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authorJordan Henderson <jhenderson@hdfgroup.org>2017-01-13 20:21:59 (GMT)
committerJordan Henderson <jhenderson@hdfgroup.org>2017-01-13 20:21:59 (GMT)
commit2292a8520df0738826e22e2e097495761f3e5d28 (patch)
tree662ccea10b8ffaf8a66e0f6f23d7fddfdedc0786 /src
parenta3605cbdeb5f79c5753b848dfef1706988ba10e7 (diff)
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Eliminate owner field
Work on redistributing shared chunks
Diffstat (limited to 'src')
-rw-r--r--src/H5Dmpio.c26
1 files changed, 11 insertions, 15 deletions
diff --git a/src/H5Dmpio.c b/src/H5Dmpio.c
index cfcc5c4..6ae4ef8 100644
--- a/src/H5Dmpio.c
+++ b/src/H5Dmpio.c
@@ -106,7 +106,6 @@ typedef struct H5D_filtered_collective_io_info_t {
H5F_block_t old_chunk;
H5F_block_t new_chunk;
int num_writers;
- int owner;
void *buf;
} H5D_filtered_collective_io_info_t;
@@ -413,7 +412,6 @@ H5D__mpio_array_gather(H5D_io_info_t *io_info, void *local_array,
HDfprintf(debug_file, "| Chunk Entry %zd:\n", j);
HDfprintf(debug_file, "| - Chunk Address: %a\n", ((H5D_filtered_collective_io_info_t *) gathered_array)[j].old_chunk.offset);
HDfprintf(debug_file, "| - Chunk Length: %zd\n", ((H5D_filtered_collective_io_info_t *) gathered_array)[j].old_chunk.length);
- HDfprintf(debug_file, "| - Chunk Owner: %d\n", ((H5D_filtered_collective_io_info_t *) gathered_array)[j].owner);
HDfprintf(debug_file, "| - Address of mspace: %x\n", ((H5D_filtered_collective_io_info_t *) gathered_array)[j].chunk_info.mspace);
}
HDfprintf(debug_file, "------------------------------\n\n");
@@ -2985,7 +2983,6 @@ H5D__construct_filtered_io_info_list(const H5D_io_info_t *io_info, const H5D_typ
H5D_filtered_collective_io_info_t *local_info_array = NULL;
H5SL_node_t *chunk_node;
hbool_t no_overlap = FALSE;
- size_t i;
size_t num_chunks_selected;
size_t *num_chunks_selected_array = NULL;
int mpi_rank, mpi_size, mpi_code;
@@ -3006,17 +3003,17 @@ H5D__construct_filtered_io_info_list(const H5D_io_info_t *io_info, const H5D_typ
/* Get the no overlap property */
- num_chunks_selected = H5SL_count(fm->sel_chunks);
-
+ /* Redistribute chunks to new owners as necessary */
if (!no_overlap) {
- /* Redistribute chunks so that no more than 1 process is writing to a given chunk */
+
}
- if (NULL == (local_info_array = (H5D_filtered_collective_io_info_t *) H5MM_malloc(num_chunks_selected * sizeof(*local_info_array))))
+ if (NULL == (local_info_array = (H5D_filtered_collective_io_info_t *) H5MM_malloc(H5SL_count(fm->sel_chunks) * sizeof(*local_info_array))))
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "couldn't allocate local io info array buffer")
+ num_chunks_selected = 0;
chunk_node = H5SL_first(fm->sel_chunks);
- for (i = 0; chunk_node; i++) {
+ while (chunk_node) {
H5D_chunk_info_t *chunk_info = (H5D_chunk_info_t *) H5SL_item(chunk_node);
H5D_chunk_ud_t udata;
@@ -3025,16 +3022,16 @@ H5D__construct_filtered_io_info_list(const H5D_io_info_t *io_info, const H5D_typ
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "error looking up chunk address")
#ifdef PARALLEL_COMPRESS_DEBUG
- local_info_array[i].owner = mpi_rank;
- local_info_array[i].num_writers = 0;
+ local_info_array[num_chunks_selected].num_writers = 0;
#endif
- local_info_array[i].old_chunk = local_info_array[i].new_chunk = udata.chunk_block;
- local_info_array[i].chunk_info = *chunk_info;
- local_info_array[i].buf = NULL;
+ local_info_array[num_chunks_selected].old_chunk = local_info_array[num_chunks_selected].new_chunk = udata.chunk_block;
+ local_info_array[num_chunks_selected].chunk_info = *chunk_info;
+ local_info_array[num_chunks_selected].buf = NULL;
+ num_chunks_selected++;
chunk_node = H5SL_next(chunk_node);
- } /* end for */
+ } /* end while */
#ifdef PARALLEL_COMPRESS_DEBUG
HDfprintf(debug_file, " Contents of local info array\n");
@@ -3043,7 +3040,6 @@ H5D__construct_filtered_io_info_list(const H5D_io_info_t *io_info, const H5D_typ
HDfprintf(debug_file, "| Chunk Entry %zd:\n", j);
HDfprintf(debug_file, "| - Chunk Address: %a\n", local_info_array[j].old_chunk.offset);
HDfprintf(debug_file, "| - Chunk Length: %zd\n", local_info_array[j].old_chunk.length);
- HDfprintf(debug_file, "| - Chunk Owner: %d\n", local_info_array[j].owner);
HDfprintf(debug_file, "| - Address of mspace: %x\n", local_info_array[j].chunk_info.mspace);
HDfprintf(debug_file, "| - Chunk Selection Type: %d\n", H5S_GET_SELECT_TYPE(local_info_array[j].chunk_info.mspace));
HDfprintf(debug_file, "| - Chunk Num Elmts Sel.: %zd\n", H5S_GET_SELECT_NPOINTS(local_info_array[j].chunk_info.mspace));