5F_t *f, H5F_libver_t low, H5F_libver_t high) * * QAK - April, 2018 */ - if(H5F__flush_real(f) < 0) + if(H5F__flush(f) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush file's cached information") /* Set the new bounds */ @@ -2822,45 +2727,10 @@ done: /*------------------------------------------------------------------------- - * Function: H5F__get_freespace - * - * Purpose: Private version of H5Fget_freespace - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: SUCCEED - * Failure: FAIL - *------------------------------------------------------------------------- - */ -herr_t -H5F__get_freespace(H5F_t *f, hsize_t *tot_space) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Sanity check */ - HDassert(f); - HDassert(f->shared); - - /* Go get the actual amount of free space in the file */ - if(H5MF_get_freespace(f, tot_space, NULL) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to check free space for file") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* H5F__get_freespace() */ - - -/*------------------------------------------------------------------------- * Function: H5F__get_file_image * * Purpose: Private version of H5Fget_file_image * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: Bytes copied / number of bytes needed. * Failure: negative value *------------------------------------------------------------------------- @@ -2872,7 +2742,7 @@ H5F__get_file_image(H5F_t *file, void *buf_ptr, size_t buf_len) haddr_t eoa; /* End of file address */ ssize_t ret_value = -1; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check args */ if(!file || !file->shared || !file->shared->lf) @@ -2959,7 +2829,7 @@ H5F__get_file_image(H5F_t *file, void *buf_ptr, size_t buf_len) } /* end if */ done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5F__get_file_image() */ @@ -2968,9 +2838,6 @@ done: * * Purpose: Private version of H5Fget_info * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: SUCCEED * Failure: FAIL *------------------------------------------------------------------------- @@ -2980,7 +2847,7 @@ H5F__get_info(H5F_t *f, H5F_info2_t *finfo) { herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(f); @@ -3009,7 +2876,7 @@ H5F__get_info(H5F_t *f, H5F_info2_t *finfo) finfo->free.version = HDF5_FREESPACE_VERSION; done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5F__get_info() */ @@ -3098,39 +2965,6 @@ H5F_set_retries(H5F_t *f) /*------------------------------------------------------------------------- - * Function: H5F__get_free_sections - * - * Purpose: Private version of H5Fget_free_sections - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: non-negative, the total # of free space sections - * Failure: negative - *------------------------------------------------------------------------- - */ -ssize_t -H5F__get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, - H5F_sect_info_t *sect_info) -{ - ssize_t ret_value = -1; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Sanity check */ - HDassert(f); - HDassert(f->shared); - - /* Go get the actual amount of free space in the file */ - if((ret_value = H5MF_get_free_sections(f, type, nsects, sect_info)) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to get free space sections for file") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* H5F__get_free_sections() */ - - -/*------------------------------------------------------------------------- * Function: H5F_object_flush_cb * * Purpose: To invoke the callback function for object flush that is set @@ -3426,9 +3260,6 @@ done: * set up flush dependency/proxy even for file opened without * SWMR to resolve issues with opened objects. * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: SUCCEED * Failure: FAIL *------------------------------------------------------------------------- @@ -3448,7 +3279,7 @@ H5F__start_swmr_write(H5F_t *f) hbool_t setup = FALSE; /* Boolean flag to indicate whether SWMR setting is enabled */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(f); @@ -3481,7 +3312,7 @@ H5F__start_swmr_write(H5F_t *f) HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush superblock extension") /* Flush data buffers */ - if(H5F__flush_real(f) < 0) + if(H5F__flush(f) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush f's cached information") /* Get the # of opened named datatypes and attributes */ @@ -3617,7 +3448,7 @@ done: if(obj_paths) H5MM_xfree(obj_paths); - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5F__start_swmr_write() */ @@ -3626,9 +3457,6 @@ done: * * Purpose: Private version of H5Fformat_convert * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: SUCCEED * Failure: FAIL *------------------------------------------------------------------------- @@ -3639,7 +3467,7 @@ H5F__format_convert(H5F_t *f) hbool_t mark_dirty = FALSE; /* Whether to mark the file's superblock dirty */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(f); @@ -3682,6 +3510,6 @@ H5F__format_convert(H5F_t *f) HGOTO_ERROR(H5E_FILE, H5E_CANTMARKDIRTY, FAIL, "unable to mark superblock as dirty") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5F__format_convert() */ diff --git a/src/H5Fmount.c b/src/H5Fmount.c index 4cd1edf..b04bd3a 100644 --- a/src/H5Fmount.c +++ b/src/H5Fmount.c @@ -112,7 +112,7 @@ H5F__mount(H5G_loc_t *loc, const char *name, H5F_t *child, hid_t H5_ATTR_UNUSED H5G_loc_t root_loc; /* Group location of root of file to mount */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE HDassert(loc); HDassert(name && *name); @@ -240,7 +240,7 @@ done: } } - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5F__mount() */ @@ -277,7 +277,7 @@ H5F__unmount(H5G_loc_t *loc, const char *name) int child_idx; /* Index of child in parent's mtab */ herr_t ret_value = SUCCEED; /*return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE HDassert(loc); HDassert(name && *name); @@ -390,7 +390,7 @@ done: if(mp_loc_setup) H5G_loc_free(&mp_loc); - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5F__unmount() */ @@ -651,7 +651,7 @@ H5F_flush_mounts_recurse(H5F_t *f) nerrors++; /* Call the "real" flush routine, for this file */ - if(H5F__flush_real(f) < 0) + if(H5F__flush(f) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush file's cached information") /* Check flush errors for children - errors are already on the stack */ diff --git a/src/H5Fpkg.h b/src/H5Fpkg.h index 2ab41de..663f84e 100644 --- a/src/H5Fpkg.h +++ b/src/H5Fpkg.h @@ -29,12 +29,10 @@ /* Get package's private header */ #include "H5Fprivate.h" -/* Other public headers needed by this file */ -#include "H5Bpublic.h" /* B-tree header, for H5B_NUM_BTREE_ID */ - /* Other private headers needed by this file */ #include "H5private.h" /* Generic Functions */ #include "H5ACprivate.h" /* Metadata cache */ +#include "H5Bprivate.h" /* B-trees */ #include "H5FLprivate.h" /* Free Lists */ #include "H5FOprivate.h" /* File objects */ #include "H5FSprivate.h" /* File free space */ @@ -353,6 +351,7 @@ struct H5F_file_t { /* Object flush info */ H5F_object_flush_t object_flush; /* Information for object flush callback */ + hbool_t crt_dset_min_ohdr_flag; /* flag to create minimized dataset object headers */ }; /* @@ -396,16 +395,11 @@ H5FL_EXTERN(H5F_file_t); /* General routines */ H5_DLL H5F_t *H5F__new(H5F_file_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5FD_t *lf); H5_DLL herr_t H5F__dest(H5F_t *f, hbool_t flush); -H5_DLL H5F_t *H5F__create(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id); -H5_DLL H5F_t *H5F__open(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id); -H5_DLL herr_t H5F__flush(H5F_t *f, H5F_scope_t scope); -H5_DLL herr_t H5F__flush_real(H5F_t *f); +H5_DLL herr_t H5F__flush(H5F_t *f); H5_DLL htri_t H5F__is_hdf5(const char *name); H5_DLL herr_t H5F_get_objects(const H5F_t *f, unsigned types, size_t max_index, hid_t *obj_id_list, hbool_t app_ref, size_t *obj_id_count_ptr); -H5_DLL herr_t H5F__get_freespace(H5F_t *f, hsize_t *tot_space); H5_DLL ssize_t H5F__get_file_image(H5F_t *f, void *buf_ptr, size_t buf_len); H5_DLL herr_t H5F__get_info(H5F_t *f, H5F_info2_t *finfo); -H5_DLL ssize_t H5F__get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, H5F_sect_info_t *sect_info); H5_DLL herr_t H5F__get_metadata_read_retry_info(H5F_t *file, H5F_retry_info_t *info); H5_DLL herr_t H5F__format_convert(H5F_t *f); H5_DLL herr_t H5F__start_swmr_write(H5F_t *f); diff --git a/src/H5Fprivate.h b/src/H5Fprivate.h index 700cb89..0c2f5f2 100644 --- a/src/H5Fprivate.h +++ b/src/H5Fprivate.h @@ -331,6 +331,8 @@ typedef struct H5F_t H5F_t; #define H5F_POINT_OF_NO_RETURN(F) ((F)->shared->fs.point_of_no_return) #define H5F_FIRST_ALLOC_DEALLOC(F) ((F)->shared->first_alloc_dealloc) #define H5F_EOA_PRE_FSM_FSALLOC(F) ((F)->shared->eoa_pre_fsm_fsalloc) +#define H5F_GET_MIN_DSET_OHDR(F) ((F)->shared->crt_dset_min_ohdr_flag) +#define H5F_SET_MIN_DSET_OHDR(F, V) ((F)->shared->crt_dset_min_ohdr_flag = (V)) #else /* H5F_MODULE */ #define H5F_LOW_BOUND(F) (H5F_get_low_bound(F)) #define H5F_HIGH_BOUND(F) (H5F_get_high_bound(F)) @@ -388,6 +390,8 @@ typedef struct H5F_t H5F_t; #define H5F_POINT_OF_NO_RETURN(F) (H5F_get_point_of_no_return(F)) #define H5F_FIRST_ALLOC_DEALLOC(F) (H5F_get_first_alloc_dealloc(F)) #define H5F_EOA_PRE_FSM_FSALLOC(F) (H5F_get_eoa_pre_fsm_fsalloc(F)) +#define H5F_GET_MIN_DSET_OHDR(F) (H5F_get_min_dset_ohdr(F)) +#define H5F_SET_MIN_DSET_OHDR(F, V) (H5F_set_min_dset_ohdr((F), (V))) #endif /* H5F_MODULE */ @@ -482,7 +486,7 @@ typedef struct H5F_t H5F_t; #define H5F_ACS_CLOSE_DEGREE_NAME "close_degree" /* File close degree */ #define H5F_ACS_FAMILY_OFFSET_NAME "family_offset" /* Offset position in file for family file driver */ #define H5F_ACS_FAMILY_NEWSIZE_NAME "family_newsize" /* New member size of family driver. (private property only used by h5repart) */ -#define H5F_ACS_FAMILY_TO_SEC2_NAME "family_to_sec2" /* Whether to convert family to sec2 driver. (private property only used by h5repart) */ +#define H5F_ACS_FAMILY_TO_SINGLE_NAME "family_to_single" /* Whether to convert family to a single-file driver. (private property only used by h5repart) */ #define H5F_ACS_MULTI_TYPE_NAME "multi_type" /* Data type in multi file driver */ #define H5F_ACS_LIBVER_LOW_BOUND_NAME "libver_low_bound" /* 'low' bound of library format versions */ #define H5F_ACS_LIBVER_HIGH_BOUND_NAME "libver_high_bound" /* 'high' bound of library format versions */ @@ -741,6 +745,8 @@ H5_DLL hsize_t H5F_get_pgend_meta_thres(const H5F_t *f); H5_DLL hbool_t H5F_get_point_of_no_return(const H5F_t *f); H5_DLL hbool_t H5F_get_first_alloc_dealloc(const H5F_t *f); H5_DLL haddr_t H5F_get_eoa_pre_fsm_fsalloc(const H5F_t *f); +H5_DLL hbool_t H5F_get_min_dset_ohdr(const H5F_t *f); +H5_DLL herr_t H5F_set_min_dset_ohdr(H5F_t *f, hbool_t minimize); /* Functions than retrieve values set/cached from the superblock/FCPL */ H5_DLL haddr_t H5F_get_base_addr(const H5F_t *f); diff --git a/src/H5Fpublic.h b/src/H5Fpublic.h index 73c59f5..8a475d1 100644 --- a/src/H5Fpublic.h +++ b/src/H5Fpublic.h @@ -233,7 +233,7 @@ H5_DLL herr_t H5Fflush(hid_t object_id, H5F_scope_t scope); H5_DLL herr_t H5Fclose(hid_t file_id); H5_DLL hid_t H5Fget_create_plist(hid_t file_id); H5_DLL hid_t H5Fget_access_plist(hid_t file_id); -H5_DLL herr_t H5Fget_intent(hid_t file_id, unsigned * intent); +H5_DLL herr_t H5Fget_intent(hid_t file_id, unsigned *intent); H5_DLL ssize_t H5Fget_obj_count(hid_t file_id, unsigned types); H5_DLL ssize_t H5Fget_obj_ids(hid_t file_id, unsigned types, size_t max_objs, hid_t *obj_id_list); H5_DLL herr_t H5Fget_vfd_handle(hid_t file_id, hid_t fapl, void **file_handle); @@ -273,6 +273,8 @@ H5_DLL herr_t H5Freset_page_buffering_stats(hid_t file_id); H5_DLL herr_t H5Fget_page_buffering_stats(hid_t file_id, unsigned accesses[2], unsigned hits[2], unsigned misses[2], unsigned evictions[2], unsigned bypasses[2]); H5_DLL herr_t H5Fget_mdc_image_info(hid_t file_id, haddr_t *image_addr, hsize_t *image_size); +H5_DLL herr_t H5Fget_dset_no_attrs_hint(hid_t file_id, hbool_t *minimize); +H5_DLL herr_t H5Fset_dset_no_attrs_hint(hid_t file_id, hbool_t minimize); #ifdef H5_HAVE_PARALLEL H5_DLL herr_t H5Fset_mpi_atomicity(hid_t file_id, hbool_t flag); diff --git a/src/H5Fquery.c b/src/H5Fquery.c index be24072..e02e402 100644 --- a/src/H5Fquery.c +++ b/src/H5Fquery.c @@ -514,6 +514,25 @@ H5F_sym_leaf_k(const H5F_t *f) /*------------------------------------------------------------------------- + * Function: H5F_get_min_dset_ohdr + * + * Purpose: Get the setting flag for minimized dataset object headers + * + * Return: TRUE/FALSE as set in file + *------------------------------------------------------------------------- + */ +hbool_t +H5F_get_min_dset_ohdr(const H5F_t *f) +{ + FUNC_ENTER_NOAPI_NOINIT_NOERR + + HDassert(f); + + FUNC_LEAVE_NOAPI(f->shared->crt_dset_min_ohdr_flag) +} /* end H5F_get_min_dset_ohdr */ + + +/*------------------------------------------------------------------------- * Function: H5F_Kvalue * * Purpose: Replaced a macro to retrieve a B-tree key value for a certain @@ -400,10 +400,10 @@ H5Gcreate_anon(hid_t loc_id, hid_t gcpl_id, hid_t gapl_id) HDmemset(&gcrt_info.cache, 0, sizeof(gcrt_info.cache)); /* Create the new group & get its ID */ - if(NULL == (grp = H5G__create_anon(loc.oloc->file, &gcrt_info))) - HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, H5I_INVALID_HID, "unable to create group") + if(NULL == (grp = H5G__create(loc.oloc->file, &gcrt_info))) + HGOTO_ERROR(H5E_SYM, H5E_CANTCREATE, H5I_INVALID_HID, "unable to create group") if((ret_value = H5I_register(H5I_GROUP, grp, TRUE)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register group") + HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register group") done: /* Release the group's object header, if it was created */ @@ -509,10 +509,11 @@ H5Gget_create_plist(hid_t group_id) /* Check args */ if(NULL == (group = (H5G_t *)H5I_object_verify(group_id, H5I_GROUP))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "not a group") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "not a group") - if((ret_value = H5G__get_create_plist(group)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5I_INVALID_HID, "can't get group's creation property list") + /* Retrieve the GCPL */ + if((ret_value = H5G_get_create_plist(group)) < 0) + HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5I_INVALID_HID, "can't get group's creation property list") done: FUNC_LEAVE_API(ret_value) @@ -554,7 +555,7 @@ H5Gget_info(hid_t grp_id, H5G_info_t *grp_info) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") /* Retrieve the group's information */ - if(H5G__get_info(&loc, grp_info/*out*/) < 0) + if(H5G__obj_info(loc.oloc, grp_info) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't retrieve group info") done: @@ -722,9 +723,9 @@ H5Gflush(hid_t group_id) if(H5CX_set_loc(group_id) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTSET, FAIL, "can't set collective metadata read info") - /* Flush group's metadata to file */ - if(H5G__flush(grp, group_id) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTFLUSH, FAIL, "unable to flush group") + /* Flush metadata to file */ + if(H5O_flush_common(&grp->oloc, group_id) < 0) + HGOTO_ERROR(H5E_SYM, H5E_CANTFLUSH, FAIL, "unable to flush group and object flush callback") done: FUNC_LEAVE_API(ret_value) @@ -761,7 +762,7 @@ H5Grefresh(hid_t group_id) HGOTO_ERROR(H5E_SYM, H5E_CANTSET, FAIL, "can't set collective metadata read info") /* Call private function to refresh group object */ - if((H5G__refresh(grp, group_id)) < 0) + if((H5O_refresh_metadata(group_id, grp->oloc)) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTLOAD, FAIL, "unable to refresh group") done: diff --git a/src/H5Gdeprec.c b/src/H5Gdeprec.c index f6c6d8f..57bbcd9 100644 --- a/src/H5Gdeprec.c +++ b/src/H5Gdeprec.c @@ -76,24 +76,11 @@ static herr_t H5G__link(hid_t cur_loc_id, const char *cur_name, H5G_link_t type, hid_t new_loc_id, const char *new_name, hid_t lcpl_id); static herr_t H5G__move(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, const char *dst_name, hid_t lcpl_id); -static herr_t H5G__unlink(H5G_loc_t *loc, const char *name); -static herr_t H5G__get_linkval(const H5G_loc_t *loc, const char *name, size_t size, - char *buf/*out*/); -static herr_t H5G__set_comment(const H5G_loc_t *loc, const char *name, - const char *comment); -static int H5G__get_comment(const H5G_loc_t *loc, const char *name, char *buf, - size_t bufsize); -static herr_t H5G__iterate(hid_t loc_id, const char *name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t idx, hsize_t *last_lnk, - const H5G_link_iterate_t *lnk_op, void *op_data); -static herr_t H5G__get_num_objs(const H5O_loc_t *oloc, H5G_info_t *grp_info); static herr_t H5G__get_objinfo_cb(H5G_loc_t *grp_loc/*in*/, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/); static herr_t H5G__get_objinfo(const H5G_loc_t *loc, const char *name, hbool_t follow_link, H5G_stat_t *statbuf/*out*/); -static ssize_t H5G__get_objname_by_idx(const H5O_loc_t *oloc, H5_index_t idx_type, - H5_iter_order_t order, hsize_t idx, char *name, size_t size); static H5G_obj_t H5G__obj_get_type_by_idx(H5O_loc_t *oloc, hsize_t idx); #endif /* H5_NO_DEPRECATED_SYMBOLS */ @@ -197,9 +184,9 @@ H5Gcreate1(hid_t loc_id, const char *name, size_t size_hint) /* Check arguments */ if(H5G_loc(loc_id, &loc) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if(!name || !*name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name given") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name given") /* Check if we need to create a non-standard GCPL */ if(size_hint > 0) { @@ -238,7 +225,7 @@ H5Gcreate1(hid_t loc_id, const char *name, size_t size_hint) if(NULL == (grp = H5G__create_named(&loc, name, H5P_LINK_CREATE_DEFAULT, tmp_gcpl))) HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to create group") if((ret_value = H5I_register(H5I_GROUP, grp, TRUE)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTREGISTER, FAIL, "unable to register group") + HGOTO_ERROR(H5E_SYM, H5E_CANTREGISTER, FAIL, "unable to register group") done: if(tmp_gcpl > 0 && tmp_gcpl != H5P_GROUP_CREATE_DEFAULT) @@ -321,9 +308,9 @@ H5Glink(hid_t cur_loc_id, H5G_link_t type, const char *cur_name, const char *new /* Check arguments */ if(!cur_name || !*cur_name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no current name specified") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no current name specified") if(!new_name || !*new_name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no new name specified") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no new name specified") /* Set up collective metadata if appropriate */ if(H5CX_set_loc(cur_loc_id) < 0) @@ -357,9 +344,9 @@ H5Glink2(hid_t cur_loc_id, const char *cur_name, H5G_link_t type, /* Check arguments */ if(!cur_name || !*cur_name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no current name specified") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no current name specified") if(!new_name || !*new_name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no new name specified") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no new name specified") /* Set up collective metadata if appropriate */ if(H5CX_set_loc(cur_loc_id) < 0) @@ -393,7 +380,7 @@ H5G__link(hid_t cur_loc_id, const char *cur_name, H5G_link_t type, H5G_loc_t new_loc; /* Information about new link's group */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* Create the appropriate kind of link */ if(type == H5L_TYPE_HARD) { @@ -441,7 +428,7 @@ H5G__link(hid_t cur_loc_id, const char *cur_name, H5G_link_t type, HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "Not a valid link type") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5G__link() */ @@ -531,7 +518,7 @@ H5G__move(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, H5G_loc_t dst_loc, *dst_loc_p; /* Group info for destination location */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* Check arguments */ if(src_loc_id != H5L_SAME_LOC && H5G_loc(src_loc_id, &src_loc) < 0) @@ -553,10 +540,10 @@ H5G__move(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, /* Move the link */ if(H5L_move(src_loc_p, src_name, dst_loc_p, dst_name, FALSE, lcpl_id) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTMOVE, FAIL, "unable to move link") + HGOTO_ERROR(H5E_SYM, H5E_CANTMOVE, FAIL, "unable to move link") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5G__move() */ @@ -578,16 +565,16 @@ H5Gunlink(hid_t loc_id, const char *name) /* Check arguments */ if(H5G_loc(loc_id, &loc) < 0) - HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "not a location") + HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "not a location") if(!name || !*name) - HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "no name") + HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "no name") /* Set up collective metadata if appropriate */ if(H5CX_set_loc(loc_id) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTSET, FAIL, "can't set collective metadata read info") - /* Call internal routine */ - if(H5G__unlink(&loc, name) < 0) + /* Call H5L routine... */ + if(H5L_delete(&loc, name) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "couldn't delete link") done: @@ -596,37 +583,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5G__unlink - * - * Purpose: Internal version of H5Gunlink. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * Saturday, December 23, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5G__unlink(H5G_loc_t *loc, const char *name) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Call H5L routine... */ - if(H5L_delete(loc, name) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "couldn't delete link") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5G__unlink() */ - - -/*------------------------------------------------------------------------- * Function: H5Gget_linkval * * Purpose: Retrieve's a soft link's data. The new API is @@ -645,53 +601,21 @@ H5Gget_linkval(hid_t loc_id, const char *name, size_t size, char *buf/*out*/) /* Check arguments */ if(H5G_loc(loc_id, &loc)) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if(!name || !*name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") /* Set up collective metadata if appropriate */ if(H5CX_set_loc(loc_id) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTSET, FAIL, "can't set collective metadata read info") - /* Call internal routine */ - if(H5G__get_linkval(&loc, name, size, buf) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "couldn't delete link") - -done: - FUNC_LEAVE_API(ret_value) -} /* end H5Gget_linkval() */ - - -/*------------------------------------------------------------------------- - * Function: H5G__get_linkval - * - * Purpose: Internal version of H5Gget_linkval. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * Saturday, December 23, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5G__get_linkval(const H5G_loc_t *loc, const char *name, size_t size, - char *buf/*out*/) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - /* Call the link routine which provides this capability */ - if(H5L_get_val(loc, name, buf, size) < 0) + if(H5L_get_val(&loc, name, buf, size) < 0) HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "couldn't get link info") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5G__get_linkval() */ + FUNC_LEAVE_API(ret_value) +} /* end H5Gget_linkval() */ /*------------------------------------------------------------------------- @@ -721,17 +645,17 @@ H5Gset_comment(hid_t loc_id, const char *name, const char *comment) H5TRACE3("e", "i*s*s", loc_id, name, comment); if(H5G_loc(loc_id, &loc) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if(!name || !*name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") /* Set up collective metadata if appropriate */ if(H5CX_set_loc(loc_id) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTSET, FAIL, "can't set collective metadata read info") - /* Call internal routine */ - if(H5G__set_comment(&loc, name, comment) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTSET, FAIL, "unable to set comment value") + /* Call the common routine which provides this capability */ + if(H5G_loc_set_comment(&loc, name, comment) < 0) + HGOTO_ERROR(H5E_SYM, H5E_CANTSET, FAIL, "unable to set comment value") done: FUNC_LEAVE_API(ret_value) @@ -739,37 +663,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5G__set_comment - * - * Purpose: Internal version of H5Gset_comment. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * Saturday, December 23, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5G__set_comment(const H5G_loc_t *loc, const char *name, const char *comment) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Call the common routine which provides this capability */ - if(H5G_loc_set_comment(loc, name, comment) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTSET, FAIL, "unable to set comment value") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5G__set_comment() */ - - -/*------------------------------------------------------------------------- * Function: H5Gget_comment * * Purpose: Return at most BUFSIZE characters of the comment for the @@ -802,19 +695,19 @@ H5Gget_comment(hid_t loc_id, const char *name, size_t bufsize, char *buf) H5TRACE4("Is", "i*sz*s", loc_id, name, bufsize, buf); if(H5G_loc(loc_id, &loc) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if(!name || !*name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") if(bufsize > 0 && !buf) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no buffer specified") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no buffer specified") /* Set up collective metadata if appropriate */ if(H5CX_set_loc(loc_id) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTSET, FAIL, "can't set collective metadata read info") - /* Call internal routine */ - if((ret_value = H5G__get_comment(&loc, name, buf, bufsize)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "unable to get comment value") + /* Call the common routine which provides this capability */ + if((ret_value = (int)H5G_loc_get_comment(&loc, name, buf, bufsize)) < 0) + HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "unable to get comment value") done: FUNC_LEAVE_API(ret_value) @@ -822,38 +715,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5G__get_comment - * - * Purpose: Internal version of H5Gget_comment. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * Saturday, December 23, 2017 - * - *------------------------------------------------------------------------- - */ -static int -H5G__get_comment(const H5G_loc_t *loc, const char *name, char *buf, - size_t bufsize) -{ - int ret_value = FAIL; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Call the common routine which provides this capability */ - if((ret_value = (int)H5G_loc_get_comment(loc, name, buf, bufsize)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "unable to get comment value") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5G__get_comment() */ - - -/*------------------------------------------------------------------------- * Function: H5Giterate * * Purpose: Iterates over the entries of a group. The LOC_ID and NAME @@ -905,8 +766,8 @@ H5Giterate(hid_t loc_id, const char *name, int *idx_p, H5G_iterate_t op, lnk_op.op_type = H5G_LINK_OP_OLD; lnk_op.op_func.op_old = op; - /* Call private function. */ - if((ret_value = H5G__iterate(loc_id, name, H5_INDEX_NAME, H5_ITER_INC, idx, &last_obj, &lnk_op, op_data)) < 0) + /* Call the common routine which provides this capability */ + if((ret_value = H5G_iterate(loc_id, name, H5_INDEX_NAME, H5_ITER_INC, idx, &last_obj, &lnk_op, op_data)) < 0) HGOTO_ERROR(H5E_SYM, H5E_BADITER, FAIL, "group iteration failed") /* Set the index we stopped at */ @@ -919,39 +780,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5G__iterate - * - * Purpose: Internal version of H5Giterate. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * Saturday, December 23, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5G__iterate(hid_t loc_id, const char *name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t idx, hsize_t *last_lnk, - const H5G_link_iterate_t *lnk_op, void *op_data) -{ - herr_t ret_value = FAIL; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Call the common routine which provides this capability */ - if((ret_value = H5G_iterate(loc_id, name, idx_type, order, idx, last_lnk, lnk_op, op_data)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_BADITER, FAIL, "group iteration failed") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5G__iterate() */ - - -/*------------------------------------------------------------------------- * Function: H5Gget_num_objs * * Purpose: Returns the number of objects in the group. It iterates @@ -970,22 +798,27 @@ done: herr_t H5Gget_num_objs(hid_t loc_id, hsize_t *num_objs) { - H5G_loc_t loc; /* Location of object */ - H5G_info_t grp_info; /* Group information */ - herr_t ret_value = SUCCEED; + H5G_loc_t loc; /* Location of object */ + H5G_info_t grp_info; /* Group information */ + H5O_type_t obj_type; /* Type of object at location */ + herr_t ret_value = SUCCEED; FUNC_ENTER_API(FAIL) H5TRACE2("e", "i*h", loc_id, num_objs); /* Check args */ if(H5G_loc(loc_id, &loc) < 0) - HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "not a location ID") + HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "not a location ID") + if(H5O_obj_type(loc.oloc, &obj_type) < 0) + HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't get object type") + if(obj_type != H5O_TYPE_GROUP) + HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "not a group") if(!num_objs) - HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "bad pointer to # of objects") + HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "bad pointer to # of objects") - /* Call the internal routine */ - if(H5G__get_num_objs(loc.oloc, &grp_info) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTCOUNT, FAIL, "can't determine") + /* Retrieve information about the group */ + if(H5G__obj_info(loc.oloc, &grp_info) < 0) + HGOTO_ERROR(H5E_SYM, H5E_CANTCOUNT, FAIL, "can't determine # of objects") /* Set the number of objects [sic: links] in the group */ *num_objs = grp_info.nlinks; @@ -996,44 +829,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5G__get_num_objs - * - * Purpose: Internal version of H5Gget_num_objs. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * Saturday, December 23, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5G__get_num_objs(const H5O_loc_t *oloc, H5G_info_t *grp_info) -{ - H5O_type_t obj_type; /* Type of object at location */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Check args */ - if(H5O_obj_type(oloc, &obj_type) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't get object type") - if(obj_type != H5O_TYPE_GROUP) - HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "not a group") - - /* Retrieve information about the group */ - if(H5G__obj_info(oloc, grp_info) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTCOUNT, FAIL, "can't determine # of objects") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5G__get_num_objs() */ - - -/*------------------------------------------------------------------------- * Function: H5Gget_objinfo * * Purpose: Returns information about an object. If FOLLOW_LINK is @@ -1062,13 +857,13 @@ H5Gget_objinfo(hid_t loc_id, const char *name, hbool_t follow_link, /* Check arguments */ if(H5G_loc(loc_id, &loc) < 0) - HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "not a location") + HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "not a location") if(!name || !*name) - HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "no name specified") + HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "no name specified") /* Get info */ if(H5G__get_objinfo(&loc, name, follow_link, statbuf) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "cannot stat object") + HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "cannot stat object") done: FUNC_LEAVE_API(ret_value) @@ -1177,7 +972,7 @@ H5G__get_objinfo(const H5G_loc_t *loc, const char *name, hbool_t follow_link, H5G_trav_goi_t udata; /* User data for callback */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* Sanity checks */ HDassert(loc); @@ -1220,7 +1015,7 @@ H5G__get_objinfo(const H5G_loc_t *loc, const char *name, hbool_t follow_link, } /* end if */ done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5G__get_objinfo() */ @@ -1250,62 +1045,28 @@ done: ssize_t H5Gget_objname_by_idx(hid_t loc_id, hsize_t idx, char *name, size_t size) { - H5G_loc_t loc; /* Object location */ - ssize_t ret_value; + H5G_loc_t loc; /* Object location */ + H5O_type_t obj_type; /* Type of object at location */ + ssize_t ret_value; FUNC_ENTER_API(FAIL) H5TRACE4("Zs", "ih*sz", loc_id, idx, name, size); /* Check args */ if(H5G_loc(loc_id, &loc) < 0) - HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "not a location ID") - - /* Call internal function */ - if((ret_value = H5G__get_objname_by_idx(loc.oloc, H5_INDEX_NAME, H5_ITER_INC, idx, name, size)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "can't get object name") - -done: - FUNC_LEAVE_API(ret_value) -} /* end H5Gget_objname_by_idx() */ - - -/*------------------------------------------------------------------------- - * Function: H5G__get_objname_by_idx - * - * Purpose: Internal version of H5Gget_objname_by_idx. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * Saturday, December 23, 2017 - * - *------------------------------------------------------------------------- - */ -static ssize_t -H5G__get_objname_by_idx(const H5O_loc_t *oloc, H5_index_t idx_type, - H5_iter_order_t order, hsize_t idx, char *name, size_t size) -{ - H5O_type_t obj_type; /* Type of object at location */ - ssize_t ret_value = FAIL; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Check args */ - if(H5O_obj_type(oloc, &obj_type) < 0) + HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "not a location ID") + if(H5O_obj_type(loc.oloc, &obj_type) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't get object type") if(obj_type != H5O_TYPE_GROUP) HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "not a group") /* Call common routine */ - if((ret_value = H5G_obj_get_name_by_idx(oloc, idx_type, order, idx, name, size)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't get object name") + if((ret_value = H5G_obj_get_name_by_idx(loc.oloc, H5_INDEX_NAME, H5_ITER_INC, idx, name, size)) < 0) + HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't get object name") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5G__get_objname_by_idx() */ + FUNC_LEAVE_API(ret_value) +} /* end H5Gget_objname_by_idx() */ /*------------------------------------------------------------------------- @@ -1334,11 +1095,11 @@ H5Gget_objtype_by_idx(hid_t loc_id, hsize_t idx) /* Check args */ if(H5G_loc(loc_id, &loc) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5G_UNKNOWN, "not a location ID") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5G_UNKNOWN, "not a location ID") /* Call internal function*/ if(H5G_UNKNOWN == (ret_value = H5G__obj_get_type_by_idx(loc.oloc, idx))) - HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, H5G_UNKNOWN, "can't get object type") + HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, H5G_UNKNOWN, "can't get object type") done: FUNC_LEAVE_API(ret_value) @@ -1368,7 +1129,7 @@ H5G__obj_get_type_by_idx(H5O_loc_t *oloc, hsize_t idx) H5O_type_t obj_type; /* Type of object at location */ H5G_obj_t ret_value = H5G_UNKNOWN; /* Return value */ - FUNC_ENTER_STATIC_VOL_TAG(oloc->addr) + FUNC_ENTER_STATIC_TAG(oloc->addr) /* Sanity check */ HDassert(oloc); @@ -1401,7 +1162,7 @@ H5G__obj_get_type_by_idx(H5O_loc_t *oloc, hsize_t idx) } /* end else */ done: - FUNC_LEAVE_NOAPI_VOL_TAG(ret_value) + FUNC_LEAVE_NOAPI_TAG(ret_value) } /* end H5G__obj_get_type_by_idx() */ #endif /* H5_NO_DEPRECATED_SYMBOLS */ diff --git a/src/H5Gint.c b/src/H5Gint.c index 3b5de44..8fd7514 100644 --- a/src/H5Gint.c +++ b/src/H5Gint.c @@ -134,7 +134,7 @@ H5G__create_named(const H5G_loc_t *loc, const char *name, hid_t lcpl_id, H5G_obj_create_t gcrt_info; /* Information for group creation */ H5G_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check arguments */ HDassert(loc); @@ -161,48 +161,11 @@ H5G__create_named(const H5G_loc_t *loc, const char *name, hid_t lcpl_id, ret_value = (H5G_t *)ocrt_info.new_obj; done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5G__create_named() */ /*------------------------------------------------------------------------- - * Function: H5G__create_anon - * - * Purpose: Internal routine to create a new anonymous group. - * - * Note: This routine is needed so that there's a non-API routine for - * creating groups that can set up VOL / SWMR info - * (which need a DXPL). - * - * Return: Success: Non-NULL, pointer to new group object. - * Failure: NULL - * - * Programmer: Quincey Koziol - * December 17, 2017 - * - *------------------------------------------------------------------------- - */ -H5G_t * -H5G__create_anon(H5F_t *file, H5G_obj_create_t *gcrt_info) -{ - H5G_t *ret_value = NULL; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check arguments */ - HDassert(file); - HDassert(gcrt_info); - - /* Create the new group & get its ID */ - if(NULL == (ret_value = H5G__create(file, gcrt_info))) - HGOTO_ERROR(H5E_SYM, H5E_CANTCREATE, NULL, "unable to create group") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5G__create_anon() */ - - -/*------------------------------------------------------------------------- * Function: H5G__create * * Purpose: Creates a new empty group with the specified name. The name @@ -302,7 +265,7 @@ H5G__open_name(const H5G_loc_t *loc, const char *name) H5O_type_t obj_type; /* Type of object at location */ H5G_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check args */ HDassert(loc); @@ -336,7 +299,7 @@ done: if(loc_found && H5G_loc_free(&grp_loc) < 0) HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, NULL, "can't free location") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5G__open_name() */ @@ -502,7 +465,7 @@ H5G__close_cb(H5G_t *grp) { herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check args */ HDassert(grp && grp->shared); @@ -513,7 +476,7 @@ H5G__close_cb(H5G_t *grp) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEOBJ, FAIL, "problem closing group") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5G__close_cb() */ @@ -1239,44 +1202,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5G__get_create_plist - * - * Purpose: Internal routine to retrieve a group's creation property list. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: ID for a copy of the group creation property - * list. The property list ID should be released - * by calling H5Pclose(). - * - * Failure: H5I_INVALID_HID - * - * Programmer: Quincey Koziol - * December 17, 2017 - * - *------------------------------------------------------------------------- - */ -hid_t -H5G__get_create_plist(const H5G_t *grp) -{ - hid_t ret_value = H5I_INVALID_HID; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check arguments */ - HDassert(grp); - - /* Retrieve the GCPL */ - if((ret_value = H5G_get_create_plist(grp)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5I_INVALID_HID, "can't get group's creation property list") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5G__get_create_plist() */ - - -/*------------------------------------------------------------------------- * Function: H5G_get_create_plist * * Purpose: Private function for H5Gget_create_plist @@ -1372,51 +1297,11 @@ done: /*------------------------------------------------------------------------- - * Function: H5G__get_info - * - * Purpose: Internal routine to retrieve the info for a group. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 18, 2017 - * - *------------------------------------------------------------------------- - */ -herr_t -H5G__get_info(const H5G_loc_t *loc, H5G_info_t *grp_info) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check arguments */ - HDassert(loc); - HDassert(grp_info); - - /* Retrieve the group's information */ - if(H5G__obj_info(loc->oloc, grp_info) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't retrieve group info") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5G__get_info() */ - - -/*------------------------------------------------------------------------- * Function: H5G__get_info_by_name * * Purpose: Internal routine to retrieve the info for a group, by name. * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * December 18, 2017 @@ -1432,7 +1317,7 @@ H5G__get_info_by_name(const H5G_loc_t *loc, const char *name, H5G_info_t *grp_in hbool_t loc_found = FALSE; /* Location at 'name' found */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check arguments */ HDassert(loc); @@ -1457,7 +1342,7 @@ done: if(loc_found && H5G_loc_free(&grp_loc) < 0) HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5G__get_info_by_name() */ @@ -1466,11 +1351,7 @@ done: * * Purpose: Internal routine to retrieve the info for a group, by index. * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * December 18, 2017 @@ -1487,7 +1368,7 @@ H5G__get_info_by_idx(const H5G_loc_t *loc, const char *group_name, hbool_t loc_found = FALSE; /* Location at 'name' found */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check arguments */ HDassert(loc); @@ -1512,76 +1393,6 @@ done: if(loc_found && H5G_loc_free(&grp_loc) < 0) HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5G__get_info_by_idx() */ - -/*------------------------------------------------------------------------- - * Function: H5G__flush - * - * Purpose: Internal routine to flushes a group to disk. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 18, 2017 - * - *------------------------------------------------------------------------- - */ -herr_t -H5G__flush(H5G_t *grp, hid_t group_id) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Sanity check */ - HDassert(grp); - - /* Flush metadata to file */ - if(H5O_flush_common(&grp->oloc, group_id) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTFLUSH, FAIL, "unable to flush group and object flush callback") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* H5G__flush */ - - -/*------------------------------------------------------------------------- - * Function: H5G__refresh - * - * Purpose: Internal routine to refresh a group. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 18, 2017 - * - *------------------------------------------------------------------------- - */ -herr_t -H5G__refresh(H5G_t *grp, hid_t group_id) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Sanity check */ - HDassert(grp); - - /* Call private function to refresh group object */ - if((H5O_refresh_metadata(group_id, grp->oloc)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTLOAD, FAIL, "unable to refresh group") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* H5G__refresh */ - diff --git a/src/H5Gpkg.h b/src/H5Gpkg.h index f0a9aea..b89777d 100644 --- a/src/H5Gpkg.h +++ b/src/H5Gpkg.h @@ -331,16 +331,11 @@ H5FL_EXTERN(H5G_shared_t); H5_DLL H5G_t *H5G__create(H5F_t *file, H5G_obj_create_t *gcrt_info); H5_DLL H5G_t *H5G__create_named(const H5G_loc_t *loc, const char *name, hid_t lcpl_id, hid_t gcpl_id); -H5_DLL H5G_t *H5G__create_anon(H5F_t *file, H5G_obj_create_t *gcrt_info); H5_DLL H5G_t *H5G__open_name(const H5G_loc_t *loc, const char *name); -H5_DLL hid_t H5G__get_create_plist(const H5G_t *grp); -H5_DLL herr_t H5G__get_info(const H5G_loc_t *loc, H5G_info_t *grp_info); H5_DLL herr_t H5G__get_info_by_name(const H5G_loc_t *loc, const char *name, H5G_info_t *grp_info); H5_DLL herr_t H5G__get_info_by_idx(const H5G_loc_t *loc, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5G_info_t *grp_info); -H5_DLL herr_t H5G__flush(H5G_t *grp, hid_t group_id); -H5_DLL herr_t H5G__refresh(H5G_t *grp, hid_t group_id); H5_DLL herr_t H5G__close_cb(H5G_t *grp); /* diff --git a/src/H5HFprivate.h b/src/H5HFprivate.h index 5086afb..6bd4e46 100644 --- a/src/H5HFprivate.h +++ b/src/H5HFprivate.h @@ -25,9 +25,6 @@ #ifndef _H5HFprivate_H #define _H5HFprivate_H -/* Include package's public header */ -#include "H5HFpublic.h" - /* Private headers needed by this file */ #include "H5Fprivate.h" /* File access */ #include "H5Oprivate.h" /* Object headers */ diff --git a/src/H5HFpublic.h b/src/H5HFpublic.h deleted file mode 100644 index 82cfc21..0000000 --- a/src/H5HFpublic.h +++ /dev/null @@ -1,52 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * - * If you do not have access to either file, you may request a copy from * - * help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/*------------------------------------------------------------------------- - * - * Created: H5HFpublic.h - * Feb 24 2006 - * Quincey Koziol <koziol@ncsa.uiuc.edu> - * - * Purpose: Public declarations for the fractal heap package. - * - *------------------------------------------------------------------------- - */ - -#ifndef _H5HFpublic_H -#define _H5HFpublic_H - -/* Public headers needed by this file */ -#include "H5public.h" - -/*****************/ -/* Public Macros */ -/*****************/ - -/*******************/ -/* Public Typedefs */ -/*******************/ - -/**********************************/ -/* Public API Function Prototypes */ -/**********************************/ - -#ifdef __cplusplus -extern "C" { -#endif - -#ifdef __cplusplus -} -#endif - -#endif /* _H5HFpublic_H */ - @@ -785,7 +785,13 @@ H5HG_remove (H5F_t *f, H5HG_t *hobj) HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect global heap") HDassert(hobj->idx < heap->nused); - HDassert(heap->obj[hobj->idx].begin); + /* When the application selects the same location to rewrite the VL element by using H5Sselect_elements, + * it can happen that the entry has been removed by first rewrite. Here we simply skip the removal of + * the entry and let the second rewrite happen (see HDFFV-10635). In the future, it'd be nice to handle + * this situation in H5T_conv_vlen in H5Tconv.c instead of this level (HDFFV-10648). */ + if(heap->obj[hobj->idx].nrefs == 0 && heap->obj[hobj->idx].size == 0 && !heap->obj[hobj->idx].begin) + HGOTO_DONE(ret_value) + obj_start = heap->obj[hobj->idx].begin; /* Include object header size */ need = H5HG_ALIGN(heap->obj[hobj->idx].size) + H5HG_SIZEOF_OBJHDR(f); diff --git a/src/H5HGprivate.h b/src/H5HGprivate.h index a7d7a80..1c609e2 100644 --- a/src/H5HGprivate.h +++ b/src/H5HGprivate.h @@ -18,9 +18,6 @@ #ifndef _H5HGprivate_H #define _H5HGprivate_H -/* Include package's public header */ -#include "H5HGpublic.h" - /* Private headers needed by this file. */ #include "H5Fprivate.h" /* File access */ diff --git a/src/H5HGpublic.h b/src/H5HGpublic.h deleted file mode 100644 index fcec593..0000000 --- a/src/H5HGpublic.h +++ /dev/null @@ -1,31 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * - * If you do not have access to either file, you may request a copy from * - * help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/* - * Programmer: Robb Matzke <matzke@llnl.gov> - * Friday, March 27, 1998 - */ -#ifndef _H5HGpublic_H -#define _H5HGpublic_H - -/* Public headers needed by this file */ -#include "H5public.h" - -#ifdef __cplusplus -extern "C" { -#endif - -#ifdef __cplusplus -} -#endif -#endif diff --git a/src/H5HLprivate.h b/src/H5HLprivate.h index 4001ef1..7a53b25 100644 --- a/src/H5HLprivate.h +++ b/src/H5HLprivate.h @@ -24,9 +24,6 @@ #ifndef _H5HLprivate_H #define _H5HLprivate_H -/* Include package's public header */ -#include "H5HLpublic.h" - /* Private headers needed by this file. */ #include "H5private.h" /* Generic Functions */ #include "H5ACprivate.h" /* Metadata cache */ diff --git a/src/H5HLpublic.h b/src/H5HLpublic.h deleted file mode 100644 index 143bb78..0000000 --- a/src/H5HLpublic.h +++ /dev/null @@ -1,37 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * - * If you do not have access to either file, you may request a copy from * - * help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/*------------------------------------------------------------------------- - * - * Created: H5HLpublic.h - * Jul 16 1997 - * Robb Matzke <matzke@llnl.gov> - * - * Purpose: Public declarations for the H5HL (local heap) package. - * - *------------------------------------------------------------------------- - */ -#ifndef _H5HLpublic_H -#define _H5HLpublic_H - -/* Public headers needed by this file */ -#include "H5public.h" - -#ifdef __cplusplus -extern "C" { -#endif - -#ifdef __cplusplus -} -#endif -#endif @@ -26,28 +26,22 @@ */ #include "H5Imodule.h" /* This source code file is part of the H5I module */ +#define H5T_FRIEND /* Suppress error about including H5Tpkg */ #include "H5private.h" /* Generic Functions */ #include "H5ACprivate.h" /* Metadata cache */ #include "H5CXprivate.h" /* API Contexts */ +#include "H5Dprivate.h" /* Datasets */ #include "H5Eprivate.h" /* Error handling */ #include "H5FLprivate.h" /* Free Lists */ +#include "H5Gprivate.h" /* Groups */ #include "H5Ipkg.h" /* IDs */ #include "H5MMprivate.h" /* Memory management */ #include "H5Oprivate.h" /* Object headers */ #include "H5SLprivate.h" /* Skip Lists */ +#include "H5Tpkg.h" /* Datatypes */ -/* Define this to compile in support for dumping ID information */ -/* #define H5I_DEBUG_OUTPUT */ -#ifndef H5I_DEBUG_OUTPUT -#include "H5Gprivate.h" /* Groups */ -#else /* H5I_DEBUG_OUTPUT */ -#define H5G_FRIEND /* Suppress error about including H5Gpkg */ -#include "H5Gpkg.h" /* Groups */ -#include "H5Dprivate.h" /* Datasets */ -#include "H5Tprivate.h" /* Datatypes */ -#endif /* H5I_DEBUG_OUTPUT */ /* Local Macros */ @@ -128,11 +122,8 @@ static int H5I__inc_type_ref(H5I_type_t type); static int H5I__get_type_ref(H5I_type_t type); static int H5I__search_cb(void *obj, hid_t id, void *_udata); static H5I_id_info_t *H5I__find_id(hid_t id); -static ssize_t H5I__get_name(const H5G_loc_t *loc, char *name, size_t size); -#ifdef H5I_DEBUG_OUTPUT static int H5I__debug_cb(void *_item, void *_key, void *_udata); -static herr_t H5I__debug(H5I_type_t type); -#endif /* H5I_DEBUG_OUTPUT */ +static int H5I__id_dump_cb(void *_item, void *_key, void *_udata); /*------------------------------------------------------------------------- @@ -2021,8 +2012,8 @@ H5Iget_name(hid_t id, char *name/*out*/, size_t size) if(H5G_loc(id, &loc) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, (-1), "can't retrieve object location") - /* Call internal routine to retrieve object's name */ - if((ret_value = H5I__get_name(&loc, name, size)) < 0) + /* Retrieve object's name */ + if((ret_value = H5G_get_name(&loc, name, size, NULL)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, (-1), "can't retrieve object name") done: @@ -2031,41 +2022,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5I__get_name - * - * Purpose: Internal routine to retrieve the name for an object - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: The length of the name - * Failure: -1 - * - * Programmer: Quincey Koziol - * January 9, 2018 - * - *------------------------------------------------------------------------- - */ -static ssize_t -H5I__get_name(const H5G_loc_t *loc, char *name, size_t size) -{ - ssize_t ret_value = -1; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Check arguments */ - HDassert(loc); - - /* Retrieve object's name */ - if((ret_value = H5G_get_name(loc, name, size, NULL)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, (-1), "can't retrieve object name") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5I__get_name() */ - - -/*------------------------------------------------------------------------- * Function: H5Iget_file_id * * Purpose: The public version of H5I_get_file_id(), obtains the file @@ -2145,10 +2101,9 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5I_get_file_id() */ -#ifdef H5I_DEBUG_OUTPUT /*------------------------------------------------------------------------- - * Function: H5I__debug_cb + * Function: H5I__id_dump_cb * * Purpose: Dump the contents of an ID to stderr for debugging. * @@ -2157,7 +2112,7 @@ done: *------------------------------------------------------------------------- */ static int -H5I__debug_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) +H5I__id_dump_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) { H5I_id_info_t *item = (H5I_id_info_t *)_item; /* Pointer to the ID node */ H5I_type_t type = *(H5I_type_t *)_udata; /* User data */ @@ -2170,7 +2125,7 @@ H5I__debug_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) HDfprintf(stderr, " obj = 0x%08lx\n", (unsigned long)(item->obj_ptr)); /* Get the group location, so we get get the name */ - switch (type) { + switch(type) { case H5I_GROUP: { path = H5G_nameof((H5G_t*)item->obj_ptr); @@ -2201,9 +2156,9 @@ H5I__debug_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) case H5I_NTYPES: default: break; /* Other types of IDs are not stored in files */ - } + } /* end switch */ - if (path) { + if(path) { if (path->user_path_r) HDfprintf(stderr, " user_path = %s\n", H5RS_get_str(path->user_path_r)); if (path->full_path_r) @@ -2211,11 +2166,11 @@ H5I__debug_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) } FUNC_LEAVE_NOAPI(H5_ITER_CONT) -} /* end H5I__debug_cb() */ +} /* end H5I__id_dump_cb() */ /*------------------------------------------------------------------------- - * Function: H5I__debug + * Function: H5I_dump_ids_for_type * * Purpose: Dump the contents of a type to stderr for debugging. * @@ -2223,27 +2178,33 @@ H5I__debug_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) * *------------------------------------------------------------------------- */ -static herr_t -H5I__debug(H5I_type_t type) +herr_t +H5I_dump_ids_for_type(H5I_type_t type) { - H5I_id_type_t *type_ptr; + H5I_id_type_t *type_ptr = NULL; - FUNC_ENTER_STATIC_NOERR + FUNC_ENTER_NOAPI_NOERR HDfprintf(stderr, "Dumping ID type %d\n", (int)type); type_ptr = H5I_id_type_list_g[type]; - /* Header */ - HDfprintf(stderr, " init_count = %u\n", type_ptr->init_count); - HDfprintf(stderr, " reserved = %u\n", type_ptr->cls->reserved); - HDfprintf(stderr, " id_count = %llu\n", (unsigned long long)type_ptr->id_count); - HDfprintf(stderr, " nextid = %llu\n", (unsigned long long)type_ptr->nextid); + if(type_ptr) { - /* List */ - HDfprintf(stderr, " List:\n"); - H5SL_iterate(type_ptr->ids, H5I__debug_cb, &type); + /* Header */ + HDfprintf(stderr, " init_count = %u\n", type_ptr->init_count); + HDfprintf(stderr, " reserved = %u\n", type_ptr->cls->reserved); + HDfprintf(stderr, " id_count = %llu\n", (unsigned long long)type_ptr->id_count); + HDfprintf(stderr, " nextid = %llu\n", (unsigned long long)type_ptr->nextid); + + /* List */ + if(type_ptr->id_count > 0) { + HDfprintf(stderr, " List:\n"); + H5SL_iterate(type_ptr->ids, H5I__id_dump_cb, &type); + } + } + else + HDfprintf(stderr, "Global type info/tracking pointer for that type is NULL\n"); FUNC_LEAVE_NOAPI(SUCCEED) -} /* end H5I__debug() */ -#endif /* H5I_DEBUG_OUTPUT */ +} /* end H5I_dump_ids_for_type() */ diff --git a/src/H5Iprivate.h b/src/H5Iprivate.h index 3bfde93..25a0572 100644 --- a/src/H5Iprivate.h +++ b/src/H5Iprivate.h @@ -82,5 +82,8 @@ H5_DLL int H5I_dec_app_ref(hid_t id); H5_DLL int H5I_dec_app_ref_always_close(hid_t id); H5_DLL int H5I_dec_type_ref(H5I_type_t type); +/* Debugging functions */ +H5_DLL herr_t H5I_dump_ids_for_type(H5I_type_t type); + #endif /* _H5Iprivate_H */ @@ -102,16 +102,10 @@ static herr_t H5L__link_cb(H5G_loc_t *grp_loc/*in*/, const char *name, static herr_t H5L__create_real(const H5G_loc_t *link_loc, const char *link_name, H5G_name_t *obj_path, H5F_t *obj_file, H5O_link_t *lnk, H5O_obj_create_t *ocrt_info, hid_t lcpl_id); -static herr_t H5L__create_hard(H5G_loc_t *cur_loc, const char *cur_name, - const H5G_loc_t *link_loc, const char *link_name, hid_t lcpl_id); -static herr_t H5L__create_soft(const char *target_path, const H5G_loc_t *link_loc, - const char *link_name, hid_t lcpl_id); static herr_t H5L__get_val_real(const H5O_link_t *lnk, void *buf, size_t size); static herr_t H5L__get_val_cb(H5G_loc_t *grp_loc/*in*/, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/); -static herr_t H5L__get_val(const H5G_loc_t *loc, const char *name, - void *buf/*out*/, size_t size); static herr_t H5L__get_val_by_idx_cb(H5G_loc_t *grp_loc/*in*/, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/); @@ -121,7 +115,6 @@ static herr_t H5L__get_val_by_idx(const H5G_loc_t *loc, const char *name, static herr_t H5L__delete_cb(H5G_loc_t *grp_loc/*in*/, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/); -static herr_t H5L__delete(const H5G_loc_t *loc, const char *name); static herr_t H5L__delete_by_idx_cb(H5G_loc_t *grp_loc/*in*/, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/); @@ -133,8 +126,6 @@ static herr_t H5L__move_cb(H5G_loc_t *grp_loc/*in*/, const char *name, static herr_t H5L__move_dest_cb(H5G_loc_t *grp_loc/*in*/, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/); -static herr_t H5L__move(const H5G_loc_t *src_loc, const char *src_name, - H5G_loc_t *dst_loc, const char *dst_name, hbool_t copy_flag, hid_t lcpl_id); static herr_t H5L__exists_final_cb(H5G_loc_t *grp_loc/*in*/, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/); @@ -145,8 +136,6 @@ static htri_t H5L__exists(const H5G_loc_t *loc, const char *name); static herr_t H5L__get_info_cb(H5G_loc_t *grp_loc/*in*/, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/); -static herr_t H5L__get_info(const H5G_loc_t *loc, const char *name, - H5L_info_t *linfo/*out*/); static herr_t H5L__get_info_by_idx_cb(H5G_loc_t *grp_loc/*in*/, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/); @@ -162,10 +151,6 @@ static ssize_t H5L__get_name_by_idx(const H5G_loc_t *loc, const char *group_name static herr_t H5L__iterate(hid_t grp_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx_p, H5L_iterate_t op, void *op_data); -static herr_t H5L__visit(hid_t grp_id, const char *group_name, - H5_index_t idx_type, H5_iter_order_t order, H5L_iterate_t op, - void *op_data); - /*********************/ /* Package Variables */ @@ -338,8 +323,8 @@ H5Lmove(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, dst_loc_p = src_loc_p; /* Move the link */ - if(H5L__move(src_loc_p, src_name, dst_loc_p, dst_name, FALSE, lcpl_id) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTMOVE, FAIL, "unable to move link") + if(H5L_move(src_loc_p, src_name, dst_loc_p, dst_name, FALSE, lcpl_id) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTMOVE, FAIL, "unable to move link") done: FUNC_LEAVE_API(ret_value) @@ -400,8 +385,8 @@ H5Lcopy(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, dst_loc_p = src_loc_p; /* Copy the link */ - if(H5L__move(src_loc_p, src_name, dst_loc_p, dst_name, TRUE, lcpl_id) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTMOVE, FAIL, "unable to move link") + if(H5L_move(src_loc_p, src_name, dst_loc_p, dst_name, TRUE, lcpl_id) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTMOVE, FAIL, "unable to move link") done: FUNC_LEAVE_API(ret_value) @@ -451,8 +436,8 @@ H5Lcreate_soft(const char *link_target, hid_t link_loc_id, HGOTO_ERROR(H5E_LINK, H5E_CANTSET, FAIL, "can't set access property list info") /* Create the link */ - if(H5L__create_soft(link_target, &link_loc, link_name, lcpl_id) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTCREATE, FAIL, "unable to create link") + if(H5L_create_soft(link_target, &link_loc, link_name, lcpl_id) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTCREATE, FAIL, "unable to create link") done: FUNC_LEAVE_API(ret_value) @@ -516,8 +501,8 @@ H5Lcreate_hard(hid_t cur_loc_id, const char *cur_name, HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "source and destination should be in the same file.") /* Create the link */ - if(H5L__create_hard(cur_loc_p, cur_name, new_loc_p, new_name, lcpl_id) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTCREATE, FAIL, "unable to create link") + if(H5L_create_hard(cur_loc_p, cur_name, new_loc_p, new_name, lcpl_id) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTCREATE, FAIL, "unable to create link") done: FUNC_LEAVE_API(ret_value) @@ -617,8 +602,8 @@ H5Ldelete(hid_t loc_id, const char *name, hid_t lapl_id) HGOTO_ERROR(H5E_LINK, H5E_CANTSET, FAIL, "can't set access property list info") /* Unlink */ - if(H5L__delete(&loc, name) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTDELETE, FAIL, "unable to delete link") + if(H5L_delete(&loc, name) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTDELETE, FAIL, "unable to delete link") done: FUNC_LEAVE_API(ret_value) @@ -670,7 +655,7 @@ H5Ldelete_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, /* Delete the link */ if(H5L__delete_by_idx(&loc, group_name, idx_type, order, n) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTDELETE, FAIL, "unable to delete link") + HGOTO_ERROR(H5E_LINK, H5E_CANTDELETE, FAIL, "unable to delete link") done: FUNC_LEAVE_API(ret_value) @@ -717,8 +702,8 @@ H5Lget_val(hid_t loc_id, const char *name, void *buf/*out*/, size_t size, HGOTO_ERROR(H5E_LINK, H5E_CANTSET, FAIL, "can't set access property list info") /* Get the link value */ - if(H5L__get_val(&loc, name, buf, size) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link value for '%s'", name) + if(H5L_get_val(&loc, name, buf, size) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link value for '%s'", name) done: FUNC_LEAVE_API(ret_value) @@ -854,8 +839,8 @@ H5Lget_info(hid_t loc_id, const char *name, H5L_info_t *linfo /*out*/, HGOTO_ERROR(H5E_LINK, H5E_CANTSET, FAIL, "can't set access property list info") /* Get the link information */ - if(H5L__get_info(&loc, name, linfo) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link info") + if(H5L_get_info(&loc, name, linfo) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link info") done: FUNC_LEAVE_API(ret_value) @@ -904,7 +889,7 @@ H5Lget_info_by_idx(hid_t loc_id, const char *group_name, /* Get the link information */ if(H5L__get_info_by_idx(&loc, group_name, idx_type, order, n, linfo) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link info") + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link info") done: FUNC_LEAVE_API(ret_value) @@ -1087,7 +1072,7 @@ H5Lget_name_by_idx(hid_t loc_id, const char *group_name, /* Get the link information */ if((ret_value = H5L__get_name_by_idx(&loc, group_name, idx_type, order, n, name, size)) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link name") + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link name") done: FUNC_LEAVE_API(ret_value) @@ -1135,7 +1120,7 @@ H5Literate(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, /* Iterate over the links */ if((ret_value = H5L__iterate(grp_id, ".", idx_type, order, idx_p, op, op_data)) < 0) - HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link iteration failed") + HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link iteration failed") done: FUNC_LEAVE_API(ret_value) @@ -1191,7 +1176,7 @@ H5Literate_by_name(hid_t loc_id, const char *group_name, /* Iterate over the links */ if((ret_value = H5L__iterate(loc_id, group_name, idx_type, order, idx_p, op, op_data)) < 0) - HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link iteration failed") + HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link iteration failed") done: FUNC_LEAVE_API(ret_value) @@ -1248,8 +1233,8 @@ H5Lvisit(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified") /* Call internal routine */ - if((ret_value = H5L__visit(grp_id, ".", idx_type, order, op, op_data)) < 0) - HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link visitation failed") + if((ret_value = H5G_visit(grp_id, ".", idx_type, order, op, op_data)) < 0) + HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link visitation failed") done: FUNC_LEAVE_API(ret_value) @@ -1309,8 +1294,8 @@ H5Lvisit_by_name(hid_t loc_id, const char *group_name, H5_index_t idx_type, HGOTO_ERROR(H5E_LINK, H5E_CANTSET, FAIL, "can't set access property list info") /* Call internal routine */ - if((ret_value = H5L__visit(loc_id, group_name, idx_type, order, op, op_data)) < 0) - HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link visitation failed") + if((ret_value = H5G_visit(loc_id, group_name, idx_type, order, op, op_data)) < 0) + HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link visitation failed") done: FUNC_LEAVE_API(ret_value) @@ -1895,45 +1880,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5L__create_hard - * - * Purpose: Internal routine to create a hard link - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 25, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5L__create_hard(H5G_loc_t *cur_loc, const char *cur_name, - const H5G_loc_t *link_loc, const char *link_name, hid_t lcpl_id) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Check arguments */ - HDassert(cur_loc); - HDassert(cur_name); - HDassert(link_loc); - HDassert(link_name); - - /* Create the link */ - if(H5L_create_hard(cur_loc, cur_name, link_loc, link_name, lcpl_id) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTCREATE, FAIL, "unable to create link") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5L__create_hard() */ - - -/*------------------------------------------------------------------------- * Function: H5L_create_soft * * Purpose: Creates a soft link from LINK_NAME to TARGET_PATH. @@ -1982,44 +1928,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5L__create_soft - * - * Purpose: Internal routine to create a soft link - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 25, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5L__create_soft(const char *target_path, const H5G_loc_t *link_loc, - const char *link_name, hid_t lcpl_id) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Check arguments */ - HDassert(target_path); - HDassert(link_loc); - HDassert(link_name); - - /* Create the link */ - if(H5L_create_soft(target_path, link_loc, link_name, lcpl_id) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTCREATE, FAIL, "unable to create link") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5L__create_soft() */ - - -/*------------------------------------------------------------------------- * Function: H5L__create_ud * * Purpose: Creates a user-defined link. See H5Lcreate_ud for @@ -2039,7 +1947,7 @@ H5L__create_ud(const H5G_loc_t *link_loc, const char *link_name, H5O_link_t lnk; /* Link to insert */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check args */ HDassert(type >= H5L_TYPE_UD_MIN && type <= H5L_TYPE_MAX); @@ -2073,7 +1981,7 @@ done: /* Free the link's udata buffer if it's been allocated */ H5MM_xfree(lnk.u.ud.udata); - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5L__create_ud() */ @@ -2216,42 +2124,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5L__get_val - * - * Purpose: Internal routine to query a link value - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 27, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5L__get_val(const H5G_loc_t *loc, const char *name, void *buf/*out*/, size_t size) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Check arguments */ - HDassert(loc); - HDassert(name && *name); - - /* Get the link value */ - if(H5L_get_val(loc, name, buf, size) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link value for '%s'", name) - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5L__get_val() */ - - -/*------------------------------------------------------------------------- * Function: H5L__get_val_by_idx_cb * * Purpose: Callback for retrieving a link's value according to an @@ -2308,9 +2180,6 @@ done: * Purpose: Internal routine to query a link value according to the * index within a group * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: Non-negative * Failure: Negative * @@ -2326,7 +2195,7 @@ H5L__get_val_by_idx(const H5G_loc_t *loc, const char *name, H5_index_t idx_type, H5L_trav_gvbi_t udata; /* User data for callback */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* Check arguments */ HDassert(loc); @@ -2344,7 +2213,7 @@ H5L__get_val_by_idx(const H5G_loc_t *loc, const char *name, H5_index_t idx_type, HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "can't get link info for index: %llu", (unsigned long long)n) done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5L__get_val_by_idx() */ @@ -2439,42 +2308,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5L__delete - * - * Purpose: Internal routine to delete a link - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 27, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5L__delete(const H5G_loc_t *loc, const char *name) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Check arguments */ - HDassert(loc); - HDassert(name && *name); - - /* Delete the link */ - if(H5L_delete(loc, name) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTDELETE, FAIL, "unable to delete link: %s", name) - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5L__delete() */ - - -/*------------------------------------------------------------------------- * Function: H5L__delete_by_idx_cb * * Purpose: Callback for removing a link according to an index's order. @@ -2519,9 +2352,6 @@ done: * Purpose: Internal routine to delete a link according to its index * within a group. * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: Non-negative * Failure: Negative * @@ -2537,7 +2367,7 @@ H5L__delete_by_idx(const H5G_loc_t *loc, const char *name, H5_index_t idx_type, H5L_trav_rmbi_t udata; /* User data for callback */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* Check arguments */ HDassert(loc); @@ -2553,8 +2383,8 @@ H5L__delete_by_idx(const H5G_loc_t *loc, const char *name, H5_index_t idx_type, HGOTO_ERROR(H5E_LINK, H5E_CANTDELETE, FAIL, "link doesn't exist") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5L__delete() */ + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5L__delete_by_idx() */ /*------------------------------------------------------------------------- @@ -2864,45 +2694,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5L__move - * - * Purpose: Internal routine to move / copy a link - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 25, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5L__move(const H5G_loc_t *src_loc, const char *src_name, H5G_loc_t *dst_loc, - const char *dst_name, hbool_t copy_flag, hid_t lcpl_id) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Check arguments */ - HDassert(src_loc); - HDassert(src_name); - HDassert(dst_loc); - HDassert(dst_name); - - /* Move the link */ - if(H5L_move(src_loc, src_name, dst_loc, dst_name, copy_flag, lcpl_id) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTMOVE, FAIL, "unable to move link") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5L__move() */ - - -/*------------------------------------------------------------------------- * Function: H5L__exists_final_cb * * Purpose: Callback for checking whether a link exists, as the final @@ -3083,7 +2874,7 @@ H5L__exists(const H5G_loc_t *loc, const char *name) H5L_trav_le_t udata; /* User data for traversal */ htri_t ret_value = FAIL; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* A path of "/" will always exist in a file */ if(0 == HDstrcmp(name, "/")) @@ -3098,7 +2889,7 @@ H5L__exists(const H5G_loc_t *loc, const char *name) ret_value = (htri_t)udata.exists; done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5L__exists() */ @@ -3173,42 +2964,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5L__get_info - * - * Purpose: Internal routine to retrieve link info - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 27, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5L__get_info(const H5G_loc_t *loc, const char *name, H5L_info_t *linfo/*out*/) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Check arguments */ - HDassert(loc); - HDassert(name && *name); - - /* Get the link information */ - if(H5L_get_info(loc, name, linfo) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link info for: '%s'", name) - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5L__get_info() */ - - -/*------------------------------------------------------------------------- * Function: H5L__get_info_by_idx_cb * * Purpose: Callback for retrieving a link's metadata according to an @@ -3265,9 +3020,6 @@ done: * Purpose: Internal routine to retrieve link info according to an * index's order. * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: Non-negative * Failure: Negative * @@ -3283,7 +3035,7 @@ H5L__get_info_by_idx(const H5G_loc_t *loc, const char *name, H5_index_t idx_type H5L_trav_gibi_t udata; /* User data for callback */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* Check arguments */ HDassert(loc); @@ -3298,10 +3050,10 @@ H5L__get_info_by_idx(const H5G_loc_t *loc, const char *name, H5_index_t idx_type /* Traverse the group hierarchy to locate the object to get info about */ if(H5G_traverse(loc, name, H5G_TARGET_SLINK | H5G_TARGET_UDLINK, H5L__get_info_by_idx_cb, &udata) < 0) - HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link info") + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link info") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5L__get_info_by_idx() */ @@ -3351,9 +3103,6 @@ done: * Purpose: Internal routine to retrieve link name according to an * index's order. * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: Non-negative * Failure: Negative * @@ -3370,7 +3119,7 @@ H5L__get_name_by_idx(const H5G_loc_t *loc, const char *group_name, H5L_trav_gnbi_t udata; /* User data for callback */ ssize_t ret_value = FAIL; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* Check arguments */ HDassert(loc); @@ -3392,7 +3141,7 @@ H5L__get_name_by_idx(const H5G_loc_t *loc, const char *group_name, ret_value = udata.name_len; done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5L__get_name_by_idx() */ @@ -3401,9 +3150,6 @@ done: * * Purpose: Internal routine to iterate over links * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: Non-negative * Failure: Negative * @@ -3421,7 +3167,7 @@ H5L__iterate(hid_t grp_id, const char *group_name, H5_index_t idx_type, hsize_t idx; /* Internal location to hold index */ herr_t ret_value = FAIL; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* Check arguments */ HDassert(group_name); @@ -3444,48 +3190,11 @@ H5L__iterate(hid_t grp_id, const char *group_name, H5_index_t idx_type, *idx_p = last_lnk; done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5L__iterate() */ /*------------------------------------------------------------------------- - * Function: H5L__visit - * - * Purpose: Internal routine to visit links - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 28, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5L__visit(hid_t grp_id, const char *group_name, H5_index_t idx_type, - H5_iter_order_t order, H5L_iterate_t op, void *op_data) -{ - herr_t ret_value = FAIL; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Check arguments */ - HDassert(group_name); - HDassert(op); - - /* Call internal group visitation routine */ - if((ret_value = H5G_visit(grp_id, group_name, idx_type, order, op, op_data)) < 0) - HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link visitation failed") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5L__visit() */ - - -/*------------------------------------------------------------------------- * Function: H5L__link_copy_file * * Purpose: Copy a link and the object it points to from one file to @@ -73,11 +73,11 @@ /* Local Variables */ /*******************/ - + /*------------------------------------------------------------------------- - * Function: H5Oopen + * Function: H5Oopen * - * Purpose: Opens an object within an HDF5 file. + * Purpose: Opens an object within an HDF5 file. * * This function opens an object in the same way that H5Gopen2, * H5Topen2, and H5Dopen2 do. However, H5Oopen doesn't require @@ -88,18 +88,18 @@ * The opened object should be closed again with H5Oclose * or H5Gclose, H5Tclose, or H5Dclose. * - * Return: Success: An open object identifier - * Failure: Negative + * Return: Success: An open object identifier + * Failure: Negative * - * Programmer: James Laird - * July 14 2006 + * Programmer: James Laird + * July 14 2006 * *------------------------------------------------------------------------- */ hid_t H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id) { - H5G_loc_t loc; /* Location of group */ + H5G_loc_t loc; /* Location of group */ hid_t ret_value = FAIL; FUNC_ENTER_API(FAIL) @@ -116,18 +116,18 @@ H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, H5I_INVALID_HID, "can't set access property list info") /* Open the object */ - if((ret_value = H5O__open_name(&loc, name)) < 0) + if((ret_value = H5O_open_name(&loc, name, TRUE)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTOPENOBJ, FAIL, "unable to open object") done: FUNC_LEAVE_API(ret_value) } /* end H5Oopen() */ - + /*------------------------------------------------------------------------- - * Function: H5Oopen_by_idx + * Function: H5Oopen_by_idx * - * Purpose: Opens an object within an HDF5 file, according to the offset + * Purpose: Opens an object within an HDF5 file, according to the offset * within an index. * * This function opens an object in the same way that H5Gopen, @@ -139,11 +139,11 @@ done: * The opened object should be closed again with H5Oclose * or H5Gclose, H5Tclose, or H5Dclose. * - * Return: Success: An open object identifier - * Failure: Negative + * Return: Success: An open object identifier + * Failure: Negative * - * Programmer: Quincey Koziol - * November 20 2006 + * Programmer: Quincey Koziol + * November 20 2006 * *------------------------------------------------------------------------- */ @@ -151,7 +151,7 @@ hid_t H5Oopen_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id) { - H5G_loc_t loc; /* Location of group */ + H5G_loc_t loc; /* Location of group */ hid_t ret_value = FAIL; FUNC_ENTER_API(FAIL) @@ -179,11 +179,11 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Oopen_by_idx() */ - + /*------------------------------------------------------------------------- - * Function: H5Oopen_by_addr + * Function: H5Oopen_by_addr * - * Purpose: Warning! This function is EXTREMELY DANGEROUS! + * Purpose: Warning! This function is EXTREMELY DANGEROUS! * Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA, * and other VERY BAD THINGS! * @@ -207,19 +207,19 @@ done: * HDF5 file, and HDF5's file drivers will transparently * map this to an address on disk for the filesystem. * - * Return: Success: An open object identifier - * Failure: Negative + * Return: Success: An open object identifier + * Failure: Negative * - * Programmer: James Laird - * July 14 2006 + * Programmer: James Laird + * July 14 2006 * *------------------------------------------------------------------------- */ hid_t H5Oopen_by_addr(hid_t loc_id, haddr_t addr) { - H5G_loc_t loc; /* Location within file */ - hid_t ret_value = H5I_INVALID_HID; /* Return value */ + H5G_loc_t loc; /* Location within file */ + hid_t ret_value = H5I_INVALID_HID; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("i", "ia", loc_id, addr); @@ -238,24 +238,24 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Oopen_by_addr() */ - + /*------------------------------------------------------------------------- - * Function: H5Olink + * Function: H5Olink * - * Purpose: Creates a hard link from NEW_NAME to the object specified - * by OBJ_ID using properties defined in the Link Creation + * Purpose: Creates a hard link from NEW_NAME to the object specified + * by OBJ_ID using properties defined in the Link Creation * Property List LCPL. * - * This function should be used to link objects that have just + * This function should be used to link objects that have just * been created. * - * NEW_NAME is interpreted relative to - * NEW_LOC_ID, which is either a file ID or a - * group ID. + * NEW_NAME is interpreted relative to + * NEW_LOC_ID, which is either a file ID or a + * group ID. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: James Laird + * Programmer: James Laird * Tuesday, December 13, 2005 * *------------------------------------------------------------------------- @@ -264,8 +264,8 @@ herr_t H5Olink(hid_t obj_id, hid_t new_loc_id, const char *new_name, hid_t lcpl_id, hid_t lapl_id) { - H5G_loc_t new_loc; /* Location of group to link from */ - H5G_loc_t obj_loc; /* Location of object to link to */ + H5G_loc_t new_loc; /* Location of group to link from */ + H5G_loc_t obj_loc; /* Location of object to link to */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) @@ -292,19 +292,19 @@ H5Olink(hid_t obj_id, hid_t new_loc_id, const char *new_name, hid_t lcpl_id, if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, obj_id, TRUE) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") - /* Create a link to the object */ - if(H5O__create_link(&new_loc, new_name, &obj_loc, lcpl_id) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to create link") + /* Link to the object */ + if(H5L_link(&new_loc, new_name, &obj_loc, lcpl_id) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTCREATE, FAIL, "unable to create link") done: FUNC_LEAVE_API(ret_value) } /* end H5Olink() */ - + /*------------------------------------------------------------------------- - * Function: H5Oincr_refcount + * Function: H5Oincr_refcount * - * Purpose: Warning! This function is EXTREMELY DANGEROUS! + * Purpose: Warning! This function is EXTREMELY DANGEROUS! * Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA, * and other VERY BAD THINGS! * @@ -313,19 +313,19 @@ done: * that references an object by address is created. When the * link is deleted, H5Odecr_refcount should be used. * - * Return: Success: Non-negative - * Failure: Negative + * Return: Success: Non-negative + * Failure: Negative * - * Programmer: James Laird - * July 14 2006 + * Programmer: James Laird + * July 14 2006 * *------------------------------------------------------------------------- */ herr_t H5Oincr_refcount(hid_t object_id) { - H5O_loc_t *oloc; /* Object location */ - herr_t ret_value = SUCCEED; /* Return value */ + H5O_loc_t *oloc; /* Object location */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE1("e", "i", object_id); @@ -339,18 +339,18 @@ H5Oincr_refcount(hid_t object_id) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") /* Change the object's refcount */ - if(H5O__link(oloc, 1) < 0) + if(H5O_link(oloc, 1) < 0) HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, FAIL, "modifying object link count failed") done: FUNC_LEAVE_API(ret_value) } /* end H5O_incr_refcount() */ - + /*------------------------------------------------------------------------- - * Function: H5Odecr_refcount + * Function: H5Odecr_refcount * - * Purpose: Warning! This function is EXTREMELY DANGEROUS! + * Purpose: Warning! This function is EXTREMELY DANGEROUS! * Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA, * and other VERY BAD THINGS! * @@ -359,19 +359,19 @@ done: * that reference an object by address are deleted, and only * after H5Oincr_refcount has already been used. * - * Return: Success: Non-negative - * Failure: Negative + * Return: Success: Non-negative + * Failure: Negative * - * Programmer: James Laird - * July 14 2006 + * Programmer: James Laird + * July 14 2006 * *------------------------------------------------------------------------- */ herr_t H5Odecr_refcount(hid_t object_id) { - H5O_loc_t *oloc; /* Object location */ - herr_t ret_value = SUCCEED; /* Return value */ + H5O_loc_t *oloc; /* Object location */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE1("e", "i", object_id); @@ -385,31 +385,31 @@ H5Odecr_refcount(hid_t object_id) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") /* Change the object's refcount */ - if(H5O__link(oloc, -1) < 0) + if(H5O_link(oloc, -1) < 0) HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, FAIL, "modifying object link count failed") done: FUNC_LEAVE_API(ret_value) } /* end H5Odecr_refcount() */ - + /*------------------------------------------------------------------------- - * Function: H5Oexists_by_name + * Function: H5Oexists_by_name * - * Purpose: Determine if a linked-to object exists + * Purpose: Determine if a linked-to object exists * - * Return: Success: TRUE/FALSE - * Failure: Negative + * Return: Success: TRUE/FALSE + * Failure: Negative * - * Programmer: Quincey Koziol - * February 2 2010 + * Programmer: Quincey Koziol + * February 2 2010 * *------------------------------------------------------------------------- */ htri_t H5Oexists_by_name(hid_t loc_id, const char *name, hid_t lapl_id) { - H5G_loc_t loc; /* Location info */ + H5G_loc_t loc; /* Location info */ htri_t ret_value = FAIL; /* Return value */ FUNC_ENTER_API(FAIL) @@ -426,14 +426,14 @@ H5Oexists_by_name(hid_t loc_id, const char *name, hid_t lapl_id) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") /* Check if the object exists */ - if((ret_value = H5O__exists_by_name(&loc, name)) < 0) + if((ret_value = H5G_loc_exists(&loc, name)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to determine if '%s' exists", name) done: FUNC_LEAVE_API(ret_value) } /* end H5Oexists_by_name() */ - + /*------------------------------------------------------------------------- * Function: H5Oget_info2 * @@ -467,14 +467,14 @@ H5Oget_info2(hid_t loc_id, H5O_info_t *oinfo, unsigned fields) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") /* Retrieve the object's information */ - if(H5O__get_info_by_name(&loc, ".", oinfo/*out*/, fields) < 0) + if(H5G_loc_info(&loc, ".", oinfo/*out*/, fields) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object") done: FUNC_LEAVE_API(ret_value) } /* end H5Oget_info2() */ - + /*------------------------------------------------------------------------- * Function: H5Oget_info_by_name2 * @@ -494,7 +494,7 @@ herr_t H5Oget_info_by_name2(hid_t loc_id, const char *name, H5O_info_t *oinfo, unsigned fields, hid_t lapl_id) { - H5G_loc_t loc; /* Location of group */ + H5G_loc_t loc; /* Location of group */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) @@ -515,14 +515,14 @@ H5Oget_info_by_name2(hid_t loc_id, const char *name, H5O_info_t *oinfo, HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") /* Retrieve the object's information */ - if(H5O__get_info_by_name(&loc, name, oinfo/*out*/, fields) < 0) + if(H5G_loc_info(&loc, name, oinfo/*out*/, fields) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object: '%s'", name) done: FUNC_LEAVE_API(ret_value) } /* end H5Oget_info_by_name2() */ - + /*------------------------------------------------------------------------- * Function: H5Oget_info_by_idx2 * @@ -531,10 +531,10 @@ done: * * NOTE: Add a parameter "fields" to indicate selection of object info. * - * Return: Success: Non-negative - * Failure: Negative + * Return: Success: Non-negative + * Failure: Negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * November 26 2006 * *------------------------------------------------------------------------- @@ -543,7 +543,7 @@ herr_t H5Oget_info_by_idx2(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, unsigned fields, hid_t lapl_id) { - H5G_loc_t loc; /* Location of group */ + H5G_loc_t loc; /* Location of group */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) @@ -576,28 +576,28 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Oget_info_by_idx2() */ - + /*------------------------------------------------------------------------- - * Function: H5Oset_comment + * Function: H5Oset_comment * * Purpose: Gives the specified object a comment. The COMMENT string - * should be a null terminated string. An object can have only - * one comment at a time. Passing NULL for the COMMENT argument - * will remove the comment property from the object. + * should be a null terminated string. An object can have only + * one comment at a time. Passing NULL for the COMMENT argument + * will remove the comment property from the object. * - * Note: Deprecated in favor of using attributes on objects + * Note: Deprecated in favor of using attributes on objects * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * August 30 2007 + * Programmer: Quincey Koziol + * August 30 2007 * *------------------------------------------------------------------------- */ herr_t H5Oset_comment(hid_t obj_id, const char *comment) { - H5G_loc_t loc; /* Location of group */ + H5G_loc_t loc; /* Location of group */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) @@ -612,28 +612,28 @@ H5Oset_comment(hid_t obj_id, const char *comment) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set collective metadata read info") /* (Re)set the object's comment */ - if(H5O__set_comment_by_name(&loc, ".", comment) < 0) + if(H5G_loc_set_comment(&loc, ".", comment) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set comment for object") done: FUNC_LEAVE_API(ret_value) } /* end H5Oset_comment() */ - + /*------------------------------------------------------------------------- - * Function: H5Oset_comment_by_name + * Function: H5Oset_comment_by_name * * Purpose: Gives the specified object a comment. The COMMENT string - * should be a null terminated string. An object can have only - * one comment at a time. Passing NULL for the COMMENT argument - * will remove the comment property from the object. + * should be a null terminated string. An object can have only + * one comment at a time. Passing NULL for the COMMENT argument + * will remove the comment property from the object. * - * Note: Deprecated in favor of using attributes on objects + * Note: Deprecated in favor of using attributes on objects * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * August 30 2007 + * Programmer: Quincey Koziol + * August 30 2007 * *------------------------------------------------------------------------- */ @@ -641,7 +641,7 @@ herr_t H5Oset_comment_by_name(hid_t loc_id, const char *name, const char *comment, hid_t lapl_id) { - H5G_loc_t loc; /* Location of group */ + H5G_loc_t loc; /* Location of group */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) @@ -658,34 +658,34 @@ H5Oset_comment_by_name(hid_t loc_id, const char *name, const char *comment, HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") /* (Re)set the object's comment */ - if(H5O__set_comment_by_name(&loc, name, comment) < 0) + if(H5G_loc_set_comment(&loc, name, comment) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set comment for object: '%s'", name) done: FUNC_LEAVE_API(ret_value) } /* end H5Oset_comment_by_name() */ - + /*------------------------------------------------------------------------- - * Function: H5Oget_comment + * Function: H5Oget_comment * - * Purpose: Retrieve comment for an object. + * Purpose: Retrieve comment for an object. * - * Return: Success: Number of bytes in the comment excluding the - * null terminator. Zero if the object has no - * comment. + * Return: Success: Number of bytes in the comment excluding the + * null terminator. Zero if the object has no + * comment. * - * Failure: Negative + * Failure: Negative * - * Programmer: Quincey Koziol - * August 30 2007 + * Programmer: Quincey Koziol + * August 30 2007 * *------------------------------------------------------------------------- */ ssize_t H5Oget_comment(hid_t obj_id, char *comment, size_t bufsize) { - H5G_loc_t loc; /* Location of group */ + H5G_loc_t loc; /* Location of group */ ssize_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) @@ -696,27 +696,27 @@ H5Oget_comment(hid_t obj_id, char *comment, size_t bufsize) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") /* Retrieve the object's comment */ - if((ret_value = H5O__get_comment_by_name(&loc, ".", comment/*out*/, bufsize)) < 0) + if((ret_value = H5G_loc_get_comment(&loc, ".", comment/*out*/, bufsize)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get comment for object") done: FUNC_LEAVE_API(ret_value) } /* end H5Oget_comment() */ - + /*------------------------------------------------------------------------- - * Function: H5Oget_comment_by_name + * Function: H5Oget_comment_by_name * - * Purpose: Retrieve comment for an object. + * Purpose: Retrieve comment for an object. * - * Return: Success: Number of bytes in the comment excluding the - * null terminator. Zero if the object has no - * comment. + * Return: Success: Number of bytes in the comment excluding the + * null terminator. Zero if the object has no + * comment. * - * Failure: Negative + * Failure: Negative * - * Programmer: Quincey Koziol - * August 30 2007 + * Programmer: Quincey Koziol + * August 30 2007 * *------------------------------------------------------------------------- */ @@ -724,7 +724,7 @@ ssize_t H5Oget_comment_by_name(hid_t loc_id, const char *name, char *comment, size_t bufsize, hid_t lapl_id) { - H5G_loc_t loc; /* Location of group */ + H5G_loc_t loc; /* Location of group */ ssize_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) @@ -741,18 +741,18 @@ H5Oget_comment_by_name(hid_t loc_id, const char *name, char *comment, size_t buf HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") /* Retrieve the object's comment */ - if((ret_value = H5O__get_comment_by_name(&loc, name, comment/*out*/, bufsize)) < 0) + if((ret_value = H5G_loc_get_comment(&loc, name, comment/*out*/, bufsize)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get comment for object: '%s'", name) done: FUNC_LEAVE_API(ret_value) } /* end H5Oget_comment_by_name() */ - + /*------------------------------------------------------------------------- - * Function: H5Ovisit2 + * Function: H5Ovisit2 * - * Purpose: Recursively visit an object and all the objects reachable + * Purpose: Recursively visit an object and all the objects reachable * from it. If the starting object is a group, all the objects * linked to from that group will be visited. Links within * each group are visited according to the order within the @@ -772,14 +772,14 @@ done: * object info to be retrieved to the callback "op". * * Return: Success: The return value of the first operator that - * returns non-zero, or zero if all members were - * processed with no operator returning non-zero. + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. * * Failure: Negative if something goes wrong within the - * library, or the negative value returned by one - * of the operators. + * library, or the negative value returned by one + * of the operators. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * November 25 2007 * *------------------------------------------------------------------------- @@ -811,9 +811,9 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Ovisit2() */ - + /*------------------------------------------------------------------------- - * Function: H5Ovisit_by_name2 + * Function: H5Ovisit_by_name2 * * Purpose: Recursively visit an object and all the objects reachable * from it. If the starting object is a group, all the objects @@ -835,14 +835,14 @@ done: * object info to be retrieved to the callback "op". * * Return: Success: The return value of the first operator that - * returns non-zero, or zero if all members were - * processed with no operator returning non-zero. + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. * - * Failure: Negative if something goes wrong within the - * library, or the negative value returned by one - * of the operators. + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * November 24 2007 * *------------------------------------------------------------------------- @@ -881,22 +881,22 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Ovisit_by_name2() */ - + /*------------------------------------------------------------------------- - * Function: H5Oclose + * Function: H5Oclose * - * Purpose: Close an open file object. + * Purpose: Close an open file object. * * This is the companion to H5Oopen. It is used to close any * open object in an HDF5 file (but not IDs are that not file * objects, such as property lists and dataspaces). It has * the same effect as calling H5Gclose, H5Dclose, or H5Tclose. * - * Return: Success: Non-negative - * Failure: Negative + * Return: Success: Non-negative + * Failure: Negative * - * Programmer: James Laird - * July 14 2006 + * Programmer: James Laird + * July 14 2006 * *------------------------------------------------------------------------- */ @@ -941,26 +941,26 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Oclose() */ - + /*------------------------------------------------------------------------- - * Function: H5Odisable_mdc_flushes + * Function: H5Odisable_mdc_flushes * - * Purpose: To "cork" an object: - * --keep dirty entries associated with the object in the metadata cache + * Purpose: To "cork" an object: + * --keep dirty entries associated with the object in the metadata cache * - * Return: Success: Non-negative - * Failure: Negative + * Return: Success: Non-negative + * Failure: Negative * - * Programmer: Vailin Choi - * January 2014 + * Programmer: Vailin Choi + * January 2014 * *------------------------------------------------------------------------- */ herr_t H5Odisable_mdc_flushes(hid_t object_id) { - H5O_loc_t *oloc; /* Object location */ - herr_t ret_value = SUCCEED; /* Return value */ + H5O_loc_t *oloc; /* Object location */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE1("e", "i", object_id); @@ -976,27 +976,27 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Odisable_mdc_flushes() */ - + /*------------------------------------------------------------------------- - * Function: H5Oenable_mdc_flushes + * Function: H5Oenable_mdc_flushes * - * Purpose: To "uncork" an object - * --release keeping dirty entries associated with the object - * in the metadata cache + * Purpose: To "uncork" an object + * --release keeping dirty entries associated with the object + * in the metadata cache * - * Return: Success: Non-negative - * Failure: Negative + * Return: Success: Non-negative + * Failure: Negative * - * Programmer: Vailin Choi - * January 2014 + * Programmer: Vailin Choi + * January 2014 * *------------------------------------------------------------------------- */ herr_t H5Oenable_mdc_flushes(hid_t object_id) { - H5O_loc_t *oloc; /* Object location */ - herr_t ret_value = SUCCEED; /* Return value */ + H5O_loc_t *oloc; /* Object location */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE1("e", "i", object_id); @@ -1013,28 +1013,28 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Oenable_mdc_flushes() */ - + /*------------------------------------------------------------------------- - * Function: H5Oare_mdc_flushes_disabled + * Function: H5Oare_mdc_flushes_disabled * - * Purpose: Retrieve the object's "cork" status in the parameter "are_disabled": - * TRUE if mdc flushes for the object is disabled - * FALSE if mdc flushes for the object is not disabled - * Return error if the parameter "are_disabled" is not supplied + * Purpose: Retrieve the object's "cork" status in the parameter "are_disabled": + * TRUE if mdc flushes for the object is disabled + * FALSE if mdc flushes for the object is not disabled + * Return error if the parameter "are_disabled" is not supplied * - * Return: Success: Non-negative - * Failure: Negative + * Return: Success: Non-negative + * Failure: Negative * - * Programmer: Vailin Choi - * January 2014 + * Programmer: Vailin Choi + * January 2014 * *------------------------------------------------------------------------- */ herr_t H5Oare_mdc_flushes_disabled(hid_t object_id, hbool_t *are_disabled) { - H5O_loc_t *oloc; /* Object location */ - herr_t ret_value = SUCCEED; /* Return value */ + H5O_loc_t *oloc; /* Object location */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "i*b", object_id, are_disabled); @@ -1055,3 +1055,267 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Oare_mdc_flushes_disabled() */ +/* Future function prototypes to be deprecated in next major version + * see HDFFV-10552 +#ifndef H5_NO_DEPRECATED_SYMBOLS + */ + +/*------------------------------------------------------------------------- + * Function: H5Oget_info + * + * Purpose: Retrieve information about an object. + * + * Return: Success: Non-negative + * Failure: Negative + * + *------------------------------------------------------------------------- + */ +herr_t +H5Oget_info(hid_t loc_id, H5O_info_t *oinfo) +{ + H5G_loc_t loc; /* Location of group */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE2("e", "i*x", loc_id, oinfo); + + /* Check args */ + if(H5G_loc(loc_id, &loc) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + if(!oinfo) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") + + /* Retrieve the object's information */ + if(H5G_loc_info(&loc, ".", oinfo/*out*/, H5O_INFO_ALL) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object info") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Oget_info() */ + + +/*------------------------------------------------------------------------- + * Function: H5Oget_info_by_name + * + * Purpose: Retrieve information about an object. + * + * Return: Success: Non-negative + * Failure: Negative + * + *------------------------------------------------------------------------- + */ +herr_t +H5Oget_info_by_name(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t lapl_id) +{ + H5G_loc_t loc; /* Location of group */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE4("e", "i*s*xi", loc_id, name, oinfo, lapl_id); + + /* Check args */ + if(H5G_loc(loc_id, &loc) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + if(!name || !*name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name") + if(!oinfo) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") + + /* Retrieve the object's information */ + if(H5G_loc_info(&loc, name, oinfo/*out*/, H5O_INFO_ALL) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object: '%s'", name) + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Oget_info_by_name() */ + + +/*------------------------------------------------------------------------- + * Function: H5Oget_info_by_idx + * + * Purpose: Retrieve information about an object, according to the order + * of an index. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Quincey Koziol + * November 26 2006 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Oget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, + H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, hid_t lapl_id) +{ + H5G_loc_t loc; /* Location of group */ + H5G_loc_t obj_loc; /* Location used to open group */ + H5G_name_t obj_path; /* Opened object group hier. path */ + H5O_loc_t obj_oloc; /* Opened object object location */ + hbool_t loc_found = FALSE; /* Entry at 'name' found */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE7("e", "i*sIiIoh*xi", loc_id, group_name, idx_type, order, n, oinfo, + lapl_id); + + /* Check args */ + if(H5G_loc(loc_id, &loc) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + if(!group_name || !*group_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!oinfo) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") + + /* Retrieve the object's information */ + if(H5O__get_info_by_idx(&loc, group_name, idx_type, order, n, oinfo, H5O_INFO_ALL) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object") + +done: + /* Release the object location */ + if(loc_found && H5G_loc_free(&obj_loc) < 0) + HDONE_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "can't free location") + + FUNC_LEAVE_API(ret_value) +} /* end H5Oget_info_by_idx() */ + + +/*------------------------------------------------------------------------- + * Function: H5Ovisit + * + * Purpose: Recursively visit an object and all the objects reachable + * from it. If the starting object is a group, all the objects + * linked to from that group will be visited. Links within + * each group are visited according to the order within the + * specified index (unless the specified index does not exist for + * a particular group, then the "name" index is used). + * + * NOTE: Soft links and user-defined links are ignored during + * this operation. + * + * NOTE: Each _object_ reachable from the initial group will only + * be visited once. If multiple hard links point to the same + * object, the first link to the object's path (according to the + * iteration index and iteration order given) will be used to in + * the callback about the object. + * + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. + * + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. + * + * Programmer: Quincey Koziol + * November 25 2007 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Ovisit(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, + H5O_iterate_t op, void *op_data) +{ + herr_t ret_value; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE5("e", "iIiIox*x", obj_id, idx_type, order, op, op_data); + + /* Check args */ + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!op) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified") + + /* Call internal object visitation routine */ + if((ret_value = H5O__visit(obj_id, ".", idx_type, order, op, op_data, H5O_INFO_ALL)) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "object visitation failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Ovisit() */ + + +/*------------------------------------------------------------------------- + * Function: H5Ovisit_by_name + * + * Purpose: Recursively visit an object and all the objects reachable + * from it. If the starting object is a group, all the objects + * linked to from that group will be visited. Links within + * each group are visited according to the order within the + * specified index (unless the specified index does not exist for + * a particular group, then the "name" index is used). + * + * NOTE: Soft links and user-defined links are ignored during + * this operation. + * + * NOTE: Each _object_ reachable from the initial group will only + * be visited once. If multiple hard links point to the same + * object, the first link to the object's path (according to the + * iteration index and iteration order given) will be used to in + * the callback about the object. + * + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. + * + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. + * + * Programmer: Quincey Koziol + * November 24 2007 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Ovisit_by_name(hid_t loc_id, const char *obj_name, H5_index_t idx_type, + H5_iter_order_t order, H5O_iterate_t op, void *op_data, hid_t lapl_id) +{ + herr_t ret_value; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE7("e", "i*sIiIox*xi", loc_id, obj_name, idx_type, order, op, op_data, + lapl_id); + + /* Check args */ + if(!obj_name || !*obj_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name") + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!op) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") + + /* Call internal object visitation routine */ + if((ret_value = H5O__visit(loc_id, obj_name, idx_type, order, op, op_data, H5O_INFO_ALL)) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "object visitation failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Ovisit_by_name() */ + +/* Future function prototypes to be deprecated in next major version + * see HDFFV-10552 +#endif (* H5_NO_DEPRECATED_SYMBOLS *) + */ + diff --git a/src/H5Oattr.c b/src/H5Oattr.c index a62a3a3..1957554 100644 --- a/src/H5Oattr.c +++ b/src/H5Oattr.c @@ -177,6 +177,11 @@ H5O_attr_decode(H5F_t *f, H5O_t *open_oh, unsigned H5_ATTR_UNUSED mesg_flags, /* Decode and store the name */ if(NULL == (attr->shared->name = H5MM_strdup((const char *)p))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + + /* Make an attempt to detect corrupted name or name length - HDFFV-10588 */ + if(name_len != (HDstrlen(attr->shared->name) + 1)) + HGOTO_ERROR(H5E_ATTR, H5E_CANTDECODE, NULL, "attribute name has different length than stored length") + if(attr->shared->version < H5O_ATTR_VERSION_2) p += H5O_ALIGN_OLD(name_len); /* advance the memory pointer */ else diff --git a/src/H5Obogus.c b/src/H5Obogus.c index 92fd218..f10268e 100644 --- a/src/H5Obogus.c +++ b/src/H5Obogus.c @@ -49,7 +49,7 @@ const H5O_msg_class_t H5O_MSG_BOGUS_VALID[1] = {{ H5O_BOGUS_VALID_ID, /*message id number */ "bogus valid", /*message name for debugging */ 0, /*native message size */ - 0, /* messages are sharable? */ + H5O_SHARE_IS_SHARABLE, /* messages are sharable? */ H5O__bogus_decode, /*decode message */ H5O_bogus_encode, /*encode message */ NULL, /*copy the native value */ @@ -73,7 +73,7 @@ const H5O_msg_class_t H5O_MSG_BOGUS_INVALID[1] = {{ H5O_BOGUS_INVALID_ID, /*message id number */ "bogus invalid", /*message name for debugging */ 0, /*native message size */ - 0, /* messages are sharable? */ + H5O_SHARE_IS_SHARABLE, /* messages are sharable? */ H5O__bogus_decode, /*decode message */ H5O__bogus_encode, /*encode message */ NULL, /*copy the native value */ diff --git a/src/H5Ocache.c b/src/H5Ocache.c index 59e1705..d63ceb1 100644 --- a/src/H5Ocache.c +++ b/src/H5Ocache.c @@ -1390,7 +1390,8 @@ H5O__chunk_deserialize(H5O_t *oh, haddr_t addr, size_t len, const uint8_t *image /* Message size */ UINT16DECODE(chunk_image, mesg_size); - HDassert(mesg_size == H5O_ALIGN_OH(oh, mesg_size)); + if(mesg_size != H5O_ALIGN_OH(oh, mesg_size)) + HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "message not aligned") /* Message flags */ flags = *chunk_image++; @@ -1402,10 +1403,9 @@ H5O__chunk_deserialize(H5O_t *oh, haddr_t addr, size_t len, const uint8_t *image HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "bad flag combination for message") if((flags & H5O_MSG_FLAG_WAS_UNKNOWN) && !(flags & H5O_MSG_FLAG_MARK_IF_UNKNOWN)) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "bad flag combination for message") - if((flags & H5O_MSG_FLAG_SHAREABLE) - && H5O_msg_class_g[id] - && !(H5O_msg_class_g[id]->share_flags & H5O_SHARE_IS_SHARABLE)) - HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "message of unsharable class flagged as sharable") + /* Delay checking the "shareable" flag until we've made sure id + * references a valid message class that this version of the library + * knows about */ /* Reserved bytes/creation index */ if(oh->version == H5O_VERSION_1) @@ -1517,9 +1517,17 @@ H5O__chunk_deserialize(H5O_t *oh, haddr_t addr, size_t len, const uint8_t *image mesgs_modified = TRUE; } /* end if */ } /* end if */ - else + else { + /* Check for message of unshareable class marked as "shareable" + */ + if((flags & H5O_MSG_FLAG_SHAREABLE) + && H5O_msg_class_g[id] + && !(H5O_msg_class_g[id]->share_flags & H5O_SHARE_IS_SHARABLE)) + HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "message of unshareable class flagged as shareable") + /* Set message class for "known" messages */ mesg->type = H5O_msg_class_g[id]; + } /* end else */ /* Do some inspection/interpretation of new messages from this chunk */ /* (detect continuation messages, ref. count messages, etc.) */ @@ -1619,7 +1627,7 @@ H5O__chunk_deserialize(H5O_t *oh, haddr_t addr, size_t len, const uint8_t *image done: if(ret_value < 0 && udata->cont_msg_info->msgs) { - udata->cont_msg_info->msgs = (H5O_chunk_t *)H5FL_SEQ_FREE(H5O_cont_t, udata->cont_msg_info->msgs); + udata->cont_msg_info->msgs = H5FL_SEQ_FREE(H5O_cont_t, udata->cont_msg_info->msgs); udata->cont_msg_info->alloc_nmsgs = 0; } FUNC_LEAVE_NOAPI(ret_value) diff --git a/src/H5Ocopy.c b/src/H5Ocopy.c index 2e628f4..b57eaf6 100644 --- a/src/H5Ocopy.c +++ b/src/H5Ocopy.c @@ -242,9 +242,6 @@ done: * * Purpose: Internal routine to copy an object * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: Non-negative * Failure: Negative * @@ -265,7 +262,7 @@ H5O__copy(const H5G_loc_t *loc, const char *src_name, H5G_loc_t *dst_loc, hbool_t obj_open = FALSE; /* Entry at 'name' found */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* Check arguments */ HDassert(loc); @@ -322,7 +319,7 @@ done: if(obj_open && H5O_close(&src_oloc, NULL) < 0) HDONE_ERROR(H5E_OHDR, H5E_CLOSEERROR, FAIL, "unable to release object header") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5O__copy() */ diff --git a/src/H5Odeprec.c b/src/H5Odeprec.c index 2600ea3..33ed787 100644 --- a/src/H5Odeprec.c +++ b/src/H5Odeprec.c @@ -71,7 +71,7 @@ /*******************/ -/* Future function prototypes to be deprecated in next major version +/* Compatibility function prototypes to replace non-versioned function for use by macro in next version * see HDFFV-10552 #ifndef H5_NO_DEPRECATED_SYMBOLS */ @@ -102,8 +102,8 @@ H5Oget_info1(hid_t loc_id, H5O_info_t *oinfo) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") /* Retrieve the object's information */ - if(H5O__get_info_by_name(&loc, ".", oinfo/*out*/, H5O_INFO_ALL) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object") + if(H5G_loc_info(&loc, ".", oinfo/*out*/, H5O_INFO_ALL) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object info") done: FUNC_LEAVE_API(ret_value) @@ -142,7 +142,7 @@ H5Oget_info_by_name1(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t la HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") /* Retrieve the object's information */ - if(H5O__get_info_by_name(&loc, name, oinfo/*out*/, H5O_INFO_ALL) < 0) + if(H5G_loc_info(&loc, name, oinfo/*out*/, H5O_INFO_ALL) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object: '%s'", name) done: @@ -330,7 +330,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Ovisit_by_name1() */ -/* Future function prototypes to be deprecated in next major version +/* Compatibility function prototypes to replace non-versioned function for use by macro in next version * see HDFFV-10552 #endif (* H5_NO_DEPRECATED_SYMBOLS *) */ diff --git a/src/H5Oflush.c b/src/H5Oflush.c index e8e077e..d8c9530 100644 --- a/src/H5Oflush.c +++ b/src/H5Oflush.c @@ -49,7 +49,6 @@ static herr_t H5O__flush(hid_t obj_id); static herr_t H5O__oh_tag(const H5O_loc_t *oloc, haddr_t *tag); static herr_t H5O__refresh_metadata_close(hid_t oid, H5O_loc_t oloc, H5G_loc_t *obj_loc); -static herr_t H5O__refresh(hid_t obj_id); /*************/ @@ -133,9 +132,6 @@ done: * * Purpose: Internal routine to flush an object * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: Non-negative * Failure: Negative * @@ -152,7 +148,7 @@ H5O__flush(hid_t obj_id) const H5O_obj_class_t *obj_class; /* Class of object */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* Check args */ if(NULL == (oloc = H5O_get_loc(obj_id))) @@ -175,7 +171,7 @@ H5O__flush(hid_t obj_id) HGOTO_ERROR(H5E_OHDR, H5E_CANTFLUSH, FAIL, "unable to flush object and object flush callback") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5O__flush() */ @@ -235,17 +231,22 @@ done: herr_t H5Orefresh(hid_t oid) { - herr_t ret_value = SUCCEED; /* Return value */ + H5O_loc_t *oloc; /* object location */ + herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_API(FAIL) H5TRACE1("e", "i", oid); + /* Check args */ + if(NULL == (oloc = H5O_get_loc(oid))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not an object") + /* Set up collective metadata if appropriate */ if(H5CX_set_loc(oid) < 0) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "can't set access property list info") /* Call internal routine */ - if(H5O__refresh(oid) < 0) + if(H5O_refresh_metadata(oid, *oloc) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to refresh object") done: @@ -460,40 +461,3 @@ done: FUNC_LEAVE_NOAPI(ret_value); } /* end H5O_refresh_metadata_reopen() */ - -/*------------------------------------------------------------------------- - * Function: H5O__refresh - * - * Purpose: Internal routine to refresh an object - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 29, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5O__refresh(hid_t obj_id) -{ - H5O_loc_t *oloc; /* Object location */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Check args */ - if(NULL == (oloc = H5O_get_loc(obj_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not an object") - - /* Private function */ - if(H5O_refresh_metadata(obj_id, *oloc) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to refresh object") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5O__refresh() */ - diff --git a/src/H5Oint.c b/src/H5Oint.c index 2752a25..09e6bb8 100644 --- a/src/H5Oint.c +++ b/src/H5Oint.c @@ -126,12 +126,7 @@ const H5O_msg_class_t *const H5O_msg_class_g[] = { H5O_MSG_REFCOUNT, /*0x0016 Object's ref. count */ H5O_MSG_FSINFO, /*0x0017 Free-space manager info */ H5O_MSG_MDCI, /*0x0018 Metadata cache image */ - H5O_MSG_UNKNOWN, /*0x0019 Placeholder for unknown message */ -#ifdef H5O_ENABLE_BOGUS - H5O_MSG_BOGUS_INVALID, /*0x001A "Bogus invalid" (for testing) */ -#else /* H5O_ENABLE_BOGUS */ - NULL, /*0x001A "Bogus invalid" (for testing) */ -#endif /* H5O_ENABLE_BOGUS */ + H5O_MSG_UNKNOWN /*0x0019 Placeholder for unknown message */ }; /* Format version bounds for object header */ @@ -285,52 +280,137 @@ H5O_create(H5F_t *f, size_t size_hint, size_t initial_rc, hid_t ocpl_id, { H5P_genplist_t *oc_plist; /* Object creation property list */ H5O_t *oh = NULL; /* Object header created */ + herr_t ret_value = SUCCEED; /* return value */ haddr_t oh_addr; /* Address of initial object header */ size_t oh_size; /* Size of initial object header */ - uint8_t oh_flags; /* Object header's initial status flags */ - unsigned insert_flags = H5AC__NO_FLAGS_SET; /* Flags for inserting object header into cache */ - hbool_t store_msg_crt_idx; /* Whether to always store message creation indices for this file */ - herr_t ret_value = SUCCEED; /* return value */ + uint8_t oh_flags; /* Object header's initial status flags */ + unsigned insert_flags = H5AC__NO_FLAGS_SET; /* Flags for inserting objec t header into cache */ + hbool_t store_msg_crt_idx; /* Whether to always store message crea tion indices for this file */ FUNC_ENTER_NOAPI(FAIL) - /* check args */ HDassert(f); HDassert(loc); HDassert(TRUE == H5P_isa_class(ocpl_id, H5P_OBJECT_CREATE)); + /* create object header in freelist + * header version is set internally + */ + oh = H5O__create_ohdr(f, ocpl_id); + if(NULL == oh) + HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, FAIL, "Can't instantiate object header") + + /* apply object header information to file + */ + if(H5O__apply_ohdr(f, oh, ocpl_id, size_hint, initial_rc, loc) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, FAIL, "Can't apply object header to file") + +done: + if((FAIL == ret_value) && (NULL != oh) && (H5O__free(oh) < 0)) + HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "can't delete object header") + + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5O_create() */ + + +/*----------------------------------------------------------------------------- + * Function: H5O__create_ohdr + * + * Purpose: Create the object header, set version and flags. + * + * Return: Success: Pointer to the newly-crated header object. + * Failure: NULL + * + * Programmer: Jacob Smith + * 2018 August 17 + * + *----------------------------------------------------------------------------- + */ +H5O_t * +H5O__create_ohdr(H5F_t *f, hid_t ocpl_id) +{ + H5P_genplist_t *oc_plist; + H5O_t *oh = NULL; /* Object header in Freelist */ + uint8_t oh_flags; /* Initial status flags */ + H5O_t *ret_value = NULL; + + FUNC_ENTER_NOAPI(NULL) + + HDassert(f); + HDassert(TRUE == H5P_isa_class(ocpl_id, H5P_OBJECT_CREATE)); + /* Check for invalid access request */ if(0 == (H5F_INTENT(f) & H5F_ACC_RDWR)) - HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, FAIL, "no write intent on file") + HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, NULL, "no write intent on file") /* Make certain we allocate at least a reasonable size for the object header */ - size_hint = H5O_ALIGN_F(f, MAX(H5O_MIN_SIZE, size_hint)); + oh = H5FL_CALLOC(H5O_t); + if(NULL == oh) + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") - /* Get the property list */ - if(NULL == (oc_plist = (H5P_genplist_t *)H5I_object(ocpl_id))) - HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a property list") + oc_plist = (H5P_genplist_t *)H5I_object(ocpl_id); + if(NULL == oc_plist) + HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, NULL, "not a property list") /* Get any object header status flags set by properties */ if(H5P_get(oc_plist, H5O_CRT_OHDR_FLAGS_NAME, &oh_flags) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get object header flags") + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get object header flags") - /* Allocate the object header and zero out header fields */ - if(NULL == (oh = H5FL_CALLOC(H5O_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") + if(H5O_set_version(f, oh, oh_flags, H5F_STORE_MSG_CRT_IDX(f)) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, NULL, "can't set version of object header") - /* Initialize file-specific information for object header */ - store_msg_crt_idx = H5F_STORE_MSG_CRT_IDX(f); + oh->flags = oh_flags; - if(H5O_set_version(f, oh, oh_flags, store_msg_crt_idx) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set version of objecdt header") + ret_value = oh; + +done: + if((NULL == ret_value) && (NULL != oh) && (H5O__free(oh) < 0)) + HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, NULL, "can't delete object header") + + FUNC_LEAVE_NOAPI(ret_value) +} /* H5O__create_ohdr() */ + + +/*----------------------------------------------------------------------------- + * Function: H5O__apply_ohdr + * + * Purpose: Initialize and set the object header in the file. + * Record some information at `loc_out`. + * + * Return: Success: SUCCEED (0) (non-negative value) + * Failure: FAIL (-1) (negative value) + * + * Programmer: Jacob Smith + * 2018 August 17 + * + *----------------------------------------------------------------------------- + */ +herr_t +H5O__apply_ohdr(H5F_t *f, H5O_t *oh, hid_t ocpl_id, size_t size_hint, size_t initial_rc, H5O_loc_t *loc_out) +{ + haddr_t oh_addr; + size_t oh_size; + H5P_genplist_t *oc_plist = NULL; + unsigned insert_flags = H5AC__NO_FLAGS_SET; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + HDassert(f); + HDassert(loc_out); + HDassert(oh); + HDassert(TRUE == H5P_isa_class(ocpl_id, H5P_OBJECT_CREATE)); + + /* Allocate at least a reasonable size for the object header */ + size_hint = H5O_ALIGN_F(f, MAX(H5O_MIN_SIZE, size_hint)); oh->sizeof_size = H5F_SIZEOF_SIZE(f); oh->sizeof_addr = H5F_SIZEOF_ADDR(f); - oh->swmr_write = !!(H5F_INTENT(f) & H5F_ACC_SWMR_WRITE); + oh->swmr_write = !!(H5F_INTENT(f) & H5F_ACC_SWMR_WRITE); /* strange casting for proper type */ #ifdef H5O_ENABLE_BAD_MESG_COUNT /* Check whether the "bad message count" property is set */ if(H5P_exist_plist(oc_plist, H5O_BAD_MESG_COUNT_NAME) > 0) { - /* Retrieve bad message count flag */ + /* Get bad message count flag from property list */ if(H5P_get(oc_plist, H5O_BAD_MESG_COUNT_NAME, &oh->store_bad_mesg_count) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get bad message count flag") } @@ -341,12 +421,14 @@ H5O_create(H5F_t *f, size_t size_hint, size_t initial_rc, hid_t ocpl_id, /* Create virtual entry, for use as proxy */ if(NULL == (oh->proxy = H5AC_proxy_entry_create())) HGOTO_ERROR(H5E_OHDR, H5E_CANTCREATE, FAIL, "can't create object header proxy") - } - else + } else { oh->proxy = NULL; + } /* Set initial status flags */ - oh->flags = oh_flags; + oc_plist = (H5P_genplist_t *)H5I_object(ocpl_id); + if(NULL == oc_plist) + HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a property list") /* Initialize version-specific fields */ if(oh->version > H5O_VERSION_1) { @@ -356,10 +438,7 @@ H5O_create(H5F_t *f, size_t size_hint, size_t initial_rc, hid_t ocpl_id, else oh->atime = oh->mtime = oh->ctime = oh->btime = 0; - /* Make certain attribute creation order tracking is enabled if - * attributes can be shared in this file. - */ - if(store_msg_crt_idx) + if(H5F_STORE_MSG_CRT_IDX(f)) /* flag to record message creation indices */ oh->flags |= H5O_HDR_ATTR_CRT_ORDER_TRACKED; /* Retrieve attribute storage phase change values from property list */ @@ -383,11 +462,10 @@ H5O_create(H5F_t *f, size_t size_hint, size_t initial_rc, hid_t ocpl_id, oh->flags |= H5O_HDR_CHUNK0_4; else if(size_hint > 255) oh->flags |= H5O_HDR_CHUNK0_2; - } /* end if */ - else { + } else { /* Reset unused time fields */ oh->atime = oh->mtime = oh->ctime = oh->btime = 0; - } /* end else */ + } /* end if/else header version > 1 */ /* Compute total size of initial object header */ /* (i.e. object header prefix and first chunk) */ @@ -452,20 +530,16 @@ H5O_create(H5F_t *f, size_t size_hint, size_t initial_rc, hid_t ocpl_id, H5_END_TAG /* Set up object location */ - loc->file = f; - loc->addr = oh_addr; + loc_out->file = f; + loc_out->addr = oh_addr; /* Open it */ - if(H5O_open(loc) < 0) + if(H5O_open(loc_out) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTOPENOBJ, FAIL, "unable to open object header") done: - if(ret_value < 0 && oh) - if(H5O__free(oh) < 0) - HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to destroy object header data") - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5O_create() */ +} /* end H5O__apply_ohdr() */ /*------------------------------------------------------------------------- @@ -565,49 +639,10 @@ done: /*------------------------------------------------------------------------- - * Function: H5O__open_name - * - * Purpose: Internal routine to open an object by name - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 28, 2017 - * - *------------------------------------------------------------------------- - */ -hid_t -H5O__open_name(const H5G_loc_t *loc, const char *name) -{ - hid_t ret_value = H5I_INVALID_HID; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check arguments */ - HDassert(loc); - HDassert(name); - - /* Open the object */ - if((ret_value = H5O_open_name(loc, name, TRUE)) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTOPENOBJ, H5I_INVALID_HID, "unable to open object") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5O__open_name() */ - - -/*------------------------------------------------------------------------- * Function: H5O__open_by_idx * * Purpose: Internal routine to open an object by index within group * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: Non-negative * Failure: Negative * @@ -626,7 +661,7 @@ H5O__open_by_idx(const H5G_loc_t *loc, const char *name, H5_index_t idx_type, hbool_t loc_found = FALSE; /* Entry at 'name' found */ hid_t ret_value = H5I_INVALID_HID; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check arguments */ HDassert(loc); @@ -651,7 +686,7 @@ done: if(H5G_loc_free(&obj_loc) < 0) HDONE_ERROR(H5E_OHDR, H5E_CANTRELEASE, H5I_INVALID_HID, "can't free location") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5O__open_by_idx() */ @@ -660,9 +695,6 @@ done: * * Purpose: Internal routine to open an object by its address * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * * Return: Success: Non-negative * Failure: Negative * @@ -679,7 +711,7 @@ H5O__open_by_addr(const H5G_loc_t *loc, haddr_t addr) H5O_loc_t obj_oloc; /* Opened object object location */ hid_t ret_value = H5I_INVALID_HID; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check arguments */ HDassert(loc); @@ -697,7 +729,7 @@ H5O__open_by_addr(const H5G_loc_t *loc, haddr_t addr) HGOTO_ERROR(H5E_OHDR, H5E_CANTOPENOBJ, H5I_INVALID_HID, "unable to open object") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5O__open_by_addr() */ @@ -739,44 +771,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5O__create_link - * - * Purpose: Internal routine to create a link from a group to an object - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 28, 2017 - * - *------------------------------------------------------------------------- - */ -herr_t -H5O__create_link(const H5G_loc_t *new_loc, const char *new_name, - H5G_loc_t *obj_loc, hid_t lcpl_id) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check arguments */ - HDassert(new_loc); - HDassert(new_name && *new_name); - HDassert(obj_loc); - - /* Link to the object */ - if(H5L_link(new_loc, new_name, obj_loc, lcpl_id) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTCREATE, FAIL, "unable to create link") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5O__create_link() */ - - -/*------------------------------------------------------------------------- * Function: H5O_close * * Purpose: Closes an object header that was previously open. @@ -1004,41 +998,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5O__link - * - * Purpose: Internal routine to change the refcount for an object - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 28, 2017 - * - *------------------------------------------------------------------------- - */ -herr_t -H5O__link(const H5O_loc_t *oloc, int adjust) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check arguments */ - HDassert(oloc); - - /* Change the object's refcount */ - if(H5O_link(oloc, adjust) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, FAIL, "modifying object link count failed") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5O__link() */ - - -/*------------------------------------------------------------------------- * Function: H5O_protect * * Purpose: Wrapper around H5AC_protect for use during a H5O_protect-> @@ -2051,42 +2010,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5O__exists_by_name - * - * Purpose: Internal routine to check if an object exists - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 28, 2017 - * - *------------------------------------------------------------------------- - */ -htri_t -H5O__exists_by_name(const H5G_loc_t *loc, const char *name) -{ - htri_t ret_value = FAIL; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check arguments */ - HDassert(loc); - HDassert(name && *name); - - /* Check if the object exists */ - if((ret_value = H5G_loc_exists(loc, name)) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to determine if '%s' exists", name) - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5O__exists_by_name() */ - - -/*------------------------------------------------------------------------- * Function: H5O_get_hdr_info * * Purpose: Retrieve the object header information for an object @@ -2342,52 +2265,11 @@ done: /*------------------------------------------------------------------------- - * Function: H5O__get_info_by_name - * - * Purpose: Internal routine to retrieve an object's info - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Note: Add a parameter "fields" to indicate selection of object info. - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 28, 2017 - * - *------------------------------------------------------------------------- - */ -herr_t -H5O__get_info_by_name(const H5G_loc_t *loc, const char *name, H5O_info_t *oinfo, unsigned fields) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check arguments */ - HDassert(loc); - HDassert(name && *name); - HDassert(oinfo); - - /* Retrieve the object's information */ - if(H5G_loc_info(loc, name, oinfo/*out*/, fields) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object info") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5O__get_info_by_name() */ - - -/*------------------------------------------------------------------------- * Function: H5O__get_info_by_idx * * Purpose: Internal routine to retrieve an object's info according to * an index within a group. * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). * * Note: Add a parameter "fields" to indicate selection of object info. * @@ -2409,7 +2291,7 @@ H5O__get_info_by_idx(const H5G_loc_t *loc, const char *group_name, H5_index_t id hbool_t loc_found = FALSE; /* Entry at 'name' found */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check arguments */ HDassert(loc); @@ -2435,85 +2317,11 @@ done: if(loc_found && H5G_loc_free(&obj_loc) < 0) HDONE_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "can't free location") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5O__get_info_by_idx() */ /*------------------------------------------------------------------------- - * Function: H5O__set_comment_by_name - * - * Purpose: Internal routine to set an object's "comment" - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 28, 2017 - * - *------------------------------------------------------------------------- - */ -herr_t -H5O__set_comment_by_name(const H5G_loc_t *loc, const char *name, - const char *comment) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check arguments */ - HDassert(loc); - HDassert(name && *name); - - /* (Re)set the object's comment */ - if(H5G_loc_set_comment(loc, name, comment) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set comment for object") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5O__set_comment_by_name() */ - - -/*------------------------------------------------------------------------- - * Function: H5O__get_comment_by_name - * - * Purpose: Internal routine to retrieve an object's "comment" - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 28, 2017 - * - *------------------------------------------------------------------------- - */ -ssize_t -H5O__get_comment_by_name(const H5G_loc_t *loc, const char *name, - char *comment, size_t bufsize) -{ - ssize_t ret_value = FAIL; /* Return value */ - - FUNC_ENTER_PACKAGE_VOL - - /* Check arguments */ - HDassert(loc); - HDassert(name && *name); - - /* Retrieve the object's comment */ - if((ret_value = H5G_loc_get_comment(loc, name, comment/*out*/, bufsize)) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get comment for object") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5O__get_comment_by_name() */ - - -/*------------------------------------------------------------------------- * Function: H5O_get_create_plist * * Purpose: Retrieve the object creation properties for an object @@ -2686,6 +2494,63 @@ H5O_get_oh_addr(const H5O_t *oh) /*------------------------------------------------------------------------- + * Function: H5O_get_oh_flags + * + * Programmer: Jacob Smith + * 2018 August 17 + * + *------------------------------------------------------------------------- + */ +uint8_t +H5O_get_oh_flags(const H5O_t *oh) +{ + FUNC_ENTER_NOAPI_NOINIT_NOERR + HDassert(oh); + FUNC_LEAVE_NOAPI(oh->flags); /* flags can be 0 */ +} /* H5O_get_oh_flags() */ + + +/*------------------------------------------------------------------------- + * Function: H5O_get_oh_mtime + * + * Purpose: Retrieve an object's modification time. Assumes that the + * caller has verified that accessing this variable is appropriate + * to the header in question. + * + * Programmer: Jacob Smith + * 2018 August 17 + * + *------------------------------------------------------------------------- + */ +time_t +H5O_get_oh_mtime(const H5O_t *oh) +{ + FUNC_ENTER_NOAPI_NOINIT_NOERR + HDassert(oh); + HDassert(oh->mtime); + FUNC_LEAVE_NOAPI(oh->mtime); +} /* H5O_get_oh_mtime() */ + + +/*------------------------------------------------------------------------- + * Function: H5O_get_oh_version + * + * Programmer: Jacob Smith + * 2018 August 17 + * + *------------------------------------------------------------------------- + */ +uint8_t +H5O_get_oh_version(const H5O_t *oh) +{ + FUNC_ENTER_NOAPI_NOINIT_NOERR + HDassert(oh); + HDassert(oh->version); + FUNC_LEAVE_NOAPI(oh->version); +} /* H5O_get_oh_version() */ + + +/*------------------------------------------------------------------------- * Function: H5O_get_rc_and_type * * Purpose: Retrieve an object's reference count and type @@ -2893,7 +2758,7 @@ H5O__visit(hid_t loc_id, const char *obj_name, H5_index_t idx_type, hid_t obj_id = (-1); /* ID of object */ herr_t ret_value = FAIL; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Portably initialize user data struct to zeros */ HDmemset(&udata, 0, sizeof(udata)); @@ -2981,7 +2846,7 @@ done: if(udata.visited) H5SL_destroy(udata.visited, H5O__free_visit_visited, NULL); - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5O__visit() */ diff --git a/src/H5Olayout.c b/src/H5Olayout.c index c880435..d0c7f3e 100644 --- a/src/H5Olayout.c +++ b/src/H5Olayout.c @@ -243,9 +243,15 @@ H5O__layout_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, H5F_addr_decode(f, &p, &(mesg->storage.u.chunk.idx_addr)); /* Chunk dimensions */ - for(u = 0; u < mesg->u.chunk.ndims; u++) + for(u = 0; u < mesg->u.chunk.ndims; u++) { UINT32DECODE(p, mesg->u.chunk.dim[u]); + /* Just in case that something goes very wrong, such as file corruption. */ + if(mesg->u.chunk.dim[u] == 0) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, NULL, "chunk dimension must be positive: mesg->u.chunk.dim[%u] = %u", + u, mesg->u.chunk.dim[u]) + } /* end for */ + /* Compute chunk size */ for(u = 1, mesg->u.chunk.size = mesg->u.chunk.dim[0]; u < mesg->u.chunk.ndims; u++) mesg->u.chunk.size *= mesg->u.chunk.dim[u]; diff --git a/src/H5Omessage.c b/src/H5Omessage.c index e156dcd..b38d74e 100644 --- a/src/H5Omessage.c +++ b/src/H5Omessage.c @@ -1598,16 +1598,23 @@ H5O_msg_is_shared(unsigned type_id, const void *mesg) FUNC_ENTER_NOAPI_NOINIT_NOERR /* Check args */ - HDassert(type_id < NELMTS(H5O_msg_class_g)); - type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */ - HDassert(type); - HDassert(mesg); - - /* If messages in a class aren't sharable, then obviously this message isn't shared! :-) */ - if(type->share_flags & H5O_SHARE_IS_SHARABLE) - ret_value = H5O_IS_STORED_SHARED(((const H5O_shared_t *)mesg)->type); - else +#ifdef H5O_ENABLE_BOGUS + if(type_id >= NELMTS(H5O_msg_class_g)) ret_value = FALSE; + else +#endif /* H5O_ENABLE_BOGUS */ + { + HDassert(type_id < NELMTS(H5O_msg_class_g)); + type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */ + HDassert(type); + HDassert(mesg); + + /* If messages in a class aren't sharable, then obviously this message isn't shared! :-) */ + if(type->share_flags & H5O_SHARE_IS_SHARABLE) + ret_value = H5O_IS_STORED_SHARED(((const H5O_shared_t *)mesg)->type); + else + ret_value = FALSE; + } /* end block/else */ FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_msg_is_shared() */ diff --git a/src/H5Opkg.h b/src/H5Opkg.h index 616f96b..a3cc27f 100644 --- a/src/H5Opkg.h +++ b/src/H5Opkg.h @@ -29,7 +29,7 @@ #define H5O_NMESGS 8 /*initial number of messages */ #define H5O_NCHUNKS 2 /*initial number of chunks */ #define H5O_MIN_SIZE 22 /* Min. obj header data size (must be big enough for a message prefix and a continuation message) */ -#define H5O_MSG_TYPES 27 /* # of types of messages */ +#define H5O_MSG_TYPES 26 /* # of types of messages */ #define H5O_MAX_CRT_ORDER_IDX 65535 /* Max. creation order index value */ /* Versions of object header structure */ @@ -555,25 +555,14 @@ H5_DLLVAR const H5O_obj_class_t H5O_OBJ_DATASET[1]; H5_DLLVAR const H5O_obj_class_t H5O_OBJ_DATATYPE[1]; /* Package-local function prototypes */ -H5_DLL hid_t H5O__open_name(const H5G_loc_t *loc, const char *name); H5_DLL hid_t H5O__open_by_idx(const H5G_loc_t *loc, const char *name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n); H5_DLL hid_t H5O__open_by_addr(const H5G_loc_t *loc, haddr_t addr); H5_DLL hid_t H5O__open_by_loc(const H5G_loc_t *obj_loc, hbool_t app_ref); -H5_DLL herr_t H5O__create_link(const H5G_loc_t *new_loc, const char *new_name, - H5G_loc_t *obj_loc, hid_t lcpl_id); H5_DLL const H5O_obj_class_t *H5O__obj_class(const H5O_loc_t *loc); H5_DLL int H5O__link_oh(H5F_t *f, int adjust, H5O_t *oh, hbool_t *deleted); -H5_DLL herr_t H5O__link(const H5O_loc_t *loc, int adjust); -H5_DLL htri_t H5O__exists_by_name(const H5G_loc_t *loc, const char *name); -H5_DLL herr_t H5O__get_info_by_name(const H5G_loc_t *loc, const char *name, - H5O_info_t *oinfo, unsigned fields); H5_DLL herr_t H5O__get_info_by_idx(const H5G_loc_t *loc, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, unsigned fields); -H5_DLL herr_t H5O__set_comment_by_name(const H5G_loc_t *loc, const char *name, - const char *comment); -H5_DLL ssize_t H5O__get_comment_by_name(const H5G_loc_t *loc, const char *name, - char *comment, size_t bufsize); H5_DLL herr_t H5O__visit(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op, void *op_data, unsigned fields); H5_DLL herr_t H5O__inc_rc(H5O_t *oh); diff --git a/src/H5Oprivate.h b/src/H5Oprivate.h index 10063d5..34683fe 100644 --- a/src/H5Oprivate.h +++ b/src/H5Oprivate.h @@ -120,8 +120,14 @@ typedef struct H5O_mesg_t H5O_mesg_t; /* If the module using this macro is allowed access to the private variables, access them directly */ #ifdef H5O_MODULE #define H5O_OH_GET_ADDR(O) ((O)->chunk[0].addr) +#define H5O_OH_GET_VERSION ((O)->version) +#define H5O_OH_GET_FLAGS(O) ((O)->flags) +#define H5O_OH_GET_MTIME(O) ((O)->mtime) #else /* H5O_MODULE */ #define H5O_OH_GET_ADDR(O) (H5O_get_oh_addr(O)) +#define H5O_OH_GET_VERSION(O) (H5O_get_oh_version(O)) +#define H5O_OH_GET_FLAGS(O) (H5O_get_oh_flags(O)) +#define H5O_OH_GET_MTIME(O) (H5O_get_oh_mtime(O)) #endif /* H5O_MODULE */ /* Set the fields in a shared message structure */ @@ -220,11 +226,11 @@ typedef struct H5O_copy_t { * Note: Must increment H5O_MSG_TYPES in H5Opkg.h and update H5O_msg_class_g * in H5O.c when creating a new message type. Also bump the value of * H5O_BOGUS_INVALID_ID, below, to be one greater than the value of - * H5O_UNKNOWN_ID. + * H5O_UNKNOWN_ID, and re-run gen_bogus.c. * * (this should never exist in a file) */ -#define H5O_BOGUS_INVALID_ID 0x001A /* "Bogus invalid" Message. */ +#define H5O_BOGUS_INVALID_ID 0x001a /* "Bogus invalid" Message. */ /* Shared object message types. * Shared objects can be committed, in which case the shared message contains @@ -644,6 +650,7 @@ typedef struct H5O_layout_t { */ #define H5O_BOGUS_VALUE 0xdeadbeef typedef struct H5O_bogus_t { + H5O_shared_t sh_loc; /* Shared message info (must be first) */ unsigned u; /* Hold the bogus info */ } H5O_bogus_t; #endif /* H5O_ENABLE_BOGUS */ @@ -865,6 +872,9 @@ struct H5P_genplist_t; H5_DLL herr_t H5O_init(void); H5_DLL herr_t H5O_create(H5F_t *f, size_t size_hint, size_t initial_rc, hid_t ocpl_id, H5O_loc_t *loc/*out*/); +H5_DLL H5O_t *H5O__create_ohdr(H5F_t *f, hid_t ocpl_id); +H5_DLL herr_t H5O__apply_ohdr(H5F_t *f, H5O_t *oh, hid_t ocpl_id, + size_t size_hint, size_t initial_rc, H5O_loc_t *loc_out); H5_DLL herr_t H5O_open(H5O_loc_t *loc); H5_DLL herr_t H5O_close(H5O_loc_t *loc, hbool_t *file_closed/*out*/); H5_DLL int H5O_link(const H5O_loc_t *loc, int adjust); @@ -888,6 +898,9 @@ H5_DLL hid_t H5O_open_name(const H5G_loc_t *loc, const char *name, hbool_t app_r H5_DLL herr_t H5O_get_nlinks(const H5O_loc_t *loc, hsize_t *nlinks); H5_DLL void *H5O_obj_create(H5F_t *f, H5O_type_t obj_type, void *crt_info, H5G_loc_t *obj_loc); H5_DLL haddr_t H5O_get_oh_addr(const H5O_t *oh); +H5_DLL uint8_t H5O_get_oh_flags(const H5O_t *oh); +H5_DLL time_t H5O_get_oh_mtime(const H5O_t *oh); +H5_DLL uint8_t H5O_get_oh_version(const H5O_t *oh); H5_DLL herr_t H5O_get_rc_and_type(const H5O_loc_t *oloc, unsigned *rc, H5O_type_t *otype); H5_DLL H5AC_proxy_entry_t *H5O_get_proxy(const H5O_t *oh); diff --git a/src/H5Opublic.h b/src/H5Opublic.h index 3a34fd2..cbccc7a 100644 --- a/src/H5Opublic.h +++ b/src/H5Opublic.h @@ -198,6 +198,20 @@ H5_DLL herr_t H5Oenable_mdc_flushes(hid_t object_id); H5_DLL herr_t H5Oare_mdc_flushes_disabled(hid_t object_id, hbool_t *are_disabled); /* Future function prototypes to be deprecated in next version */ +H5_DLL herr_t H5Oget_info(hid_t loc_id, H5O_info_t *oinfo); +H5_DLL herr_t H5Oget_info_by_name(hid_t loc_id, const char *name, H5O_info_t *oinfo, + hid_t lapl_id); +H5_DLL herr_t H5Oget_info_by_idx(hid_t loc_id, const char *group_name, + H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, + hid_t lapl_id); + +H5_DLL herr_t H5Ovisit(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, + H5O_iterate_t op, void *op_data); +H5_DLL herr_t H5Ovisit_by_name(hid_t loc_id, const char *obj_name, + H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op, + void *op_data, hid_t lapl_id); + +/* Compatibility function prototypes to replace non-versioned function for use by macro in next version */ H5_DLL herr_t H5Oget_info1(hid_t loc_id, H5O_info_t *oinfo); H5_DLL herr_t H5Oget_info_by_name1(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t lapl_id); @@ -62,8 +62,8 @@ * Purpose: Control the loading of dynamic plugin types. * * The plugin_control_mask parameter is a bitfield that controls - * whether certain classes of plugins (e.g.: filters, - * VOL drivers) will be loaded by the library. + * whether certain classes of plugins (e.g.: filters) + * will be loaded by the library. * * plugin bit = 0, will prevent the use of that dynamic plugin type. * plugin bit = 1, will allow the use of that dynamic plugin type. @@ -101,8 +101,7 @@ done: * Function: H5PLget_loading_state * * Purpose: Get the bitmask that controls whether certain classes - * of plugins (e.g.: filters, VOL drivers) will be loaded - * by the library. + * of plugins (e.g.: filters) will be loaded by the library. * * Zero if all plugin types are disabled * Negative if all plugin types are enabled diff --git a/src/H5PLint.c b/src/H5PLint.c index b190746..8b649d2 100644 --- a/src/H5PLint.c +++ b/src/H5PLint.c @@ -66,7 +66,7 @@ hbool_t H5_PKG_INIT_VAR = FALSE; /*******************/ /* Bitmask that controls whether classes of plugins - * (e.g.: filters, VOL drivers) can be loaded. + * (e.g.: filters) can be loaded. */ static unsigned int H5PL_plugin_control_mask_g = H5PL_ALL_PLUGIN; diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c index d995b1e..6211b5b 100644 --- a/src/H5Pdcpl.c +++ b/src/H5Pdcpl.c @@ -119,6 +119,11 @@ #define H5D_CRT_EXT_FILE_LIST_COPY H5P__dcrt_ext_file_list_copy #define H5D_CRT_EXT_FILE_LIST_CMP H5P__dcrt_ext_file_list_cmp #define H5D_CRT_EXT_FILE_LIST_CLOSE H5P__dcrt_ext_file_list_close +/* Definitions for dataset object header minimization */ +#define H5D_CRT_MIN_DSET_HDR_SIZE_SIZE sizeof(hbool_t) +#define H5D_CRT_MIN_DSET_HDR_SIZE_DEF FALSE +#define H5D_CRT_MIN_DSET_HDR_SIZE_ENC H5P__encode_hbool_t +#define H5D_CRT_MIN_DSET_HDR_SIZE_DEC H5P__decode_hbool_t /******************/ @@ -211,6 +216,7 @@ static const H5O_layout_t H5D_def_layout_g = H5D_CRT_LAYOUT_DEF; /* Defau static const H5O_fill_t H5D_def_fill_g = H5D_CRT_FILL_VALUE_DEF; /* Default fill value */ static const unsigned H5D_def_alloc_time_state_g = H5D_CRT_ALLOC_TIME_STATE_DEF; /* Default allocation time state */ static const H5O_efl_t H5D_def_efl_g = H5D_CRT_EXT_FILE_LIST_DEF; /* Default external file list */ +static const unsigned H5O_ohdr_min_g = H5D_CRT_MIN_DSET_HDR_SIZE_DEF; /* Default object header minimization */ /* Defaults for each type of layout */ #ifdef H5_HAVE_C99_DESIGNATED_INITIALIZER @@ -270,6 +276,12 @@ H5P__dcrt_reg_prop(H5P_genclass_t *pclass) H5D_CRT_EXT_FILE_LIST_DEL, H5D_CRT_EXT_FILE_LIST_COPY, H5D_CRT_EXT_FILE_LIST_CMP, H5D_CRT_EXT_FILE_LIST_CLOSE) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + /* Register the object header minimization property */ + if(H5P_register_real(pclass, H5D_CRT_MIN_DSET_HDR_SIZE_NAME, H5D_CRT_MIN_DSET_HDR_SIZE_SIZE, &H5O_ohdr_min_g, + NULL, NULL, NULL, H5D_CRT_MIN_DSET_HDR_SIZE_ENC, H5D_CRT_MIN_DSET_HDR_SIZE_DEC, + NULL, NULL, NULL, NULL) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__dcrt_reg_prop() */ @@ -3754,3 +3766,95 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_fill_time() */ + +/*----------------------------------------------------------------------------- + * Function: H5Pget_dset_no_attrs_hint + * + * Purpose: + * + * Access the flag for whether or not datasets created by the given dcpl + * will be created with a "minimized" object header. + * + * Return: + * + * Failure: Negative value (FAIL) + * Success: Non-negative value (SUCCEED) + * + * Programmer: Jacob Smith + * 2018 August 14 + * + * Modifications: None. + * + *----------------------------------------------------------------------------- + */ +herr_t +H5Pget_dset_no_attrs_hint(hid_t dcpl_id, hbool_t *minimize) +{ + hbool_t setting = FALSE; + H5P_genplist_t *plist = NULL; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_API(FAIL) + H5TRACE2("e", "i*b", dcpl_id, minimize); + + if(NULL == minimize) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "receiving pointer cannot be NULL") + + plist = H5P_object_verify(dcpl_id, H5P_DATASET_CREATE); + if(NULL == plist) + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") + + if(H5P_peek(plist, H5D_CRT_MIN_DSET_HDR_SIZE_NAME, &setting) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get dset oh minimize flag value") + + *minimize = setting; + +done: + FUNC_LEAVE_API(ret_value) +} /* H5Pget_dset_no_attrs_hint() */ + + +/*----------------------------------------------------------------------------- + * Function: H5Pset_dset_no_attrs_hint + * + * Purpose: + * + * Set the dcpl to minimize (or explicitly to not minimized) dataset object + * headers upon creation. + * + * Return: + * + * Failure: Negative value (FAIL) + * Success: Non-negative value (SUCCEED) + * + * Programmer: Jacob Smith + * 2018 August 14 + * + * Modifications: None. + * + *----------------------------------------------------------------------------- + */ +herr_t +H5Pset_dset_no_attrs_hint(hid_t dcpl_id, hbool_t minimize) +{ + H5P_genplist_t *plist = NULL; + hbool_t prev_set = FALSE; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_API(FAIL) + H5TRACE2("e", "ib", dcpl_id, minimize); + + plist = H5P_object_verify(dcpl_id, H5P_DATASET_CREATE); + if(NULL == plist) + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") + + if(H5P_peek(plist, H5D_CRT_MIN_DSET_HDR_SIZE_NAME, &prev_set) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get extant dset oh minimize flag value") + + if(H5P_poke(plist, H5D_CRT_MIN_DSET_HDR_SIZE_NAME, &minimize) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't get dset oh minimize flag value") + +done: + FUNC_LEAVE_API(ret_value) +} /* H5Pset_dset_no_attrs_hint() */ + diff --git a/src/H5Pdxpl.c b/src/H5Pdxpl.c index dcfe89f..1c97589 100644 --- a/src/H5Pdxpl.c +++ b/src/H5Pdxpl.c @@ -2017,6 +2017,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_mpio_actual_io_mode() */ + /*------------------------------------------------------------------------- * Function: H5Pget_mpio_no_collective_cause * @@ -2053,8 +2054,6 @@ H5Pget_mpio_no_collective_cause(hid_t plist_id, uint32_t *local_no_collective_ca done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_mpio_no_collective_cause() */ - - #endif /* H5_HAVE_PARALLEL */ diff --git a/src/H5Pfapl.c b/src/H5Pfapl.c index c94fda1..e5a0a63 100644 --- a/src/H5Pfapl.c +++ b/src/H5Pfapl.c @@ -131,10 +131,11 @@ * property only used by h5repart */ #define H5F_ACS_FAMILY_NEWSIZE_SIZE sizeof(hsize_t) #define H5F_ACS_FAMILY_NEWSIZE_DEF 0 -/* Definition for whether to convert family to sec2 driver. It's private - * property only used by h5repart */ -#define H5F_ACS_FAMILY_TO_SEC2_SIZE sizeof(hbool_t) -#define H5F_ACS_FAMILY_TO_SEC2_DEF FALSE +/* Definition for whether to convert family to a single-file driver. + * It's a private property only used by h5repart. + */ +#define H5F_ACS_FAMILY_TO_SINGLE_SIZE sizeof(hbool_t) +#define H5F_ACS_FAMILY_TO_SINGLE_DEF FALSE /* Definition for data type in multi file driver */ #define H5F_ACS_MULTI_TYPE_SIZE sizeof(H5FD_mem_t) #define H5F_ACS_MULTI_TYPE_DEF H5FD_MEM_DEFAULT @@ -368,7 +369,7 @@ static const unsigned H5F_def_gc_ref_g = H5F_ACS_GARBG_COLCT_REF_DEF; static const H5F_close_degree_t H5F_def_close_degree_g = H5F_CLOSE_DEGREE_DEF; /* Default file close degree */ static const hsize_t H5F_def_family_offset_g = H5F_ACS_FAMILY_OFFSET_DEF; /* Default offset for family VFD */ static const hsize_t H5F_def_family_newsize_g = H5F_ACS_FAMILY_NEWSIZE_DEF; /* Default size of new files for family VFD */ -static const hbool_t H5F_def_family_to_sec2_g = H5F_ACS_FAMILY_TO_SEC2_DEF; /* Default ?? for family VFD */ +static const hbool_t H5F_def_family_to_single_g = H5F_ACS_FAMILY_TO_SINGLE_DEF; /* Default ?? for family VFD */ static const H5FD_mem_t H5F_def_mem_type_g = H5F_ACS_MULTI_TYPE_DEF; /* Default file space type for multi VFD */ static const H5F_libver_t H5F_def_libver_low_bound_g = H5F_ACS_LIBVER_LOW_BOUND_DEF; /* Default setting for "low" bound of format version */ @@ -503,9 +504,9 @@ H5P__facc_reg_prop(H5P_genclass_t *pclass) NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - /* Register the private property of whether convert family to sec2 driver. It's used by h5repart only. */ + /* Register the private property of whether convert family to a single-file driver. It's used by h5repart only. */ /* (Note: this property should not have an encode/decode callback -QAK) */ - if(H5P_register_real(pclass, H5F_ACS_FAMILY_TO_SEC2_NAME, H5F_ACS_FAMILY_TO_SEC2_SIZE, &H5F_def_family_to_sec2_g, + if(H5P_register_real(pclass, H5F_ACS_FAMILY_TO_SINGLE_NAME, H5F_ACS_FAMILY_TO_SINGLE_SIZE, &H5F_def_family_to_single_g, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") diff --git a/src/H5Ppublic.h b/src/H5Ppublic.h index 9f7fdab..5d6dea8 100644 --- a/src/H5Ppublic.h +++ b/src/H5Ppublic.h @@ -165,7 +165,8 @@ typedef enum H5D_mpio_no_collective_cause_t { H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES = 0x10, H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET = 0x20, H5D_MPIO_PARALLEL_FILTERED_WRITES_DISABLED = 0x40, - H5D_MPIO_NO_COLLECTIVE_MAX_CAUSE = 0x80 + H5D_MPIO_ERROR_WHILE_CHECKING_COLLECTIVE_POSSIBLE = 0x80, + H5D_MPIO_NO_COLLECTIVE_MAX_CAUSE = 0x100 } H5D_mpio_no_collective_cause_t; /********************/ @@ -407,6 +408,8 @@ H5_DLL herr_t H5Pget_alloc_time(hid_t plist_id, H5D_alloc_time_t H5_DLL herr_t H5Pset_fill_time(hid_t plist_id, H5D_fill_time_t fill_time); H5_DLL herr_t H5Pget_fill_time(hid_t plist_id, H5D_fill_time_t *fill_time/*out*/); +H5_DLL herr_t H5Pget_dset_no_attrs_hint(hid_t dcpl_id, hbool_t *minimize); +H5_DLL herr_t H5Pset_dset_no_attrs_hint(hid_t dcpl_id, hbool_t minimize); /* Dataset access property list (DAPL) routines */ H5_DLL herr_t H5Pset_chunk_cache(hid_t dapl_id, size_t rdcc_nslots, @@ -137,7 +137,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ H5RS_str_t * -H5RS_wrap(char *s) +H5RS_wrap(const char *s) { H5RS_str_t *ret_value; /* Return value */ @@ -148,7 +148,7 @@ H5RS_wrap(char *s) HGOTO_ERROR(H5E_RS, H5E_NOSPACE, NULL, "memory allocation failed") /* Set the internal fields */ - ret_value->s = s; + ret_value->s = (char *)s; ret_value->wrapped = 1; ret_value->n = 1; diff --git a/src/H5RSprivate.h b/src/H5RSprivate.h index f69624a..1d26a18 100644 --- a/src/H5RSprivate.h +++ b/src/H5RSprivate.h @@ -44,7 +44,7 @@ typedef struct H5RS_str_t H5RS_str_t; /* Private routines */ /********************/ H5_DLL H5RS_str_t *H5RS_create(const char *s); -H5_DLL H5RS_str_t *H5RS_wrap(char *s); +H5_DLL H5RS_str_t *H5RS_wrap(const char *s); H5_DLL H5RS_str_t *H5RS_own(char *s); H5_DLL herr_t H5RS_decr(H5RS_str_t *rs); H5_DLL herr_t H5RS_incr(H5RS_str_t *rs); diff --git a/src/H5Rint.c b/src/H5Rint.c index 12b4878..1465ee1 100644 --- a/src/H5Rint.c +++ b/src/H5Rint.c @@ -230,7 +230,7 @@ H5R__create(void *_ref, H5G_loc_t *loc, const char *name, H5R_type_t ref_type, hbool_t obj_found = FALSE; /* Object location found */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE HDassert(_ref); HDassert(loc); @@ -335,7 +335,7 @@ done: if (obj_found) H5G_loc_free(&obj_loc); - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5R__create() */ @@ -381,7 +381,7 @@ H5R__dereference(H5F_t *file, hid_t oapl_id, H5R_type_t ref_type, H5O_type_t obj_type; /* Type of object */ hid_t ret_value = H5I_INVALID_HID; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE HDassert(_ref); HDassert(ref_type > H5R_BADTYPE && ref_type < H5R_MAXTYPE); @@ -504,7 +504,7 @@ H5R__dereference(H5F_t *file, hid_t oapl_id, H5R_type_t ref_type, } /* end switch */ done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5R__dereference() */ @@ -538,7 +538,7 @@ H5R__get_region(H5F_t *file, const void *_ref) uint8_t *buf = NULL; /* Buffer to store serialized selection in */ H5S_t *ret_value; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE HDassert(_ref); HDassert(file); @@ -573,7 +573,7 @@ done: if(buf) H5MM_xfree(buf); - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5R__get_region() */ @@ -607,7 +607,7 @@ H5R__get_obj_type(H5F_t *file, H5R_type_t ref_type, const void *_ref, unsigned rc; /* Reference count of object */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE HDassert(file); HDassert(_ref); @@ -662,7 +662,7 @@ H5R__get_obj_type(H5F_t *file, H5R_type_t ref_type, const void *_ref, HGOTO_ERROR(H5E_REFERENCE, H5E_LINKCOUNT, FAIL, "dereferencing deleted object") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5R__get_obj_type() */ @@ -701,7 +701,7 @@ H5R__get_name(H5F_t *f, hid_t id, H5R_type_t ref_type, const void *_ref, H5O_loc_t oloc; /* Object location describing object for reference */ ssize_t ret_value = -1; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Check args */ HDassert(f); @@ -763,6 +763,6 @@ done: if (file_id > 0 && H5I_dec_ref(file_id) < 0) HDONE_ERROR(H5E_REFERENCE, H5E_CANTDEC, (-1), "can't decrement ref count of temp ID") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5R__get_name() */ diff --git a/src/H5Smpio.c b/src/H5Smpio.c index 2bd275a..935d279 100644 --- a/src/H5Smpio.c +++ b/src/H5Smpio.c @@ -879,7 +879,14 @@ H5S_mpio_hyper_type(const H5S_t *space, size_t elmt_size, HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code) } - MPI_Type_extent (inner_type, &inner_extent); + /* As of version 4.0, OpenMPI now turns off MPI-1 API calls by default, + * so we're using the MPI-2 version even though we don't need the lb + * value. + */ + { + MPI_Aint unused_lb_arg; + MPI_Type_get_extent(inner_type, &unused_lb_arg, &inner_extent); + } stride_in_bytes = inner_extent * (MPI_Aint)d[i].strid; /* If the element count is larger than what a 32 bit integer can hold, @@ -1500,7 +1507,14 @@ static herr_t H5S_mpio_create_large_type (hsize_t num_elements, } } - MPI_Type_extent (old_type, &old_extent); + /* As of version 4.0, OpenMPI now turns off MPI-1 API calls by default, + * so we're using the MPI-2 version even though we don't need the lb + * value. + */ + { + MPI_Aint unused_lb_arg; + MPI_Type_get_extent(old_type, &unused_lb_arg, &old_extent); + } /* Set up the arguments for MPI_Type_struct constructor */ type[0] = outer_type; @@ -301,8 +301,8 @@ static herr_t H5T__unregister(H5T_pers_t pers, const char *name, H5T_t *src, static htri_t H5T__compiler_conv(H5T_t *src, H5T_t *dst); static herr_t H5T__set_size(H5T_t *dt, size_t size); static herr_t H5T__close_cb(H5T_t *dt); -static H5T_path_t *H5T__path_find_real(const H5T_t *src, const H5T_t *dst, - const char *name, H5T_conv_func_t *conv); +static H5T_path_t *H5T__path_find_real(const H5T_t *src, const H5T_t *dst, const char *name, H5T_conv_func_t *conv); +static hbool_t H5T__detect_reg_ref(const H5T_t *dt); /*****************************/ @@ -3714,7 +3714,7 @@ H5T__close_cb(H5T_t *dt) { herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* check args */ HDassert(dt && dt->shared); @@ -3724,7 +3724,7 @@ H5T__close_cb(H5T_t *dt) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCLOSEOBJ, FAIL, "can't close datatype"); done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5T__close_cb() */ @@ -5517,6 +5517,111 @@ done: /*------------------------------------------------------------------------- + * Function: H5T_detect_reg_ref + * + * Purpose: Check whether a datatype contains (or is) a region reference + * datatype. + * + * Return: TRUE (1) or FALSE (0) on success + * (Can't fail) + * + * Programmer: Quincey Koziol + * Saturday, January 5, 2019 + * + *------------------------------------------------------------------------- + */ +static hbool_t +H5T__detect_reg_ref(const H5T_t *dt) +{ + unsigned u; /* Local index variable */ + hbool_t ret_value = FALSE; /* Return value */ + + FUNC_ENTER_STATIC_NOERR + + /* Sanity checks */ + HDassert(dt); + + /* Check if this datatype is a region reference */ + if(H5T_REFERENCE == dt->shared->type && H5R_DATASET_REGION == dt->shared->u.atomic.u.r.rtype) + HGOTO_DONE(TRUE); + + /* Check for types that might have the correct type as a component */ + switch(dt->shared->type) { + case H5T_COMPOUND: + /* Iterate over all the compound datatype's fields */ + for(u = 0; u < dt->shared->u.compnd.nmembs; u++) + /* Recurse on field's datatype */ + if(H5T__detect_reg_ref(dt->shared->u.compnd.memb[u].type)) + HGOTO_DONE(TRUE); + break; + + case H5T_ARRAY: + case H5T_VLEN: + case H5T_ENUM: + HGOTO_DONE(H5T__detect_reg_ref(dt->shared->parent)); + break; + + case H5T_NO_CLASS: + case H5T_INTEGER: + case H5T_FLOAT: + case H5T_TIME: + case H5T_STRING: + case H5T_BITFIELD: + case H5T_OPAQUE: + case H5T_REFERENCE: + case H5T_NCLASSES: + default: + break; + } /* end if */ + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5T__detect_reg_ref() */ + + +/*------------------------------------------------------------------------- + * Function: H5T_is_vl_storage + * + * Purpose: Check if a datatype will be stored in a variable-length form. + * + * Notes: Currently, only variable-length string & sequences and region + * references are stored in a variable-length form. + * + * Return: + * One of two values on success: + * TRUE - If the datatype will be stored in a variable-length form + * FALSE - If the datatype will NOT be stored in a variable-length form + * <0 is returned on failure + * + * Programmer: Quincey Koziol + * Saturday, January 5, 2019 + * + *------------------------------------------------------------------------- + */ +htri_t +H5T_is_vl_storage(const H5T_t *dt) +{ + htri_t ret_value = FALSE; + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity check */ + HDassert(dt); + + /* VL and region reference datatypes are stored in variable-length form */ + if(H5T_detect_class(dt, H5T_VLEN, FALSE)) + ret_value = TRUE; + else if(H5T_detect_class(dt, H5T_REFERENCE, FALSE)) + ret_value = H5T__detect_reg_ref(dt); + else + ret_value = FALSE; + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5T_is_vl_storage() */ + + +/*------------------------------------------------------------------------- * Function: H5T_upgrade_version_cb * * Purpose: H5T__visit callback to Upgrade the version of a datatype diff --git a/src/H5Tcommit.c b/src/H5Tcommit.c index 1719f8f..649bd2e 100644 --- a/src/H5Tcommit.c +++ b/src/H5Tcommit.c @@ -59,8 +59,6 @@ static herr_t H5T__commit_anon(H5F_t *file, H5T_t *type, hid_t tcpl_id); static hid_t H5T__get_create_plist(const H5T_t *type); static H5T_t *H5T__open_oid(const H5G_loc_t *loc); -static herr_t H5T__flush(H5T_t *dt, hid_t type_id); -static herr_t H5T__refresh(H5T_t *dt, hid_t type_id); /*********************/ @@ -165,7 +163,7 @@ H5T__commit_named(const H5G_loc_t *loc, const char *name, H5T_t *dt, H5T_state_t old_state; /* The state of the datatype before H5T__commit. */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Sanity checks */ HDassert(loc); @@ -219,7 +217,7 @@ done: } /* end if */ } /* end if */ - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5T__commit_named() */ @@ -296,7 +294,7 @@ H5T__commit_anon(H5F_t *file, H5T_t *type, hid_t tcpl_id) H5O_loc_t *oloc; /* Object location for datatype */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* Sanity checks */ HDassert(file); @@ -318,7 +316,7 @@ H5T__commit_anon(H5F_t *file, H5T_t *type, hid_t tcpl_id) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTDEC, FAIL, "unable to decrement refcount on newly created object") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* H5T__commit_anon() */ @@ -667,8 +665,8 @@ H5Tflush(hid_t type_id) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "can't set access property list info") /* Flush metadata for named datatype */ - if(H5T__flush(dt, type_id) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTFLUSH, FAIL, "unable to flush datatype") + if(H5O_flush_common(&dt->oloc, type_id) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTFLUSH, FAIL, "unable to flush datatype and object flush callback") done: FUNC_LEAVE_API(ret_value) @@ -707,7 +705,7 @@ H5Trefresh(hid_t type_id) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "can't set access property list info") /* Call private function to refresh datatype object */ - if((H5T__refresh(dt, type_id)) < 0) + if((H5O_refresh_metadata(type_id, dt->oloc)) < 0) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTLOAD, FAIL, "unable to refresh datatype") done: @@ -742,7 +740,7 @@ H5T__get_create_plist(const H5T_t *type) hid_t new_tcpl_id = FAIL; /* New datatype creation property list */ hid_t ret_value = FAIL; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_STATIC /* Sanity check */ HDassert(type); @@ -770,7 +768,7 @@ done: if(H5I_dec_app_ref(new_tcpl_id) < 0) HDONE_ERROR(H5E_DATATYPE, H5E_CANTDEC, FAIL, "unable to close temporary object") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5T__get_create_plist() */ @@ -798,7 +796,7 @@ H5T__open_name(const H5G_loc_t *loc, const char *name) hbool_t obj_found = FALSE; /* Object at 'name' found */ H5T_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(loc); @@ -836,7 +834,7 @@ done: if(H5G_loc_free(&type_loc) < 0) HDONE_ERROR(H5E_DATATYPE, H5E_CANTRELEASE, NULL, "can't free location") - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5T__open_name() */ @@ -1040,73 +1038,3 @@ H5T_update_shared(H5T_t *dt) FUNC_LEAVE_NOAPI(SUCCEED) } /* H5T_update_shared() */ - -/*------------------------------------------------------------------------- - * Function: H5T__flush - * - * Purpose: Internal routine to flushes a named datatype to disk. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 18, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5T__flush(H5T_t *dt, hid_t type_id) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Sanity check */ - HDassert(dt); - - /* To flush metadata and invoke flush callback if there is */ - if(H5O_flush_common(&dt->oloc, type_id) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTFLUSH, FAIL, "unable to flush datatype and object flush callback") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* H5T__flush */ - - -/*------------------------------------------------------------------------- - * Function: H5T__refresh - * - * Purpose: Internal routine to refresh a named datatype. - * - * Note: This routine is needed so that there's a non-API routine - * that can set up VOL / SWMR info (which need a DXPL). - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * December 18, 2017 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5T__refresh(H5T_t *dt, hid_t type_id) -{ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_STATIC_VOL - - /* Sanity check */ - HDassert(dt); - - /* Call private function to refresh datatype object */ - if((H5O_refresh_metadata(type_id, dt->oloc)) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTLOAD, FAIL, "unable to refresh datatype") - -done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* H5T__refresh */ - diff --git a/src/H5Torder.c b/src/H5Torder.c index 877316d..462b732 100644 --- a/src/H5Torder.c +++ b/src/H5Torder.c @@ -100,11 +100,11 @@ H5Tget_order(hid_t type_id) /* Check args */ if(NULL == (dt = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE))) - HGOTO_ERROR(H5E_DATATYPE, H5E_BADTYPE, H5T_ORDER_ERROR, "not a datatype") + HGOTO_ERROR(H5E_DATATYPE, H5E_BADTYPE, H5T_ORDER_ERROR, "not a datatype") /* Get order */ if(H5T_ORDER_ERROR == (ret_value = H5T_get_order(dt))) - HGOTO_ERROR(H5E_DATATYPE, H5E_UNSUPPORTED, H5T_ORDER_ERROR, "cant't get order for specified datatype") + HGOTO_ERROR(H5E_DATATYPE, H5E_UNSUPPORTED, H5T_ORDER_ERROR, "can't get order for specified datatype") done: FUNC_LEAVE_API(ret_value) diff --git a/src/H5Tprivate.h b/src/H5Tprivate.h index 89cdcfd..aff3f6d 100644 --- a/src/H5Tprivate.h +++ b/src/H5Tprivate.h @@ -138,6 +138,7 @@ H5_DLL herr_t H5T_set_version(H5F_t *f, H5T_t *dt); H5_DLL herr_t H5T_patch_file(H5T_t *dt, H5F_t *f); H5_DLL herr_t H5T_patch_vlen_file(H5T_t *dt, H5F_t *f); H5_DLL htri_t H5T_is_variable_str(const H5T_t *dt); +H5_DLL htri_t H5T_is_vl_storage(const H5T_t *dt); /* Reference specific functions */ H5_DLL H5R_type_t H5T_get_ref_type(const H5T_t *dt); @@ -1548,7 +1548,7 @@ done: * * Purpose: Given source and destination buffers in memory (SRC & DST) * copy sequences of from the source buffer into the destination - * buffer. Each set of sequnces has an array of lengths, an + * buffer. Each set of sequences has an array of lengths, an * array of offsets, the maximum number of sequences and the * current sequence to start at in the sequence. * @@ -387,9 +387,9 @@ H5Z__unregister(H5Z_filter_t filter_id) H5Z_object_t object; /* Object to pass to callbacks */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_VOL + FUNC_ENTER_PACKAGE - HDassert(filter_id>=0 && filter_id<=H5Z_FILTER_MAX); + HDassert(filter_id >= 0 && filter_id <= H5Z_FILTER_MAX); /* Is the filter already registered? */ for (filter_index = 0; filter_index < H5Z_table_used_g; filter_index++) @@ -434,7 +434,7 @@ H5Z__unregister(H5Z_filter_t filter_id) H5Z_table_used_g--; done: - FUNC_LEAVE_NOAPI_VOL(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5Z__unregister() */ @@ -603,7 +603,7 @@ H5Z__flush_file_cb(void *obj_ptr, hid_t H5_ATTR_UNUSED obj_id, void *key) /* Sanity check for collectively calling H5Zunregister, if requested */ /* (Sanity check assumes that a barrier on one file's comm * is sufficient (i.e. that there aren't different comms for - * different files). -QAK, 2018/02/14 + * different files). -QAK, 2018/02/14) */ if(H5_coll_api_sanity_check_g && !object->sanity_checked) { MPI_Comm mpi_comm; /* File's communicator */ diff --git a/src/H5config.h.in b/src/H5config.h.in index ce444ed..738e94e 100644 --- a/src/H5config.h.in +++ b/src/H5config.h.in @@ -15,6 +15,10 @@ /* Define if dev_t is a scalar */ #undef DEV_T_IS_SCALAR +/* Define if your system is IBM ppc64le and cannot convert some long double + values correctly. */ +#undef DISABLE_SOME_LDOUBLE_CONV + /* Define to dummy `main' function (if any) required to link to the Fortran libraries. */ #undef FC_DUMMY_MAIN @@ -238,6 +242,9 @@ /* Define if we have parallel support */ #undef HAVE_PARALLEL +/* Define if both pread and pwrite exist. */ +#undef HAVE_PREADWRITE + /* Define to 1 if you have the <pthread.h> header file. */ #undef HAVE_PTHREAD_H @@ -428,9 +435,6 @@ /* Define to enable internal memory allocation sanity checking. */ #undef MEMORY_ALLOC_SANITY_CHECK -/* Define if the metadata trace file code is to be compiled in */ -#undef METADATA_TRACE_FILE - /* Define if we can violate pointer alignment restrictions */ #undef NO_ALIGNMENT_RESTRICTIONS @@ -542,6 +546,9 @@ /* The size of `ssize_t', as computed by sizeof. */ #undef SIZEOF_SSIZE_T +/* The size of `time_t', as computed by sizeof. */ +#undef SIZEOF_TIME_T + /* The size of `uint16_t', as computed by sizeof. */ #undef SIZEOF_UINT16_T diff --git a/src/H5err.txt b/src/H5err.txt index 19374cd..aa172e8 100644 --- a/src/H5err.txt +++ b/src/H5err.txt @@ -180,7 +180,8 @@ MINOR, CACHE, H5E_CANTRESIZE, Unable to resize a metadata cache entry MINOR, CACHE, H5E_CANTDEPEND, Unable to create a flush dependency MINOR, CACHE, H5E_CANTUNDEPEND, Unable to destroy a flush dependency MINOR, CACHE, H5E_CANTNOTIFY, Unable to notify object about action -MINOR, CACHE, H5E_LOGFAIL, Failure in the cache logging framework +MINOR, CACHE, H5E_LOGGING, Failure in the cache logging framework +MINOR, CACHE, H5E_LOGFAIL, old H5E_LOGGING_g (maintained for binary compatibility) MINOR, CACHE, H5E_CANTCORK, Unable to cork an object MINOR, CACHE, H5E_CANTUNCORK, Unable to uncork an object diff --git a/src/H5private.h b/src/H5private.h index 8974e46..4f5323a 100644 --- a/src/H5private.h +++ b/src/H5private.h @@ -1148,6 +1148,9 @@ typedef off_t h5_stat_size_t; #ifndef HDpowf #define HDpowf(X,Y) powf(X,Y) #endif /* HDpowf */ +#ifndef HDpread + #define HDpread(F,B,C,O) pread(F,B,C,O) +#endif /* HDpread */ #ifndef HDprintf #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__) #endif /* HDprintf */ @@ -1160,6 +1163,9 @@ typedef off_t h5_stat_size_t; #ifndef HDputs #define HDputs(S) puts(S) #endif /* HDputs */ +#ifndef HDpwrite + #define HDpwrite(F,B,C,O) pwrite(F,B,C,O) +#endif /* HDpwrite */ #ifndef HDqsort #define HDqsort(M,N,Z,F) qsort(M,N,Z,F) #endif /* HDqsort*/ @@ -2199,12 +2205,6 @@ H5_DLL herr_t H5CX_pop(void); H5_PUSH_FUNC \ if(H5_PKG_INIT_VAR || !H5_TERM_GLOBAL) { -/* Use this macro for all package-level functions that are VOL entry-points */ -#define FUNC_ENTER_PACKAGE_VOL { \ - FUNC_ENTER_COMMON(H5_IS_PKG(FUNC)); \ - H5_PUSH_FUNC \ - if(H5_PKG_INIT_VAR || !H5_TERM_GLOBAL) { - /* Use this macro for package-level functions which propgate errors, but don't issue them */ #define FUNC_ENTER_PACKAGE_NOERR { \ FUNC_ENTER_COMMON_NOERR(H5_IS_PKG(FUNC)); \ @@ -2221,29 +2221,12 @@ H5_DLL herr_t H5CX_pop(void); H5_PUSH_FUNC \ if(H5_PKG_INIT_VAR || !H5_TERM_GLOBAL) { -/* Use the following macro as replacement for the FUNC_ENTER_PACKAGE - * macro when the function needs to set up a metadata tag and is also a - * VOL entry-point. */ -#define FUNC_ENTER_PACKAGE_VOL_TAG(tag) { \ - haddr_t prev_tag = HADDR_UNDEF; \ - \ - FUNC_ENTER_COMMON(H5_IS_PKG(FUNC)); \ - H5AC_tag(tag, &prev_tag); \ - H5_PUSH_FUNC \ - if(H5_PKG_INIT_VAR || !H5_TERM_GLOBAL) { - /* Use this macro for all "normal" staticly-scoped functions */ #define FUNC_ENTER_STATIC { \ FUNC_ENTER_COMMON(H5_IS_PKG(FUNC)); \ H5_PUSH_FUNC \ if(H5_PKG_INIT_VAR || !H5_TERM_GLOBAL) { -/* Use this macro for all "normal" staticly-scoped functions that are VOL entry-points */ -#define FUNC_ENTER_STATIC_VOL { \ - FUNC_ENTER_COMMON(H5_IS_PKG(FUNC)); \ - H5_PUSH_FUNC \ - if(H5_PKG_INIT_VAR || !H5_TERM_GLOBAL) { - /* Use this macro for staticly-scoped functions which propgate errors, but don't issue them */ #define FUNC_ENTER_STATIC_NOERR { \ FUNC_ENTER_COMMON_NOERR(H5_IS_PKG(FUNC)); \ @@ -2266,17 +2249,6 @@ H5_DLL herr_t H5CX_pop(void); H5_PUSH_FUNC \ if(H5_PKG_INIT_VAR || !H5_TERM_GLOBAL) { -/* Use the following macro as replacement for the FUNC_ENTER_STATIC - * macro when the function needs to set up a metadata tag and is a VOL - * entry-point. */ -#define FUNC_ENTER_STATIC_VOL_TAG(tag) { \ - haddr_t prev_tag = HADDR_UNDEF; \ - \ - FUNC_ENTER_COMMON(H5_IS_PKG(FUNC)); \ - H5AC_tag(tag, &prev_tag); \ - H5_PUSH_FUNC \ - if(H5_PKG_INIT_VAR || !H5_TERM_GLOBAL) { - /*------------------------------------------------------------------------- * Purpose: Register function exit for code profiling. This should be @@ -2331,13 +2303,6 @@ H5_DLL herr_t H5CX_pop(void); return(ret_value); \ } /*end scope from beginning of FUNC_ENTER*/ -#define FUNC_LEAVE_NOAPI_VOL(ret_value) \ - ; \ - } /*end scope from end of FUNC_ENTER*/ \ - H5_POP_FUNC \ - return(ret_value); \ -} /*end scope from beginning of FUNC_ENTER*/ - #define FUNC_LEAVE_NOAPI_VOID \ ; \ } /*end scope from end of FUNC_ENTER*/ \ @@ -2365,15 +2330,6 @@ H5_DLL herr_t H5CX_pop(void); return(ret_value); \ } /*end scope from beginning of FUNC_ENTER*/ -/* Use this macro when exiting a VOL entry-point function that set up a metadata tag */ -#define FUNC_LEAVE_NOAPI_VOL_TAG(ret_value) \ - ; \ - } /*end scope from end of FUNC_ENTER*/ \ - H5AC_tag(prev_tag, NULL); \ - H5_POP_FUNC \ - return(ret_value); \ -} /*end scope from beginning of FUNC_ENTER*/ - /****************************************/ /* Revisions to FUNC_ENTER/LEAVE Macros */ diff --git a/src/H5public.h b/src/H5public.h index 83966de..a25bed9 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -93,10 +93,10 @@ extern "C" { /* Version numbers */ #define H5_VERS_MAJOR 1 /* For major interface/format changes */ #define H5_VERS_MINOR 10 /* For minor interface/format changes */ -#define H5_VERS_RELEASE 4 /* For tweaks, bug-fixes, or development */ +#define H5_VERS_RELEASE 5 /* For tweaks, bug-fixes, or development */ #define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */ /* Empty string for real releases. */ -#define H5_VERS_INFO "HDF5 library version: 1.10.4" /* Full version string */ +#define H5_VERS_INFO "HDF5 library version: 1.10.5" /* Full version string */ #define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ H5_VERS_RELEASE) diff --git a/src/H5vers.txt b/src/H5vers.txt index 914c30e..0303bf5 100644 --- a/src/H5vers.txt +++ b/src/H5vers.txt @@ -56,11 +56,6 @@ FUNCTION: H5Ewalk; H5E_walk, H5E_error; v10, v18 FUNCTION: H5Fget_info; H5F_info; v18, v110 FUNCTION: H5Gcreate; ; v10, v18 FUNCTION: H5Gopen; ; v10, v18 -FUNCTION: H5Oget_info; ; v18, v112 -FUNCTION: H5Oget_info_by_name; ; v18, v112 -FUNCTION: H5Oget_info_by_idx; ; v18, v112 -FUNCTION: H5Ovisit; ; v18, v112 -FUNCTION: H5Ovisit_by_name; ; v18, v112 FUNCTION: H5Pget_filter; ; v10, v18 FUNCTION: H5Pget_filter_by_id; ; v16, v18 FUNCTION: H5Pinsert; ; v14, v18 diff --git a/src/H5version.h b/src/H5version.h index ef59285..34f961e 100644 --- a/src/H5version.h +++ b/src/H5version.h @@ -209,26 +209,6 @@ #define H5Gopen_vers 2 #endif /* !defined(H5Gopen_vers) */ -#if !defined(H5Oget_info_vers) - #define H5Oget_info_vers 1 -#endif /* !defined(H5Oget_info_vers) */ - -#if !defined(H5Oget_info_by_idx_vers) - #define H5Oget_info_by_idx_vers 1 -#endif /* !defined(H5Oget_info_by_idx_vers) */ - -#if !defined(H5Oget_info_by_name_vers) - #define H5Oget_info_by_name_vers 1 -#endif /* !defined(H5Oget_info_by_name_vers) */ - -#if !defined(H5Ovisit_vers) - #define H5Ovisit_vers 1 -#endif /* !defined(H5Ovisit_vers) */ - -#if !defined(H5Ovisit_by_name_vers) - #define H5Ovisit_by_name_vers 1 -#endif /* !defined(H5Ovisit_by_name_vers) */ - #if !defined(H5Pget_filter_vers) #define H5Pget_filter_vers 2 #endif /* !defined(H5Pget_filter_vers) */ @@ -341,26 +321,6 @@ #define H5Gopen_vers 2 #endif /* !defined(H5Gopen_vers) */ -#if !defined(H5Oget_info_vers) - #define H5Oget_info_vers 1 -#endif /* !defined(H5Oget_info_vers) */ - -#if !defined(H5Oget_info_by_idx_vers) - #define H5Oget_info_by_idx_vers 1 -#endif /* !defined(H5Oget_info_by_idx_vers) */ - -#if !defined(H5Oget_info_by_name_vers) - #define H5Oget_info_by_name_vers 1 -#endif /* !defined(H5Oget_info_by_name_vers) */ - -#if !defined(H5Ovisit_vers) - #define H5Ovisit_vers 1 -#endif /* !defined(H5Ovisit_vers) */ - -#if !defined(H5Ovisit_by_name_vers) - #define H5Ovisit_by_name_vers 1 -#endif /* !defined(H5Ovisit_by_name_vers) */ - #if !defined(H5Pget_filter_vers) #define H5Pget_filter_vers 2 #endif /* !defined(H5Pget_filter_vers) */ @@ -577,61 +537,6 @@ #error "H5Gopen_vers set to invalid value" #endif /* H5Gopen_vers */ -#if !defined(H5Oget_info_vers) || H5Oget_info_vers == 2 - #ifndef H5Oget_info_vers - #define H5Oget_info_vers 2 - #endif /* H5Oget_info_vers */ - #define H5Oget_info H5Oget_info2 -#elif H5Oget_info_vers == 1 - #define H5Oget_info H5Oget_info1 -#else /* H5Oget_info_vers */ - #error "H5Oget_info_vers set to invalid value" -#endif /* H5Oget_info_vers */ - -#if !defined(H5Oget_info_by_idx_vers) || H5Oget_info_by_idx_vers == 2 - #ifndef H5Oget_info_by_idx_vers - #define H5Oget_info_by_idx_vers 2 - #endif /* H5Oget_info_by_idx_vers */ - #define H5Oget_info_by_idx H5Oget_info_by_idx2 -#elif H5Oget_info_by_idx_vers == 1 - #define H5Oget_info_by_idx H5Oget_info_by_idx1 -#else /* H5Oget_info_by_idx_vers */ - #error "H5Oget_info_by_idx_vers set to invalid value" -#endif /* H5Oget_info_by_idx_vers */ - -#if !defined(H5Oget_info_by_name_vers) || H5Oget_info_by_name_vers == 2 - #ifndef H5Oget_info_by_name_vers - #define H5Oget_info_by_name_vers 2 - #endif /* H5Oget_info_by_name_vers */ - #define H5Oget_info_by_name H5Oget_info_by_name2 -#elif H5Oget_info_by_name_vers == 1 - #define H5Oget_info_by_name H5Oget_info_by_name1 -#else /* H5Oget_info_by_name_vers */ - #error "H5Oget_info_by_name_vers set to invalid value" -#endif /* H5Oget_info_by_name_vers */ - -#if !defined(H5Ovisit_vers) || H5Ovisit_vers == 2 - #ifndef H5Ovisit_vers - #define H5Ovisit_vers 2 - #endif /* H5Ovisit_vers */ - #define H5Ovisit H5Ovisit2 -#elif H5Ovisit_vers == 1 - #define H5Ovisit H5Ovisit1 -#else /* H5Ovisit_vers */ - #error "H5Ovisit_vers set to invalid value" -#endif /* H5Ovisit_vers */ - -#if !defined(H5Ovisit_by_name_vers) || H5Ovisit_by_name_vers == 2 - #ifndef H5Ovisit_by_name_vers - #define H5Ovisit_by_name_vers 2 - #endif /* H5Ovisit_by_name_vers */ - #define H5Ovisit_by_name H5Ovisit_by_name2 -#elif H5Ovisit_by_name_vers == 1 - #define H5Ovisit_by_name H5Ovisit_by_name1 -#else /* H5Ovisit_by_name_vers */ - #error "H5Ovisit_by_name_vers set to invalid value" -#endif /* H5Ovisit_by_name_vers */ - #if !defined(H5Pget_filter_vers) || H5Pget_filter_vers == 2 #ifndef H5Pget_filter_vers #define H5Pget_filter_vers 2 diff --git a/src/Makefile.am b/src/Makefile.am index a0defad..10ef8c6 100644 --- a/src/Makefile.am +++ b/src/Makefile.am @@ -40,12 +40,12 @@ DISTCLEANFILES=H5pubconf.h # library sources libhdf5_la_SOURCES= H5.c H5checksum.c H5dbg.c H5system.c H5timer.c H5trace.c \ H5A.c H5Abtree2.c H5Adense.c H5Adeprec.c H5Aint.c H5Atest.c \ - H5AC.c H5ACdbg.c H5AClog.c H5ACproxy_entry.c \ + H5AC.c H5ACdbg.c H5ACproxy_entry.c \ H5B.c H5Bcache.c H5Bdbg.c \ H5B2.c H5B2cache.c H5B2dbg.c H5B2hdr.c H5B2int.c H5B2internal.c \ H5B2leaf.c H5B2stat.c H5B2test.c \ - H5C.c H5Cdbg.c H5Cepoch.c H5Cimage.c H5Clog.c H5Cprefetched.c \ - H5Cquery.c H5Ctag.c H5Ctest.c \ + H5C.c H5Cdbg.c H5Cepoch.c H5Cimage.c H5Clog.c H5Clog_json.c H5Clog_trace.c \ + H5Cprefetched.c H5Cquery.c H5Ctag.c H5Ctest.c \ H5CS.c \ H5CX.c \ H5D.c H5Dbtree.c H5Dbtree2.c H5Dchunk.c H5Dcompact.c H5Dcontig.c H5Ddbg.c \ @@ -134,7 +134,7 @@ include_HEADERS = hdf5.h H5api_adpt.h H5overflow.h H5pubconf.h H5public.h H5vers H5Epubgen.h H5Epublic.h H5Fpublic.h \ H5FDpublic.h H5FDcore.h H5FDdirect.h \ H5FDfamily.h H5FDlog.h H5FDmpi.h H5FDmpio.h \ - H5FDmulti.h H5FDsec2.h H5FDstdio.h \ + H5FDmulti.h H5FDsec2.h H5FDstdio.h H5FDwindows.h \ H5Gpublic.h H5Ipublic.h H5Lpublic.h \ H5MMpublic.h H5Opublic.h H5Ppublic.h \ H5PLextern.h H5PLpublic.h \ diff --git a/src/Makefile.in b/src/Makefile.in index 7d80019..d640fc5 100644 --- a/src/Makefile.in +++ b/src/Makefile.in @@ -175,35 +175,35 @@ LTLIBRARIES = $(lib_LTLIBRARIES) libhdf5_la_LIBADD = am__libhdf5_la_SOURCES_DIST = H5.c H5checksum.c H5dbg.c H5system.c \ H5timer.c H5trace.c H5A.c H5Abtree2.c H5Adense.c H5Adeprec.c \ - H5Aint.c H5Atest.c H5AC.c H5ACdbg.c H5AClog.c \ - H5ACproxy_entry.c H5B.c H5Bcache.c H5Bdbg.c H5B2.c H5B2cache.c \ - H5B2dbg.c H5B2hdr.c H5B2int.c H5B2internal.c H5B2leaf.c \ - H5B2stat.c H5B2test.c H5C.c H5Cdbg.c H5Cepoch.c H5Cimage.c \ - H5Clog.c H5Cprefetched.c H5Cquery.c H5Ctag.c H5Ctest.c H5CS.c \ - H5CX.c H5D.c H5Dbtree.c H5Dbtree2.c H5Dchunk.c H5Dcompact.c \ - H5Dcontig.c H5Ddbg.c H5Ddeprec.c H5Dearray.c H5Defl.c \ - H5Dfarray.c H5Dfill.c H5Dint.c H5Dio.c H5Dlayout.c H5Dnone.c \ - H5Doh.c H5Dscatgath.c H5Dselect.c H5Dsingle.c H5Dtest.c \ - H5Dvirtual.c H5E.c H5Edeprec.c H5Eint.c H5EA.c H5EAcache.c \ - H5EAdbg.c H5EAdblkpage.c H5EAdblock.c H5EAhdr.c H5EAiblock.c \ - H5EAint.c H5EAsblock.c H5EAstat.c H5EAtest.c H5F.c H5Faccum.c \ - H5Fcwfs.c H5Fdbg.c H5Fdeprec.c H5Fefc.c H5Ffake.c H5Fint.c \ - H5Fio.c H5Fmount.c H5Fquery.c H5Fsfile.c H5Fspace.c H5Fsuper.c \ - H5Fsuper_cache.c H5Ftest.c H5FA.c H5FAcache.c H5FAdbg.c \ - H5FAdblock.c H5FAdblkpage.c H5FAhdr.c H5FAint.c H5FAstat.c \ - H5FAtest.c H5FD.c H5FDcore.c H5FDfamily.c H5FDint.c H5FDlog.c \ - H5FDmulti.c H5FDsec2.c H5FDspace.c H5FDstdio.c H5FDtest.c \ - H5FL.c H5FO.c H5FS.c H5FScache.c H5FSdbg.c H5FSint.c \ - H5FSsection.c H5FSstat.c H5FStest.c H5G.c H5Gbtree2.c \ - H5Gcache.c H5Gcompact.c H5Gdense.c H5Gdeprec.c H5Gent.c \ - H5Gint.c H5Glink.c H5Gloc.c H5Gname.c H5Gnode.c H5Gobj.c \ - H5Goh.c H5Groot.c H5Gstab.c H5Gtest.c H5Gtraverse.c H5HF.c \ - H5HFbtree2.c H5HFcache.c H5HFdbg.c H5HFdblock.c H5HFdtable.c \ - H5HFhdr.c H5HFhuge.c H5HFiblock.c H5HFiter.c H5HFman.c \ - H5HFsection.c H5HFspace.c H5HFstat.c H5HFtest.c H5HFtiny.c \ - H5HG.c H5HGcache.c H5HGdbg.c H5HGquery.c H5HL.c H5HLcache.c \ - H5HLdbg.c H5HLint.c H5HLprfx.c H5HLdblk.c H5HP.c H5I.c \ - H5Itest.c H5L.c H5Lexternal.c H5lib_settings.c H5MF.c \ + H5Aint.c H5Atest.c H5AC.c H5ACdbg.c H5ACproxy_entry.c H5B.c \ + H5Bcache.c H5Bdbg.c H5B2.c H5B2cache.c H5B2dbg.c H5B2hdr.c \ + H5B2int.c H5B2internal.c H5B2leaf.c H5B2stat.c H5B2test.c \ + H5C.c H5Cdbg.c H5Cepoch.c H5Cimage.c H5Clog.c H5Clog_json.c \ + H5Clog_trace.c H5Cprefetched.c H5Cquery.c H5Ctag.c H5Ctest.c \ + H5CS.c H5CX.c H5D.c H5Dbtree.c H5Dbtree2.c H5Dchunk.c \ + H5Dcompact.c H5Dcontig.c H5Ddbg.c H5Ddeprec.c H5Dearray.c \ + H5Defl.c H5Dfarray.c H5Dfill.c H5Dint.c H5Dio.c H5Dlayout.c \ + H5Dnone.c H5Doh.c H5Dscatgath.c H5Dselect.c H5Dsingle.c \ + H5Dtest.c H5Dvirtual.c H5E.c H5Edeprec.c H5Eint.c H5EA.c \ + H5EAcache.c H5EAdbg.c H5EAdblkpage.c H5EAdblock.c H5EAhdr.c \ + H5EAiblock.c H5EAint.c H5EAsblock.c H5EAstat.c H5EAtest.c \ + H5F.c H5Faccum.c H5Fcwfs.c H5Fdbg.c H5Fdeprec.c H5Fefc.c \ + H5Ffake.c H5Fint.c H5Fio.c H5Fmount.c H5Fquery.c H5Fsfile.c \ + H5Fspace.c H5Fsuper.c H5Fsuper_cache.c H5Ftest.c H5FA.c \ + H5FAcache.c H5FAdbg.c H5FAdblock.c H5FAdblkpage.c H5FAhdr.c \ + H5FAint.c H5FAstat.c H5FAtest.c H5FD.c H5FDcore.c H5FDfamily.c \ + H5FDint.c H5FDlog.c H5FDmulti.c H5FDsec2.c H5FDspace.c \ + H5FDstdio.c H5FDtest.c H5FL.c H5FO.c H5FS.c H5FScache.c \ + H5FSdbg.c H5FSint.c H5FSsection.c H5FSstat.c H5FStest.c H5G.c \ + H5Gbtree2.c H5Gcache.c H5Gcompact.c H5Gdense.c H5Gdeprec.c \ + H5Gent.c H5Gint.c H5Glink.c H5Gloc.c H5Gname.c H5Gnode.c \ + H5Gobj.c H5Goh.c H5Groot.c H5Gstab.c H5Gtest.c H5Gtraverse.c \ + H5HF.c H5HFbtree2.c H5HFcache.c H5HFdbg.c H5HFdblock.c \ + H5HFdtable.c H5HFhdr.c H5HFhuge.c H5HFiblock.c H5HFiter.c \ + H5HFman.c H5HFsection.c H5HFspace.c H5HFstat.c H5HFtest.c \ + H5HFtiny.c H5HG.c H5HGcache.c H5HGdbg.c H5HGquery.c H5HL.c \ + H5HLcache.c H5HLdbg.c H5HLint.c H5HLprfx.c H5HLdblk.c H5HP.c \ + H5I.c H5Itest.c H5L.c H5Lexternal.c H5lib_settings.c H5MF.c \ H5MFaggr.c H5MFdbg.c H5MFsection.c H5MM.c H5MP.c H5MPtest.c \ H5O.c H5Odeprec.c H5Oainfo.c H5Oalloc.c H5Oattr.c \ H5Oattribute.c H5Obogus.c H5Obtreek.c H5Ocache.c \ @@ -236,62 +236,63 @@ am__libhdf5_la_SOURCES_DIST = H5.c H5checksum.c H5dbg.c H5system.c \ am_libhdf5_la_OBJECTS = H5.lo H5checksum.lo H5dbg.lo H5system.lo \ H5timer.lo H5trace.lo H5A.lo H5Abtree2.lo H5Adense.lo \ H5Adeprec.lo H5Aint.lo H5Atest.lo H5AC.lo H5ACdbg.lo \ - H5AClog.lo H5ACproxy_entry.lo H5B.lo H5Bcache.lo H5Bdbg.lo \ - H5B2.lo H5B2cache.lo H5B2dbg.lo H5B2hdr.lo H5B2int.lo \ - H5B2internal.lo H5B2leaf.lo H5B2stat.lo H5B2test.lo H5C.lo \ - H5Cdbg.lo H5Cepoch.lo H5Cimage.lo H5Clog.lo H5Cprefetched.lo \ - H5Cquery.lo H5Ctag.lo H5Ctest.lo H5CS.lo H5CX.lo H5D.lo \ - H5Dbtree.lo H5Dbtree2.lo H5Dchunk.lo H5Dcompact.lo \ - H5Dcontig.lo H5Ddbg.lo H5Ddeprec.lo H5Dearray.lo H5Defl.lo \ - H5Dfarray.lo H5Dfill.lo H5Dint.lo H5Dio.lo H5Dlayout.lo \ - H5Dnone.lo H5Doh.lo H5Dscatgath.lo H5Dselect.lo H5Dsingle.lo \ - H5Dtest.lo H5Dvirtual.lo H5E.lo H5Edeprec.lo H5Eint.lo H5EA.lo \ - H5EAcache.lo H5EAdbg.lo H5EAdblkpage.lo H5EAdblock.lo \ - H5EAhdr.lo H5EAiblock.lo H5EAint.lo H5EAsblock.lo H5EAstat.lo \ - H5EAtest.lo H5F.lo H5Faccum.lo H5Fcwfs.lo H5Fdbg.lo \ - H5Fdeprec.lo H5Fefc.lo H5Ffake.lo H5Fint.lo H5Fio.lo \ - H5Fmount.lo H5Fquery.lo H5Fsfile.lo H5Fspace.lo H5Fsuper.lo \ - H5Fsuper_cache.lo H5Ftest.lo H5FA.lo H5FAcache.lo H5FAdbg.lo \ - H5FAdblock.lo H5FAdblkpage.lo H5FAhdr.lo H5FAint.lo \ - H5FAstat.lo H5FAtest.lo H5FD.lo H5FDcore.lo H5FDfamily.lo \ - H5FDint.lo H5FDlog.lo H5FDmulti.lo H5FDsec2.lo H5FDspace.lo \ - H5FDstdio.lo H5FDtest.lo H5FL.lo H5FO.lo H5FS.lo H5FScache.lo \ - H5FSdbg.lo H5FSint.lo H5FSsection.lo H5FSstat.lo H5FStest.lo \ - H5G.lo H5Gbtree2.lo H5Gcache.lo H5Gcompact.lo H5Gdense.lo \ - H5Gdeprec.lo H5Gent.lo H5Gint.lo H5Glink.lo H5Gloc.lo \ - H5Gname.lo H5Gnode.lo H5Gobj.lo H5Goh.lo H5Groot.lo H5Gstab.lo \ - H5Gtest.lo H5Gtraverse.lo H5HF.lo H5HFbtree2.lo H5HFcache.lo \ - H5HFdbg.lo H5HFdblock.lo H5HFdtable.lo H5HFhdr.lo H5HFhuge.lo \ - H5HFiblock.lo H5HFiter.lo H5HFman.lo H5HFsection.lo \ - H5HFspace.lo H5HFstat.lo H5HFtest.lo H5HFtiny.lo H5HG.lo \ - H5HGcache.lo H5HGdbg.lo H5HGquery.lo H5HL.lo H5HLcache.lo \ - H5HLdbg.lo H5HLint.lo H5HLprfx.lo H5HLdblk.lo H5HP.lo H5I.lo \ - H5Itest.lo H5L.lo H5Lexternal.lo H5lib_settings.lo H5MF.lo \ - H5MFaggr.lo H5MFdbg.lo H5MFsection.lo H5MM.lo H5MP.lo \ - H5MPtest.lo H5O.lo H5Odeprec.lo H5Oainfo.lo H5Oalloc.lo \ - H5Oattr.lo H5Oattribute.lo H5Obogus.lo H5Obtreek.lo \ - H5Ocache.lo H5Ocache_image.lo H5Ochunk.lo H5Ocont.lo \ - H5Ocopy.lo H5Odbg.lo H5Odrvinfo.lo H5Odtype.lo H5Oefl.lo \ - H5Ofill.lo H5Oflush.lo H5Ofsinfo.lo H5Oginfo.lo H5Oint.lo \ - H5Olayout.lo H5Olinfo.lo H5Olink.lo H5Omessage.lo H5Omtime.lo \ - H5Oname.lo H5Onull.lo H5Opline.lo H5Orefcount.lo H5Osdspace.lo \ - H5Oshared.lo H5Oshmesg.lo H5Ostab.lo H5Otest.lo H5Ounknown.lo \ - H5P.lo H5Pacpl.lo H5Pdapl.lo H5Pdcpl.lo H5Pdeprec.lo \ - H5Pdxpl.lo H5Pencdec.lo H5Pfapl.lo H5Pfcpl.lo H5Pfmpl.lo \ - H5Pgcpl.lo H5Pint.lo H5Plapl.lo H5Plcpl.lo H5Pocpl.lo \ - H5Pocpypl.lo H5Pstrcpl.lo H5Ptest.lo H5PB.lo H5PL.lo \ - H5PLint.lo H5PLpath.lo H5PLplugin_cache.lo H5R.lo H5Rint.lo \ - H5Rdeprec.lo H5UC.lo H5RS.lo H5S.lo H5Sall.lo H5Sdbg.lo \ - H5Shyper.lo H5Snone.lo H5Spoint.lo H5Sselect.lo H5Stest.lo \ - H5SL.lo H5SM.lo H5SMbtree2.lo H5SMcache.lo H5SMmessage.lo \ - H5SMtest.lo H5ST.lo H5T.lo H5Tarray.lo H5Tbit.lo H5Tcommit.lo \ - H5Tcompound.lo H5Tconv.lo H5Tcset.lo H5Tdbg.lo H5Tdeprec.lo \ - H5Tenum.lo H5Tfields.lo H5Tfixed.lo H5Tfloat.lo H5Tinit.lo \ - H5Tnative.lo H5Toffset.lo H5Toh.lo H5Topaque.lo H5Torder.lo \ - H5Tpad.lo H5Tprecis.lo H5Tstrpad.lo H5Tvisit.lo H5Tvlen.lo \ - H5TS.lo H5VM.lo H5WB.lo H5Z.lo H5Zdeflate.lo H5Zfletcher32.lo \ - H5Znbit.lo H5Zshuffle.lo H5Zscaleoffset.lo H5Zszip.lo \ - H5Ztrans.lo $(am__objects_1) $(am__objects_2) + H5ACproxy_entry.lo H5B.lo H5Bcache.lo H5Bdbg.lo H5B2.lo \ + H5B2cache.lo H5B2dbg.lo H5B2hdr.lo H5B2int.lo H5B2internal.lo \ + H5B2leaf.lo H5B2stat.lo H5B2test.lo H5C.lo H5Cdbg.lo \ + H5Cepoch.lo H5Cimage.lo H5Clog.lo H5Clog_json.lo \ + H5Clog_trace.lo H5Cprefetched.lo H5Cquery.lo H5Ctag.lo \ + H5Ctest.lo H5CS.lo H5CX.lo H5D.lo H5Dbtree.lo H5Dbtree2.lo \ + H5Dchunk.lo H5Dcompact.lo H5Dcontig.lo H5Ddbg.lo H5Ddeprec.lo \ + H5Dearray.lo H5Defl.lo H5Dfarray.lo H5Dfill.lo H5Dint.lo \ + H5Dio.lo H5Dlayout.lo H5Dnone.lo H5Doh.lo H5Dscatgath.lo \ + H5Dselect.lo H5Dsingle.lo H5Dtest.lo H5Dvirtual.lo H5E.lo \ + H5Edeprec.lo H5Eint.lo H5EA.lo H5EAcache.lo H5EAdbg.lo \ + H5EAdblkpage.lo H5EAdblock.lo H5EAhdr.lo H5EAiblock.lo \ + H5EAint.lo H5EAsblock.lo H5EAstat.lo H5EAtest.lo H5F.lo \ + H5Faccum.lo H5Fcwfs.lo H5Fdbg.lo H5Fdeprec.lo H5Fefc.lo \ + H5Ffake.lo H5Fint.lo H5Fio.lo H5Fmount.lo H5Fquery.lo \ + H5Fsfile.lo H5Fspace.lo H5Fsuper.lo H5Fsuper_cache.lo \ + H5Ftest.lo H5FA.lo H5FAcache.lo H5FAdbg.lo H5FAdblock.lo \ + H5FAdblkpage.lo H5FAhdr.lo H5FAint.lo H5FAstat.lo H5FAtest.lo \ + H5FD.lo H5FDcore.lo H5FDfamily.lo H5FDint.lo H5FDlog.lo \ + H5FDmulti.lo H5FDsec2.lo H5FDspace.lo H5FDstdio.lo H5FDtest.lo \ + H5FL.lo H5FO.lo H5FS.lo H5FScache.lo H5FSdbg.lo H5FSint.lo \ + H5FSsection.lo H5FSstat.lo H5FStest.lo H5G.lo H5Gbtree2.lo \ + H5Gcache.lo H5Gcompact.lo H5Gdense.lo H5Gdeprec.lo H5Gent.lo \ + H5Gint.lo H5Glink.lo H5Gloc.lo H5Gname.lo H5Gnode.lo H5Gobj.lo \ + H5Goh.lo H5Groot.lo H5Gstab.lo H5Gtest.lo H5Gtraverse.lo \ + H5HF.lo H5HFbtree2.lo H5HFcache.lo H5HFdbg.lo H5HFdblock.lo \ + H5HFdtable.lo H5HFhdr.lo H5HFhuge.lo H5HFiblock.lo H5HFiter.lo \ + H5HFman.lo H5HFsection.lo H5HFspace.lo H5HFstat.lo H5HFtest.lo \ + H5HFtiny.lo H5HG.lo H5HGcache.lo H5HGdbg.lo H5HGquery.lo \ + H5HL.lo H5HLcache.lo H5HLdbg.lo H5HLint.lo H5HLprfx.lo \ + H5HLdblk.lo H5HP.lo H5I.lo H5Itest.lo H5L.lo H5Lexternal.lo \ + H5lib_settings.lo H5MF.lo H5MFaggr.lo H5MFdbg.lo \ + H5MFsection.lo H5MM.lo H5MP.lo H5MPtest.lo H5O.lo H5Odeprec.lo \ + H5Oainfo.lo H5Oalloc.lo H5Oattr.lo H5Oattribute.lo H5Obogus.lo \ + H5Obtreek.lo H5Ocache.lo H5Ocache_image.lo H5Ochunk.lo \ + H5Ocont.lo H5Ocopy.lo H5Odbg.lo H5Odrvinfo.lo H5Odtype.lo \ + H5Oefl.lo H5Ofill.lo H5Oflush.lo H5Ofsinfo.lo H5Oginfo.lo \ + H5Oint.lo H5Olayout.lo H5Olinfo.lo H5Olink.lo H5Omessage.lo \ + H5Omtime.lo H5Oname.lo H5Onull.lo H5Opline.lo H5Orefcount.lo \ + H5Osdspace.lo H5Oshared.lo H5Oshmesg.lo H5Ostab.lo H5Otest.lo \ + H5Ounknown.lo H5P.lo H5Pacpl.lo H5Pdapl.lo H5Pdcpl.lo \ + H5Pdeprec.lo H5Pdxpl.lo H5Pencdec.lo H5Pfapl.lo H5Pfcpl.lo \ + H5Pfmpl.lo H5Pgcpl.lo H5Pint.lo H5Plapl.lo H5Plcpl.lo \ + H5Pocpl.lo H5Pocpypl.lo H5Pstrcpl.lo H5Ptest.lo H5PB.lo \ + H5PL.lo H5PLint.lo H5PLpath.lo H5PLplugin_cache.lo H5R.lo \ + H5Rint.lo H5Rdeprec.lo H5UC.lo H5RS.lo H5S.lo H5Sall.lo \ + H5Sdbg.lo H5Shyper.lo H5Snone.lo H5Spoint.lo H5Sselect.lo \ + H5Stest.lo H5SL.lo H5SM.lo H5SMbtree2.lo H5SMcache.lo \ + H5SMmessage.lo H5SMtest.lo H5ST.lo H5T.lo H5Tarray.lo \ + H5Tbit.lo H5Tcommit.lo H5Tcompound.lo H5Tconv.lo H5Tcset.lo \ + H5Tdbg.lo H5Tdeprec.lo H5Tenum.lo H5Tfields.lo H5Tfixed.lo \ + H5Tfloat.lo H5Tinit.lo H5Tnative.lo H5Toffset.lo H5Toh.lo \ + H5Topaque.lo H5Torder.lo H5Tpad.lo H5Tprecis.lo H5Tstrpad.lo \ + H5Tvisit.lo H5Tvlen.lo H5TS.lo H5VM.lo H5WB.lo H5Z.lo \ + H5Zdeflate.lo H5Zfletcher32.lo H5Znbit.lo H5Zshuffle.lo \ + H5Zscaleoffset.lo H5Zszip.lo H5Ztrans.lo $(am__objects_1) \ + $(am__objects_2) libhdf5_la_OBJECTS = $(am_libhdf5_la_OBJECTS) AM_V_lt = $(am__v_lt_@AM_V@) am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) @@ -690,7 +691,6 @@ MAINT = @MAINT@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MEMORYALLOCSANITYCHECK = @MEMORYALLOCSANITYCHECK@ -METADATATRACEFILE = @METADATATRACEFILE@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ NM = @NM@ @@ -724,6 +724,7 @@ PAC_FORTRAN_NUM_INTEGER_KINDS = @PAC_FORTRAN_NUM_INTEGER_KINDS@ PARALLEL = @PARALLEL@ PARALLEL_FILTERED_WRITES = @PARALLEL_FILTERED_WRITES@ PATH_SEPARATOR = @PATH_SEPARATOR@ +PREADWRITE = @PREADWRITE@ PROFILING = @PROFILING@ RANLIB = @RANLIB@ ROOT = @ROOT@ @@ -868,29 +869,29 @@ TRACE = perl $(top_srcdir)/bin/trace # .chklog files are output from those tests. # *.clog and *.clog2 are from the MPE option. CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 -LT_VERS_INTERFACE = 103 +LT_VERS_INTERFACE = 104 LT_VERS_REVISION = 0 -LT_VERS_AGE = 0 -LT_CXX_VERS_INTERFACE = 103 +LT_VERS_AGE = 1 +LT_CXX_VERS_INTERFACE = 104 LT_CXX_VERS_REVISION = 0 -LT_CXX_VERS_AGE = 0 -LT_F_VERS_INTERFACE = 101 -LT_F_VERS_REVISION = 2 -LT_F_VERS_AGE = 1 +LT_CXX_VERS_AGE = 1 +LT_F_VERS_INTERFACE = 102 +LT_F_VERS_REVISION = 0 +LT_F_VERS_AGE = 0 LT_HL_VERS_INTERFACE = 101 -LT_HL_VERS_REVISION = 1 +LT_HL_VERS_REVISION = 2 LT_HL_VERS_AGE = 1 LT_HL_CXX_VERS_INTERFACE = 101 -LT_HL_CXX_VERS_REVISION = 2 +LT_HL_CXX_VERS_REVISION = 3 LT_HL_CXX_VERS_AGE = 1 LT_HL_F_VERS_INTERFACE = 100 -LT_HL_F_VERS_REVISION = 3 +LT_HL_F_VERS_REVISION = 4 LT_HL_F_VERS_AGE = 0 -LT_JAVA_VERS_INTERFACE = 103 +LT_JAVA_VERS_INTERFACE = 104 LT_JAVA_VERS_REVISION = 0 -LT_JAVA_VERS_AGE = 3 +LT_JAVA_VERS_AGE = 4 LT_TOOLS_VERS_INTERFACE = 101 -LT_TOOLS_VERS_REVISION = 1 +LT_TOOLS_VERS_REVISION = 2 LT_TOOLS_VERS_AGE = 1 # Our main target, the HDF5 library @@ -907,20 +908,20 @@ DISTCLEANFILES = H5pubconf.h # library sources libhdf5_la_SOURCES = H5.c H5checksum.c H5dbg.c H5system.c H5timer.c \ H5trace.c H5A.c H5Abtree2.c H5Adense.c H5Adeprec.c H5Aint.c \ - H5Atest.c H5AC.c H5ACdbg.c H5AClog.c H5ACproxy_entry.c H5B.c \ - H5Bcache.c H5Bdbg.c H5B2.c H5B2cache.c H5B2dbg.c H5B2hdr.c \ - H5B2int.c H5B2internal.c H5B2leaf.c H5B2stat.c H5B2test.c \ - H5C.c H5Cdbg.c H5Cepoch.c H5Cimage.c H5Clog.c H5Cprefetched.c \ - H5Cquery.c H5Ctag.c H5Ctest.c H5CS.c H5CX.c H5D.c H5Dbtree.c \ - H5Dbtree2.c H5Dchunk.c H5Dcompact.c H5Dcontig.c H5Ddbg.c \ - H5Ddeprec.c H5Dearray.c H5Defl.c H5Dfarray.c H5Dfill.c \ - H5Dint.c H5Dio.c H5Dlayout.c H5Dnone.c H5Doh.c H5Dscatgath.c \ - H5Dselect.c H5Dsingle.c H5Dtest.c H5Dvirtual.c H5E.c \ - H5Edeprec.c H5Eint.c H5EA.c H5EAcache.c H5EAdbg.c \ - H5EAdblkpage.c H5EAdblock.c H5EAhdr.c H5EAiblock.c H5EAint.c \ - H5EAsblock.c H5EAstat.c H5EAtest.c H5F.c H5Faccum.c H5Fcwfs.c \ - H5Fdbg.c H5Fdeprec.c H5Fefc.c H5Ffake.c H5Fint.c H5Fio.c \ - H5Fmount.c H5Fquery.c H5Fsfile.c H5Fspace.c H5Fsuper.c \ + H5Atest.c H5AC.c H5ACdbg.c H5ACproxy_entry.c H5B.c H5Bcache.c \ + H5Bdbg.c H5B2.c H5B2cache.c H5B2dbg.c H5B2hdr.c H5B2int.c \ + H5B2internal.c H5B2leaf.c H5B2stat.c H5B2test.c H5C.c H5Cdbg.c \ + H5Cepoch.c H5Cimage.c H5Clog.c H5Clog_json.c H5Clog_trace.c \ + H5Cprefetched.c H5Cquery.c H5Ctag.c H5Ctest.c H5CS.c H5CX.c \ + H5D.c H5Dbtree.c H5Dbtree2.c H5Dchunk.c H5Dcompact.c \ + H5Dcontig.c H5Ddbg.c H5Ddeprec.c H5Dearray.c H5Defl.c \ + H5Dfarray.c H5Dfill.c H5Dint.c H5Dio.c H5Dlayout.c H5Dnone.c \ + H5Doh.c H5Dscatgath.c H5Dselect.c H5Dsingle.c H5Dtest.c \ + H5Dvirtual.c H5E.c H5Edeprec.c H5Eint.c H5EA.c H5EAcache.c \ + H5EAdbg.c H5EAdblkpage.c H5EAdblock.c H5EAhdr.c H5EAiblock.c \ + H5EAint.c H5EAsblock.c H5EAstat.c H5EAtest.c H5F.c H5Faccum.c \ + H5Fcwfs.c H5Fdbg.c H5Fdeprec.c H5Fefc.c H5Ffake.c H5Fint.c \ + H5Fio.c H5Fmount.c H5Fquery.c H5Fsfile.c H5Fspace.c H5Fsuper.c \ H5Fsuper_cache.c H5Ftest.c H5FA.c H5FAcache.c H5FAdbg.c \ H5FAdblock.c H5FAdblkpage.c H5FAhdr.c H5FAint.c H5FAstat.c \ H5FAtest.c H5FD.c H5FDcore.c H5FDfamily.c H5FDint.c H5FDlog.c \ @@ -968,7 +969,7 @@ include_HEADERS = hdf5.h H5api_adpt.h H5overflow.h H5pubconf.h H5public.h H5vers H5Epubgen.h H5Epublic.h H5Fpublic.h \ H5FDpublic.h H5FDcore.h H5FDdirect.h \ H5FDfamily.h H5FDlog.h H5FDmpi.h H5FDmpio.h \ - H5FDmulti.h H5FDsec2.h H5FDstdio.h \ + H5FDmulti.h H5FDsec2.h H5FDstdio.h H5FDwindows.h \ H5Gpublic.h H5Ipublic.h H5Lpublic.h \ H5MMpublic.h H5Opublic.h H5Ppublic.h \ H5PLextern.h H5PLpublic.h \ @@ -1118,7 +1119,6 @@ distclean-compile: @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5A.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5AC.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5ACdbg.Plo@am__quote@ -@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5AClog.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5ACmpio.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5ACproxy_entry.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Abtree2.Plo@am__quote@ @@ -1145,6 +1145,8 @@ distclean-compile: @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Cepoch.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Cimage.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Clog.Plo@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Clog_json.Plo@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Clog_trace.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Cmpio.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Cprefetched.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Cquery.Plo@am__quote@ @@ -2119,7 +2121,7 @@ build-check-p: $(LIB) $(PROGS) $(chk_TESTS) echo "**** Hint ****"; \ echo "Parallel test files reside in the current directory" \ "by default."; \ - echo "Set HDF5_PARAPREFIX to use another directory. E.g.,"; \ + echo "Set HDF5_PARAPREFIX to use another directory. e.g.,"; \ echo " HDF5_PARAPREFIX=/PFS/user/me"; \ echo " export HDF5_PARAPREFIX"; \ echo " make check"; \ diff --git a/src/libhdf5.settings.in b/src/libhdf5.settings.in index 531cd00..9d0e29f 100644 --- a/src/libhdf5.settings.in +++ b/src/libhdf5.settings.in @@ -82,7 +82,6 @@ Parallel Filtered Dataset Writes: @PARALLEL_FILTERED_WRITES@ API tracing: @TRACE_API@ Using memory checker: @USINGMEMCHECKER@ Memory allocation sanity checks: @MEMORYALLOCSANITYCHECK@ - Metadata trace file: @METADATATRACEFILE@ Function stack tracing: @CODESTACK@ Strict file format checks: @STRICT_FORMAT_CHECKS@ Optimization instrumentation: @INSTRUMENT_LIBRARY@ |