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authorvchoi-hdfgroup <55293060+vchoi-hdfgroup@users.noreply.github.com>2022-12-12 16:40:30 (GMT)
committerGitHub <noreply@github.com>2022-12-12 16:40:30 (GMT)
commit8ef713ae5dc454db66ea821635f6d6d6970858f0 (patch)
tree44ea73967efdafa0cc1296af0ed5acdaa4d78312 /src
parent1dae8c805c61039b7f0c53021d0b828026077eba (diff)
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Fix for HDFFV-10840: Instead of using fill->buf for datatype conversiā€¦ (#2277)
* Fix for HDFFV-10840: Instead of using fill->buf for datatype conversion (#2153) * Fix for HDFFV-10840: Instead of using fill->buf for datatype conversion if it is large enough, a buffer is allocated regardless so that the element in fill->buf can later be reclaimed. Valgrind is run on test/set_extent.c and there is no memory leak. * Add information of this fix to release notes. * Change macos version for CI to macos-11 until accum test failure is fixed for macos 12. Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
Diffstat (limited to 'src')
-rw-r--r--src/H5Ofill.c25
1 files changed, 11 insertions, 14 deletions
diff --git a/src/H5Ofill.c b/src/H5Ofill.c
index 4106056..2197c09 100644
--- a/src/H5Ofill.c
+++ b/src/H5Ofill.c
@@ -1006,6 +1006,8 @@ H5O_fill_convert(H5O_fill_t *fill, H5T_t *dset_type, hbool_t *fill_changed)
/* Don't bother doing anything if there will be no actual conversion */
if (!H5T_path_noop(tpath)) {
+ size_t fill_type_size;
+
if ((src_id = H5I_register(H5I_DATATYPE, H5T_copy(fill->type, H5T_COPY_ALL), FALSE)) < 0 ||
(dst_id = H5I_register(H5I_DATATYPE, H5T_copy(dset_type, H5T_COPY_ALL), FALSE)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to copy/register data type")
@@ -1014,13 +1016,11 @@ H5O_fill_convert(H5O_fill_t *fill, H5T_t *dset_type, hbool_t *fill_changed)
* Datatype conversions are always done in place, so we need a buffer
* that is large enough for both source and destination.
*/
- if (H5T_get_size(fill->type) >= H5T_get_size(dset_type))
- buf = fill->buf;
- else {
- if (NULL == (buf = H5MM_malloc(H5T_get_size(dset_type))))
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for type conversion")
- H5MM_memcpy(buf, fill->buf, H5T_get_size(fill->type));
- } /* end else */
+ fill_type_size = H5T_get_size(fill->type);
+
+ if (NULL == (buf = H5MM_malloc(MAX(fill_type_size, H5T_get_size(dset_type)))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for type conversion")
+ H5MM_memcpy(buf, fill->buf, fill_type_size);
/* Use CALLOC here to clear the buffer in case later the library thinks there's
* data in the background. */
@@ -1032,11 +1032,10 @@ H5O_fill_convert(H5O_fill_t *fill, H5T_t *dset_type, hbool_t *fill_changed)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "datatype conversion failed")
/* Update the fill message */
- if (buf != fill->buf) {
- H5T_vlen_reclaim_elmt(fill->buf, fill->type);
- H5MM_xfree(fill->buf);
- fill->buf = buf;
- } /* end if */
+ H5T_vlen_reclaim_elmt(fill->buf, fill->type);
+ H5MM_xfree(fill->buf);
+ fill->buf = buf;
+
(void)H5T_close_real(fill->type);
fill->type = NULL;
H5_CHECKED_ASSIGN(fill->size, ssize_t, H5T_get_size(dset_type), size_t);
@@ -1050,8 +1049,6 @@ done:
HDONE_ERROR(H5E_OHDR, H5E_CANTDEC, FAIL, "unable to decrement ref count for temp ID")
if (dst_id >= 0 && H5I_dec_ref(dst_id) < 0)
HDONE_ERROR(H5E_OHDR, H5E_CANTDEC, FAIL, "unable to decrement ref count for temp ID")
- if (buf != fill->buf)
- H5MM_xfree(buf);
if (bkg)
H5MM_xfree(bkg);