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authorDana Robinson <derobins@hdfgroup.org>2020-07-09 08:41:10 (GMT)
committerDana Robinson <derobins@hdfgroup.org>2020-07-09 08:41:10 (GMT)
commit30c756decb6101704a925443d623301656ba60e4 (patch)
treecf0cbe4660fec482bdf6b8c9d92d23be67fb59c9 /src
parent205fb7c915f9327175f31cd0f66b623183af3c87 (diff)
downloadhdf5-30c756decb6101704a925443d623301656ba60e4.zip
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Misc normalizations with develop.
Diffstat (limited to 'src')
-rw-r--r--src/H5Bdbg.c180
-rw-r--r--src/H5Dbtree.c14
-rw-r--r--src/H5Dbtree2.c11
-rw-r--r--src/H5Dchunk.c97
-rw-r--r--src/H5Ddbg.c29
-rw-r--r--src/H5Dearray.c405
-rw-r--r--src/H5Dfarray.c142
-rw-r--r--src/H5Dfill.c8
-rw-r--r--src/H5Dio.c44
-rw-r--r--src/H5Dmpio.c69
-rw-r--r--src/H5Doh.c8
-rw-r--r--src/H5Dscatgath.c13
-rw-r--r--src/H5Dselect.c4
-rw-r--r--src/H5EAdbg.c46
14 files changed, 530 insertions, 540 deletions
diff --git a/src/H5Bdbg.c b/src/H5Bdbg.c
index f15fe79..d900852 100644
--- a/src/H5Bdbg.c
+++ b/src/H5Bdbg.c
@@ -13,11 +13,11 @@
/*-------------------------------------------------------------------------
*
- * Created: H5Bdbg.c
- * Dec 11 2008
- * Quincey Koziol <koziol@hdfgroup.org>
+ * Created: H5Bdbg.c
+ * Dec 11 2008
+ * Quincey Koziol
*
- * Purpose: Debugging routines for B-link tree package.
+ * Purpose: Debugging routines for B-link tree package.
*
*-------------------------------------------------------------------------
*/
@@ -32,32 +32,30 @@
/***********/
/* Headers */
/***********/
-#include "H5private.h" /* Generic Functions */
-#include "H5Bpkg.h" /* B-link trees */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5MMprivate.h" /* Memory management */
-
+#include "H5private.h" /* Generic Functions */
+#include "H5Bpkg.h" /* B-link trees */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5MMprivate.h" /* Memory management */
+
/*-------------------------------------------------------------------------
* Function: H5B_debug
*
- * Purpose: Prints debugging info about a B-tree.
+ * Purpose: Prints debugging info about a B-tree.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Robb Matzke
- * matzke@llnl.gov
- * Aug 4 1997
+ * Programmer: Robb Matzke
+ * Aug 4 1997
*
*-------------------------------------------------------------------------
*/
herr_t
-H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth,
- const H5B_class_t *type, void *udata)
+H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, const H5B_class_t *type, void *udata)
{
- H5B_t *bt = NULL;
- H5UC_t *rc_shared; /* Ref-counted shared info */
+ H5B_t *bt = NULL;
+ H5UC_t *rc_shared; /* Ref-counted shared info */
H5B_shared_t *shared; /* Pointer to shared B-tree info */
H5B_cache_ud_t cache_udata; /* User-data for metadata cache callback */
unsigned u; /* Local index variable */
@@ -80,7 +78,7 @@ H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth,
/* Get shared info for B-tree */
if(NULL == (rc_shared = (type->get_shared)(f, udata)))
- HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object")
+ HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object")
shared = (H5B_shared_t *)H5UC_GET_OBJ(rc_shared);
HDassert(shared);
@@ -91,7 +89,7 @@ H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth,
cache_udata.type = type;
cache_udata.rc_shared = rc_shared;
if(NULL == (bt = (H5B_t *)H5AC_protect(f, H5AC_BT, addr, &cache_udata, H5AC__READ_ONLY_FLAG)))
- HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to load B-tree node")
+ HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to load B-tree node")
/*
* Print the values.
@@ -126,26 +124,24 @@ H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth,
* Print the child addresses
*/
for(u = 0; u < bt->nchildren; u++) {
- HDfprintf(stream, "%*sChild %d...\n", indent, "", u);
- HDfprintf(stream, "%*s%-*s %a\n", indent + 3, "", MAX(0, fwidth - 3),
- "Address:", bt->child[u]);
+ HDfprintf(stream, "%*sChild %d...\n", indent, "", u);
+ HDfprintf(stream, "%*s%-*s %a\n", indent + 3, "", MAX(0, fwidth - 3),
+ "Address:", bt->child[u]);
/* If there is a key debugging routine, use it to display the left & right keys */
- if(type->debug_key) {
+ if(type->debug_key) {
/* Decode the 'left' key & print it */
HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3),
"Left Key:");
HDassert(H5B_NKEY(bt,shared,u));
- (void)(type->debug_key)(stream, indent + 6, MAX(0, fwidth - 6),
- H5B_NKEY(bt, shared, u), udata);
+ (void)(type->debug_key)(stream, indent + 6, MAX(0, fwidth - 6), H5B_NKEY(bt, shared, u), udata);
/* Decode the 'right' key & print it */
HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3),
"Right Key:");
HDassert(H5B_NKEY(bt, shared, u + 1));
- (void)(type->debug_key)(stream, indent + 6, MAX (0, fwidth - 6),
- H5B_NKEY(bt, shared, u + 1), udata);
- } /* end if */
+ (void)(type->debug_key)(stream, indent + 6, MAX (0, fwidth - 6), H5B_NKEY(bt, shared, u + 1), udata);
+ } /* end if */
} /* end for */
done:
@@ -155,18 +151,18 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5B_debug() */
-
+
/*-------------------------------------------------------------------------
* Function: H5B__assert
*
- * Purpose: Verifies that the tree is structured correctly.
+ * Purpose: Verifies that the tree is structured correctly.
*
- * Return: Success: SUCCEED
+ * Return: Success: SUCCEED
*
- * Failure: aborts if something is wrong.
+ * Failure: aborts if something is wrong.
*
- * Programmer: Robb Matzke
- * Tuesday, November 4, 1997
+ * Programmer: Robb Matzke
+ * Tuesday, November 4, 1997
*
*-------------------------------------------------------------------------
*/
@@ -174,32 +170,32 @@ done:
herr_t
H5B__assert(H5F_t *f, haddr_t addr, const H5B_class_t *type, void *udata)
{
- H5B_t *bt = NULL;
- H5UC_t *rc_shared; /* Ref-counted shared info */
+ H5B_t *bt = NULL;
+ H5UC_t *rc_shared; /* Ref-counted shared info */
H5B_shared_t *shared; /* Pointer to shared B-tree info */
H5B_cache_ud_t cache_udata; /* User-data for metadata cache callback */
- int ncell, cmp;
- static int ncalls = 0;
- herr_t status;
+ int ncell, cmp;
+ static int ncalls = 0;
+ herr_t status;
herr_t ret_value = SUCCEED; /* Return value */
/* A queue of child data */
struct child_t {
- haddr_t addr;
- unsigned level;
- struct child_t *next;
+ haddr_t addr;
+ unsigned level;
+ struct child_t *next;
} *head = NULL, *tail = NULL, *prev = NULL, *cur = NULL, *tmp = NULL;
FUNC_ENTER_PACKAGE
if(0 == ncalls++) {
- if(H5DEBUG(B))
- HDfprintf(H5DEBUG(B), "H5B: debugging B-trees (expensive)\n");
+ if(H5DEBUG(B))
+ HDfprintf(H5DEBUG(B), "H5B: debugging B-trees (expensive)\n");
} /* end if */
/* Get shared info for B-tree */
if(NULL == (rc_shared = (type->get_shared)(f, udata)))
- HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object")
+ HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object")
shared = (H5B_shared_t *)H5UC_GET_OBJ(rc_shared);
HDassert(shared);
@@ -228,60 +224,60 @@ H5B__assert(H5F_t *f, haddr_t addr, const H5B_class_t *type, void *udata)
* test.
*/
for(ncell = 0; cur; ncell++) {
- bt = (H5B_t *)H5AC_protect(f, H5AC_BT, cur->addr, &cache_udata, H5AC__READ_ONLY_FLAG);
- HDassert(bt);
-
- /* Check node header */
- HDassert(bt->level == cur->level);
- if(cur->next && cur->next->level == bt->level)
- HDassert(H5F_addr_eq(bt->right, cur->next->addr));
- else
- HDassert(!H5F_addr_defined(bt->right));
- if(prev && prev->level == bt->level)
- HDassert(H5F_addr_eq(bt->left, prev->addr));
- else
- HDassert(!H5F_addr_defined(bt->left));
-
- if(cur->level > 0) {
+ bt = (H5B_t *)H5AC_protect(f, H5AC_BT, cur->addr, &cache_udata, H5AC__READ_ONLY_FLAG);
+ HDassert(bt);
+
+ /* Check node header */
+ HDassert(bt->level == cur->level);
+ if(cur->next && cur->next->level == bt->level)
+ HDassert(H5F_addr_eq(bt->right, cur->next->addr));
+ else
+ HDassert(!H5F_addr_defined(bt->right));
+ if(prev && prev->level == bt->level)
+ HDassert(H5F_addr_eq(bt->left, prev->addr));
+ else
+ HDassert(!H5F_addr_defined(bt->left));
+
+ if(cur->level > 0) {
unsigned u;
- for(u = 0; u < bt->nchildren; u++) {
- /*
- * Check that child nodes haven't already been seen. If they
- * have then the tree has a cycle.
- */
- for(tmp = head; tmp; tmp = tmp->next)
- HDassert(H5F_addr_ne(tmp->addr, bt->child[u]));
-
- /* Add the child node to the end of the queue */
- tmp = (struct child_t *)H5MM_calloc(sizeof(struct child_t));
- HDassert(tmp);
- tmp->addr = bt->child[u];
- tmp->level = bt->level - 1;
- tail->next = tmp;
- tail = tmp;
-
- /* Check that the keys are monotonically increasing */
- cmp = (type->cmp2)(H5B_NKEY(bt, shared, u), udata, H5B_NKEY(bt, shared, u + 1));
- HDassert(cmp < 0);
- } /* end for */
- } /* end if */
-
- /* Release node */
- status = H5AC_unprotect(f, H5AC_BT, cur->addr, bt, H5AC__NO_FLAGS_SET);
- HDassert(status >= 0);
+ for(u = 0; u < bt->nchildren; u++) {
+ /*
+ * Check that child nodes haven't already been seen. If they
+ * have then the tree has a cycle.
+ */
+ for(tmp = head; tmp; tmp = tmp->next)
+ HDassert(H5F_addr_ne(tmp->addr, bt->child[u]));
+
+ /* Add the child node to the end of the queue */
+ tmp = (struct child_t *)H5MM_calloc(sizeof(struct child_t));
+ HDassert(tmp);
+ tmp->addr = bt->child[u];
+ tmp->level = bt->level - 1;
+ tail->next = tmp;
+ tail = tmp;
+
+ /* Check that the keys are monotonically increasing */
+ cmp = (type->cmp2)(H5B_NKEY(bt, shared, u), udata, H5B_NKEY(bt, shared, u + 1));
+ HDassert(cmp < 0);
+ } /* end for */
+ } /* end if */
+
+ /* Release node */
+ status = H5AC_unprotect(f, H5AC_BT, cur->addr, bt, H5AC__NO_FLAGS_SET);
+ HDassert(status >= 0);
bt = NULL; /* Make certain future references will be caught */
- /* Advance current location in queue */
- prev = cur;
- cur = cur->next;
+ /* Advance current location in queue */
+ prev = cur;
+ cur = cur->next;
} /* end for */
/* Free all entries from queue */
while(head) {
- tmp = head->next;
- H5MM_xfree(head);
- head = tmp;
+ tmp = head->next;
+ H5MM_xfree(head);
+ head = tmp;
} /* end while */
done:
diff --git a/src/H5Dbtree.c b/src/H5Dbtree.c
index b3a9905..098e01b 100644
--- a/src/H5Dbtree.c
+++ b/src/H5Dbtree.c
@@ -39,6 +39,7 @@
#include "H5FLprivate.h" /* Free Lists */
#include "H5Iprivate.h" /* IDs */
#include "H5MFprivate.h" /* File space management */
+#include "H5MMprivate.h" /* Memory management */
#include "H5Oprivate.h" /* Object headers */
#include "H5Sprivate.h" /* Dataspaces */
#include "H5VMprivate.h" /* Vector and array functions */
@@ -252,7 +253,7 @@ H5D__btree_get_shared(const H5F_t H5_ATTR_UNUSED *f, const void *_udata)
*-------------------------------------------------------------------------
*/
static herr_t
-H5D__btree_new_node(H5F_t *f, H5B_ins_t op, void *_lt_key, void *_udata,
+H5D__btree_new_node(H5F_t H5_ATTR_NDEBUG_UNUSED *f, H5B_ins_t op, void *_lt_key, void *_udata,
void *_rt_key, haddr_t *addr_p/*out*/)
{
H5D_btree_key_t *lt_key = (H5D_btree_key_t *) _lt_key;
@@ -535,7 +536,7 @@ done:
*-------------------------------------------------------------------------
*/
static H5B_ins_t
-H5D__btree_insert(H5F_t *f, haddr_t addr, void *_lt_key, hbool_t *lt_key_changed,
+H5D__btree_insert(H5F_t H5_ATTR_NDEBUG_UNUSED *f, haddr_t H5_ATTR_NDEBUG_UNUSED addr, void *_lt_key, hbool_t *lt_key_changed,
void *_md_key, void *_udata, void *_rt_key, hbool_t H5_ATTR_UNUSED *rt_key_changed,
haddr_t *new_node_p/*out*/)
{
@@ -685,13 +686,12 @@ H5D__btree_decode_key(const H5B_shared_t *shared, const uint8_t *raw, void *_key
/* decode */
UINT32DECODE(raw, key->nbytes);
UINT32DECODE(raw, key->filter_mask);
- for(u = 0; u < layout->ndims; u++)
- {
- if (layout->dim[u] == 0)
+ for(u = 0; u < layout->ndims; u++) {
+ if(layout->dim[u] == 0)
HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "chunk size must be > 0, dim = %u ", u)
/* Retrieve coordinate offset */
- UINT64DECODE(raw, tmp_offset);
+ UINT64DECODE(raw, tmp_offset);
HDassert(0 == (tmp_offset % layout->dim[u]));
/* Convert to a scaled offset */
@@ -943,7 +943,7 @@ H5D__btree_idx_create(const H5D_chk_idx_info_t *idx_info)
/* Create the v1 B-tree for the chunk index */
if(H5B_create(idx_info->f, H5B_BTREE, &udata, &(idx_info->storage->idx_addr)/*out*/) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create B-tree")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create B-tree")
done:
FUNC_LEAVE_NOAPI(ret_value)
diff --git a/src/H5Dbtree2.c b/src/H5Dbtree2.c
index 23d58ad..ccb786b 100644
--- a/src/H5Dbtree2.c
+++ b/src/H5Dbtree2.c
@@ -32,6 +32,7 @@
#include "H5Dpkg.h" /* Datasets */
#include "H5FLprivate.h" /* Free Lists */
#include "H5MFprivate.h" /* File space management */
+#include "H5MMprivate.h" /* Memory management */
#include "H5VMprivate.h" /* Vector and array functions */
@@ -203,9 +204,9 @@ const H5B2_class_t H5D_BT2_FILT[1] = {{ /* B-tree class information */
/* Declare a free list to manage the H5D_bt2_ctx_t struct */
H5FL_DEFINE_STATIC(H5D_bt2_ctx_t);
-/* Declare a free list to manage the page elements */
-H5FL_BLK_DEFINE(chunk_dim);
+/* Declare a free list to manage the page elements */
+H5FL_ARR_DEFINE_STATIC(uint32_t, H5O_LAYOUT_NDIMS);
@@ -246,7 +247,7 @@ H5D__bt2_crt_context(void *_udata)
ctx->ndims = udata->ndims;
/* Set up the "local" information for this dataset's chunk dimension sizes */
- if(NULL == (my_dim = (uint32_t *)H5FL_BLK_MALLOC(chunk_dim, H5O_LAYOUT_NDIMS * sizeof(uint32_t))))
+ if(NULL == (my_dim = (uint32_t *)H5FL_ARR_MALLOC(uint32_t, H5O_LAYOUT_NDIMS)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, NULL, "can't allocate chunk dims")
H5MM_memcpy(my_dim, udata->dim, H5O_LAYOUT_NDIMS * sizeof(uint32_t));
ctx->dim = my_dim;
@@ -291,7 +292,7 @@ H5D__bt2_dst_context(void *_ctx)
/* Free array for chunk dimension sizes */
if(ctx->dim)
- (void)H5FL_BLK_FREE(chunk_dim, ctx->dim);
+ H5FL_ARR_FREE(uint32_t, ctx->dim);
/* Release callback context */
ctx = H5FL_FREE(H5D_bt2_ctx_t, ctx);
@@ -1547,7 +1548,7 @@ H5D__bt2_idx_dest(const H5D_chk_idx_info_t *idx_info)
HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't patch v2 B-tree file pointer")
/* Close v2 B-tree */
- if(H5B2_close(idx_info->storage->u.btree2.bt2) < 0)
+ if(H5B2_close(idx_info->storage->u.btree2.bt2) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCLOSEOBJ, FAIL, "can't close v2 B-tree")
idx_info->storage->u.btree2.bt2 = NULL;
} /* end if */
diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c
index a8f22cc..36c47d0 100644
--- a/src/H5Dchunk.c
+++ b/src/H5Dchunk.c
@@ -724,15 +724,18 @@ H5D__chunk_set_info_real(H5O_layout_chunk_t *layout, unsigned ndims,
/* Compute the # of chunks in dataset dimensions */
for(u = 0, layout->nchunks = 1, layout->max_nchunks = 1; u < ndims; u++) {
- /* Sanity check */
- HDassert(layout->dim[u] > 0);
-
/* Round up to the next integer # of chunks, to accommodate partial chunks */
layout->chunks[u] = ((curr_dims[u] + layout->dim[u]) - 1) / layout->dim[u];
if(H5S_UNLIMITED == max_dims[u])
layout->max_chunks[u] = H5S_UNLIMITED;
else
+ {
+ /* Sanity check */
+ if(layout->dim[u] == 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "dimension size must be > 0, dim = %u ", u)
+
layout->max_chunks[u] = ((max_dims[u] + layout->dim[u]) - 1) / layout->dim[u];
+ }
/* Accumulate the # of chunks */
layout->nchunks *= layout->chunks[u];
@@ -1126,21 +1129,19 @@ H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf
if((file_space_normalized = H5S_hyper_normalize_offset((H5S_t *)file_space, old_offset)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "unable to normalize selection")
- /* Decide the number of chunks in each dimension*/
- for(u = 0; u < f_ndims; u++) {
+ /* Decide the number of chunks in each dimension */
+ for(u = 0; u < f_ndims; u++)
/* Keep the size of the chunk dimensions as hsize_t for various routines */
fm->chunk_dim[u] = fm->layout->u.chunk.dim[u];
- } /* end for */
#ifdef H5_HAVE_PARALLEL
/* Calculate total chunk in file map*/
fm->select_chunk = NULL;
if(io_info->using_mpi_vfd) {
H5_CHECK_OVERFLOW(fm->layout->u.chunk.nchunks, hsize_t, size_t);
- if(fm->layout->u.chunk.nchunks) {
+ if(fm->layout->u.chunk.nchunks)
if(NULL == (fm->select_chunk = (H5D_chunk_info_t **)H5MM_calloc((size_t)fm->layout->u.chunk.nchunks * sizeof(H5D_chunk_info_t *))))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate chunk info")
- }
} /* end if */
#endif /* H5_HAVE_PARALLEL */
@@ -1182,10 +1183,9 @@ H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf
HDassert(fm->single_space);
/* Allocate the single chunk information */
- if(NULL == dataset->shared->cache.chunk.single_chunk_info) {
+ if(NULL == dataset->shared->cache.chunk.single_chunk_info)
if(NULL == (dataset->shared->cache.chunk.single_chunk_info = H5FL_MALLOC(H5D_chunk_info_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate chunk info")
- } /* end if */
fm->single_chunk_info = dataset->shared->cache.chunk.single_chunk_info;
HDassert(fm->single_chunk_info);
@@ -1200,10 +1200,9 @@ H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf
hbool_t sel_hyper_flag; /* Whether file selection is a hyperslab */
/* Initialize skip list for chunk selections */
- if(NULL == dataset->shared->cache.chunk.sel_chunks) {
+ if(NULL == dataset->shared->cache.chunk.sel_chunks)
if(NULL == (dataset->shared->cache.chunk.sel_chunks = H5SL_create(H5SL_TYPE_HSIZE, NULL)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTCREATE, FAIL, "can't create skip list for chunk selections")
- } /* end if */
fm->sel_chunks = dataset->shared->cache.chunk.sel_chunks;
HDassert(fm->sel_chunks);
@@ -1298,10 +1297,9 @@ H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf
fm->mchunk_tmpl = tmp_mspace;
/* Create temporary datatypes for selection iteration */
- if(!file_type) {
+ if(!file_type)
if(NULL == (file_type = H5T_copy(dataset->shared->type, H5T_COPY_ALL)))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCOPY, FAIL, "unable to copy file datatype")
- } /* end if */
/* Create selection iterator for memory selection */
if(0 == (elmt_size = H5T_get_size(mem_type)))
@@ -1792,12 +1790,12 @@ static herr_t
H5D__create_chunk_mem_map_hyper(const H5D_chunk_map_t *fm)
{
H5SL_node_t *curr_node; /* Current node in skip list */
- hsize_t file_sel_start[H5O_LAYOUT_NDIMS]; /* Offset of low bound of file selection */
- hsize_t file_sel_end[H5O_LAYOUT_NDIMS]; /* Offset of high bound of file selection */
- hsize_t mem_sel_start[H5O_LAYOUT_NDIMS]; /* Offset of low bound of file selection */
- hsize_t mem_sel_end[H5O_LAYOUT_NDIMS]; /* Offset of high bound of file selection */
- hssize_t adjust[H5O_LAYOUT_NDIMS]; /* Adjustment to make to all file chunks */
- hssize_t chunk_adjust[H5O_LAYOUT_NDIMS]; /* Adjustment to make to a particular chunk */
+ hsize_t file_sel_start[H5S_MAX_RANK]; /* Offset of low bound of file selection */
+ hsize_t file_sel_end[H5S_MAX_RANK]; /* Offset of high bound of file selection */
+ hsize_t mem_sel_start[H5S_MAX_RANK]; /* Offset of low bound of file selection */
+ hsize_t mem_sel_end[H5S_MAX_RANK]; /* Offset of high bound of file selection */
+ hssize_t adjust[H5S_MAX_RANK]; /* Adjustment to make to all file chunks */
+ hssize_t chunk_adjust[H5S_MAX_RANK]; /* Adjustment to make to a particular chunk */
unsigned u; /* Local index variable */
herr_t ret_value = SUCCEED; /* Return value */
@@ -5233,7 +5231,7 @@ H5D__chunk_prune_by_extent(H5D_t *dset, const hsize_t *old_dim)
} /* end if */
else
dims_outside_fill[u] = FALSE;
- } /* end if */
+ } /* end else */
carry = FALSE;
while(!carry) {
@@ -5687,9 +5685,8 @@ H5D__chunk_copy_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata)
/* Check for an edge chunk that is not filtered */
if(pline && pline->nused) {
must_filter = TRUE;
- if( (udata->common.layout->flags & H5O_LAYOUT_CHUNK_DONT_FILTER_PARTIAL_BOUND_CHUNKS) &&
- (H5D__chunk_is_partial_edge_chunk(udata->dset_ndims, udata->common.layout->dim,
- chunk_rec->scaled, udata->dset_dims)) )
+ if((udata->common.layout->flags & H5O_LAYOUT_CHUNK_DONT_FILTER_PARTIAL_BOUND_CHUNKS) &&
+ H5D__chunk_is_partial_edge_chunk(udata->dset_ndims, udata->common.layout->dim, chunk_rec->scaled, udata->dset_dims))
must_filter = FALSE;
}
@@ -6813,7 +6810,7 @@ H5D__chunk_format_convert(H5D_t *dset, H5D_chk_idx_info_t *idx_info, H5D_chk_idx
udata.dset_ndims = dset->shared->ndims;
udata.dset_dims = dset->shared->curr_dims;
- /* terate over the chunks in the current index and insert the chunk addresses into version 1 B-tree index */
+ /* Iterate over the chunks in the current index and insert the chunk addresses into version 1 B-tree index */
if((idx_info->storage->ops->iterate)(idx_info, H5D__chunk_format_convert_cb, &udata) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_BADITER, FAIL, "unable to iterate over chunk index to chunk info")
@@ -6875,8 +6872,8 @@ H5D__get_num_chunks(const H5D_t *dset, const H5S_t H5_ATTR_UNUSED *space, hsize_
{
H5D_chk_idx_info_t idx_info; /* Chunked index info */
hsize_t num_chunks = 0; /* Number of written chunks */
- H5D_rdcc_ent_t *ent; /* Cache entry */
- const H5D_rdcc_t *rdcc = NULL; /* Raw data chunk cache */
+ H5D_rdcc_ent_t *ent; /* Cache entry */
+ const H5D_rdcc_t *rdcc = NULL; /* Raw data chunk cache */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE_TAG(dset->oloc.addr)
@@ -6886,8 +6883,7 @@ H5D__get_num_chunks(const H5D_t *dset, const H5S_t H5_ATTR_UNUSED *space, hsize_
HDassert(space);
HDassert(nchunks);
- /* Get the raw data chunk cache */
- rdcc = &(dset->shared->cache.chunk);
+ rdcc = &(dset->shared->cache.chunk); /* raw data chunk cache */
HDassert(rdcc);
/* Search for cached chunks that haven't been written out */
@@ -6903,28 +6899,27 @@ H5D__get_num_chunks(const H5D_t *dset, const H5S_t H5_ATTR_UNUSED *space, hsize_
idx_info.storage = &dset->shared->layout.storage.u.chunk;
/* If the dataset is not written, number of chunks will be 0 */
- if(!H5F_addr_defined(idx_info.storage->idx_addr)) {
+ if(!H5F_addr_defined(idx_info.storage->idx_addr))
*nchunks = 0;
- HGOTO_DONE(SUCCEED);
- }
else {
- /* Iterate over the allocated chunks */
- if((dset->shared->layout.storage.u.chunk.ops->iterate)(&idx_info, H5D__get_num_chunks_cb, &num_chunks) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve allocated chunk information from index")
- *nchunks = num_chunks;
+ /* Iterate over the allocated chunks */
+ if((dset->shared->layout.storage.u.chunk.ops->iterate)(&idx_info, H5D__get_num_chunks_cb, &num_chunks) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve allocated chunk information from index")
+ *nchunks = num_chunks;
}
done:
- FUNC_LEAVE_NOAPI(ret_value)
+ FUNC_LEAVE_NOAPI_TAG(ret_value)
} /* end H5D__get_num_chunks() */
/*-------------------------------------------------------------------------
* Function: H5D__get_chunk_info_cb
*
- * Purpose: Get the chunk info of the desired chunk, given by its index.
+ * Purpose: Get the chunk info of the queried chunk, given by its index.
*
* Return: Success: H5_ITER_CONT or H5_ITER_STOP
+ * H5_ITER_STOP indicates the queried chunk is found
* Failure: Negative (H5_ITER_ERROR)
*
* Programmer: Binh-Minh Ribler
@@ -6936,8 +6931,7 @@ static int
H5D__get_chunk_info_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata)
{
H5D_chunk_info_iter_ud_t *chunk_info = (H5D_chunk_info_iter_ud_t *)_udata;
- hsize_t ii = 0; /* Dimension index */
- int ret_value = H5_ITER_CONT; /* Callback return value */
+ int ret_value = H5_ITER_CONT; /* Callback return value */
FUNC_ENTER_STATIC_NOERR
@@ -6945,19 +6939,22 @@ H5D__get_chunk_info_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata)
HDassert(chunk_rec);
HDassert(chunk_info);
- /* If this is the desired chunk, retrieve its info and stop iterating */
- if (chunk_info->curr_idx == chunk_info->chunk_idx) {
+ /* If this is the queried chunk, retrieve its info and stop iterating */
+ if(chunk_info->curr_idx == chunk_info->chunk_idx) {
+ hsize_t ii = 0; /* Dimension index */
+
+ /* Copy info */
chunk_info->filter_mask = chunk_rec->filter_mask;
chunk_info->chunk_addr = chunk_rec->chunk_addr;
chunk_info->nbytes = chunk_rec->nbytes;
- for (ii = 0; ii < chunk_info->ndims; ii++)
+ for(ii = 0; ii < chunk_info->ndims; ii++)
chunk_info->scaled[ii] = chunk_rec->scaled[ii];
chunk_info->found = TRUE;
/* Stop iterating */
ret_value = H5_ITER_STOP;
}
- /* Iterate the next chunk */
+ /* Go to the next chunk */
else
chunk_info->curr_idx++;
@@ -7147,18 +7144,18 @@ H5D__get_chunk_info_by_coord(const H5D_t *dset, const hsize_t *offset, unsigned*
if(H5D__chunk_flush_entry(dset, ent, FALSE) < 0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "cannot flush indexed storage buffer")
+ /* Set addr & size for when dset is not written or queried chunk is not found */
+ if(addr)
+ *addr = HADDR_UNDEF;
+ if(size)
+ *size = 0;
+
/* Compose chunked index info struct */
idx_info.f = dset->oloc.file;
idx_info.pline = &dset->shared->dcpl_cache.pline;
idx_info.layout = &dset->shared->layout.u.chunk;
idx_info.storage = &dset->shared->layout.storage.u.chunk;
- /* Set addr & size for when dset is not written or queried chunk is not found */
- if (addr)
- *addr = HADDR_UNDEF;
- if (size)
- *size = 0;
-
/* If the dataset is not written, return without errors */
if(!H5F_addr_defined(idx_info.storage->idx_addr)) {
HGOTO_DONE(SUCCEED);
diff --git a/src/H5Ddbg.c b/src/H5Ddbg.c
index 347e34c..7220868 100644
--- a/src/H5Ddbg.c
+++ b/src/H5Ddbg.c
@@ -21,11 +21,11 @@
/***********/
/* Headers */
/***********/
-#include "H5private.h" /* Generic Functions */
-#include "H5CXprivate.h" /* API Contexts */
-#include "H5Dpkg.h" /* Datasets */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5Iprivate.h" /* IDs */
+#include "H5private.h" /* Generic Functions */
+#include "H5CXprivate.h" /* API Contexts */
+#include "H5Dpkg.h" /* Datasets */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5Iprivate.h" /* IDs */
/****************/
@@ -60,17 +60,12 @@
/*-------------------------------------------------------------------------
- * Function: H5Ddebug
+ * Function: H5Ddebug
*
- * Purpose: Prints various information about a dataset. This function is
- * not to be documented in the API at this time.
+ * Purpose: Prints various information about a dataset. This function is
+ * not to be documented in the API at this time.
*
- * Return: Success: Non-negative
- *
- * Failure: Negative
- *
- * Programmer: Robb Matzke
- * Wednesday, April 28, 1999
+ * Return: SUCCEED/FAIL
*
*-------------------------------------------------------------------------
*/
@@ -85,13 +80,13 @@ H5Ddebug(hid_t dset_id)
/* Check args */
if(NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset")
/* Print B-tree information */
if(H5D_CHUNKED == dset->shared->layout.type)
- (void)H5D__chunk_dump_index(dset, stdout);
+ (void)H5D__chunk_dump_index(dset, stdout);
else if(H5D_CONTIGUOUS == dset->shared->layout.type)
- HDfprintf(stdout, " %-10s %a\n", "Address:", dset->shared->layout.storage.u.contig.addr);
+ HDfprintf(stdout, " %-10s %a\n", "Address:", dset->shared->layout.storage.u.contig.addr);
done:
FUNC_LEAVE_API(ret_value)
diff --git a/src/H5Dearray.c b/src/H5Dearray.c
index 2e32494..a53489e 100644
--- a/src/H5Dearray.c
+++ b/src/H5Dearray.c
@@ -11,10 +11,10 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-/* Programmer: Quincey Koziol <koziol@hdfgroup.org>
- * Tuesday, January 27, 2009
+/* Programmer: Quincey Koziol
+ * Tuesday, January 27, 2009
*
- * Purpose: Extensible array indexed (chunked) I/O functions. The chunks
+ * Purpose: Extensible array indexed (chunked) I/O functions. The chunks
* are given a single-dimensional index which is used as the
* offset in an extensible array that maps a chunk coordinate to
* a disk address.
@@ -31,13 +31,14 @@
/***********/
/* Headers */
/***********/
-#include "H5private.h" /* Generic Functions */
-#include "H5Dpkg.h" /* Datasets */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5EAprivate.h" /* Extensible arrays */
-#include "H5FLprivate.h" /* Free Lists */
-#include "H5MFprivate.h" /* File space management */
-#include "H5VMprivate.h" /* Vector functions */
+#include "H5private.h" /* Generic Functions */
+#include "H5Dpkg.h" /* Datasets */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5EAprivate.h" /* Extensible arrays */
+#include "H5FLprivate.h" /* Free Lists */
+#include "H5MFprivate.h" /* File space management */
+#include "H5MMprivate.h" /* Memory management */
+#include "H5VMprivate.h" /* Vector functions */
/****************/
@@ -182,7 +183,7 @@ const H5EA_class_t H5EA_CLS_CHUNK[1]={{
H5D__earray_fill, /* Fill block of missing elements callback */
H5D__earray_encode, /* Element encoding callback */
H5D__earray_decode, /* Element decoding callback */
- H5D__earray_debug, /* Element debugging callback */
+ H5D__earray_debug, /* Element debugging callback */
H5D__earray_crt_dbg_context, /* Create debugging context */
H5D__earray_dst_dbg_context /* Destroy debugging context */
}};
@@ -213,16 +214,16 @@ H5FL_DEFINE_STATIC(H5D_earray_ctx_t);
H5FL_DEFINE_STATIC(H5D_earray_ctx_ud_t);
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_crt_context
*
- * Purpose: Create context for callbacks
+ * Purpose: Create context for callbacks
*
- * Return: Success: non-NULL
- * Failure: NULL
+ * Return: Success: non-NULL
+ * Failure: NULL
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -262,16 +263,16 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_crt_context() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_dst_context
*
- * Purpose: Destroy context for callbacks
+ * Purpose: Destroy context for callbacks
*
- * Return: Success: non-NULL
- * Failure: NULL
+ * Return: Success: non-NULL
+ * Failure: NULL
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -292,7 +293,7 @@ H5D__earray_dst_context(void *_ctx)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__earray_dst_context() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_fill
*
@@ -322,16 +323,16 @@ H5D__earray_fill(void *nat_blk, size_t nelmts)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__earray_fill() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_encode
*
- * Purpose: Encode an element from "native" to "raw" form
+ * Purpose: Encode an element from "native" to "raw" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, January 27, 2009
*
*-------------------------------------------------------------------------
@@ -366,16 +367,16 @@ H5D__earray_encode(void *raw, const void *_elmt, size_t nelmts, void *_ctx)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__earray_encode() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_decode
*
- * Purpose: Decode an element from "raw" to "native" form
+ * Purpose: Decode an element from "raw" to "native" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -410,16 +411,16 @@ H5D__earray_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__earray_decode() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_debug
*
- * Purpose: Display an element for debugging
+ * Purpose: Display an element for debugging
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -444,16 +445,16 @@ H5D__earray_debug(FILE *stream, int indent, int fwidth, hsize_t idx,
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__earray_debug() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_filt_fill
*
- * Purpose: Fill "missing elements" in block of elements
+ * Purpose: Fill "missing elements" in block of elements
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -475,16 +476,16 @@ H5D__earray_filt_fill(void *nat_blk, size_t nelmts)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__earray_filt_fill() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_filt_encode
*
- * Purpose: Encode an element from "native" to "raw" form
+ * Purpose: Encode an element from "native" to "raw" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -522,16 +523,16 @@ H5D__earray_filt_encode(void *_raw, const void *_elmt, size_t nelmts, void *_ctx
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__earray_filt_encode() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_filt_decode
*
- * Purpose: Decode an element from "raw" to "native" form
+ * Purpose: Decode an element from "raw" to "native" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -568,16 +569,16 @@ H5D__earray_filt_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__earray_filt_decode() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_filt_debug
*
- * Purpose: Display an element for debugging
+ * Purpose: Display an element for debugging
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -603,24 +604,24 @@ H5D__earray_filt_debug(FILE *stream, int indent, int fwidth, hsize_t idx,
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__earray_filt_debug() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_crt_dbg_context
*
- * Purpose: Create context for debugging callback
- * (get the layout message in the specified object header)
+ * Purpose: Create context for debugging callback
+ * (get the layout message in the specified object header)
*
- * Return: Success: non-NULL
- * Failure: NULL
+ * Return: Success: non-NULL
+ * Failure: NULL
*
- * Programmer: Vailin Choi; July 2010
+ * Programmer: Vailin Choi; July 2010
*
*-------------------------------------------------------------------------
*/
static void *
H5D__earray_crt_dbg_context(H5F_t *f, haddr_t obj_addr)
{
- H5D_earray_ctx_ud_t *dbg_ctx = NULL; /* Context for fixed array callback */
+ H5D_earray_ctx_ud_t *dbg_ctx = NULL; /* Context for fixed array callback */
H5O_loc_t obj_loc; /* Pointer to an object's location */
hbool_t obj_opened = FALSE; /* Flag to indicate that the object header was opened */
H5O_layout_t layout; /* Layout message */
@@ -677,24 +678,24 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_crt_dbg_context() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_dst_dbg_context
*
- * Purpose: Destroy context for debugging callback
- * (free the layout message from the specified object header)
+ * Purpose: Destroy context for debugging callback
+ * (free the layout message from the specified object header)
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi; July 2010
+ * Programmer: Vailin Choi; July 2010
*
*-------------------------------------------------------------------------
*/
static herr_t
H5D__earray_dst_dbg_context(void *_dbg_ctx)
{
- H5D_earray_ctx_ud_t *dbg_ctx = (H5D_earray_ctx_ud_t *)_dbg_ctx; /* Context for extensible array callback */
+ H5D_earray_ctx_ud_t *dbg_ctx = (H5D_earray_ctx_ud_t *)_dbg_ctx; /* Context for extensible array callback */
FUNC_ENTER_STATIC_NOERR
@@ -707,18 +708,18 @@ H5D__earray_dst_dbg_context(void *_dbg_ctx)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__earray_dst_dbg_context() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_depend
*
- * Purpose: Create flush dependency between extensible array and dataset's
+ * Purpose: Create flush dependency between extensible array and dataset's
* object header.
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
- * Tuesday, June 2, 2009
+ * Programmer: Quincey Koziol
+ * Tuesday, June 2, 2009
*
*-------------------------------------------------------------------------
*/
@@ -769,22 +770,22 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_idx_depend() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_open
*
- * Purpose: Opens an existing extensible array.
+ * Purpose: Opens an existing extensible array.
*
- * Note: This information is passively initialized from each index
+ * Note: This information is passively initialized from each index
* operation callback because those abstract chunk index operations
* are designed to work with the v1 B-tree chunk indices also,
* which don't require an 'open' for the data structure.
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
- * Thursday, January 29, 2009
+ * Programmer: Quincey Koziol
+ * Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
*/
@@ -813,7 +814,7 @@ H5D__earray_idx_open(const H5D_chk_idx_info_t *idx_info)
/* Open the extensible array for the chunk index */
if(NULL == (idx_info->storage->u.earray.ea = H5EA_open(idx_info->f, idx_info->storage->idx_addr, &udata)))
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open extensible array")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open extensible array")
/* Check for SWMR writes to the file */
if(H5F_INTENT(idx_info->f) & H5F_ACC_SWMR_WRITE)
@@ -824,15 +825,15 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_idx_open() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_init
*
- * Purpose: Initialize the indexing information for a dataset.
+ * Purpose: Initialize the indexing information for a dataset.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Wednesday, May 27, 2009
*
*-------------------------------------------------------------------------
@@ -861,7 +862,7 @@ H5D__earray_idx_init(const H5D_chk_idx_info_t *idx_info, const H5S_t *space,
/* Get the dim info for dataset */
if((sndims = H5S_get_simple_extent_dims(space, NULL, max_dims)) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataspace dimensions")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataspace dimensions")
H5_CHECKED_ASSIGN(ndims, unsigned, sndims, int);
/* Find the rank of the unlimited dimension */
@@ -892,22 +893,22 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_idx_init() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_create
*
- * Purpose: Creates a new indexed-storage extensible array and initializes
+ * Purpose: Creates a new indexed-storage extensible array and initializes
* the layout struct with information about the storage. The
- * struct should be immediately written to the object header.
+ * struct should be immediately written to the object header.
*
- * This function must be called before passing LAYOUT to any of
- * the other indexed storage functions!
+ * This function must be called before passing LAYOUT to any of
+ * the other indexed storage functions!
*
- * Return: Non-negative on success (with the LAYOUT argument initialized
- * and ready to write to an object header). Negative on failure.
+ * Return: Non-negative on success (with the LAYOUT argument initialized
+ * and ready to write to an object header). Negative on failure.
*
- * Programmer: Quincey Koziol
- * Tuesday, January 27, 2009
+ * Programmer: Quincey Koziol
+ * Tuesday, January 27, 2009
*
*-------------------------------------------------------------------------
*/
@@ -964,11 +965,11 @@ H5D__earray_idx_create(const H5D_chk_idx_info_t *idx_info)
/* Create the extensible array for the chunk index */
if(NULL == (idx_info->storage->u.earray.ea = H5EA_create(idx_info->f, &cparam, &udata)))
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create extensible array")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create extensible array")
/* Get the address of the extensible array in file */
if(H5EA_get_addr(idx_info->storage->u.earray.ea, &(idx_info->storage->idx_addr)) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array address")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array address")
/* Check for SWMR writes to the file */
if(H5F_INTENT(idx_info->f) & H5F_ACC_SWMR_WRITE)
@@ -979,16 +980,16 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_idx_create() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_is_space_alloc
*
- * Purpose: Query if space is allocated for index method
+ * Purpose: Query if space is allocated for index method
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
- * Thursday, January 29, 2009
+ * Programmer: Quincey Koziol
+ * Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
*/
@@ -1003,15 +1004,15 @@ H5D__earray_idx_is_space_alloc(const H5O_storage_chunk_t *storage)
FUNC_LEAVE_NOAPI((hbool_t)H5F_addr_defined(storage->idx_addr))
} /* end H5D__earray_idx_is_space_alloc() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_insert
*
- * Purpose: Insert chunk address into the indexing structure.
+ * Purpose: Insert chunk address into the indexing structure.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Vailin Choi; May 2014
+ * Programmer: Vailin Choi; May 2014
*
*-------------------------------------------------------------------------
*/
@@ -1045,43 +1046,43 @@ H5D__earray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata
ea = idx_info->storage->u.earray.ea;
if(!H5F_addr_defined(udata->chunk_block.offset))
- HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "The chunk should have allocated already")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "The chunk should have allocated already")
if(udata->chunk_idx != (udata->chunk_idx & 0xffffffff)) /* negative value */
- HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "chunk index must be less than 2^32")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "chunk index must be less than 2^32")
/* Check for filters on chunks */
if(idx_info->pline->nused > 0) {
- H5D_earray_filt_elmt_t elmt; /* Extensible array element */
+ H5D_earray_filt_elmt_t elmt; /* Extensible array element */
- elmt.addr = udata->chunk_block.offset;
+ elmt.addr = udata->chunk_block.offset;
H5_CHECKED_ASSIGN(elmt.nbytes, uint32_t, udata->chunk_block.length, hsize_t);
- elmt.filter_mask = udata->filter_mask;
+ elmt.filter_mask = udata->filter_mask;
- /* Set the info for the chunk */
- if(H5EA_set(ea, udata->chunk_idx, &elmt) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk info")
+ /* Set the info for the chunk */
+ if(H5EA_set(ea, udata->chunk_idx, &elmt) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk info")
} /* end if */
else {
- /* Set the address for the chunk */
- if(H5EA_set(ea, udata->chunk_idx, &udata->chunk_block.offset) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk address")
+ /* Set the address for the chunk */
+ if(H5EA_set(ea, udata->chunk_idx, &udata->chunk_block.offset) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk address")
} /* end else */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5D__earray_idx_insert() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_get_addr
*
- * Purpose: Get the file address of a chunk if file space has been
- * assigned. Save the retrieved information in the udata
- * supplied.
+ * Purpose: Get the file address of a chunk if file space has been
+ * assigned. Save the retrieved information in the udata
+ * supplied.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -1091,7 +1092,7 @@ H5D__earray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda
{
H5EA_t *ea; /* Pointer to extensible array structure */
hsize_t idx; /* Array index of chunk */
- herr_t ret_value = SUCCEED; /* Return value */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
@@ -1119,11 +1120,11 @@ H5D__earray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda
if(idx_info->layout->u.earray.unlim_dim > 0) {
hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */
unsigned ndims = (idx_info->layout->ndims - 1); /* Number of dimensions */
- unsigned u;
+ unsigned u;
- /* Compute coordinate offset from scaled offset */
- for(u = 0; u < ndims; u++)
- swizzled_coords[u] = udata->common.scaled[u] * idx_info->layout->dim[u];
+ /* Compute coordinate offset from scaled offset */
+ for(u = 0; u < ndims; u++)
+ swizzled_coords[u] = udata->common.scaled[u] * idx_info->layout->dim[u];
H5VM_swizzle_coords(hsize_t, swizzled_coords, idx_info->layout->u.earray.unlim_dim);
@@ -1156,27 +1157,27 @@ H5D__earray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get chunk address")
/* Update the other (constant) information for the chunk */
- udata->chunk_block.length = idx_info->layout->size;
+ udata->chunk_block.length = idx_info->layout->size;
udata->filter_mask = 0;
} /* end else */
if(!H5F_addr_defined(udata->chunk_block.offset))
- udata->chunk_block.length = 0;
+ udata->chunk_block.length = 0;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5D__earray_idx_get_addr() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_resize
*
- * Purpose: Calculate/setup the swizzled down chunk array, used for chunk
+ * Purpose: Calculate/setup the swizzled down chunk array, used for chunk
* index calculations.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, July 23, 2009
*
*-------------------------------------------------------------------------
@@ -1221,15 +1222,15 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_idx_resize() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_iterate_cb
*
- * Purpose: Callback routine for extensible array element iteration.
+ * Purpose: Callback routine for extensible array element iteration.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Vailin Choi; Feb 2015
+ * Programmer: Vailin Choi; Feb 2015
*
*-------------------------------------------------------------------------
*/
@@ -1256,8 +1257,8 @@ H5D__earray_idx_iterate_cb(hsize_t H5_ATTR_UNUSED idx, const void *_elmt, void *
/* Make "generic chunk" callback */
if(H5F_addr_defined(udata->chunk_rec.chunk_addr))
- if((ret_value = (udata->cb)(&udata->chunk_rec, udata->udata)) < 0)
- HERROR(H5E_DATASET, H5E_CALLBACK, "failure in generic chunk iterator callback");
+ if((ret_value = (udata->cb)(&udata->chunk_rec, udata->udata)) < 0)
+ HERROR(H5E_DATASET, H5E_CALLBACK, "failure in generic chunk iterator callback");
/* Update coordinates of chunk in dataset */
ndims = udata->common.layout->ndims - 1;
@@ -1280,20 +1281,20 @@ H5D__earray_idx_iterate_cb(hsize_t H5_ATTR_UNUSED idx, const void *_elmt, void *
FUNC_LEAVE_NOAPI(ret_value)
} /* H5D__earray_idx_iterate_cb() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_iterate
*
- * Purpose: Iterate over the chunks in an index, making a callback
+ * Purpose: Iterate over the chunks in an index, making a callback
* for each one.
*
- * Note: This implementation is slow, particularly for sparse
+ * Note: This implementation is slow, particularly for sparse
* extensible arrays, replace it with call to H5EA_iterate()
* when that's available.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -1331,42 +1332,42 @@ H5D__earray_idx_iterate(const H5D_chk_idx_info_t *idx_info,
/* Get the extensible array statistics */
if(H5EA_get_stats(ea, &ea_stat) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics")
if(ea_stat.stored.max_idx_set > 0) {
H5D_earray_it_ud_t udata; /* User data for iteration callback */
- /* Initialize userdata */
- HDmemset(&udata, 0, sizeof udata);
- udata.common.layout = idx_info->layout;
- udata.common.storage = idx_info->storage;
+ /* Initialize userdata */
+ HDmemset(&udata, 0, sizeof udata);
+ udata.common.layout = idx_info->layout;
+ udata.common.storage = idx_info->storage;
HDmemset(&udata.chunk_rec, 0, sizeof(udata.chunk_rec));
udata.filtered = (idx_info->pline->nused > 0);
if(!udata.filtered) {
udata.chunk_rec.nbytes = idx_info->layout->size;
udata.chunk_rec.filter_mask = 0;
} /* end if */
- udata.cb = chunk_cb;
- udata.udata = chunk_udata;
+ udata.cb = chunk_cb;
+ udata.udata = chunk_udata;
/* Iterate over the extensible array elements */
- if((ret_value = H5EA_iterate(ea, H5D__earray_idx_iterate_cb, &udata)) < 0)
- HERROR(H5E_DATASET, H5E_BADITER, "unable to iterate over fixed array chunk index");
+ if((ret_value = H5EA_iterate(ea, H5D__earray_idx_iterate_cb, &udata)) < 0)
+ HERROR(H5E_DATASET, H5E_BADITER, "unable to iterate over fixed array chunk index");
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_idx_iterate() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_remove
*
- * Purpose: Remove chunk from index.
+ * Purpose: Remove chunk from index.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -1376,7 +1377,7 @@ H5D__earray_idx_remove(const H5D_chk_idx_info_t *idx_info, H5D_chunk_common_ud_t
{
H5EA_t *ea; /* Pointer to extensible array structure */
hsize_t idx; /* Array index of chunk */
- herr_t ret_value = SUCCEED; /* Return value */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
@@ -1405,11 +1406,11 @@ H5D__earray_idx_remove(const H5D_chk_idx_info_t *idx_info, H5D_chunk_common_ud_t
if(idx_info->layout->u.earray.unlim_dim > 0) {
hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */
unsigned ndims = (idx_info->layout->ndims - 1); /* Number of dimensions */
- unsigned u;
+ unsigned u;
- /* Compute coordinate offset from scaled offset */
- for(u = 0; u < ndims; u++)
- swizzled_coords[u] = udata->scaled[u] * idx_info->layout->dim[u];
+ /* Compute coordinate offset from scaled offset */
+ for(u = 0; u < ndims; u++)
+ swizzled_coords[u] = udata->scaled[u] * idx_info->layout->dim[u];
H5VM_swizzle_coords(hsize_t, swizzled_coords, idx_info->layout->u.earray.unlim_dim);
@@ -1469,16 +1470,16 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5D__earray_idx_remove() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_delete_cb
*
- * Purpose: Delete space for chunk in file
+ * Purpose: Delete space for chunk in file
*
- * Return: Success: Non-negative
- * Failure: negative
+ * Return: Success: Non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -1506,21 +1507,21 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_idx_delete_cb() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_delete
*
- * Purpose: Delete index and raw data storage for entire dataset
+ * Purpose: Delete index and raw data storage for entire dataset
* (i.e. all chunks)
*
- * Note: This implementation is slow, particularly for sparse
+ * Note: This implementation is slow, particularly for sparse
* extensible arrays, replace it with call to H5EA_iterate()
* when that's available.
*
- * Return: Success: Non-negative
- * Failure: negative
+ * Return: Success: Non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -1568,15 +1569,15 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_idx_delete() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_copy_setup
*
- * Purpose: Set up any necessary information for copying chunks
+ * Purpose: Set up any necessary information for copying chunks
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -1623,15 +1624,15 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_idx_copy_setup() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_copy_shutdown
*
- * Purpose: Shutdown any information from copying chunks
+ * Purpose: Shutdown any information from copying chunks
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -1662,7 +1663,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_idx_copy_shutdown() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_size
*
@@ -1703,7 +1704,7 @@ H5D__earray_idx_size(const H5D_chk_idx_info_t *idx_info, hsize_t *index_size)
/* Get the extensible array statistics */
if(H5EA_get_stats(ea, &ea_stat) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics")
/* Set the size of the extensible array */
*index_size = ea_stat.computed.hdr_size + ea_stat.computed.index_blk_size
@@ -1719,15 +1720,15 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__earray_idx_size() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_reset
*
- * Purpose: Reset indexing information.
+ * Purpose: Reset indexing information.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -1742,7 +1743,7 @@ H5D__earray_idx_reset(H5O_storage_chunk_t *storage, hbool_t reset_addr)
/* Reset index info */
if(reset_addr) {
- storage->idx_addr = HADDR_UNDEF;
+ storage->idx_addr = HADDR_UNDEF;
storage->u.earray.dset_ohdr_addr = HADDR_UNDEF;
} /* end if */
storage->u.earray.ea = NULL;
@@ -1750,15 +1751,15 @@ H5D__earray_idx_reset(H5O_storage_chunk_t *storage, hbool_t reset_addr)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__earray_idx_reset() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_dump
*
- * Purpose: Dump indexing information to a stream.
+ * Purpose: Dump indexing information to a stream.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -1777,15 +1778,15 @@ H5D__earray_idx_dump(const H5O_storage_chunk_t *storage, FILE *stream)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__earray_idx_dump() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__earray_idx_dest
*
- * Purpose: Release indexing information in memory.
+ * Purpose: Release indexing information in memory.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -1805,7 +1806,7 @@ H5D__earray_idx_dest(const H5D_chk_idx_info_t *idx_info)
/* Check if the extensible array is open */
if(idx_info->storage->u.earray.ea) {
- /* Patch the top level file pointer contained in ea if needed */
+ /* Patch the top level file pointer contained in ea if needed */
if(H5EA_patch_file(idx_info->storage->u.earray.ea, idx_info->f) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't patch earray file pointer")
diff --git a/src/H5Dfarray.c b/src/H5Dfarray.c
index c4a3d4b..a9202c2 100644
--- a/src/H5Dfarray.c
+++ b/src/H5Dfarray.c
@@ -263,12 +263,12 @@ done:
/*-------------------------------------------------------------------------
* Function: H5D__farray_dst_context
*
- * Purpose: Destroy context for callbacks
+ * Purpose: Destroy context for callbacks
*
- * Return: Success: non-NULL
- * Failure: NULL
+ * Return: Success: non-NULL
+ * Failure: NULL
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -293,12 +293,12 @@ H5D__farray_dst_context(void *_ctx)
/*-------------------------------------------------------------------------
* Function: H5D__farray_fill
*
- * Purpose: Fill "missing elements" in block of elements
+ * Purpose: Fill "missing elements" in block of elements
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -323,12 +323,12 @@ H5D__farray_fill(void *nat_blk, size_t nelmts)
/*-------------------------------------------------------------------------
* Function: H5D__farray_encode
*
- * Purpose: Encode an element from "native" to "raw" form
+ * Purpose: Encode an element from "native" to "raw" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -367,12 +367,12 @@ H5D__farray_encode(void *raw, const void *_elmt, size_t nelmts, void *_ctx)
/*-------------------------------------------------------------------------
* Function: H5D__farray_decode
*
- * Purpose: Decode an element from "raw" to "native" form
+ * Purpose: Decode an element from "raw" to "native" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -411,12 +411,12 @@ H5D__farray_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx)
/*-------------------------------------------------------------------------
* Function: H5D__farray_debug
*
- * Purpose: Display an element for debugging
+ * Purpose: Display an element for debugging
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -445,21 +445,21 @@ H5D__farray_debug(FILE *stream, int indent, int fwidth, hsize_t idx,
/*-------------------------------------------------------------------------
* Function: H5D__farray_crt_dbg_context
*
- * Purpose: Create context for debugging callback
- * (get the layout message in the specified object header)
+ * Purpose: Create context for debugging callback
+ * (get the layout message in the specified object header)
*
- * Return: Success: non-NULL
- * Failure: NULL
+ * Return: Success: non-NULL
+ * Failure: NULL
*
- * Programmer: Vailin Choi
- * 5th August, 2009
+ * Programmer: Vailin Choi
+ * 5th August, 2009
*
*-------------------------------------------------------------------------
*/
static void *
H5D__farray_crt_dbg_context(H5F_t *f, haddr_t obj_addr)
{
- H5D_farray_ctx_ud_t *dbg_ctx = NULL; /* Context for fixed array callback */
+ H5D_farray_ctx_ud_t *dbg_ctx = NULL; /* Context for fixed array callback */
H5O_loc_t obj_loc; /* Pointer to an object's location */
hbool_t obj_opened = FALSE; /* Flag to indicate that the object header was opened */
H5O_layout_t layout; /* Layout message */
@@ -520,14 +520,14 @@ done:
/*-------------------------------------------------------------------------
* Function: H5D__farray_dst_dbg_context
*
- * Purpose: Destroy context for debugging callback
- * (free the layout message from the specified object header)
+ * Purpose: Destroy context for debugging callback
+ * (free the layout message from the specified object header)
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
- * 24th September, 2009
+ * Programmer: Quincey Koziol
+ * 24th September, 2009
*
*-------------------------------------------------------------------------
*/
@@ -551,12 +551,12 @@ H5D__farray_dst_dbg_context(void *_dbg_ctx)
/*-------------------------------------------------------------------------
* Function: H5D__farray_filt_fill
*
- * Purpose: Fill "missing elements" in block of elements
+ * Purpose: Fill "missing elements" in block of elements
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -582,12 +582,12 @@ H5D__farray_filt_fill(void *nat_blk, size_t nelmts)
/*-------------------------------------------------------------------------
* Function: H5D__farray_filt_encode
*
- * Purpose: Encode an element from "native" to "raw" form
+ * Purpose: Encode an element from "native" to "raw" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -629,12 +629,12 @@ H5D__farray_filt_encode(void *_raw, const void *_elmt, size_t nelmts, void *_ctx
/*-------------------------------------------------------------------------
* Function: H5D__farray_filt_decode
*
- * Purpose: Decode an element from "raw" to "native" form
+ * Purpose: Decode an element from "raw" to "native" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -675,12 +675,12 @@ H5D__farray_filt_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx
/*-------------------------------------------------------------------------
* Function: H5D__farray_filt_debug
*
- * Purpose: Display an element for debugging
+ * Purpose: Display an element for debugging
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -710,13 +710,13 @@ H5D__farray_filt_debug(FILE *stream, int indent, int fwidth, hsize_t idx,
/*-------------------------------------------------------------------------
* Function: H5D__farray_idx_depend
*
- * Purpose: Create flush dependency between fixed array and dataset's
+ * Purpose: Create flush dependency between fixed array and dataset's
* object header.
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -800,13 +800,13 @@ H5D__farray_idx_init(const H5D_chk_idx_info_t *idx_info, const H5S_t H5_ATTR_UNU
/*-------------------------------------------------------------------------
* Function: H5D__farray_idx_open
*
- * Purpose: Opens an existing fixed array and initializes
+ * Purpose: Opens an existing fixed array and initializes
* the layout struct with information about the storage.
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -851,17 +851,17 @@ done:
/*-------------------------------------------------------------------------
* Function: H5D__farray_idx_create
*
- * Purpose: Creates a new indexed-storage fixed array and initializes
+ * Purpose: Creates a new indexed-storage fixed array and initializes
* the layout struct with information about the storage. The
- * struct should be immediately written to the object header.
+ * struct should be immediately written to the object header.
*
- * This function must be called before passing LAYOUT to any of
- * the other indexed storage functions!
+ * This function must be called before passing LAYOUT to any of
+ * the other indexed storage functions!
*
- * Return: Non-negative on success (with the LAYOUT argument initialized
- * and ready to write to an object header). Negative on failure.
+ * Return: Non-negative on success (with the LAYOUT argument initialized
+ * and ready to write to an object header). Negative on failure.
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -932,11 +932,11 @@ done:
/*-------------------------------------------------------------------------
* Function: H5D__farray_idx_is_space_alloc
*
- * Purpose: Query if space is allocated for index method
+ * Purpose: Query if space is allocated for index method
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -956,11 +956,11 @@ H5D__farray_idx_is_space_alloc(const H5O_storage_chunk_t *storage)
/*-------------------------------------------------------------------------
* Function: H5D__farray_idx_insert
*
- * Purpose: Insert chunk address into the indexing structure.
+ * Purpose: Insert chunk address into the indexing structure.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Vailin Choi; 5 May 2014
+ * Programmer: Vailin Choi; 5 May 2014
*
*-------------------------------------------------------------------------
*/
@@ -969,7 +969,7 @@ H5D__farray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata
const H5D_t H5_ATTR_UNUSED *dset)
{
H5FA_t *fa; /* Pointer to fixed array structure */
- herr_t ret_value = SUCCEED; /* Return value */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
diff --git a/src/H5Dfill.c b/src/H5Dfill.c
index 0cd8803..e67926c 100644
--- a/src/H5Dfill.c
+++ b/src/H5Dfill.c
@@ -38,6 +38,7 @@
#include "H5Eprivate.h" /* Error handling */
#include "H5FLprivate.h" /* Free Lists */
#include "H5Iprivate.h" /* IDs */
+#include "H5MMprivate.h" /* Memory management */
#include "H5VMprivate.h" /* Vector and array functions */
#include "H5WBprivate.h" /* Wrapped Buffers */
@@ -174,7 +175,7 @@ done:
--------------------------------------------------------------------------*/
herr_t
H5D__fill(const void *fill, const H5T_t *fill_type, void *buf,
- const H5T_t *buf_type, const H5S_t *space)
+ const H5T_t *buf_type, const H5S_t *space)
{
H5S_sel_iter_t *mem_iter = NULL; /* Memory selection iteration info */
hbool_t mem_iter_init = FALSE; /* Whether the memory selection iterator has been initialized */
@@ -248,12 +249,11 @@ H5D__fill(const void *fill, const H5T_t *fill_type, void *buf,
* of the VL data.
*/
if(TRUE == H5T_detect_class(fill_type, H5T_VLEN, FALSE)) {
- hssize_t nelmts; /* Number of data elements */
+ hsize_t nelmts; /* Number of data elements */
/* Get the number of elements in the selection */
nelmts = H5S_GET_SELECT_NPOINTS(space);
- HDassert(nelmts >= 0);
- H5_CHECK_OVERFLOW(nelmts, hssize_t, size_t);
+ H5_CHECK_OVERFLOW(nelmts, hsize_t, size_t);
/* Allocate a temporary buffer */
if(NULL == (tmp_buf = H5FL_BLK_MALLOC(type_conv, (size_t)nelmts * buf_size)))
diff --git a/src/H5Dio.c b/src/H5Dio.c
index 39112c7..7762a5a 100644
--- a/src/H5Dio.c
+++ b/src/H5Dio.c
@@ -21,14 +21,14 @@
/***********/
/* Headers */
/***********/
-#include "H5private.h" /* Generic Functions */
-#include "H5CXprivate.h" /* API Contexts */
-#include "H5Dpkg.h" /* Dataset functions */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5FLprivate.h" /* Free Lists */
-#include "H5Iprivate.h" /* IDs */
-#include "H5MMprivate.h" /* Memory management */
-#include "H5Sprivate.h" /* Dataspace */
+#include "H5private.h" /* Generic Functions */
+#include "H5CXprivate.h" /* API Contexts */
+#include "H5Dpkg.h" /* Dataset functions */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5FLprivate.h" /* Free Lists */
+#include "H5Iprivate.h" /* IDs */
+#include "H5MMprivate.h" /* Memory management */
+#include "H5Sprivate.h" /* Dataspace */
#ifdef H5_HAVE_PARALLEL
/* Remove this if H5R_DATASET_REGION is no longer used in this file */
@@ -50,6 +50,7 @@
/* Local Prototypes */
/********************/
+/* Setup/teardown routines */
static herr_t H5D__get_offset_copy(const H5D_t *dset, const hsize_t *offset,
hsize_t *offset_copy/*out*/);
static herr_t H5D__ioinfo_init(H5D_t *dset, const H5D_type_info_t *type_info,
@@ -440,9 +441,9 @@ H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space,
/* Note that if this variable is used, the */
/* projected mem space must be discarded at the */
/* end of the function to avoid a memory leak. */
- H5D_storage_t store; /*union of EFL and chunk pointer in file space */
- hssize_t snelmts; /*total number of elmts (signed) */
- hsize_t nelmts; /*total number of elmts */
+ H5D_storage_t store; /* union of EFL and chunk pointer in file space */
+ hssize_t snelmts; /* total number of elmts (signed) */
+ hsize_t nelmts; /* total number of elmts */
hbool_t io_op_init = FALSE; /* Whether the I/O op has been initialized */
char fake_char; /* Temporary variable for NULL buffer pointers */
herr_t ret_value = SUCCEED; /* Return value */
@@ -654,9 +655,9 @@ H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space,
/* Note that if this variable is used, the */
/* projected mem space must be discarded at the */
/* end of the function to avoid a memory leak. */
- H5D_storage_t store; /*union of EFL and chunk pointer in file space */
- hssize_t snelmts; /*total number of elmts (signed) */
- hsize_t nelmts; /*total number of elmts */
+ H5D_storage_t store; /* union of EFL and chunk pointer in file space */
+ hssize_t snelmts; /* total number of elmts (signed) */
+ hsize_t nelmts; /* total number of elmts */
hbool_t io_op_init = FALSE; /* Whether the I/O op has been initialized */
char fake_char; /* Temporary variable for NULL buffer pointers */
herr_t ret_value = SUCCEED; /* Return value */
@@ -971,8 +972,7 @@ H5D__typeinfo_init(const H5D_t *dset, hid_t mem_type_id, hbool_t do_write,
type_info->dst_type_id = mem_type_id;
} /* end else */
- /*
- * Locate the type conversion function and dataspace conversion
+ /* Locate the type conversion function and dataspace conversion
* functions, and set up the element numbering information. If a data
* type conversion is necessary then register datatype atoms. Data type
* conversion is necessary if the user has set the `need_bkg' to a high
@@ -1168,7 +1168,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset,
uint32_t global_no_collective_cause;
hbool_t local_error_message_previously_written = FALSE;
hbool_t global_error_message_previously_written = FALSE;
- size_t index;
+ size_t idx;
size_t cause_strings_len;
char local_no_collective_cause_string[512] = "";
char global_no_collective_cause_string[512] = "";
@@ -1190,8 +1190,8 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset,
/* Append each of the "reason for breaking collective I/O" error messages to the
* local and global no collective cause strings */
- for (cause = 1, index = 0; (cause < H5D_MPIO_NO_COLLECTIVE_MAX_CAUSE) && (index < cause_strings_len); cause <<= 1, index++) {
- size_t cause_strlen = HDstrlen(cause_strings[index]);
+ for (cause = 1, idx = 0; (cause < H5D_MPIO_NO_COLLECTIVE_MAX_CAUSE) && (idx < cause_strings_len); cause <<= 1, idx++) {
+ size_t cause_strlen = HDstrlen(cause_strings[idx]);
if (cause & local_no_collective_cause) {
/* Check if there were any previous error messages included. If so, prepend a semicolon
@@ -1200,7 +1200,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset,
if(local_error_message_previously_written)
HDstrncat(local_no_collective_cause_string, "; ", 2);
- HDstrncat(local_no_collective_cause_string, cause_strings[index], cause_strlen);
+ HDstrncat(local_no_collective_cause_string, cause_strings[idx], cause_strlen);
local_error_message_previously_written = TRUE;
} /* end if */
@@ -1212,7 +1212,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset,
if(global_error_message_previously_written)
HDstrncat(global_no_collective_cause_string, "; ", 2);
- HDstrncat(global_no_collective_cause_string, cause_strings[index], cause_strlen);
+ HDstrncat(global_no_collective_cause_string, cause_strings[idx], cause_strlen);
global_error_message_previously_written = TRUE;
} /* end if */
@@ -1240,7 +1240,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset,
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__ioinfo_adjust() */
-#endif /*H5_HAVE_PARALLEL*/
+#endif /* H5_HAVE_PARALLEL */
/*-------------------------------------------------------------------------
diff --git a/src/H5Dmpio.c b/src/H5Dmpio.c
index 0f1f70d..edb8d99 100644
--- a/src/H5Dmpio.c
+++ b/src/H5Dmpio.c
@@ -82,6 +82,7 @@
/* Macros to represent the regularity of the selection for multiple chunk IO case. */
#define H5D_CHUNK_SELECT_REG 1
+
/******************/
/* Local Typedefs */
/******************/
@@ -2844,30 +2845,30 @@ H5D__chunk_redistribute_shared_chunks(const H5D_io_info_t *io_info, const H5D_ty
size_t mod_data_size;
/* Look up the chunk and get its file and memory dataspaces */
- if (NULL == (chunk_info = (H5D_chunk_info_t *) H5SL_search(fm->sel_chunks, &chunk_entry->index)))
+ if(NULL == (chunk_info = (H5D_chunk_info_t *) H5SL_search(fm->sel_chunks, &chunk_entry->index)))
HGOTO_ERROR(H5E_DATASPACE, H5E_NOTFOUND, FAIL, "can't locate chunk in skip list")
/* Determine size of serialized chunk file dataspace, plus the size of
* the data being written
*/
- if (H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size) < 0)
+ if(H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "unable to get encoded dataspace size")
- if ((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace)) < 0)
+ if((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid")
mod_data_size += (size_t) iter_nelmts * type_info->src_type_size;
- if (NULL == (mod_data[num_send_requests] = (unsigned char *) H5MM_malloc(mod_data_size)))
+ if(NULL == (mod_data[num_send_requests] = (unsigned char *) H5MM_malloc(mod_data_size)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "couldn't allocate chunk modification send buffer")
/* Serialize the chunk's file dataspace into the buffer */
mod_data_p = mod_data[num_send_requests];
- if (H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size) < 0)
+ if(H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "unable to encode dataspace")
/* Initialize iterator for memory selection */
- if (H5S_select_iter_init(mem_iter, chunk_info->mspace, type_info->src_type_size) < 0)
+ if(H5S_select_iter_init(mem_iter, chunk_info->mspace, type_info->src_type_size) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize memory selection information")
mem_iter_init = TRUE;
@@ -2878,11 +2879,11 @@ H5D__chunk_redistribute_shared_chunks(const H5D_io_info_t *io_info, const H5D_ty
/* Send modification data to new owner */
H5_CHECK_OVERFLOW(mod_data_size, size_t, int)
H5_CHECK_OVERFLOW(chunk_entry->index, hsize_t, int)
- if (MPI_SUCCESS != (mpi_code = MPI_Isend(mod_data[num_send_requests], (int) mod_data_size, MPI_BYTE,
+ if(MPI_SUCCESS != (mpi_code = MPI_Isend(mod_data[num_send_requests], (int) mod_data_size, MPI_BYTE,
chunk_entry->owners.new_owner, (int) chunk_entry->index, io_info->comm, &send_requests[num_send_requests])))
HMPI_GOTO_ERROR(FAIL, "MPI_Isend failed", mpi_code)
- if (mem_iter_init && H5S_SELECT_ITER_RELEASE(mem_iter) < 0)
+ if(mem_iter_init && H5S_SELECT_ITER_RELEASE(mem_iter) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "couldn't release memory selection iterator")
mem_iter_init = FALSE;
@@ -3051,11 +3052,11 @@ H5D__mpio_filtered_collective_write_type(H5D_filtered_collective_io_info_t *chun
} /* end if */
done:
- if (write_buf_array)
+ if(write_buf_array)
H5MM_free(write_buf_array);
- if (file_offset_array)
+ if(file_offset_array)
H5MM_free(file_offset_array);
- if (length_array)
+ if(length_array)
H5MM_free(length_array);
FUNC_LEAVE_NOAPI(ret_value)
@@ -3183,53 +3184,53 @@ H5D__filtered_collective_chunk_entry_io(H5D_filtered_collective_io_info_t *chunk
* from the current process, then apply any modifications from other processes. Finally,
* filter the newly-updated chunk.
*/
- switch (io_info->op_type) {
+ switch(io_info->op_type) {
case H5D_IO_OP_READ:
- if (NULL == (file_iter = (H5S_sel_iter_t *) H5MM_malloc(sizeof(H5S_sel_iter_t))))
+ if(NULL == (file_iter = (H5S_sel_iter_t *) H5MM_malloc(sizeof(H5S_sel_iter_t))))
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "couldn't allocate file iterator")
- if (H5S_select_iter_init(file_iter, chunk_info->fspace, type_info->src_type_size) < 0)
+ if(H5S_select_iter_init(file_iter, chunk_info->fspace, type_info->src_type_size) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize memory selection information")
file_iter_init = TRUE;
- if ((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->fspace)) < 0)
+ if((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->fspace)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid")
- if (NULL == (tmp_gath_buf = H5MM_malloc((hsize_t) iter_nelmts * type_info->src_type_size)))
+ if(NULL == (tmp_gath_buf = H5MM_malloc((hsize_t) iter_nelmts * type_info->src_type_size)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "couldn't allocate temporary gather buffer")
- if (!H5D__gather_mem(chunk_entry->buf, chunk_info->fspace, file_iter, (size_t) iter_nelmts, tmp_gath_buf))
+ if(!H5D__gather_mem(chunk_entry->buf, chunk_info->fspace, file_iter, (size_t) iter_nelmts, tmp_gath_buf))
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "couldn't gather from chunk buffer")
- if ((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace)) < 0)
+ if((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid")
- if (H5D__scatter_mem(tmp_gath_buf, chunk_info->mspace, mem_iter, (size_t) iter_nelmts, io_info->u.rbuf) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "couldn't scatter to read buffer")
+ if(H5D__scatter_mem(tmp_gath_buf, chunk_info->mspace, mem_iter, (size_t) iter_nelmts, io_info->u.rbuf) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "couldn't scatter to read buffer")
break;
case H5D_IO_OP_WRITE:
- if ((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace)) < 0)
+ if((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid")
- if (NULL == (tmp_gath_buf = H5MM_malloc((hsize_t) iter_nelmts * type_info->src_type_size)))
+ if(NULL == (tmp_gath_buf = H5MM_malloc((hsize_t) iter_nelmts * type_info->src_type_size)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "couldn't allocate temporary gather buffer")
/* Gather modification data from the application write buffer into a temporary buffer */
if(!H5D__gather_mem(io_info->u.wbuf, chunk_info->mspace, mem_iter, (size_t) iter_nelmts, tmp_gath_buf))
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "couldn't gather from write buffer")
- if (H5S_SELECT_ITER_RELEASE(mem_iter) < 0)
+ if(H5S_SELECT_ITER_RELEASE(mem_iter) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "couldn't release selection iterator")
mem_iter_init = FALSE;
/* Initialize iterator for file selection */
- if (H5S_select_iter_init(mem_iter, chunk_info->fspace, type_info->dst_type_size) < 0)
+ if(H5S_select_iter_init(mem_iter, chunk_info->fspace, type_info->dst_type_size) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize file selection information")
mem_iter_init = TRUE;
- if ((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->fspace)) < 0)
+ if((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->fspace)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid")
/* Scatter the owner's modification data into the chunk data buffer according to
@@ -3238,41 +3239,41 @@ H5D__filtered_collective_chunk_entry_io(H5D_filtered_collective_io_info_t *chunk
if(H5D__scatter_mem(tmp_gath_buf, chunk_info->fspace, mem_iter, (size_t) iter_nelmts, chunk_entry->buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "couldn't scatter to chunk data buffer")
- if (H5S_SELECT_ITER_RELEASE(mem_iter) < 0)
+ if(H5S_SELECT_ITER_RELEASE(mem_iter) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "couldn't release selection iterator")
mem_iter_init = FALSE;
- if (MPI_SUCCESS != (mpi_code = MPI_Waitall(chunk_entry->async_info.num_receive_requests,
+ if(MPI_SUCCESS != (mpi_code = MPI_Waitall(chunk_entry->async_info.num_receive_requests,
chunk_entry->async_info.receive_requests_array, MPI_STATUSES_IGNORE)))
HMPI_GOTO_ERROR(FAIL, "MPI_Waitall failed", mpi_code)
/* For each asynchronous receive call previously posted, receive the chunk modification
* buffer from another rank and update the chunk data
*/
- for (i = 0; i < (size_t) chunk_entry->async_info.num_receive_requests; i++) {
+ for(i = 0; i < (size_t) chunk_entry->async_info.num_receive_requests; i++) {
const unsigned char *mod_data_p;
/* Decode the process' chunk file dataspace */
mod_data_p = chunk_entry->async_info.receive_buffer_array[i];
- if (NULL == (dataspace = H5S_decode(&mod_data_p)))
+ if(NULL == (dataspace = H5S_decode(&mod_data_p)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTDECODE, FAIL, "unable to decode dataspace")
- if (H5S_select_iter_init(mem_iter, dataspace, type_info->dst_type_size) < 0)
+ if(H5S_select_iter_init(mem_iter, dataspace, type_info->dst_type_size) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize memory selection information")
mem_iter_init = TRUE;
- if ((iter_nelmts = H5S_GET_SELECT_NPOINTS(dataspace)) < 0)
+ if((iter_nelmts = H5S_GET_SELECT_NPOINTS(dataspace)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid")
/* Update the chunk data with the received modification data */
if(H5D__scatter_mem(mod_data_p, dataspace, mem_iter, (size_t) iter_nelmts, chunk_entry->buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "couldn't scatter to write buffer")
- if (H5S_SELECT_ITER_RELEASE(mem_iter) < 0)
+ if(H5S_SELECT_ITER_RELEASE(mem_iter) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "couldn't release selection iterator")
mem_iter_init = FALSE;
- if (dataspace) {
- if (H5S_close(dataspace) < 0)
+ if(dataspace) {
+ if(H5S_close(dataspace) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTFREE, FAIL, "can't close dataspace")
dataspace = NULL;
}
diff --git a/src/H5Doh.c b/src/H5Doh.c
index f8ce69f..588123b 100644
--- a/src/H5Doh.c
+++ b/src/H5Doh.c
@@ -189,15 +189,15 @@ H5O__dset_isa(const H5O_t *oh)
/* Datatype */
if((exists = H5O_msg_exists_oh(oh, H5O_DTYPE_ID)) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to read object header")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to read object header")
else if(!exists)
- HGOTO_DONE(FALSE)
+ HGOTO_DONE(FALSE)
/* Layout */
if((exists = H5O_msg_exists_oh(oh, H5O_SDSPACE_ID)) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to read object header")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to read object header")
else if(!exists)
- HGOTO_DONE(FALSE)
+ HGOTO_DONE(FALSE)
done:
FUNC_LEAVE_NOAPI(ret_value)
diff --git a/src/H5Dscatgath.c b/src/H5Dscatgath.c
index 0d88812..0e0edf7 100644
--- a/src/H5Dscatgath.c
+++ b/src/H5Dscatgath.c
@@ -27,6 +27,7 @@
#include "H5Eprivate.h" /* Error handling */
#include "H5FLprivate.h" /* Free Lists */
#include "H5Iprivate.h" /* IDs */
+#include "H5MMprivate.h" /* Memory management */
/****************/
@@ -559,11 +560,9 @@ H5D__scatgath_read(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf
if(H5Z_xform_eval(data_transform, type_info->tconv_buf, smine_nelmts, type_info->mem_type) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "Error performing data transform")
- } /* end if */
+ }
- /*
- * Scatter the data into memory.
- */
+ /* Scatter the data into memory */
if(H5D__scatter_mem(type_info->tconv_buf, mem_space, mem_iter, smine_nelmts, buf/*out*/) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "scatter failed")
} /* end else */
@@ -691,9 +690,9 @@ H5D__scatgath_write(const H5D_io_info_t *io_info, const H5D_type_info_t *type_in
if(H5CX_get_data_transform(&data_transform) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get data transform info")
- if(H5Z_xform_eval(data_transform, type_info->tconv_buf, smine_nelmts, type_info->mem_type) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "Error performing data transform")
- } /* end if */
+ if(H5Z_xform_eval(data_transform, type_info->tconv_buf, smine_nelmts, type_info->mem_type) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "Error performing data transform")
+ }
/*
* Perform datatype conversion.
diff --git a/src/H5Dselect.c b/src/H5Dselect.c
index 0ec3423..8b84c3e 100644
--- a/src/H5Dselect.c
+++ b/src/H5Dselect.c
@@ -11,7 +11,7 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-/* Programmer: Quincey Koziol <koziol@ncsa.uiuc.ued>
+/* Programmer: Quincey Koziol
* Thursday, September 30, 2004
*
* Purpose: Dataspace I/O functions.
@@ -227,6 +227,8 @@ H5D__select_io(const H5D_io_info_t *io_info, size_t elmt_size,
/* Decrement number of elements left to process */
HDassert(((size_t)tmp_file_len % elmt_size) == 0);
+ if(elmt_size == 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "Resulted in division by zero")
nelmts -= ((size_t)tmp_file_len / elmt_size);
} /* end while */
} /* end else */
diff --git a/src/H5EAdbg.c b/src/H5EAdbg.c
index 46e87c5..4e033dc 100644
--- a/src/H5EAdbg.c
+++ b/src/H5EAdbg.c
@@ -13,9 +13,9 @@
/*-------------------------------------------------------------------------
*
- * Created: H5EAdbg.c
- * Sep 11 2008
- * Quincey Koziol <koziol@hdfgroup.org>
+ * Created: H5EAdbg.c
+ * Sep 11 2008
+ * Quincey Koziol
*
* Purpose: Dump debugging information about an extensible array.
*
@@ -37,9 +37,9 @@
/***********/
/* Headers */
/***********/
-#include "H5private.h" /* Generic Functions */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5EApkg.h" /* Extensible Arrays */
+#include "H5private.h" /* Generic Functions */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5EApkg.h" /* Extensible Arrays */
/****************/
@@ -77,17 +77,16 @@
/*******************/
-
+
/*-------------------------------------------------------------------------
* Function: H5EA__hdr_debug
*
- * Purpose: Prints debugging info about a extensible array header.
+ * Purpose: Prints debugging info about a extensible array header.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
- * koziol@hdfgroup.org
- * Sep 11 2008
+ * Programmer: Quincey Koziol
+ * Sep 11 2008
*
*-------------------------------------------------------------------------
*/
@@ -117,7 +116,7 @@ H5EA__hdr_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent,
/* Load the extensible array header */
if(NULL == (hdr = H5EA__hdr_protect(f, addr, dbg_ctx, H5AC__READ_ONLY_FLAG)))
- H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header")
+ H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header")
/* Print opening message */
HDfprintf(stream, "%*sExtensible Array Header...\n", indent, "");
@@ -169,11 +168,11 @@ CATCH
if(dbg_ctx && cls->dst_dbg_ctx(dbg_ctx) < 0)
H5E_THROW(H5E_CANTRELEASE, "unable to release extensible array debugging context")
if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0)
- H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header")
+ H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header")
END_FUNC(PKG) /* end H5EA__hdr_debug() */
-
+
/*-------------------------------------------------------------------------
* Function: H5EA__iblock_debug
*
@@ -384,21 +383,20 @@ CATCH
if(sblock && H5EA__sblock_unprotect(sblock, H5AC__NO_FLAGS_SET) < 0)
H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array super block")
if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0)
- H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header")
+ H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header")
END_FUNC(PKG) /* end H5EA__sblock_debug() */
-
+
/*-------------------------------------------------------------------------
* Function: H5EA__dblock_debug
*
- * Purpose: Prints debugging info about a extensible array data block.
+ * Purpose: Prints debugging info about a extensible array data block.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
- * koziol@hdfgroup.org
- * Sep 22 2008
+ * Programmer: Quincey Koziol
+ * Sep 22 2008
*
*-------------------------------------------------------------------------
*/
@@ -432,7 +430,7 @@ H5EA__dblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent,
/* Load the extensible array header */
if(NULL == (hdr = H5EA__hdr_protect(f, hdr_addr, dbg_ctx, H5AC__READ_ONLY_FLAG)))
- H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header")
+ H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header")
/* Protect data block */
/* (Note: setting parent of data block to 'hdr' for this operation should be OK -QAK) */
@@ -466,7 +464,7 @@ CATCH
if(dblock && H5EA__dblock_unprotect(dblock, H5AC__NO_FLAGS_SET) < 0)
H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array data block")
if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0)
- H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header")
+ H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header")
END_FUNC(PKG) /* end H5EA__dblock_debug() */
generated by cgit v0.12 at 2024-12-04 03:32:10 (GMT)