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author | vchoi-hdfgroup <55293060+vchoi-hdfgroup@users.noreply.github.com> | 2022-12-12 16:40:30 (GMT) |
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committer | GitHub <noreply@github.com> | 2022-12-12 16:40:30 (GMT) |
commit | 8ef713ae5dc454db66ea821635f6d6d6970858f0 (patch) | |
tree | 44ea73967efdafa0cc1296af0ed5acdaa4d78312 /src | |
parent | 1dae8c805c61039b7f0c53021d0b828026077eba (diff) | |
download | hdf5-8ef713ae5dc454db66ea821635f6d6d6970858f0.zip hdf5-8ef713ae5dc454db66ea821635f6d6d6970858f0.tar.gz hdf5-8ef713ae5dc454db66ea821635f6d6d6970858f0.tar.bz2 |
Fix for HDFFV-10840: Instead of using fill->buf for datatype conversiā¦ (#2277)
* Fix for HDFFV-10840: Instead of using fill->buf for datatype conversion (#2153)
* Fix for HDFFV-10840: Instead of using fill->buf for datatype conversion
if it is large enough, a buffer is allocated regardless so that the element
in fill->buf can later be reclaimed.
Valgrind is run on test/set_extent.c and there is no memory leak.
* Add information of this fix to release notes.
* Change macos version for CI to macos-11 until accum test failure is fixed for macos
12.
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
Diffstat (limited to 'src')
-rw-r--r-- | src/H5Ofill.c | 25 |
1 files changed, 11 insertions, 14 deletions
diff --git a/src/H5Ofill.c b/src/H5Ofill.c index 4106056..2197c09 100644 --- a/src/H5Ofill.c +++ b/src/H5Ofill.c @@ -1006,6 +1006,8 @@ H5O_fill_convert(H5O_fill_t *fill, H5T_t *dset_type, hbool_t *fill_changed) /* Don't bother doing anything if there will be no actual conversion */ if (!H5T_path_noop(tpath)) { + size_t fill_type_size; + if ((src_id = H5I_register(H5I_DATATYPE, H5T_copy(fill->type, H5T_COPY_ALL), FALSE)) < 0 || (dst_id = H5I_register(H5I_DATATYPE, H5T_copy(dset_type, H5T_COPY_ALL), FALSE)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to copy/register data type") @@ -1014,13 +1016,11 @@ H5O_fill_convert(H5O_fill_t *fill, H5T_t *dset_type, hbool_t *fill_changed) * Datatype conversions are always done in place, so we need a buffer * that is large enough for both source and destination. */ - if (H5T_get_size(fill->type) >= H5T_get_size(dset_type)) - buf = fill->buf; - else { - if (NULL == (buf = H5MM_malloc(H5T_get_size(dset_type)))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for type conversion") - H5MM_memcpy(buf, fill->buf, H5T_get_size(fill->type)); - } /* end else */ + fill_type_size = H5T_get_size(fill->type); + + if (NULL == (buf = H5MM_malloc(MAX(fill_type_size, H5T_get_size(dset_type))))) + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for type conversion") + H5MM_memcpy(buf, fill->buf, fill_type_size); /* Use CALLOC here to clear the buffer in case later the library thinks there's * data in the background. */ @@ -1032,11 +1032,10 @@ H5O_fill_convert(H5O_fill_t *fill, H5T_t *dset_type, hbool_t *fill_changed) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "datatype conversion failed") /* Update the fill message */ - if (buf != fill->buf) { - H5T_vlen_reclaim_elmt(fill->buf, fill->type); - H5MM_xfree(fill->buf); - fill->buf = buf; - } /* end if */ + H5T_vlen_reclaim_elmt(fill->buf, fill->type); + H5MM_xfree(fill->buf); + fill->buf = buf; + (void)H5T_close_real(fill->type); fill->type = NULL; H5_CHECKED_ASSIGN(fill->size, ssize_t, H5T_get_size(dset_type), size_t); @@ -1050,8 +1049,6 @@ done: HDONE_ERROR(H5E_OHDR, H5E_CANTDEC, FAIL, "unable to decrement ref count for temp ID") if (dst_id >= 0 && H5I_dec_ref(dst_id) < 0) HDONE_ERROR(H5E_OHDR, H5E_CANTDEC, FAIL, "unable to decrement ref count for temp ID") - if (buf != fill->buf) - H5MM_xfree(buf); if (bkg) H5MM_xfree(bkg); |