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author | Quincey Koziol <koziol@hdfgroup.org> | 2011-10-14 13:28:23 (GMT) |
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committer | Quincey Koziol <koziol@hdfgroup.org> | 2011-10-14 13:28:23 (GMT) |
commit | 9fa5dca9c2ebc2c3cb25ded77d37b9c666e11fbd (patch) | |
tree | 9e1f3636dc707bf0a3ef217db98cebde4efefb5c /src | |
parent | 56960ac85c40c3b08989ff776d2a69c6e79a6f09 (diff) | |
download | hdf5-9fa5dca9c2ebc2c3cb25ded77d37b9c666e11fbd.zip hdf5-9fa5dca9c2ebc2c3cb25ded77d37b9c666e11fbd.tar.gz hdf5-9fa5dca9c2ebc2c3cb25ded77d37b9c666e11fbd.tar.bz2 |
[svn-r21561] Description:
Correct error in loading local heap prefix & data block from the file.
Sometimes the local heap's prefix could be loaded before the data block (e.g.
using H5Oget_info), but then when the data block was loaded later, the free
list information would get lost, causing the heap's size to grow larger than
necessary. This is Jira bug #HDFFV-7767
Tested on:
Mac OS X/32 10.7.2 (amazon) w/debug
(h5committest coming up)
Diffstat (limited to 'src')
-rw-r--r-- | src/H5HL.c | 17 | ||||
-rw-r--r-- | src/H5HLcache.c | 28 | ||||
-rw-r--r-- | src/H5HLpkg.h | 6 |
3 files changed, 22 insertions, 29 deletions
@@ -153,9 +153,12 @@ H5HL_create(H5F_t *f, hid_t dxpl_id, size_t size_hint, haddr_t *addr_p/*out*/) heap->freelist->offset = 0; heap->freelist->size = size_hint; heap->freelist->prev = heap->freelist->next = NULL; + heap->free_block = 0; } /* end if */ - else + else { heap->freelist = NULL; + heap->free_block = H5HL_FREE_NULL; + } /* end else */ /* Allocate the heap prefix */ if(NULL == (prfx = H5HL_prfx_new(heap))) @@ -459,8 +462,6 @@ H5HL_protect(H5F_t *f, hid_t dxpl_id, haddr_t addr, H5AC_protect_t rw) prfx_udata.sizeof_addr = H5F_SIZEOF_ADDR(f); prfx_udata.prfx_addr = addr; prfx_udata.sizeof_prfx = H5HL_SIZEOF_HDR(f); - prfx_udata.loaded = FALSE; - prfx_udata.free_block = H5HL_FREE_NULL; /* Protect the local heap prefix */ if(NULL == (prfx = (H5HL_prfx_t *)H5AC_protect(f, dxpl_id, H5AC_LHEAP_PRFX, addr, &prfx_udata, rw))) @@ -482,8 +483,6 @@ H5HL_protect(H5F_t *f, hid_t dxpl_id, haddr_t addr, H5AC_protect_t rw) /* Construct the user data for protect callback */ dblk_udata.heap = heap; - dblk_udata.free_block = prfx_udata.loaded ? prfx_udata.free_block : - (heap->freelist ? heap->freelist->offset : H5HL_FREE_NULL); dblk_udata.loaded = FALSE; /* Protect the local heap data block */ @@ -1076,8 +1075,6 @@ H5HL_delete(H5F_t *f, hid_t dxpl_id, haddr_t addr) prfx_udata.sizeof_addr = H5F_SIZEOF_ADDR(f); prfx_udata.prfx_addr = addr; prfx_udata.sizeof_prfx = H5HL_SIZEOF_HDR(f); - prfx_udata.loaded = FALSE; - prfx_udata.free_block = H5HL_FREE_NULL; /* Protect the local heap prefix */ if(NULL == (prfx = (H5HL_prfx_t *)H5AC_protect(f, dxpl_id, H5AC_LHEAP_PRFX, addr, &prfx_udata, H5AC_WRITE))) @@ -1092,8 +1089,6 @@ H5HL_delete(H5F_t *f, hid_t dxpl_id, haddr_t addr) /* Construct the user data for protect callback */ dblk_udata.heap = heap; - dblk_udata.free_block = prfx_udata.loaded ? prfx_udata.free_block : - (heap->freelist ? heap->freelist->offset : H5HL_FREE_NULL); dblk_udata.loaded = FALSE; /* Protect the local heap data block */ @@ -1156,8 +1151,6 @@ H5HL_get_size(H5F_t *f, hid_t dxpl_id, haddr_t addr, size_t *size) prfx_udata.sizeof_addr = H5F_SIZEOF_ADDR(f); prfx_udata.prfx_addr = addr; prfx_udata.sizeof_prfx = H5HL_SIZEOF_HDR(f); - prfx_udata.loaded = FALSE; - prfx_udata.free_block = H5HL_FREE_NULL; /* Protect the local heap prefix */ if(NULL == (prfx = (H5HL_prfx_t *)H5AC_protect(f, dxpl_id, H5AC_LHEAP_PRFX, addr, &prfx_udata, H5AC_READ))) @@ -1210,8 +1203,6 @@ H5HL_heapsize(H5F_t *f, hid_t dxpl_id, haddr_t addr, hsize_t *heap_size) prfx_udata.sizeof_addr = H5F_SIZEOF_ADDR(f); prfx_udata.prfx_addr = addr; prfx_udata.sizeof_prfx = H5HL_SIZEOF_HDR(f); - prfx_udata.loaded = FALSE; - prfx_udata.free_block = H5HL_FREE_NULL; /* Protect the local heap prefix */ if(NULL == (prfx = (H5HL_prfx_t *)H5AC_protect(f, dxpl_id, H5AC_LHEAP_PRFX, addr, &prfx_udata, H5AC_READ))) diff --git a/src/H5HLcache.c b/src/H5HLcache.c index 56d9919..daf1d87 100644 --- a/src/H5HLcache.c +++ b/src/H5HLcache.c @@ -134,9 +134,10 @@ const H5AC_class_t H5AC_LHEAP_DBLK[1] = {{ *------------------------------------------------------------------------- */ static herr_t -H5HL_fl_deserialize(H5HL_t *heap, hsize_t free_block) +H5HL_fl_deserialize(H5HL_t *heap) { H5HL_free_t *fl = NULL, *tail = NULL; /* Heap free block nodes */ + hsize_t free_block; /* Offset of free block */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5HL_fl_deserialize) @@ -146,6 +147,7 @@ H5HL_fl_deserialize(H5HL_t *heap, hsize_t free_block) HDassert(!heap->freelist); /* Build free list */ + free_block = heap->free_block; while(H5HL_FREE_NULL != free_block) { const uint8_t *p; /* Pointer into image buffer */ @@ -310,8 +312,8 @@ H5HL_prefix_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_udata) H5F_DECODE_LENGTH_LEN(p, heap->dblk_size, udata->sizeof_size); /* Free list head */ - H5F_DECODE_LENGTH_LEN(p, udata->free_block, udata->sizeof_size); - if(udata->free_block != H5HL_FREE_NULL && udata->free_block >= heap->dblk_size) + H5F_DECODE_LENGTH_LEN(p, heap->free_block, udata->sizeof_size); + if(heap->free_block != H5HL_FREE_NULL && heap->free_block >= heap->dblk_size) HGOTO_ERROR(H5E_HEAP, H5E_BADVALUE, NULL, "bad heap free list") /* Heap data address */ @@ -345,7 +347,7 @@ H5HL_prefix_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_udata) } /* end else */ /* Build free list */ - if(H5HL_fl_deserialize(heap, udata->free_block) < 0) + if(H5HL_fl_deserialize(heap) < 0) HGOTO_ERROR(H5E_HEAP, H5E_CANTINIT, NULL, "can't initialize free list") } /* end if */ else @@ -353,9 +355,6 @@ H5HL_prefix_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_udata) heap->single_cache_obj = FALSE; } /* end if */ - /* Set flag to indicate prefix from loaded from file */ - udata->loaded = TRUE; - /* Set return value */ ret_value = prfx; @@ -408,7 +407,6 @@ H5HL_prefix_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, if(prfx->cache_info.is_dirty) { H5HL_t *heap = prfx->heap; /* Pointer to the local heap */ - H5HL_free_t *fl = heap->freelist; /* Pointer to heap's free list */ uint8_t *buf; /* Pointer to heap buffer */ size_t buf_size; /* Size of buffer for encoding & writing heap info */ uint8_t *p; /* Pointer into raw data buffer */ @@ -426,6 +424,9 @@ H5HL_prefix_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, if(NULL == (buf = (uint8_t *)H5WB_actual(wb, buf_size))) HGOTO_ERROR(H5E_HEAP, H5E_NOSPACE, FAIL, "can't get actual buffer") + /* Update the free block value from the free list */ + heap->free_block = heap->freelist ? heap->freelist->offset : H5HL_FREE_NULL; + /* Serialize the heap prefix */ p = buf; HDmemcpy(p, H5HL_MAGIC, (size_t)H5_SIZEOF_MAGIC); @@ -435,18 +436,18 @@ H5HL_prefix_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, *p++ = 0; /*reserved*/ *p++ = 0; /*reserved*/ H5F_ENCODE_LENGTH_LEN(p, heap->dblk_size, heap->sizeof_size); - H5F_ENCODE_LENGTH_LEN(p, fl ? fl->offset : H5HL_FREE_NULL, heap->sizeof_size); + H5F_ENCODE_LENGTH_LEN(p, heap->free_block, heap->sizeof_size); H5F_addr_encode_len(heap->sizeof_addr, &p, heap->dblk_addr); /* Check if the local heap is a single object in cache */ if(heap->single_cache_obj) { - if((p - buf) < heap->prfx_size) { + if((size_t)(p - buf) < heap->prfx_size) { size_t gap; /* Size of gap between prefix and data block */ /* Set p to the start of the data block. This is necessary because * there may be a gap between the used portion of the prefix and the * data block due to alignment constraints. */ - gap = heap->prfx_size - (p - buf); + gap = heap->prfx_size - (size_t)(p - buf); HDmemset(p, 0, gap); p += gap; } /* end if */ @@ -654,7 +655,7 @@ H5HL_datablock_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_udata) HGOTO_ERROR(H5E_HEAP, H5E_READERROR, NULL, "unable to read local heap data block") /* Build free list */ - if(H5HL_fl_deserialize(udata->heap, udata->free_block) < 0) + if(H5HL_fl_deserialize(udata->heap) < 0) HGOTO_ERROR(H5E_HEAP, H5E_CANTINIT, NULL, "can't initialize free list") } /* end if */ @@ -707,6 +708,9 @@ H5HL_datablock_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, if(dblk->cache_info.is_dirty) { H5HL_t *heap = dblk->heap; /* Pointer to the local heap */ + /* Update the free block value from the free list */ + heap->free_block = heap->freelist ? heap->freelist->offset : H5HL_FREE_NULL; + /* Serialize the free list into the heap data's image */ H5HL_fl_serialize(heap); diff --git a/src/H5HLpkg.h b/src/H5HLpkg.h index b7e0ece..bf9be2c 100644 --- a/src/H5HLpkg.h +++ b/src/H5HLpkg.h @@ -90,18 +90,19 @@ struct H5HL_t { size_t sizeof_size; /* Size of file sizes */ size_t sizeof_addr; /* Size of file addresses */ hbool_t single_cache_obj; /* Indicate if the heap is a single object in the cache */ + H5HL_free_t *freelist; /*the free list */ /* Prefix-specific fields */ H5HL_prfx_t *prfx; /* The prefix object for the heap */ haddr_t prfx_addr; /* address of heap prefix */ size_t prfx_size; /* size of heap prefix */ + hsize_t free_block; /* Address of first free block */ /* Data block-specific fields */ H5HL_dblk_t *dblk; /* The data block object for the heap */ haddr_t dblk_addr; /* address of data block */ size_t dblk_size; /* size of heap data block on disk and in mem */ uint8_t *dblk_image; /* The data block image */ - H5HL_free_t *freelist; /*the free list */ }; /* Struct for heap data block */ @@ -127,15 +128,12 @@ typedef struct H5HL_cache_prfx_ud_t { size_t sizeof_prfx; /* Size of heap prefix */ /* Upwards */ - hbool_t loaded; /* Whether prefix was loaded from file */ - hsize_t free_block; /* First free block in heap */ } H5HL_cache_prfx_ud_t; /* Callback information for loading local heap data block from disk */ typedef struct H5HL_cache_dblk_ud_t { /* Downwards */ H5HL_t *heap; /* Local heap */ - hsize_t free_block; /* First free block in heap */ /* Upwards */ hbool_t loaded; /* Whether data block was loaded from file */ |