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author | Allen Byrne <byrn@hdfgroup.org> | 2017-12-13 17:05:29 (GMT) |
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committer | Allen Byrne <byrn@hdfgroup.org> | 2017-12-13 17:05:29 (GMT) |
commit | 405ac7c6e5e8a251a1daa64e29d48a37fe66c42a (patch) | |
tree | db4e4ac884f334ba4c5339b3c17c7604b91d2ecd /src | |
parent | f09bfdb490ee31a29cb14f3692b66b8396d9ed80 (diff) | |
parent | 23003990cc034b3ace8c1452aaa1fb1cadbddf51 (diff) | |
download | hdf5-405ac7c6e5e8a251a1daa64e29d48a37fe66c42a.zip hdf5-405ac7c6e5e8a251a1daa64e29d48a37fe66c42a.tar.gz hdf5-405ac7c6e5e8a251a1daa64e29d48a37fe66c42a.tar.bz2 |
Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '23003990cc034b3ace8c1452aaa1fb1cadbddf51': (49 commits)
Snapshot version 1.10 release 2 (snap4)
Fix for daily test failures.
HDFFV-10223 Shared libraries fail test on OSX with fortran enabled with cmake
removed duplicate exports of DS subroutines
removed duplicate exports of DS subroutines
Normalization with VOL integration branch.
clean-up
moved dll export to Module
Resolve conflicts from previous merge.
Fixed typo.
removed parameters
added missing parameter
added missing parameter
removed duplicate exports of DS subroutines
removed fortran comments
Various code cleanup Description: - Replaced H5Location::exists with H5Location::nameExists and marked H5Location::exists as deprecated. - Miscellaneous test cleanup for consistency. Platforms tested: Linux/32 2.6 (jam) Linux/64 (jelly) Darwin (osx1010test)
exported global variables for windows
Updated RELEASE.txt to include note on bug fix for HDFFV-10272, LBNL-ECP(10334)
Fixed an incorrect FUNC_ENTER macro.
Normalization with VOL integration branch.
...
Diffstat (limited to 'src')
-rw-r--r-- | src/H5.c | 88 | ||||
-rw-r--r-- | src/H5A.c | 66 | ||||
-rw-r--r-- | src/H5Aint.c | 85 | ||||
-rw-r--r-- | src/H5Aprivate.h | 4 | ||||
-rw-r--r-- | src/H5Dchunk.c | 4 | ||||
-rw-r--r-- | src/H5Dint.c | 2 | ||||
-rw-r--r-- | src/H5Dio.c | 15 | ||||
-rw-r--r-- | src/H5Dmpio.c | 8 | ||||
-rw-r--r-- | src/H5Dpkg.h | 2 | ||||
-rw-r--r-- | src/H5F.c | 167 | ||||
-rw-r--r-- | src/H5FD.c | 18 | ||||
-rw-r--r-- | src/H5Ffake.c | 21 | ||||
-rw-r--r-- | src/H5Fint.c | 68 | ||||
-rw-r--r-- | src/H5Fmount.c | 7 | ||||
-rw-r--r-- | src/H5Fpkg.h | 25 | ||||
-rw-r--r-- | src/H5Fprivate.h | 24 | ||||
-rw-r--r-- | src/H5Fquery.c | 55 | ||||
-rw-r--r-- | src/H5Gdeprec.c | 61 | ||||
-rw-r--r-- | src/H5I.c | 725 | ||||
-rw-r--r-- | src/H5L.c | 116 | ||||
-rw-r--r-- | src/H5Lprivate.h | 49 | ||||
-rw-r--r-- | src/H5Oflush.c | 2 | ||||
-rw-r--r-- | src/H5Olayout.c | 14 | ||||
-rw-r--r-- | src/H5Opkg.h | 18 | ||||
-rw-r--r-- | src/H5Oprivate.h | 5 | ||||
-rw-r--r-- | src/H5P.c | 25 | ||||
-rw-r--r-- | src/H5Pdapl.c | 8 | ||||
-rw-r--r-- | src/H5Pdcpl.c | 21 | ||||
-rw-r--r-- | src/H5Pdxpl.c | 28 | ||||
-rw-r--r-- | src/H5Pencdec.c | 28 | ||||
-rw-r--r-- | src/H5Pfapl.c | 50 | ||||
-rw-r--r-- | src/H5Pfcpl.c | 16 | ||||
-rw-r--r-- | src/H5Pgcpl.c | 8 | ||||
-rw-r--r-- | src/H5Plapl.c | 17 | ||||
-rw-r--r-- | src/H5Pocpl.c | 4 | ||||
-rw-r--r-- | src/H5Ppkg.h | 16 | ||||
-rw-r--r-- | src/H5Pprivate.h | 22 | ||||
-rw-r--r-- | src/H5Ppublic.h | 2 | ||||
-rw-r--r-- | src/H5Pstrcpl.c | 4 | ||||
-rw-r--r-- | src/H5R.c | 1 | ||||
-rw-r--r-- | src/H5Rint.c | 4 | ||||
-rw-r--r-- | src/H5S.c | 14 | ||||
-rw-r--r-- | src/H5Sall.c | 24 | ||||
-rw-r--r-- | src/H5Shyper.c | 327 | ||||
-rw-r--r-- | src/H5Snone.c | 24 | ||||
-rw-r--r-- | src/H5Spkg.h | 30 | ||||
-rw-r--r-- | src/H5Spoint.c | 197 | ||||
-rw-r--r-- | src/H5Sprivate.h | 18 | ||||
-rw-r--r-- | src/H5Sselect.c | 13 | ||||
-rw-r--r-- | src/H5T.c | 4 | ||||
-rw-r--r-- | src/H5Tbit.c | 395 | ||||
-rw-r--r-- | src/H5Tcommit.c | 17 | ||||
-rw-r--r-- | src/H5Tconv.c | 90 | ||||
-rw-r--r-- | src/H5Tprivate.h | 6 | ||||
-rw-r--r-- | src/H5private.h | 181 | ||||
-rw-r--r-- | src/H5public.h | 5 | ||||
-rw-r--r-- | src/H5trace.c | 30 | ||||
-rw-r--r-- | src/hdf5.h | 52 |
58 files changed, 1784 insertions, 1546 deletions
@@ -19,17 +19,18 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5ACprivate.h" /* Metadata cache */ -#include "H5Dprivate.h" /* Datasets */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FLprivate.h" /* Free lists */ -#include "H5Lprivate.h" /* Links */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5Pprivate.h" /* Property lists */ -#include "H5SLprivate.h" /* Skip lists */ -#include "H5Tprivate.h" /* Datatypes */ -#include "H5FSprivate.h" /* File free space */ +#include "H5private.h" /* Generic Functions */ +#include "H5ACprivate.h" /* Metadata cache */ +#include "H5Dprivate.h" /* Datasets */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FLprivate.h" /* Free lists */ +#include "H5FSprivate.h" /* File free space */ +#include "H5Lprivate.h" /* Links */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5Pprivate.h" /* Property lists */ +#include "H5SLprivate.h" /* Skip lists */ +#include "H5Tprivate.h" /* Datatypes */ +#include "H5FSprivate.h" /* File free space */ /****************/ /* Local Macros */ @@ -80,9 +81,9 @@ hbool_t H5_libterm_g = FALSE; /* Library isn't being shutdown */ hbool_t H5_MPEinit_g = FALSE; /* MPE Library hasn't been initialized */ #endif -char H5_lib_vers_info_g[] = H5_VERS_INFO; +char H5_lib_vers_info_g[] = H5_VERS_INFO; static hbool_t H5_dont_atexit_g = FALSE; -H5_debug_t H5_debug_g; /*debugging info */ +H5_debug_t H5_debug_g; /* debugging info */ /*******************/ @@ -243,11 +244,6 @@ done: * * Return: void * - * Programmer: Robb Matzke - * Friday, November 20, 1998 - * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -281,11 +277,11 @@ H5_term_library(void) */ #define DOWN(F) \ (((n = H5##F##_term_package()) && (at + 8) < sizeof loop)? \ - (sprintf(loop + at, "%s%s", (at ? "," : ""), #F), \ + (HDsprintf(loop + at, "%s%s", (at ? "," : ""), #F), \ at += HDstrlen(loop + at), \ n): \ ((n > 0 && (at + 5) < sizeof loop) ? \ - (sprintf(loop + at, "..."), \ + (HDsprintf(loop + at, "..."), \ at += HDstrlen(loop + at), \ n) : n)) @@ -364,8 +360,8 @@ H5_term_library(void) if(pending) { /* Only display the error message if the user is interested in them. */ if(func) { - fprintf(stderr, "HDF5: infinite loop closing library\n"); - fprintf(stderr, " %s\n", loop); + HDfprintf(stderr, "HDF5: infinite loop closing library\n"); + HDfprintf(stderr, " %s\n", loop); #ifndef NDEBUG HDabort(); #endif /* NDEBUG */ @@ -440,11 +436,6 @@ done: * Failure: negative if this function is called more than * once or if it is called too late. * - * Programmer: Robb Matzke - * Friday, November 20, 1998 - * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t @@ -479,11 +470,6 @@ H5dont_atexit(void) * * Failure: negative * - * Programmer: Quincey Koziol - * Saturday, March 11, 2000 - * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t @@ -528,13 +514,6 @@ done: * * Failure: negative * - * Programmer: Quincey Koziol - * Wednesday, August 2, 2000 - * - * Modifications: Neil Fortner - * Wednesday, April 8, 2009 - * Added support for factory free lists - * *------------------------------------------------------------------------- */ herr_t @@ -578,9 +557,6 @@ done: * * Return: void * - * Programmer: Robb Matzke - * Wednesday, August 19, 1998 - * *------------------------------------------------------------------------- */ static void @@ -632,7 +608,7 @@ H5_debug_mask(const char *s) } /* end if */ } /* end for */ if (i>=(size_t)H5_NPKGS) - fprintf(stderr, "HDF5_DEBUG: ignored %s\n", pkg_name); + HDfprintf(stderr, "HDF5_DEBUG: ignored %s\n", pkg_name); } /* end if-else */ } else if (HDisdigit(*s)) { @@ -672,8 +648,6 @@ H5_debug_mask(const char *s) * * Return: MPI_SUCCESS * - * Programmer: Mohamad Chaarawi, February 2015 - * *------------------------------------------------------------------------- */ static int H5_mpi_delete_cb(MPI_Comm H5_ATTR_UNUSED comm, int H5_ATTR_UNUSED keyval, void H5_ATTR_UNUSED *attr_val, int H5_ATTR_UNUSED *flag) @@ -698,13 +672,6 @@ static int H5_mpi_delete_cb(MPI_Comm H5_ATTR_UNUSED comm, int H5_ATTR_UNUSED key * * Return: Non-negative on success/Negative on failure * - * Programmer: Unknown - * - * Modifications: - * Robb Matzke, 4 Mar 1998 - * Now use "normal" data types for the interface. Any of the arguments - * may be null pointers - * *------------------------------------------------------------------------- */ herr_t @@ -738,13 +705,6 @@ done: * * Failure: abort() * - * Programmer: Robb Matzke - * Tuesday, April 21, 1998 - * - * Modifications: - * Albert Cheng, May 12, 2001 - * Added verification of H5_VERS_INFO. - * *------------------------------------------------------------------------- */ #define VERSION_MISMATCH_WARNING \ @@ -869,11 +829,6 @@ done: * * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 - * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t @@ -896,11 +851,6 @@ done: * * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke - * Friday, January 30, 1998 - * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t @@ -717,8 +717,7 @@ hid_t H5Aget_space(hid_t attr_id) { H5A_t *attr; /* Attribute object for ID */ - H5S_t *ds = NULL; - hid_t ret_value; + hid_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE1("i", "i", attr_id); @@ -727,19 +726,9 @@ H5Aget_space(hid_t attr_id) if(NULL == (attr = (H5A_t *)H5I_object_verify(attr_id, H5I_ATTR))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not an attribute") - if(NULL == (ds = H5A_get_space(attr))) + if((ret_value = H5A_get_space(attr)) < 0) HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get space ID of attribute") - - /* Atomize */ - if((ret_value = H5I_register(H5I_DATASPACE, ds, TRUE)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register dataspace atom") - done: - if(ret_value < 0) { - if(ds && (H5S_close(ds) < 0)) - HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release dataspace") - } /* end if */ - FUNC_LEAVE_API(ret_value) } /* H5Aget_space() */ @@ -764,7 +753,6 @@ hid_t H5Aget_type(hid_t attr_id) { H5A_t *attr; /* Attribute object for ID */ - H5T_t *dt = NULL; hid_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) @@ -774,19 +762,9 @@ H5Aget_type(hid_t attr_id) if(NULL == (attr = (H5A_t *)H5I_object_verify(attr_id, H5I_ATTR))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not an attribute") - if(NULL == (dt = H5A_get_type(attr))) - HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get space ID of attribute") - - /* Create an atom */ - if((ret_value = H5I_register(H5I_DATATYPE, dt, TRUE)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register datatype") - + if((ret_value = H5A_get_type(attr)) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get datatype ID of attribute") done: - if(ret_value < 0) { - if(dt && (H5T_close(dt) < 0)) - HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release datatype") - } /* end if */ - FUNC_LEAVE_API(ret_value) } /* H5Aget_type() */ @@ -1172,7 +1150,7 @@ H5Arename(hid_t loc_id, const char *old_name, const char *new_name) if(HDstrcmp(old_name, new_name)) { H5G_loc_t loc; /* Object location */ - if(H5G_loc(loc_id, & loc) < 0) + if(H5G_loc(loc_id, &loc) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") /* Call private attribute rename routine */ @@ -1227,7 +1205,7 @@ H5Arename_by_name(hid_t loc_id, const char *obj_name, const char *old_attr_name, if(H5P_verify_apl_and_dxpl(&lapl_id, H5P_CLS_LACC, &dxpl_id, loc_id, TRUE) < 0) HGOTO_ERROR(H5E_ATTR, H5E_CANTSET, FAIL, "can't set access and transfer property lists") - if(H5G_loc(loc_id, & loc) < 0) + if(H5G_loc(loc_id, &loc) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") /* Call private attribute rename routine */ @@ -1685,12 +1663,12 @@ H5Aexists(hid_t obj_id, const char *attr_name) H5TRACE2("t", "i*s", obj_id, attr_name); /* check arguments */ - if(H5I_ATTR == H5I_get_type(obj_id)) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "location is not valid for an attribute") - if(H5G_loc(obj_id, &loc) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") - if(!attr_name || !*attr_name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no attribute name") + if (H5I_ATTR == H5I_get_type(obj_id)) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "location is not valid for an attribute") + if (H5G_loc(obj_id, &loc) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + if (!attr_name || !*attr_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no attribute name") /* Check if the attribute exists */ if((ret_value = H5O_attr_exists(loc.oloc, attr_name, H5AC_ind_read_dxpl_id)) < 0) @@ -1726,20 +1704,20 @@ H5Aexists_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, H5TRACE4("t", "i*s*si", loc_id, obj_name, attr_name, lapl_id); /* check arguments */ - if(H5I_ATTR == H5I_get_type(loc_id)) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "location is not valid for an attribute") - if(H5G_loc(loc_id, &loc) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") - if(!obj_name || !*obj_name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no object name") - if(!attr_name || !*attr_name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no attribute name") + if (H5I_ATTR == H5I_get_type(loc_id)) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "location is not valid for an attribute") + if (H5G_loc(loc_id, &loc) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + if (!obj_name || !*obj_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no object name") + if (!attr_name || !*attr_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no attribute name") /* Verify access property list and get correct dxpl */ - if(H5P_verify_apl_and_dxpl(&lapl_id, H5P_CLS_LACC, &dxpl_id, loc_id, FALSE) < 0) + if (H5P_verify_apl_and_dxpl(&lapl_id, H5P_CLS_LACC, &dxpl_id, loc_id, FALSE) < 0) HGOTO_ERROR(H5E_ATTR, H5E_CANTSET, FAIL, "can't set access and transfer property lists") - if((ret_value = H5A_exists_by_name(loc, obj_name, attr_name, lapl_id, dxpl_id)) < 0) + if ((ret_value = H5A_exists_by_name(loc, obj_name, attr_name, lapl_id, dxpl_id)) < 0) HGOTO_ERROR(H5E_ATTR, H5E_CANTGET, FAIL, "unable to determine if attribute exists") done: diff --git a/src/H5Aint.c b/src/H5Aint.c index 160c7fb..f1dd41e 100644 --- a/src/H5Aint.c +++ b/src/H5Aint.c @@ -33,14 +33,14 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Apkg.h" /* Attributes */ -#include "H5Dprivate.h" /* Datasets */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Iprivate.h" /* IDs */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5Opkg.h" /* Object headers */ -#include "H5SMprivate.h" /* Shared Object Header Messages */ +#include "H5private.h" /* Generic Functions */ +#include "H5Apkg.h" /* Attributes */ +#include "H5Dprivate.h" /* Datasets */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Iprivate.h" /* IDs */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5Opkg.h" /* Object headers */ +#include "H5SMprivate.h" /* Shared Object Header Messages */ /****************/ @@ -735,86 +735,89 @@ H5A__get_name(H5A_t *attr, size_t buf_size, char *buf) /*------------------------------------------------------------------------- - * Function: H5A_get_space + * Function: H5A_get_space * - * Purpose: Returns dataspace of the attribute. + * Purpose: Returns dataspace of the attribute. * - * Return: Success: dataspace + * Return: Success: A valid ID for the dataspace of an attribute * - * Failure: NULL - * - * Programmer: Mohamad Chaarawi - * March, 2012 + * Failure: H5I_INVALID_ID * *------------------------------------------------------------------------- */ -H5S_t * +hid_t H5A_get_space(H5A_t *attr) { - H5S_t *ret_value = NULL; + H5S_t *ds = NULL; + hid_t ret_value = H5I_INVALID_HID; FUNC_ENTER_NOAPI_NOINIT HDassert(attr); /* Copy the attribute's dataspace */ - if(NULL == (ret_value = H5S_copy(attr->shared->ds, FALSE, TRUE))) - HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, NULL, "unable to copy dataspace") + if (NULL == (ds = H5S_copy(attr->shared->ds, FALSE, TRUE))) + HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, H5I_INVALID_HID, "unable to copy dataspace") + + /* Atomize */ + if ((ret_value = H5I_register(H5I_DATASPACE, ds, TRUE)) < 0) + HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register dataspace atom") done: + if (H5I_INVALID_HID == ret_value && ds && H5S_close(ds) < 0) + HDONE_ERROR(H5E_ATTR, H5E_CLOSEERROR, H5I_INVALID_HID, "unable to release dataspace") + FUNC_LEAVE_NOAPI(ret_value) } /* end H5A_get_space() */ /*------------------------------------------------------------------------- - * Function: H5A_get_type + * Function: H5A_get_type * - * Purpose: Returns datatype of the dataset. + * Purpose: Returns an ID for the datatype of an attribute * - * Return: Success: datatype + * Return: Success: A valid ID for the datatype of an attribute * - * Failure: NULL - * - * Programmer: Mohamad Chaarawi - * March, 2012 + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ -H5T_t * +hid_t H5A_get_type(H5A_t *attr) { H5T_t *dt = NULL; - H5T_t *ret_value = NULL; + hid_t ret_value = H5I_INVALID_HID; FUNC_ENTER_NOAPI_NOINIT HDassert(attr); /* Patch the datatype's "top level" file pointer */ - if(H5T_patch_file(attr->shared->dt, attr->oloc.file) < 0) - HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, NULL, "unable to patch datatype's file pointer") + if (H5T_patch_file(attr->shared->dt, attr->oloc.file) < 0) + HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, H5I_INVALID_HID, "unable to patch datatype's file pointer") - /* - * Copy the attribute's datatype. If the type is a named type then + /* Copy the attribute's datatype. If the type is a named type then * reopen the type before returning it to the user. Make the type * read-only. */ - if(NULL == (dt = H5T_copy(attr->shared->dt, H5T_COPY_REOPEN))) - HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, NULL, "unable to copy datatype") + if (NULL == (dt = H5T_copy(attr->shared->dt, H5T_COPY_REOPEN))) + HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, H5I_INVALID_HID, "unable to copy datatype") /* Mark any datatypes as being in memory now */ - if(H5T_set_loc(dt, NULL, H5T_LOC_MEMORY) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, NULL, "invalid datatype location") + if (H5T_set_loc(dt, NULL, H5T_LOC_MEMORY) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, H5I_INVALID_HID, "invalid datatype location") /* Lock copied type */ - if(H5T_lock(dt, FALSE) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, NULL, "unable to lock transient datatype") + if (H5T_lock(dt, FALSE) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, H5I_INVALID_HID, "unable to lock transient datatype") - ret_value = dt; + /* Atomize */ + if ((ret_value = H5I_register(H5I_DATATYPE, dt, TRUE)) < 0) + HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register datatype") done: - if(!ret_value && dt && (H5T_close(dt) < 0)) - HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, NULL, "unable to release datatype") + if (H5I_INVALID_HID == ret_value && dt && (H5T_close(dt) < 0)) + HDONE_ERROR(H5E_ATTR, H5E_CLOSEERROR, H5I_INVALID_HID, "unable to release datatype") FUNC_LEAVE_NOAPI(ret_value) } /* end H5A_get_type() */ diff --git a/src/H5Aprivate.h b/src/H5Aprivate.h index b285920..9826859 100644 --- a/src/H5Aprivate.h +++ b/src/H5Aprivate.h @@ -76,8 +76,8 @@ typedef struct H5A_attr_iter_op_t { H5_DLL struct H5O_loc_t *H5A_oloc(H5A_t *attr); H5_DLL H5G_name_t *H5A_nameof(H5A_t *attr); H5_DLL H5T_t *H5A_type(const H5A_t *attr); -H5_DLL H5T_t *H5A_get_type(H5A_t *attr); -H5_DLL H5S_t *H5A_get_space(H5A_t *attr); +H5_DLL hid_t H5A_get_type(H5A_t *attr); +H5_DLL hid_t H5A_get_space(H5A_t *attr); H5_DLL herr_t H5O_attr_iterate_real(hid_t loc_id, const H5O_loc_t *loc, hid_t dxpl_id, H5_index_t idx_type, H5_iter_order_t order, hsize_t skip, hsize_t *last_attr, const H5A_attr_iter_op_t *attr_op, void *op_data); diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c index be3b678..f96abdd 100644 --- a/src/H5Dchunk.c +++ b/src/H5Dchunk.c @@ -2008,7 +2008,7 @@ H5D__chunk_file_cb(void H5_ATTR_UNUSED *elem, const H5T_t H5_ATTR_UNUSED *type, coords_in_chunk[u] = coords[u] - (scaled[u] * fm->layout->u.chunk.dim[u]); /* Add point to file selection for chunk */ - if(H5S_select_elements(chunk_info->fspace, H5S_SELECT_APPEND, (size_t)1, coords_in_chunk) < 0) + if(H5S_select_elements(chunk_info->fspace, H5S_SELECT_APPEND, (hsize_t)1, coords_in_chunk) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "unable to select element") /* Increment the number of elemented selected in chunk */ @@ -2088,7 +2088,7 @@ H5D__chunk_mem_cb(void H5_ATTR_UNUSED *elem, const H5T_t H5_ATTR_UNUSED *type, u } /* end else */ /* Move memory selection iterator to next element in selection */ - if(H5S_SELECT_ITER_NEXT(&fm->mem_iter, (size_t)1) < 0) + if(H5S_SELECT_ITER_NEXT(&fm->mem_iter, (hsize_t)1) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "unable to move to next iterator location") done: diff --git a/src/H5Dint.c b/src/H5Dint.c index b6c0341..2bf7f6e 100644 --- a/src/H5Dint.c +++ b/src/H5Dint.c @@ -2544,7 +2544,7 @@ H5D__vlen_get_buf_size(void H5_ATTR_UNUSED *elem, hid_t type_id, unsigned H5_ATT HGOTO_ERROR(H5E_DATASET, H5E_NOSPACE, FAIL, "can't resize tbuf") /* Select point to read in */ - if(H5S_select_elements(vlen_bufsize->fspace, H5S_SELECT_SET, (size_t)1, point) < 0) + if(H5S_select_elements(vlen_bufsize->fspace, H5S_SELECT_SET, (hsize_t)1, point) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTCREATE, FAIL, "can't select point") /* Read in the point (with the custom VL memory allocator) */ diff --git a/src/H5Dio.c b/src/H5Dio.c index 280d602..aee3c35 100644 --- a/src/H5Dio.c +++ b/src/H5Dio.c @@ -49,10 +49,6 @@ /* Local Prototypes */ /********************/ -/* Internal I/O routines */ -static herr_t H5D__pre_write(H5D_t *dset, hbool_t direct_write, hid_t mem_type_id, - const H5S_t *mem_space, const H5S_t *file_space, hid_t dxpl_id, const void *buf); - /* Setup/teardown routines */ static herr_t H5D__ioinfo_init(H5D_t *dset, #ifndef H5_HAVE_PARALLEL @@ -324,18 +320,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__pre_write - * - * Purpose: Preparation for writing data. + * Function: H5D__pre_write * - * Return: Non-negative on success/Negative on failure + * Purpose: Preparation for writing data. * - * Programmer: Raymond Lu - * 2 November 2012 + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ -static herr_t +herr_t H5D__pre_write(H5D_t *dset, hbool_t direct_write, hid_t mem_type_id, const H5S_t *mem_space, const H5S_t *file_space, hid_t dxpl_id, const void *buf) diff --git a/src/H5Dmpio.c b/src/H5Dmpio.c index 79572c0..94d763d 100644 --- a/src/H5Dmpio.c +++ b/src/H5Dmpio.c @@ -2859,6 +2859,7 @@ H5D__chunk_redistribute_shared_chunks(const H5D_io_info_t *io_info, const H5D_ty int *send_displacements = NULL; int scatter_recvcount_int; int mpi_rank, mpi_size, mpi_code; + hid_t fapl_id = -1; /* File access property list for H5S_encode() */ herr_t ret_value = SUCCEED; FUNC_ENTER_STATIC @@ -2873,6 +2874,9 @@ H5D__chunk_redistribute_shared_chunks(const H5D_io_info_t *io_info, const H5D_ty if ((mpi_size = H5F_mpi_get_size(io_info->dset->oloc.file)) < 0) HGOTO_ERROR(H5E_IO, H5E_MPI, FAIL, "unable to obtain mpi size") + if((fapl_id = H5F_get_access_plist(io_info->dset->oloc.file, FALSE)) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get fapl") + if (*local_chunk_array_num_entries) if (NULL == (send_requests = (MPI_Request *) H5MM_malloc(*local_chunk_array_num_entries * sizeof(MPI_Request)))) HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "couldn't allocate send requests buffer") @@ -2978,7 +2982,7 @@ H5D__chunk_redistribute_shared_chunks(const H5D_io_info_t *io_info, const H5D_ty /* Determine size of serialized chunk file dataspace, plus the size of * the data being written */ - if (H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size) < 0) + if (H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size, fapl_id) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "unable to get encoded dataspace size") if ((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace)) < 0) @@ -2991,7 +2995,7 @@ H5D__chunk_redistribute_shared_chunks(const H5D_io_info_t *io_info, const H5D_ty /* Serialize the chunk's file dataspace into the buffer */ mod_data_p = mod_data[num_send_requests]; - if (H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size) < 0) + if (H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size, fapl_id) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "unable to encode dataspace") /* Intialize iterator for memory selection */ diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h index beb1089..542abd0 100644 --- a/src/H5Dpkg.h +++ b/src/H5Dpkg.h @@ -598,6 +598,8 @@ H5_DLL herr_t H5D_set_io_info_dxpls(H5D_io_info_t *io_info, hid_t dxpl_id); H5_DLL herr_t H5D__format_convert(H5D_t *dataset, hid_t dxpl_id); /* Internal I/O routines */ +H5_DLL herr_t H5D__pre_write(H5D_t *dset, hbool_t direct_write, hid_t mem_type_id, + const H5S_t *mem_space, const H5S_t *file_space, hid_t dxpl_id, const void *buf); H5_DLL herr_t H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, const H5S_t *file_space, hid_t dset_xfer_plist, void *buf/*out*/); @@ -21,20 +21,20 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Aprivate.h" /* Attributes */ -#include "H5ACprivate.h" /* Metadata cache */ -#include "H5Dprivate.h" /* Datasets */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fpkg.h" /* File access */ -#include "H5FDprivate.h" /* File drivers */ -#include "H5Gprivate.h" /* Groups */ -#include "H5Iprivate.h" /* IDs */ -#include "H5MFprivate.h" /* File memory management */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5Pprivate.h" /* Property lists */ -#include "H5SMprivate.h" /* Shared Object Header Messages */ -#include "H5Tprivate.h" /* Datatypes */ +#include "H5private.h" /* Generic Functions */ +#include "H5Aprivate.h" /* Attributes */ +#include "H5ACprivate.h" /* Metadata cache */ +#include "H5Dprivate.h" /* Datasets */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fpkg.h" /* File access */ +#include "H5FDprivate.h" /* File drivers */ +#include "H5Gprivate.h" /* Groups */ +#include "H5Iprivate.h" /* IDs */ +#include "H5MFprivate.h" /* File memory management */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5Pprivate.h" /* Property lists */ +#include "H5SMprivate.h" /* Shared Object Header Messages */ +#include "H5Tprivate.h" /* Datatypes */ /****************/ @@ -377,83 +377,82 @@ done: /*------------------------------------------------------------------------- * Function: H5Fcreate * - * Purpose: This is the primary function for creating HDF5 files . The - * flags parameter determines whether an existing file will be - * overwritten or not. All newly created files are opened for - * both reading and writing. All flags may be combined with the - * bit-wise OR operator (`|') to change the behavior of the file - * create call. + * Purpose: This is the primary function for creating HDF5 files . The + * flags parameter determines whether an existing file will be + * overwritten or not. All newly created files are opened for + * both reading and writing. All flags may be combined with the + * bit-wise OR operator (`|') to change the behavior of the file + * create call. * - * The more complex behaviors of a file's creation and access - * are controlled through the file-creation and file-access - * property lists. The value of H5P_DEFAULT for a template - * value indicates that the library should use the default - * values for the appropriate template. + * The more complex behaviors of a file's creation and access + * are controlled through the file-creation and file-access + * property lists. The value of H5P_DEFAULT for a template + * value indicates that the library should use the default + * values for the appropriate template. * * See also: H5Fpublic.h for the list of supported flags. H5Ppublic.h for - * the list of file creation and file access properties. + * the list of file creation and file access properties. * - * Return: Success: A file ID - * Failure: FAIL + * Return: Success: A file ID + * Failure: FAIL *------------------------------------------------------------------------- */ hid_t H5Fcreate(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id) { - H5F_t *new_file = NULL; /*file struct for new file */ - hid_t dxpl_id = H5AC_ind_read_dxpl_id; /*dxpl used by library */ - hid_t ret_value; /*return value */ + H5F_t *new_file = NULL; /* file struct for new file */ + hid_t dxpl_id = H5AC_ind_read_dxpl_id;/* dxpl used by library */ + hid_t ret_value; /* return value */ FUNC_ENTER_API(FAIL) H5TRACE4("i", "*sIuii", filename, flags, fcpl_id, fapl_id); /* Check/fix arguments */ - if(!filename || !*filename) + if (!filename || !*filename) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file name") + /* In this routine, we only accept the following flags: * H5F_ACC_EXCL, H5F_ACC_TRUNC and H5F_ACC_SWMR_WRITE */ - if(flags & ~(H5F_ACC_EXCL | H5F_ACC_TRUNC | H5F_ACC_SWMR_WRITE)) + if (flags & ~(H5F_ACC_EXCL | H5F_ACC_TRUNC | H5F_ACC_SWMR_WRITE)) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid flags") + /* The H5F_ACC_EXCL and H5F_ACC_TRUNC flags are mutually exclusive */ - if((flags & H5F_ACC_EXCL) && (flags & H5F_ACC_TRUNC)) + if ((flags & H5F_ACC_EXCL) && (flags & H5F_ACC_TRUNC)) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "mutually exclusive flags for file creation") /* Check file creation property list */ - if(H5P_DEFAULT == fcpl_id) + if (H5P_DEFAULT == fcpl_id) fcpl_id = H5P_FILE_CREATE_DEFAULT; else - if(TRUE != H5P_isa_class(fcpl_id, H5P_FILE_CREATE)) + if (TRUE != H5P_isa_class(fcpl_id, H5P_FILE_CREATE)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not file create property list") /* Verify access property list and get correct dxpl */ - if(H5P_verify_apl_and_dxpl(&fapl_id, H5P_CLS_FACC, &dxpl_id, H5I_INVALID_HID, TRUE) < 0) + if (H5P_verify_apl_and_dxpl(&fapl_id, H5P_CLS_FACC, &dxpl_id, H5I_INVALID_HID, TRUE) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "can't set access and transfer property lists") - /* - * Adjust bit flags by turning on the creation bit and making sure that + /* Adjust bit flags by turning on the creation bit and making sure that * the EXCL or TRUNC bit is set. All newly-created files are opened for * reading and writing. */ - if (0==(flags & (H5F_ACC_EXCL|H5F_ACC_TRUNC))) - flags |= H5F_ACC_EXCL; /*default*/ + if (0 == (flags & (H5F_ACC_EXCL | H5F_ACC_TRUNC))) + flags |= H5F_ACC_EXCL; /*default*/ flags |= H5F_ACC_RDWR | H5F_ACC_CREAT; - /* - * Create a new file or truncate an existing file. - */ - if(NULL == (new_file = H5F_open(filename, flags, fcpl_id, fapl_id, dxpl_id))) + /* Create a new file or truncate an existing file. */ + if (NULL == (new_file = H5F_open(filename, flags, fcpl_id, fapl_id, dxpl_id))) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to create file") /* Get an atom for the file */ - if((ret_value = H5I_register(H5I_FILE, new_file, TRUE)) < 0) + if ((ret_value = H5I_register(H5I_FILE, new_file, TRUE)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to atomize file") /* Keep this ID in file object structure */ new_file->file_id = ret_value; done: - if(ret_value < 0 && new_file && H5F_try_close(new_file, NULL) < 0) + if (ret_value < 0 && new_file && H5F_try_close(new_file, NULL) < 0) HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "problems closing file") FUNC_LEAVE_API(ret_value) @@ -463,46 +462,28 @@ done: /*------------------------------------------------------------------------- * Function: H5Fopen * - * Purpose: This is the primary function for accessing existing HDF5 - * files. The FLAGS argument determines whether writing to an - * existing file will be allowed or not. All flags may be - * combined with the bit-wise OR operator (`|') to change the - * behavior of the file open call. The more complex behaviors - * of a file's access are controlled through the file-access - * property list. - * - * See Also: H5Fpublic.h for a list of possible values for FLAGS. - * - * Return: Success: A file ID - * Failure: FAIL - * - * Modifications: - * Robb Matzke, 1997-07-18 - * File struct creation and destruction is through H5F_new() and - * H5F__dest(). Reading the root symbol table entry is done with - * H5G_decode(). - * - * Robb Matzke, 1997-09-23 - * Most of the work is now done by H5F_open() since H5Fcreate() - * and H5Fopen() originally contained almost identical code. - * - * Robb Matzke, 1998-02-18 - * Added better error checking for the flags and the file access - * property list. It used to be possible to make the library - * dump core by passing an object ID that was not a file access - * property list. - * - * Robb Matzke, 1999-08-02 - * The file access property list is passed to the H5F_open() as - * object IDs. + * Purpose: This is the primary function for accessing existing HDF5 + * files. The FLAGS argument determines whether writing to an + * existing file will be allowed or not. All flags may be + * combined with the bit-wise OR operator (`|') to change the + * behavior of the file open call. The more complex behaviors + * of a file's access are controlled through the file-access + * property list. + * + * See Also: H5Fpublic.h for a list of possible values for FLAGS. + * + * Return: Success: A file ID + * + * Failure: FAIL + * *------------------------------------------------------------------------- */ hid_t H5Fopen(const char *filename, unsigned flags, hid_t fapl_id) { - H5F_t *new_file = NULL; /* file struct for new file */ - hid_t dxpl_id = H5AC_ind_read_dxpl_id; /* dxpl used by library */ - hid_t ret_value; /* return value */ + H5F_t *new_file = NULL; /* file struct for new file */ + hid_t dxpl_id = H5AC_ind_read_dxpl_id; /* dxpl used by library */ + hid_t ret_value; /* return value */ FUNC_ENTER_API(FAIL) H5TRACE3("i", "*sIui", filename, flags, fapl_id); @@ -685,28 +666,28 @@ H5Fclose(hid_t file_id) H5TRACE1("e", "i", file_id); /* Check/fix arguments. */ - if(H5I_FILE != H5I_get_type(file_id)) + if (H5I_FILE != H5I_get_type(file_id)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file ID") /* Flush file if this is the last reference to this id and we have write * intent, unless it will be flushed by the "shared" file being closed. * This is only necessary to replicate previous behaviour, and could be - * disabled by an option/property to improve performance. */ - if(NULL == (f = (H5F_t *)H5I_object(file_id))) + * disabled by an option/property to improve performance. + */ + if (NULL == (f = (H5F_t *)H5I_object(file_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid file identifier") - if((f->shared->nrefs > 1) && (H5F_INTENT(f) & H5F_ACC_RDWR)) { - if((nref = H5I_get_ref(file_id, FALSE)) < 0) + if ((f->shared->nrefs > 1) && (H5F_INTENT(f) & H5F_ACC_RDWR)) { + if ((nref = H5I_get_ref(file_id, FALSE)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't get ID ref count") - if(nref == 1) - if(H5F__flush(f, H5AC_ind_read_dxpl_id, H5AC_rawdata_dxpl_id, FALSE) < 0) + if (nref == 1) + if (H5F__flush(f, H5AC_ind_read_dxpl_id, H5AC_rawdata_dxpl_id, FALSE) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush cache") - } /* end if */ + } - /* - * Decrement reference count on atom. When it reaches zero the file will + /* Decrement reference count on atom. When it reaches zero the file will * be closed. */ - if(H5I_dec_app_ref(file_id) < 0) + if (H5I_dec_app_ref(file_id) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTCLOSEFILE, FAIL, "decrementing file ID failed") done: @@ -119,7 +119,7 @@ H5FD__init_package(void) FUNC_ENTER_PACKAGE if(H5I_register_type(H5I_VFL_CLS) < 0) - HGOTO_ERROR(H5E_VFL, H5E_CANTINIT, FAIL, "unable to initialize interface") + HGOTO_ERROR(H5E_VFL, H5E_CANTINIT, FAIL, "unable to initialize interface") /* Reset the file serial numbers */ H5FD_file_serial_no_g = 0; @@ -151,18 +151,18 @@ H5FD_term_package(void) FUNC_ENTER_NOAPI_NOINIT_NOERR if(H5_PKG_INIT_VAR) { - if(H5I_nmembers(H5I_VFL) > 0) { - (void)H5I_clear_type(H5I_VFL, FALSE, FALSE); + if(H5I_nmembers(H5I_VFL) > 0) { + (void)H5I_clear_type(H5I_VFL, FALSE, FALSE); n++; /*H5I*/ - } /* end if */ + } /* end if */ else { - /* Destroy the VFL driver id group */ - n += (H5I_dec_type_ref(H5I_VFL) > 0); + /* Destroy the VFL driver ID group */ + n += (H5I_dec_type_ref(H5I_VFL) > 0); - /* Mark closed */ + /* Mark closed */ if(0 == n) H5_PKG_INIT_VAR = FALSE; - } /* end else */ + } /* end else */ } /* end if */ FUNC_LEAVE_NOAPI(n) @@ -247,7 +247,7 @@ H5FDregister(const H5FD_class_t *cls) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid free-list mapping") /* Create the new class ID */ - if((ret_value=H5FD_register(cls, sizeof(H5FD_class_t), TRUE)) < 0) + if((ret_value = H5FD_register(cls, sizeof(H5FD_class_t), TRUE)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register file driver ID") done: diff --git a/src/H5Ffake.c b/src/H5Ffake.c index 6072f2e..86c4a3d 100644 --- a/src/H5Ffake.c +++ b/src/H5Ffake.c @@ -15,9 +15,10 @@ /* Packages needed by this file... */ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fpkg.h" /* File access */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Fpkg.h" /* File access */ /* PRIVATE PROTOTYPES */ @@ -40,9 +41,11 @@ *------------------------------------------------------------------------- */ H5F_t * -H5F_fake_alloc(uint8_t sizeof_size) +H5F_fake_alloc(uint8_t sizeof_size, hid_t fapl_id) { H5F_t *f = NULL; /* Pointer to fake file struct */ + H5P_genplist_t *plist; /* Property list */ + hbool_t latest; H5F_t *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI(NULL) @@ -59,6 +62,16 @@ H5F_fake_alloc(uint8_t sizeof_size) else f->shared->sizeof_size = sizeof_size; + /* Activate latest version support according to the setting in fapl_id */ + /* See H5F_new() in H5Fint.c */ + if(NULL == (plist = (H5P_genplist_t *)H5I_object(fapl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not file access property list") + + if(H5P_get(plist, H5F_ACS_LATEST_FORMAT_NAME, &latest) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get 'latest format' flag") + if(latest) + f->shared->latest_flags |= H5F_LATEST_ALL_FLAGS; + /* Set return value */ ret_value = f; diff --git a/src/H5Fint.c b/src/H5Fint.c index a48e41c..65b8afb 100644 --- a/src/H5Fint.c +++ b/src/H5Fint.c @@ -409,39 +409,39 @@ H5F_get_objects_cb(void *obj_ptr, hid_t obj_id, void *key) H5O_loc_t *oloc; /* Group entry info for object */ switch(olist->obj_type) { - case H5I_ATTR: - oloc = H5A_oloc((H5A_t *)obj_ptr); - break; - - case H5I_GROUP: - oloc = H5G_oloc((H5G_t *)obj_ptr); - break; - - case H5I_DATASET: - oloc = H5D_oloc((H5D_t *)obj_ptr); - break; - - case H5I_DATATYPE: - if(H5T_is_named((H5T_t*)obj_ptr)==TRUE) - oloc = H5T_oloc((H5T_t*)obj_ptr); - else - oloc = NULL; - break; - - case H5I_UNINIT: - case H5I_BADID: - case H5I_FILE: - case H5I_DATASPACE: - case H5I_REFERENCE: - case H5I_VFL: - case H5I_GENPROP_CLS: - case H5I_GENPROP_LST: - case H5I_ERROR_CLASS: - case H5I_ERROR_MSG: - case H5I_ERROR_STACK: - case H5I_NTYPES: + case H5I_ATTR: + oloc = H5A_oloc((H5A_t *)obj_ptr); + break; + + case H5I_GROUP: + oloc = H5G_oloc((H5G_t *)obj_ptr); + break; + + case H5I_DATASET: + oloc = H5D_oloc((H5D_t *)obj_ptr); + break; + + case H5I_DATATYPE: + if(H5T_is_named((H5T_t*)obj_ptr)==TRUE) + oloc = H5T_oloc((H5T_t*)obj_ptr); + else + oloc = NULL; + break; + + case H5I_UNINIT: + case H5I_BADID: + case H5I_FILE: + case H5I_DATASPACE: + case H5I_REFERENCE: + case H5I_VFL: + case H5I_GENPROP_CLS: + case H5I_GENPROP_LST: + case H5I_ERROR_CLASS: + case H5I_ERROR_MSG: + case H5I_ERROR_STACK: + case H5I_NTYPES: default: - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5_ITER_ERROR, "unknown data object") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5_ITER_ERROR, "unknown or invalid data object") } /* end switch */ if((olist->file_info.local && @@ -1574,7 +1574,7 @@ H5F__flush_phase2(H5F_t *f, hid_t meta_dxpl_id, hid_t raw_dxpl_id, hbool_t closi * * Purpose: Flushes cached data. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL *------------------------------------------------------------------------- */ herr_t @@ -2669,7 +2669,7 @@ H5F_set_latest_flags(H5F_t *f, unsigned flags) /* Sanity check */ HDassert(f); HDassert(f->shared); - HDassert(0 == ((~flags) & H5F_LATEST_ALL_FLAGS)); + HDassert(0 == ((flags) & ~H5F_LATEST_ALL_FLAGS)); f->shared->latest_flags = flags; diff --git a/src/H5Fmount.c b/src/H5Fmount.c index 3cd5c21..17d7850 100644 --- a/src/H5Fmount.c +++ b/src/H5Fmount.c @@ -25,9 +25,6 @@ #include "H5MMprivate.h" /* Memory management */ /* PRIVATE PROTOTYPES */ -static herr_t H5F_mount(H5G_loc_t *loc, const char *name, H5F_t *child, - hid_t plist_id, hid_t dxpl_id); -static herr_t H5F_unmount(H5G_loc_t *loc, const char *name, hid_t dxpl_id); static void H5F_mount_count_ids_recurse(H5F_t *f, unsigned *nopen_files, unsigned *nopen_objs); @@ -99,7 +96,7 @@ done: * *------------------------------------------------------------------------- */ -static herr_t +herr_t H5F_mount(H5G_loc_t *loc, const char *name, H5F_t *child, hid_t H5_ATTR_UNUSED plist_id, hid_t dxpl_id) { @@ -265,7 +262,7 @@ done: * *------------------------------------------------------------------------- */ -static herr_t +herr_t H5F_unmount(H5G_loc_t *loc, const char *name, hid_t dxpl_id) { H5G_t *child_group = NULL; /* Child's group in parent mtab */ diff --git a/src/H5Fpkg.h b/src/H5Fpkg.h index d702506..b50b4e5 100644 --- a/src/H5Fpkg.h +++ b/src/H5Fpkg.h @@ -360,16 +360,16 @@ struct H5F_file_t { * to shared H5F_file_t structs. */ struct H5F_t { - char *open_name; /* Name used to open file */ - char *actual_name; /* Actual name of the file, after resolving symlinks, etc. */ - char *extpath; /* Path for searching target external link file */ - H5F_file_t *shared; /* The shared file info */ - unsigned nopen_objs; /* Number of open object headers*/ - H5FO_t *obj_count; /* # of time each object is opened through top file structure */ - hid_t file_id; /* ID of this file */ - hbool_t closing; /* File is in the process of being closed */ - struct H5F_t *parent; /* Parent file that this file is mounted to */ - unsigned nmounts; /* Number of children mounted to this file */ + char *open_name; /* Name used to open file */ + char *actual_name; /* Actual name of the file, after resolving symlinks, etc. */ + char *extpath; /* Path for searching target external link file */ + H5F_file_t *shared; /* The shared file info */ + unsigned nopen_objs; /* Number of open object headers */ + H5FO_t *obj_count; /* # of time each object is opened through top file structure */ + hid_t file_id; /* ID of this file */ + hbool_t closing; /* File is in the process of being closed */ + struct H5F_t *parent; /* Parent file that this file is mounted to */ + unsigned nmounts; /* Number of children mounted to this file */ #ifdef H5_HAVE_PARALLEL H5P_coll_md_read_flag_t coll_md_read; /* Do all metadata reads collectively */ hbool_t coll_md_write; /* Do all metadata writes collectively */ @@ -399,11 +399,12 @@ H5_DLL herr_t H5F__dest(H5F_t *f, hid_t meta_dxpl_id, hid_t raw_dxpl_id, hbool_t H5_DLL herr_t H5F__flush(H5F_t *f, hid_t meta_dxpl_id, hid_t raw_dxpl_id, hbool_t closing); H5_DLL htri_t H5F__is_hdf5(const char *name, hid_t meta_dxpl_id, hid_t raw_dxpl_id); H5_DLL herr_t H5F_get_objects(const H5F_t *f, unsigned types, size_t max_index, hid_t *obj_id_list, hbool_t app_ref, size_t *obj_id_count_ptr); -H5_DLL ssize_t H5F_get_file_image(H5F_t *f, void *buf_ptr, size_t buf_len, - hid_t meta_dxpl_id, hid_t raw_dxpl_id); +H5_DLL ssize_t H5F_get_file_image(H5F_t *f, void *buf_ptr, size_t buf_len, hid_t meta_dxpl_id, hid_t raw_dxpl_id); H5_DLL herr_t H5F_close(H5F_t *f); /* File mount related routines */ +H5_DLL herr_t H5F_mount(H5G_loc_t *loc, const char *name, H5F_t *child, hid_t plist_id, hid_t dxpl_id); +H5_DLL herr_t H5F_unmount(H5G_loc_t *loc, const char *name, hid_t dxpl_id); H5_DLL herr_t H5F_close_mounts(H5F_t *f); H5_DLL int H5F_term_unmount_cb(void *obj_ptr, hid_t obj_id, void *key); H5_DLL herr_t H5F_mount_count_ids(H5F_t *f, unsigned *nopen_files, unsigned *nopen_objs); diff --git a/src/H5Fprivate.h b/src/H5Fprivate.h index eba48de..47f72e7 100644 --- a/src/H5Fprivate.h +++ b/src/H5Fprivate.h @@ -18,6 +18,9 @@ #ifndef _H5Fprivate_H #define _H5Fprivate_H +/* Early typedefs to avoid circular dependencies */ +typedef struct H5F_t H5F_t; + /* Include package's public header */ #include "H5Fpublic.h" @@ -309,6 +312,7 @@ #define H5F_SIEVE_BUF_SIZE(F) ((F)->shared->sieve_buf_size) #define H5F_GC_REF(F) ((F)->shared->gc_ref) #define H5F_USE_LATEST_FLAGS(F,FL) ((F)->shared->latest_flags & (FL)) +#define H5F_GET_LATEST_FLAGS(F) ((F)->shared->latest_flags) #define H5F_STORE_MSG_CRT_IDX(F) ((F)->shared->store_msg_crt_idx) #define H5F_SET_STORE_MSG_CRT_IDX(F, FL) ((F)->shared->store_msg_crt_idx = (FL)) #define H5F_GRP_BTREE_SHARED(F) ((F)->shared->grp_btree_shared) @@ -365,7 +369,8 @@ #define H5F_RDCC_W0(F) (H5F_rdcc_w0(F)) #define H5F_SIEVE_BUF_SIZE(F) (H5F_sieve_buf_size(F)) #define H5F_GC_REF(F) (H5F_gc_ref(F)) -#define H5F_USE_LATEST_FLAGS(F,FL) (H5F_use_latest_flags(F,FL)) +#define H5F_USE_LATEST_FLAGS(F,FL) (H5F_use_latest_flags(F,FL)) +#define H5F_GET_LATEST_FLAGS(F) (H5F_get_latest_flags(F)) #define H5F_STORE_MSG_CRT_IDX(F) (H5F_store_msg_crt_idx(F)) #define H5F_SET_STORE_MSG_CRT_IDX(F, FL) (H5F_set_store_msg_crt_idx((F), (FL))) #define H5F_GRP_BTREE_SHARED(F) (H5F_grp_btree_shared(F)) @@ -475,8 +480,8 @@ #define H5F_ACS_SIEVE_BUF_SIZE_NAME "sieve_buf_size" /* Maximum sieve buffer size (when data sieving is allowed by file driver) */ #define H5F_ACS_SDATA_BLOCK_SIZE_NAME "sdata_block_size" /* Minimum "small data" allocation block size (when aggregating "small" raw data allocations) */ #define H5F_ACS_GARBG_COLCT_REF_NAME "gc_ref" /* Garbage-collect references */ -#define H5F_ACS_FILE_DRV_NAME "driver-id/info" /* File driver ID & info */ -#define H5F_ACS_CLOSE_DEGREE_NAME "close_degree" /* File close degree */ +#define H5F_ACS_FILE_DRV_NAME "vfd_info" /* File driver ID & info */ +#define H5F_ACS_CLOSE_DEGREE_NAME "close_degree" /* File close degree */ #define H5F_ACS_FAMILY_OFFSET_NAME "family_offset" /* Offset position in file for family file driver */ #define H5F_ACS_FAMILY_NEWSIZE_NAME "family_newsize" /* New member size of family driver. (private property only used by h5repart) */ #define H5F_ACS_FAMILY_TO_SEC2_NAME "family_to_sec2" /* Whether to convert family to sec2 driver. (private property only used by h5repart) */ @@ -484,7 +489,7 @@ #define H5F_ACS_LATEST_FORMAT_NAME "latest_format" /* 'Use latest format version' flag */ #define H5F_ACS_WANT_POSIX_FD_NAME "want_posix_fd" /* Internal: query the file descriptor from the core VFD, instead of the memory address */ #define H5F_ACS_METADATA_READ_ATTEMPTS_NAME "metadata_read_attempts" /* # of metadata read attempts */ -#define H5F_ACS_OBJECT_FLUSH_CB_NAME "object_flush_cb" /* Object flush callback */ +#define H5F_ACS_OBJECT_FLUSH_CB_NAME "object_flush_cb" /* Object flush callback */ #define H5F_ACS_EFC_SIZE_NAME "efc_size" /* Size of external file cache */ #define H5F_ACS_FILE_IMAGE_INFO_NAME "file_image_info" /* struct containing initial file image and callback info */ #define H5F_ACS_CLEAR_STATUS_FLAGS_NAME "clear_status_flags" /* Whether to clear superblock status_flags (private property only used by h5clear) */ @@ -583,7 +588,7 @@ #define H5_SIZEOF_CHKSUM 4 /* v1 B-tree node signature */ -#define H5B_MAGIC "TREE" +#define H5B_MAGIC "TREE" /* v2 B-tree signatures */ #define H5B2_HDR_MAGIC "BTHD" /* Header */ @@ -613,7 +618,7 @@ #define H5HF_DBLOCK_MAGIC "FHDB" /* Direct block */ /* Global heap signature */ -#define H5HG_MAGIC "GCOL" +#define H5HG_MAGIC "GCOL" /* Local heap signature */ #define H5HL_MAGIC "HEAP" @@ -639,7 +644,8 @@ #define H5F_LATEST_STYLE_GROUP 0x0080 #define H5F_LATEST_OBJ_HEADER 0x0100 #define H5F_LATEST_SUPERBLOCK 0x0200 -#define H5F_LATEST_ALL_FLAGS (H5F_LATEST_DATATYPE | H5F_LATEST_DATASPACE | H5F_LATEST_ATTRIBUTE | H5F_LATEST_FILL_MSG | H5F_LATEST_PLINE_MSG | H5F_LATEST_LAYOUT_MSG | H5F_LATEST_NO_MOD_TIME_MSG | H5F_LATEST_STYLE_GROUP | H5F_LATEST_OBJ_HEADER | H5F_LATEST_SUPERBLOCK) +#define H5F_LATEST_DATASPACE_SELECTION 0x0400 +#define H5F_LATEST_ALL_FLAGS (H5F_LATEST_DATATYPE | H5F_LATEST_DATASPACE | H5F_LATEST_ATTRIBUTE | H5F_LATEST_FILL_MSG | H5F_LATEST_PLINE_MSG | H5F_LATEST_LAYOUT_MSG | H5F_LATEST_NO_MOD_TIME_MSG | H5F_LATEST_STYLE_GROUP | H5F_LATEST_OBJ_HEADER | H5F_LATEST_SUPERBLOCK | H5F_LATEST_DATASPACE_SELECTION) #define H5F_LATEST_DSET_MSG_FLAGS (H5F_LATEST_FILL_MSG | H5F_LATEST_PLINE_MSG | H5F_LATEST_LAYOUT_MSG) @@ -652,12 +658,12 @@ struct H5B_class_t; struct H5UC_t; struct H5O_loc_t; struct H5HG_heap_t; +struct H5VL_class_t; struct H5P_genplist_t; /* Forward declarations for anonymous H5F objects */ /* Main file structures */ -typedef struct H5F_t H5F_t; typedef struct H5F_file_t H5F_file_t; /* Block aggregation structure */ @@ -838,7 +844,7 @@ H5_DLL void H5F_addr_decode_len(size_t addr_len, const uint8_t **pp, haddr_t *ad H5_DLL void H5F_sfile_assert_num(unsigned n); /* Routines for creating & destroying "fake" file structures */ -H5_DLL H5F_t *H5F_fake_alloc(uint8_t sizeof_size); +H5_DLL H5F_t *H5F_fake_alloc(uint8_t sizeof_size, hid_t fapl_id); H5_DLL herr_t H5F_fake_free(H5F_t *f); /* Superblock related routines */ diff --git a/src/H5Fquery.c b/src/H5Fquery.c index cc2399b..26701b8 100644 --- a/src/H5Fquery.c +++ b/src/H5Fquery.c @@ -32,10 +32,10 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fpkg.h" /* File access */ -#include "H5FDprivate.h" /* File drivers */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fpkg.h" /* File access */ +#include "H5FDprivate.h" /* File drivers */ /****************/ @@ -686,12 +686,16 @@ H5F_gc_ref(const H5F_t *f) /*------------------------------------------------------------------------- - * Function: H5F_use_latest_flags + * Function: H5F_use_latest_flags * - * Purpose: Retrieve the 'latest version support' for the file. + * Purpose: Retrieve the requested 'latest version support' for the file. * - * Return: Success: Non-negative, the requested 'version support' - * Failure: (can't happen) + * Return: Success: Non-negative, the requested 'version support' + * Failure: (can't happen) + * + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Mar 5 2007 *------------------------------------------------------------------------- */ unsigned @@ -708,12 +712,39 @@ H5F_use_latest_flags(const H5F_t *f, unsigned fl) /*------------------------------------------------------------------------- - * Function: H5F_get_fc_degree + * Function: H5F_get_latest_flags * - * Purpose: Retrieve the 'file close degree' for the file. + * Purpose: Retrieve the 'latest version support' setting for the file. * - * Return: Success: Non-negative, the 'file close degree' - * Failure: (can't happen) + * Return: Success: Non-negative + * Failure: (can't happen) + * + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Mar 5 2007 + * + *------------------------------------------------------------------------- + */ +unsigned +H5F_get_latest_flags(const H5F_t *f) +{ + /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */ + FUNC_ENTER_NOAPI_NOINIT_NOERR + + HDassert(f); + HDassert(f->shared); + + FUNC_LEAVE_NOAPI(f->shared->latest_flags) +} /* end H5F_get_latest_flags() */ + + +/*------------------------------------------------------------------------- + * Function: H5F_get_fc_degree + * + * Purpose: Retrieve the 'file close degree' for the file. + * + * Return: Success: Non-negative, the 'file close degree' + * Failure: (can't happen) *------------------------------------------------------------------------- */ H5F_close_degree_t diff --git a/src/H5Gdeprec.c b/src/H5Gdeprec.c index 228fb9c..1cc7e15 100644 --- a/src/H5Gdeprec.c +++ b/src/H5Gdeprec.c @@ -695,29 +695,26 @@ done: /*------------------------------------------------------------------------- - * Function: H5Giterate + * Function: H5Giterate * - * Purpose: Iterates over the entries of a group. The LOC_ID and NAME - * identify the group over which to iterate and IDX indicates - * where to start iterating (zero means at the beginning). The - * OPERATOR is called for each member and the iteration - * continues until the operator returns non-zero or all members - * are processed. The operator is passed a group ID for the - * group being iterated, a member name, and OP_DATA for each - * member. + * Purpose: Iterates over the entries of a group. The LOC_ID and NAME + * identify the group over which to iterate and IDX indicates + * where to start iterating (zero means at the beginning). The + * OPERATOR is called for each member and the iteration + * continues until the operator returns non-zero or all members + * are processed. The operator is passed a group ID for the + * group being iterated, a member name, and OP_DATA for each + * member. * - * Note: Deprecated in favor of H5Literate + * NOTE: Deprecated in favor of H5Literate * - * Return: Success: The return value of the first operator that - * returns non-zero, or zero if all members were - * processed with no operator returning non-zero. + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. * - * Failure: Negative if something goes wrong within the - * library, or the negative value returned by one - * of the operators. - * - * Programmer: Robb Matzke - * Monday, March 23, 1998 + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. * *------------------------------------------------------------------------- */ @@ -725,21 +722,21 @@ herr_t H5Giterate(hid_t loc_id, const char *name, int *idx_p, H5G_iterate_t op, void *op_data) { - H5G_link_iterate_t lnk_op; /* Link operator */ - hsize_t last_obj; /* Index of last object looked at */ - hsize_t idx; /* Internal location to hold index */ - herr_t ret_value; + H5G_link_iterate_t lnk_op; /* Link operator */ + hsize_t last_obj; /* Index of last object looked at */ + hsize_t idx; /* Internal location to hold index */ + herr_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE5("e", "i*s*Isx*x", loc_id, name, idx_p, op, op_data); /* Check args */ - if(!name || !*name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") - if(idx_p && *idx_p < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index specified") - if(!op) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no operator specified") + if (!name || !*name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") + if (idx_p && *idx_p < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index specified") + if (!op) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no operator specified") /* Set number of objects looked at to zero */ last_obj = 0; @@ -750,11 +747,11 @@ H5Giterate(hid_t loc_id, const char *name, int *idx_p, H5G_iterate_t op, lnk_op.op_func.op_old = op; /* Call private function. */ - if((ret_value = H5G_iterate(loc_id, name, H5_INDEX_NAME, H5_ITER_INC, idx, &last_obj, &lnk_op, op_data, H5P_DEFAULT, H5AC_ind_read_dxpl_id)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_BADITER, FAIL, "group iteration failed") + if ((ret_value = H5G_iterate(loc_id, name, H5_INDEX_NAME, H5_ITER_INC, idx, &last_obj, &lnk_op, op_data, H5P_DEFAULT, H5AC_ind_read_dxpl_id)) < 0) + HGOTO_ERROR(H5E_SYM, H5E_BADITER, FAIL, "group iteration failed") /* Set the index we stopped at */ - if(idx_p) + if (idx_p) *idx_p = (int)last_obj; done: @@ -12,48 +12,40 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * FILE: H5I.c - Internal storage routines for handling "IDs" + * FILE: H5I.c - Internal storage routines for handling "IDs" * - * REMARKS: ID's which allow objects (void *'s currently) to be bundled - * into "types" for more general storage. + * REMARKS: IDs which allow objects (void * currently) to be bundled + * into "types" for more general storage. * - * DESIGN: The types are stored in an array of pointers to store each - * type in an element. Each "type" node contains a link to a - * hash table to manage the IDs in each type. Allowed types are - * values within the range 1 to H5I_MAX_NUM_TYPES and are given out - * at run-time. Types used by the library are stored in global - * variables defined in H5Ipublic.h. - * - * AUTHOR: Quincey Koziol - * - * MODIFICATIONS: - * 1/3/96 - Starting writing specs & coding prototype - * 1/7/96 - Finished coding prototype - * 6/10/97 - Moved into HDF5 library - * 5/18/04 - Expanded to allow registration of new types at run-time + * DESIGN: The types are stored in an array of pointers to store each + * type in an element. Each "type" node contains a link to a + * hash table to manage the IDs in each type. Allowed types are + * values within the range 1 to H5I_MAX_NUM_TYPES and are given out + * at run-time. Types used by the library are stored in global + * variables defined in H5Ipublic.h. */ #include "H5Imodule.h" /* This source code file is part of the H5I module */ -#include "H5private.h" /* Generic Functions */ -#include "H5ACprivate.h" /* Metadata cache */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FLprivate.h" /* Free Lists */ -#include "H5Ipkg.h" /* IDs */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5Oprivate.h" /* Object headers */ -#include "H5SLprivate.h" /* Skip Lists */ +#include "H5private.h" /* Generic Functions */ +#include "H5ACprivate.h" /* Metadata cache */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FLprivate.h" /* Free Lists */ +#include "H5Ipkg.h" /* IDs */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5Oprivate.h" /* Object headers */ +#include "H5SLprivate.h" /* Skip Lists */ /* Define this to compile in support for dumping ID information */ /* #define H5I_DEBUG_OUTPUT */ #ifndef H5I_DEBUG_OUTPUT -#include "H5Gprivate.h" /* Groups */ +#include "H5Gprivate.h" /* Groups */ #else /* H5I_DEBUG_OUTPUT */ -#define H5G_FRIEND /*suppress error about including H5Gpkg */ -#include "H5Gpkg.h" /* Groups */ -#include "H5Dprivate.h" /* Datasets */ -#include "H5Tprivate.h" /* Datatypes */ +#define H5G_FRIEND /* Suppress error about including H5Gpkg */ +#include "H5Gpkg.h" /* Groups */ +#include "H5Dprivate.h" /* Datasets */ +#include "H5Tprivate.h" /* Datatypes */ #endif /* H5I_DEBUG_OUTPUT */ /* Local Macros */ @@ -194,23 +186,19 @@ H5I_term_package(void) /*------------------------------------------------------------------------- - * Function: H5Iregister_type + * Function: H5Iregister_type * - * Purpose: Public interface to H5I_register_type. Creates a new type - * of ID's to give out. A specific number (RESERVED) of type - * entries may be reserved to enable "constant" values to be handed - * out which are valid IDs in the type, but which do not map to any - * data structures and are not allocated dynamically later. HASH_SIZE is - * the minimum hash table size to use for the type. FREE_FUNC is - * called with an object pointer when the object is removed from - * the type. + * Purpose: Public interface to H5I_register_type. Creates a new type + * of ID's to give out. A specific number (RESERVED) of type + * entries may be reserved to enable "constant" values to be handed + * out which are valid IDs in the type, but which do not map to any + * data structures and are not allocated dynamically later. HASH_SIZE is + * the minimum hash table size to use for the type. FREE_FUNC is + * called with an object pointer when the object is removed from + * the type. * - * Return: Success: Type ID of the new type - * Failure: H5I_BADID - * - * Programmers: Nathaniel Furrer - * James Laird - * Friday, April 30, 2004 + * Return: Success: Type ID of the new type + * Failure: H5I_BADID * *------------------------------------------------------------------------- */ @@ -278,18 +266,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_register_type + * Function: H5I_register_type * - * Purpose: Creates a new type of ID's to give out. - * The class is initialized or its reference count is incremented + * Purpose: Creates a new type of ID's to give out. + * The class is initialized or its reference count is incremented * (if it is already initialized). * - * Return: Success: Type ID of the new type - * Failure: H5I_BADID - * - * Programmers: Nathaniel Furrer - * James Laird - * Friday, April 30, 2004 + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -343,17 +326,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5Itype_exists + * Function: H5Itype_exists * * Purpose: Query function to inform the user if a given type is * currently registered with the library. * - * Return: Success: 1 if the type is registered, 0 if it is not - * Failure: Negative - * - * Programmer: James Laird - * Nathaniel Furrer - * Tuesday, June 29, 2004 + * Return: Success: 1 if the type is registered, 0 if it is not + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -365,10 +344,10 @@ H5Itype_exists(H5I_type_t type) FUNC_ENTER_API(FAIL) H5TRACE1("t", "It", type); - if(type <= H5I_BADID || type >= H5I_next_type) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid type number") + if (type <= H5I_BADID || type >= H5I_next_type) + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid type number") - if(NULL == H5I_id_type_list_g[type]) + if (NULL == H5I_id_type_list_g[type]) ret_value = FALSE; done: @@ -409,9 +388,9 @@ H5Inmembers(H5I_type_t type, hsize_t *num_members) * an error when the supplied type does not exist. */ if(type <= H5I_BADID || type >= H5I_next_type) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid type number") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid type number") if(NULL == H5I_id_type_list_g[type]) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "supplied type does not exist") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "supplied type does not exist") if(num_members) { int64_t members; @@ -693,15 +672,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5Iregister + * Function: H5Iregister * - * Purpose: Public interface to H5I_register. - * - * Return: Success: New object id. - * Failure: Negative + * Purpose: Public interface to H5I_register. * - * Programmer: Nathaniel Furrer - * James Laird + * Return: Success: New object id. + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -724,58 +700,54 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_register + * Function: H5I_register * - * Purpose: Registers an OBJECT in a TYPE and returns an ID for it. - * This routine does _not_ check for unique-ness of the objects, - * if you register an object twice, you will get two different - * IDs for it. This routine does make certain that each ID in a - * type is unique. IDs are created by getting a unique number - * for the type the ID is in and incorporating the type into - * the ID which is returned to the user. - * - * Return: Success: New object id. - * Failure: Negative + * Purpose: Registers an OBJECT in a TYPE and returns an ID for it. + * This routine does _not_ check for unique-ness of the objects, + * if you register an object twice, you will get two different + * IDs for it. This routine does make certain that each ID in a + * type is unique. IDs are created by getting a unique number + * for the type the ID is in and incorporating the type into + * the ID which is returned to the user. * - * Programmer: Unknown + * Return: Success: New object id + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ hid_t H5I_register(H5I_type_t type, const void *object, hbool_t app_ref) { - H5I_id_type_t *type_ptr; /*ptr to the type */ - H5I_id_info_t *id_ptr; /*ptr to the new ID information */ - hid_t new_id; /*new ID */ - hid_t ret_value = SUCCEED; /*return value */ + H5I_id_type_t *type_ptr = NULL; /* ptr to the type */ + H5I_id_info_t *id_ptr = NULL; /* ptr to the new ID information */ + hid_t new_id = -1; /* new ID */ + hid_t ret_value = H5I_INVALID_HID; /* return value */ FUNC_ENTER_NOAPI(FAIL) /* Check arguments */ - if(type <= H5I_BADID || type >= H5I_next_type) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid type number") + if (type <= H5I_BADID || type >= H5I_next_type) + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, H5I_INVALID_HID, "invalid type number") type_ptr = H5I_id_type_list_g[type]; - if(NULL == type_ptr || type_ptr->init_count <= 0) - HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "invalid type") - if(NULL == (id_ptr = H5FL_MALLOC(H5I_id_info_t))) - HGOTO_ERROR(H5E_ATOM, H5E_NOSPACE, FAIL, "memory allocation failed") + if ((NULL == type_ptr) || (type_ptr->init_count <= 0)) + HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, H5I_INVALID_HID, "invalid type") + if (NULL == (id_ptr = H5FL_MALLOC(H5I_id_info_t))) + HGOTO_ERROR(H5E_ATOM, H5E_NOSPACE, H5I_INVALID_HID, "memory allocation failed") - /* Create the struct & it's ID */ + /* Create the struct & its ID */ new_id = H5I_MAKE(type, type_ptr->nextid); id_ptr->id = new_id; - id_ptr->count = 1; /*initial reference count*/ + id_ptr->count = 1; /* initial reference count */ id_ptr->app_count = !!app_ref; id_ptr->obj_ptr = object; /* Insert into the type */ - if(H5SL_insert(type_ptr->ids, id_ptr, &id_ptr->id) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTINSERT, FAIL, "can't insert ID node into skip list") + if (H5SL_insert(type_ptr->ids, id_ptr, &id_ptr->id) < 0) + HGOTO_ERROR(H5E_ATOM, H5E_CANTINSERT, H5I_INVALID_HID, "can't insert ID node into skip list") type_ptr->id_count++; type_ptr->nextid++; - /* - * Sanity check for the 'nextid' getting too large and wrapping around. - */ + /* Sanity check for the 'nextid' getting too large and wrapping around */ HDassert(type_ptr->nextid <= ID_MASK); /* Set return value */ @@ -789,27 +761,23 @@ done: /*------------------------------------------------------------------------- * Function: H5I_register_with_id * - * Purpose: Registers an OBJECT in a TYPE with the supplied ID for it. - * This routine will check to ensure the supplied ID is not already - * in use, and ensure that it is a valid ID for the given type, - * but will NOT check to ensure the OBJECT is not already - * registered (thus, it is possible to register one object under - * multiple IDs). + * Purpose: Registers an OBJECT in a TYPE with the supplied ID for it. + * This routine will check to ensure the supplied ID is not already + * in use, and ensure that it is a valid ID for the given type, + * but will NOT check to ensure the OBJECT is not already + * registered (thus, it is possible to register one object under + * multiple IDs). * - * Return: Success: 0 - * Failure: -1 - * - * Programmer: Mike McGreevy - * Wednesday, July 21, 2010 + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t H5I_register_with_id(H5I_type_t type, const void *object, hbool_t app_ref, hid_t id) { - H5I_id_type_t *type_ptr; /*ptr to the type */ - H5I_id_info_t *id_ptr; /*ptr to the new ID information */ - herr_t ret_value = SUCCEED; /*return value */ + H5I_id_type_t *type_ptr; /* ptr to the type */ + H5I_id_info_t *id_ptr; /* ptr to the new ID information */ + herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_NOAPI(FAIL) @@ -1199,10 +1167,10 @@ H5I_remove(hid_t id) /* Check arguments */ type = H5I_TYPE(id); if(type <= H5I_BADID || type >= H5I_next_type) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, NULL, "invalid type number") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, NULL, "invalid type number") type_ptr = H5I_id_type_list_g[type]; if(type_ptr == NULL || type_ptr->init_count <= 0) - HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, NULL, "invalid type") + HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, NULL, "invalid type") /* Remove the node from the type */ if(NULL == (ret_value = H5I__remove_common(type_ptr, id))) @@ -1238,7 +1206,7 @@ H5Idec_ref(hid_t id) /* Check arguments */ if(id < 0) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID") + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID") /* Do actual decrement operation */ if((ret_value = H5I_dec_app_ref(id)) < 0) @@ -1371,16 +1339,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_dec_app_ref_always_close - * - * Purpose: H5I_dec_app_ref wrapper for case of always closing the ID, - * even when the free routine fails + * Function: H5I_dec_app_ref_always_close * - * Return: Success: New app. reference count. - * Failure: Negative + * Purpose: H5I_dec_app_ref wrapper for case of always closing the ID, + * even when the free routine fails * - * Programmer: Quincey Koziol - * Sept 16, 2010 + * Return: Success: New app. reference count. + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -1398,7 +1363,7 @@ H5I_dec_app_ref_always_close(hid_t id) ret_value = H5I_dec_app_ref(id); /* Check for failure */ - if(ret_value < 0) { + if (ret_value < 0) { /* * If an object is closing, we can remove the ID even though the free * method might fail. This can happen when a mandatory filter fails to @@ -1408,7 +1373,7 @@ H5I_dec_app_ref_always_close(hid_t id) H5I_remove(id); HGOTO_ERROR(H5E_ATOM, H5E_CANTDEC, FAIL, "can't decrement ID ref count") - } /* end if */ + } done: FUNC_LEAVE_NOAPI(ret_value) @@ -1416,15 +1381,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5Iinc_ref - * - * Purpose: Increments the number of references outstanding for an ID. + * Function: H5Iinc_ref * - * Return: Success: New reference count - * Failure: Negative + * Purpose: Increments the number of references outstanding for an ID. * - * Programmer: Quincey Koziol - * Dec 7, 2003 + * Return: Success: New reference count + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -1437,11 +1399,11 @@ H5Iinc_ref(hid_t id) H5TRACE1("Is", "i", id); /* Check arguments */ - if(id < 0) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID") + if (id < 0) + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID") /* Do actual increment operation */ - if((ret_value = H5I_inc_ref(id, TRUE)) < 0) + if ((ret_value = H5I_inc_ref(id, TRUE)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTINC, FAIL, "can't increment ID ref count") done: @@ -1450,15 +1412,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_inc_ref - * - * Purpose: Increment the reference count for an object. + * Function: H5I_inc_ref * - * Return: Success: The new reference count. - * Failure: Negative + * Purpose: Increment the reference count for an object. * - * Programmer: Robb Matzke - * Thursday, July 29, 1999 + * Return: Success: The new reference count. + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -1474,8 +1433,8 @@ H5I_inc_ref(hid_t id, hbool_t app_ref) HDassert(id >= 0); /* General lookup of the ID */ - if(NULL == (id_ptr = H5I__find_id(id))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't locate ID") + if (NULL == (id_ptr = H5I__find_id(id))) + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't locate ID") /* Adjust reference counts */ ++(id_ptr->count); @@ -1491,15 +1450,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5Iget_ref - * - * Purpose: Retrieves the number of references outstanding for an ID. + * Function: H5Iget_ref * - * Return: Success: Reference count - * Failure: Negative + * Purpose: Retrieves the number of references outstanding for an ID. * - * Programmer: Quincey Koziol - * Dec 7, 2003 + * Return: Success: Reference count + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -1512,11 +1468,11 @@ H5Iget_ref(hid_t id) H5TRACE1("Is", "i", id); /* Check arguments */ - if(id < 0) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID") + if (id < 0) + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID") /* Do actual retrieve operation */ - if((ret_value = H5I_get_ref(id, TRUE)) < 0) + if ((ret_value = H5I_get_ref(id, TRUE)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't get ID ref count") done: @@ -1525,15 +1481,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_get_ref + * Function: H5I_get_ref * - * Purpose: Retrieve the reference count for an object. - * - * Return: Success: The reference count. - * Failure: Negative + * Purpose: Retrieve the reference count for an object. * - * Programmer: Quincey Koziol - * Saturday, Decemeber 6, 2003 + * Return: Success: The reference count. + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -1549,8 +1502,8 @@ H5I_get_ref(hid_t id, hbool_t app_ref) HDassert(id >= 0); /* General lookup of the ID */ - if(NULL == (id_ptr = H5I__find_id(id))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't locate ID") + if (NULL == (id_ptr = H5I__find_id(id))) + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't locate ID") /* Set return value */ ret_value = (int)(app_ref ? id_ptr->app_count : id_ptr->count); @@ -1561,16 +1514,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5Iinc_type_ref + * Function: H5Iinc_type_ref * - * Purpose: Increments the number of references outstanding for an ID type. + * Purpose: Increments the number of references outstanding for an ID type. * - * Return: Success: New reference count - * Failure: Negative - * - * Programmer: Nat Furrer - * James Laird - * April 30, 2004 + * Return: Success: New reference count + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -1583,14 +1532,14 @@ H5Iinc_type_ref(H5I_type_t type) H5TRACE1("Is", "It", type); /* Check arguments */ - if(type <= 0 || type >= H5I_next_type) + if (type <= 0 || type >= H5I_next_type) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID type") - if(H5I_IS_LIB_TYPE(type)) + if (H5I_IS_LIB_TYPE(type)) HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "cannot call public function on library type") /* Do actual increment operation */ - if((ret_value = H5I__inc_type_ref(type)) < 0) + if ((ret_value = H5I__inc_type_ref(type)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTINC, FAIL, "can't increment ID type ref count") done: @@ -1599,16 +1548,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5I__inc_type_ref - * - * Purpose: Increment the reference count for an ID type. + * Function: H5I__inc_type_ref * - * Return: Success: The new reference count. - * Failure: Negative + * Purpose: Increment the reference count for an ID type. * - * Programmer: James Laird - * Nat Furrer - * Friday, April 30, 2004 + * Return: Success: The new reference count + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -1625,8 +1570,8 @@ H5I__inc_type_ref(H5I_type_t type) /* Check arguments */ type_ptr = H5I_id_type_list_g[type]; - if(!type_ptr) - HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "invalid type") + if (!type_ptr) + HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "invalid type") /* Set return value */ ret_value = (int)(++(type_ptr->init_count)); @@ -1637,24 +1582,26 @@ done: /*------------------------------------------------------------------------- - * Function: H5Idec_type_ref - * - * Purpose: Decrements the reference count on an entire type of IDs. - * If the type reference count becomes zero then the type is - * destroyed along with all atoms in that type regardless of - * their reference counts. Destroying IDs involves calling - * the free-func for each ID's object and then adding the ID - * struct to the ID free list. Public interface to - * H5I_dec_type_ref. - * Returns the number of references to the type on success; a - * return value of 0 means that the type will have to be - * re-initialized before it can be used again (and should probably - * be set to H5I_UNINIT). - * - * Return: Number of references to type on success/Negative on failure - * - * Programmer: Nathaniel Furrer - * James Laird + * Function: H5Idec_type_ref + * + * Purpose: Decrements the reference count on an entire type of IDs. + * If the type reference count becomes zero then the type is + * destroyed along with all atoms in that type regardless of + * their reference counts. Destroying IDs involves calling + * the free-func for each ID's object and then adding the ID + * struct to the ID free list. Public interface to + * H5I_dec_type_ref. + * Returns the number of references to the type on success; a + * return value of 0 means that the type will have to be + * re-initialized before it can be used again (and should probably + * be set to H5I_UNINIT). + * + * NOTE: Using an error type to also represent a count is semantially + * incorrect. We should consider fixing this in a future major + * release (DER). + * + * Return: Success: Number of references to type + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -1666,7 +1613,7 @@ H5Idec_type_ref(H5I_type_t type) FUNC_ENTER_API(FAIL) H5TRACE1("e", "It", type); - if(H5I_IS_LIB_TYPE(type)) + if (H5I_IS_LIB_TYPE(type)) HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "cannot call public function on library type") ret_value = H5I_dec_type_ref(type); @@ -1677,22 +1624,21 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_dec_type_ref - * - * Purpose: Decrements the reference count on an entire type of IDs. - * If the type reference count becomes zero then the type is - * destroyed along with all atoms in that type regardless of - * their reference counts. Destroying IDs involves calling - * the free-func for each ID's object and then adding the ID - * struct to the ID free list. - * Returns the number of references to the type on success; a - * return value of 0 means that the type will have to be - * re-initialized before it can be used again (and should probably - * be set to H5I_UNINIT). - * - * Return: Number of references to type on success/Negative on failure - * - * Programmer: Unknown + * Function: H5I_dec_type_ref + * + * Purpose: Decrements the reference count on an entire type of IDs. + * If the type reference count becomes zero then the type is + * destroyed along with all atoms in that type regardless of + * their reference counts. Destroying IDs involves calling + * the free-func for each ID's object and then adding the ID + * struct to the ID free list. + * Returns the number of references to the type on success; a + * return value of 0 means that the type will have to be + * re-initialized before it can be used again (and should probably + * be set to H5I_UNINIT). + * + * Return: Success: Number of references to type + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -1704,27 +1650,26 @@ H5I_dec_type_ref(H5I_type_t type) FUNC_ENTER_NOAPI(FAIL) - if(type <= H5I_BADID || type >= H5I_next_type) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid type number") + if (type <= H5I_BADID || type >= H5I_next_type) + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid type number") type_ptr = H5I_id_type_list_g[type]; - if(type_ptr == NULL || type_ptr->init_count <= 0) - HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "invalid type") + if (type_ptr == NULL || type_ptr->init_count <= 0) + HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "invalid type") - /* - * Decrement the number of users of the atomic type. If this is the + /* Decrement the number of users of the atomic type. If this is the * last user of the type then release all atoms from the type and * free all memory it used. The free function is invoked for each atom * being freed. */ - if(1 == type_ptr->init_count) { + if (1 == type_ptr->init_count) { H5I__destroy_type(type); ret_value = 0; - } /* end if */ + } else { --(type_ptr->init_count); ret_value = (herr_t)type_ptr->init_count; - } /* end else */ + } done: FUNC_LEAVE_NOAPI(ret_value) @@ -1732,16 +1677,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5Iget_type_ref - * - * Purpose: Retrieves the number of references outstanding for a type. + * Function: H5Iget_type_ref * - * Return: Success: Reference count - * Failure: Negative + * Purpose: Retrieves the number of references outstanding for a type. * - * Programmer: Nat Furrer - * James Laird - * April 30, 2004 + * Return: Success: Reference count + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -1754,14 +1695,14 @@ H5Iget_type_ref(H5I_type_t type) H5TRACE1("Is", "It", type); /* Check arguments */ - if(type <= 0 || type >= H5I_next_type) + if (type <= 0 || type >= H5I_next_type) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID type") - if(H5I_IS_LIB_TYPE(type)) + if (H5I_IS_LIB_TYPE(type)) HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "cannot call public function on library type") /* Do actual retrieve operation */ - if((ret_value = H5I__get_type_ref(type)) < 0) + if ((ret_value = H5I__get_type_ref(type)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't get ID type ref count") done: @@ -1770,25 +1711,21 @@ done: /*------------------------------------------------------------------------- - * Function: H5I__get_type_ref - * - * Purpose: Retrieve the reference count for an ID type. + * Function: H5I__get_type_ref * - * Return: Success: The reference count. + * Purpose: Retrieve the reference count for an ID type. * - * Failure: Negative + * Return: Success: The reference count. * - * Programmer: Nat Furrer - * James Laird - * April 30, 2004 + * Failure: Negative * *------------------------------------------------------------------------- */ static int H5I__get_type_ref(H5I_type_t type) { - H5I_id_type_t *type_ptr; /*ptr to the type */ - int ret_value = -1; /* Return value */ + H5I_id_type_t *type_ptr; /* Pointer to the type */ + int ret_value = -1; /* Return value */ FUNC_ENTER_STATIC @@ -1797,7 +1734,7 @@ H5I__get_type_ref(H5I_type_t type) /* Check arguments */ type_ptr = H5I_id_type_list_g[type]; - if(!type_ptr) + if (!type_ptr) HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "invalid type") /* Set return value */ @@ -1809,17 +1746,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5Iis_valid + * Function: H5Iis_valid * - * Purpose: Check if the given id is valid. An id is valid if it is in + * Purpose: Check if the given id is valid. An id is valid if it is in * use and has an application reference count of at least 1. * - * Return: Success: TRUE if the id is valid, FALSE otherwise. + * Return: Success: TRUE if the id is valid, FALSE otherwise. * - * Failure: Negative (never fails currently) - * - * Programmer: Neil Fortner - * Friday, October 31, 2008 (boo) + * Failure: Negative (never fails currently) * *------------------------------------------------------------------------- */ @@ -1835,9 +1769,7 @@ H5Iis_valid(hid_t id) /* Find the ID */ if (NULL == (id_ptr = H5I__find_id(id))) ret_value = FALSE; - - /* Check if the found id is an internal id */ - else if (!id_ptr->app_count) + else if (!id_ptr->app_count) /* Check if the found id is an internal id */ ret_value = FALSE; done: @@ -1846,19 +1778,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5I__search_cb - * - * Purpose: Callback routine for H5Isearch, when it calls H5I_iterate. - * Calls "user" callback search function, and then sets return - * value, based on the result of that callback. + * Function: H5I__search_cb * - * Return: Success: The first object in the type for which FUNC - * returns non-zero. NULL if FUNC returned zero - * for every object in the type. - * Failure: NULL + * Purpose: Callback routine for H5Isearch, when it calls H5I_iterate. + * Calls "user" callback search function, and then sets return + * value, based on the result of that callback. * - * Programmer: Quincey Koziol - * Friday, March 30, 2012 + * Return: Success: The first object in the type for which FUNC + * returns non-zero. NULL if FUNC returned zero + * for every object in the type. + * Failure: NULL * *------------------------------------------------------------------------- */ @@ -1871,7 +1800,7 @@ H5I__search_cb(void *obj, hid_t id, void *_udata) FUNC_ENTER_STATIC_NOERR ret_value = (*udata->app_cb)(obj, id, udata->app_key); - if(ret_value > 0) + if (ret_value > 0) udata->ret_obj = obj; FUNC_LEAVE_NOAPI(ret_value) @@ -1879,26 +1808,22 @@ H5I__search_cb(void *obj, hid_t id, void *_udata) /*------------------------------------------------------------------------- - * Function: H5Isearch + * Function: H5Isearch * - * Purpose: Apply function FUNC to each member of type TYPE and return a - * pointer to the first object for which FUNC returns non-zero. - * The FUNC should take a pointer to the object and the KEY as - * arguments and return non-zero to terminate the search (zero - * to continue). Public interface to H5I_search. + * Purpose: Apply function FUNC to each member of type TYPE and return a + * pointer to the first object for which FUNC returns non-zero. + * The FUNC should take a pointer to the object and the KEY as + * arguments and return non-zero to terminate the search (zero + * to continue). Public interface to H5I_search. * - * Limitation: Currently there is no way to start searching from where a - * previous search left off. + * Limitation: Currently there is no way to start searching from where a + * previous search left off. * - * Return: Success: The first object in the type for which FUNC - * returns non-zero. NULL if FUNC returned zero - * for every object in the type. - * - * Failure: NULL + * Return: Success: The first object in the type for which FUNC + * returns non-zero. NULL if FUNC returned zero + * for every object in the type. * - * Programmer: James Laird - * Nathaniel Furrer - * Friday, April 23, 2004 + * Failure: NULL * *------------------------------------------------------------------------- */ @@ -1912,7 +1837,7 @@ H5Isearch(H5I_type_t type, H5I_search_func_t func, void *key) H5TRACE3("*x", "Itx*x", type, func, key); /* Check arguments */ - if(H5I_IS_LIB_TYPE(type)) + if (H5I_IS_LIB_TYPE(type)) HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, NULL, "cannot call public function on library type") /* Set up udata struct */ @@ -1934,17 +1859,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5I__iterate_cb + * Function: H5I__iterate_cb * - * Purpose: Callback routine for H5I_iterate, invokes "user" callback + * Purpose: Callback routine for H5I_iterate, invokes "user" callback * function, and then sets return value, based on the result of * that callback. * - * Return: Success: Non-negative on success - * Failure: Negative - * - * Programmer: Quincey Koziol - * Thursday, October 3, 2013 + * Return: Success: Non-negative on success + * Failure: Negative * *------------------------------------------------------------------------- */ @@ -1976,29 +1898,25 @@ H5I__iterate_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) /*------------------------------------------------------------------------- * Function: H5I_iterate * - * Purpose: Apply function FUNC to each member of type TYPE (with - * non-zero application reference count if app_ref is TRUE). - * Stop if FUNC returns a non zero value (i.e. anything - * other than H5_ITER_CONT). + * Purpose: Apply function FUNC to each member of type TYPE (with + * non-zero application reference count if app_ref is TRUE). + * Stop if FUNC returns a non zero value (i.e. anything + * other than H5_ITER_CONT). * - * If FUNC returns a positive value (i.e. H5_ITER_STOP), - * return SUCCEED. + * If FUNC returns a positive value (i.e. H5_ITER_STOP), + * return SUCCEED. * - * If FUNC returns a negative value (i.e. H5_ITER_ERROR), - * return FAIL. + * If FUNC returns a negative value (i.e. H5_ITER_ERROR), + * return FAIL. * - * The FUNC should take a pointer to the object and the - * udata as arguments and return non-zero to terminate - * siteration, and zero to continue. - * - * Limitation: Currently there is no way to start the iteration from - * where a previous iteration left off. + * The FUNC should take a pointer to the object and the + * udata as arguments and return non-zero to terminate + * siteration, and zero to continue. * - * Return: Success: SUCCEED - * Failure: FAIL + * Limitation: Currently there is no way to start the iteration from + * where a previous iteration left off. * - * Programmer: John Mainzer - * Monday, December 6, 2011 + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -2011,12 +1929,12 @@ H5I_iterate(H5I_type_t type, H5I_search_func_t func, void *udata, hbool_t app_re FUNC_ENTER_NOAPI(FAIL) /* Check arguments */ - if(type <= H5I_BADID || type >= H5I_next_type) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid type number") + if (type <= H5I_BADID || type >= H5I_next_type) + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid type number") type_ptr = H5I_id_type_list_g[type]; /* Only iterate through ID list if it is initialized and there are IDs in type */ - if(type_ptr && type_ptr->init_count > 0 && type_ptr->id_count > 0) { + if (type_ptr && type_ptr->init_count > 0 && type_ptr->id_count > 0) { H5I_iterate_ud_t iter_udata; /* User data for iteration callback */ herr_t iter_status; /* Iteration status */ @@ -2026,9 +1944,9 @@ H5I_iterate(H5I_type_t type, H5I_search_func_t func, void *udata, hbool_t app_re iter_udata.app_ref = app_ref; /* Iterate over IDs */ - if((iter_status = H5SL_iterate(type_ptr->ids, H5I__iterate_cb, &iter_udata)) < 0) + if ((iter_status = H5SL_iterate(type_ptr->ids, H5I__iterate_cb, &iter_udata)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_BADITER, FAIL, "iteration failed") - } /* end if */ + } done: FUNC_LEAVE_NOAPI(ret_value) @@ -2036,16 +1954,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5I__find_id - * - * Purpose: Given an object ID find the info struct that describes the - * object. + * Function: H5I__find_id * - * Return: Success: Ptr to the object's info struct. + * Purpose: Given an object ID find the info struct that describes the + * object. * - * Failure: NULL + * Return: Success: A pointer to the object's info struct. * - * Programmer: Unknown + * Failure: NULL * *------------------------------------------------------------------------- */ @@ -2060,12 +1976,12 @@ H5I__find_id(hid_t id) /* Check arguments */ type = H5I_TYPE(id); - if(type <= H5I_BADID || type >= H5I_next_type) - HGOTO_DONE(NULL) + if (type <= H5I_BADID || type >= H5I_next_type) + HGOTO_DONE(NULL) type_ptr = H5I_id_type_list_g[type]; - if(!type_ptr || type_ptr->init_count <= 0) - HGOTO_DONE(NULL) + if (!type_ptr || type_ptr->init_count <= 0) + HGOTO_DONE(NULL) /* Locate the ID node for the ID */ ret_value = (H5I_id_info_t *)H5SL_search(type_ptr->ids, &id); @@ -2076,17 +1992,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5Iget_name - * - * Purpose: Gets a name of an object from its ID. + * Function: H5Iget_name * - * Return: Success: The length of name. + * Purpose: Gets a name of an object from its ID. * - * Failure: -1 + * Return: Success: The length of the name * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: July 26, 2002 + * Failure: -1 * * Comments: Public function * If `name' is non-NULL then write up to `size' bytes into that @@ -2110,12 +2022,12 @@ H5Iget_name(hid_t id, char *name/*out*/, size_t size) H5TRACE3("Zs", "ixz", id, name, size); /* Get object location */ - if(H5G_loc(id, &loc) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't retrieve object location") + if (H5G_loc(id, &loc) < 0) + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't retrieve object location") /* Call internal group routine to retrieve object's name */ - if((ret_value = H5G_get_name(&loc, name, size, NULL, H5P_DEFAULT, H5AC_ind_read_dxpl_id)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't retrieve object name") + if ((ret_value = H5G_get_name(&loc, name, size, NULL, H5P_DEFAULT, H5AC_ind_read_dxpl_id)) < 0) + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't retrieve object name") done: FUNC_LEAVE_API(ret_value) @@ -2123,30 +2035,27 @@ done: /*------------------------------------------------------------------------- - * Function: H5Iget_file_id + * Function: H5Iget_file_id * - * Purpose: The public version of H5I_get_file_id(), obtains the file + * Purpose: The public version of H5I_get_file_id(), obtains the file * ID given an object ID. User has to close this ID. * - * Return: Success: file ID - * - * Failure: a negative value + * Return: Success: The file ID associated with the object * - * Programmer: Raymond Lu - * Oct 27, 2003 + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ hid_t H5Iget_file_id(hid_t obj_id) { - hid_t ret_value; /* Return value */ + hid_t ret_value = H5I_INVALID_HID; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE1("i", "i", obj_id); - if((ret_value = H5I_get_file_id(obj_id, TRUE)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't retrieve file ID") + if ((ret_value = H5I_get_file_id(obj_id, TRUE)) < 0) + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, H5I_INVALID_HID, "can't retrieve file ID") done: FUNC_LEAVE_API(ret_value) @@ -2154,50 +2063,48 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_get_file_id + * Function: H5I_get_file_id * - * Purpose: The private version of H5Iget_file_id(), obtains the file + * Purpose: The private version of H5Iget_file_id(), obtains the file * ID given an object ID. * - * Return: Success: file ID - * Failure: a negative value + * Return: Success: The file ID associated with the object * - * Programmer: Raymond Lu - * Oct 27, 2003 + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ hid_t H5I_get_file_id(hid_t obj_id, hbool_t app_ref) { - H5I_type_t type; /* ID type */ - hid_t ret_value = H5I_INVALID_HID; /* Return value */ + H5I_type_t type; /* ID type */ + hid_t ret_value = H5I_INVALID_HID; /* Return value */ FUNC_ENTER_NOAPI_NOINIT /* Get object type */ type = H5I_TYPE(obj_id); - if(type == H5I_FILE) { + if (type == H5I_FILE) { /* Increment reference count on file ID */ if(H5I_inc_ref(obj_id, app_ref) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTSET, FAIL, "incrementing file ID failed") + HGOTO_ERROR(H5E_ATOM, H5E_CANTSET, H5I_INVALID_HID, "incrementing file ID failed") /* Set return value */ ret_value = obj_id; - } /* end if */ - else if(type == H5I_DATATYPE || type == H5I_GROUP || type == H5I_DATASET || type == H5I_ATTR) { + } + else if (type == H5I_DATATYPE || type == H5I_GROUP || type == H5I_DATASET || type == H5I_ATTR) { H5G_loc_t loc; /* Location of object */ /* Get the object location information */ if(H5G_loc(obj_id, &loc) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't get object location") + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, H5I_INVALID_HID, "can't get object location") /* Get the file ID for the object */ if((ret_value = H5F_get_id(loc.oloc->file, app_ref)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't get file ID") - } /* end if */ + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, H5I_INVALID_HID, "can't get file ID") + } else - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid object ID") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, H5I_INVALID_HID, "invalid object ID") done: FUNC_LEAVE_NOAPI(ret_value) @@ -2206,34 +2113,29 @@ done: #ifdef H5I_DEBUG_OUTPUT /*------------------------------------------------------------------------- - * Function: H5I__debug_cb + * Function: H5I__debug_cb * - * Purpose: Dump the contents of an ID to stderr for debugging. + * Purpose: Dump the contents of an ID to stderr for debugging. * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Robb Matzke - * Friday, February 19, 1999 + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ static herr_t H5I__debug_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) { - H5I_id_info_t *item = (H5I_id_info_t *)_item; /* Pointer to the ID node */ - H5I_type_t type = *(H5I_type_t *)_udata; /* User data */ - H5G_name_t *path = NULL; - int ret_value = H5_ITER_CONT; /* Return value */ + H5I_id_info_t *item = (H5I_id_info_t *)_item; /* Pointer to the ID node */ + H5I_type_t type = *(H5I_type_t *)_udata; /* User data */ + H5G_name_t *path = NULL; FUNC_ENTER_STATIC_NOERR - fprintf(stderr, " id = %lu\n", (unsigned long)(item->id)); - fprintf(stderr, " count = %u\n", item->count); - fprintf(stderr, " obj = 0x%08lx\n", (unsigned long)(item->obj_ptr)); + HDfprintf(stderr, " id = %lu\n", (unsigned long)(item->id)); + HDfprintf(stderr, " count = %u\n", item->count); + HDfprintf(stderr, " obj = 0x%08lx\n", (unsigned long)(item->obj_ptr)); /* Get the group location, so we get get the name */ - switch(type) { + switch (type) { case H5I_GROUP: path = H5G_nameof((H5G_t*)item->obj_ptr); break; @@ -2246,31 +2148,40 @@ H5I__debug_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) path = H5T_nameof((H5T_t*)item->obj_ptr); break; + case H5I_UNINIT: + case H5I_BADID: + case H5I_FILE: + case H5I_DATASPACE: + case H5I_ATTR: + case H5I_REFERENCE: + case H5I_VFL: + case H5I_GENPROP_CLS: + case H5I_GENPROP_LST: + case H5I_ERROR_CLASS: + case H5I_ERROR_MSG: + case H5I_ERROR_STACK: + case H5I_NTYPES: default: break; /* Other types of IDs are not stored in files */ - } /* end switch*/ + } - if(path) { - if(path->user_path_r) - fprintf(stderr, " user_path = %s\n", H5RS_get_str(path->user_path_r)); - if(path->full_path_r) - fprintf(stderr, " full_path = %s\n", H5RS_get_str(path->full_path_r)); - } /* end if */ + if (path) { + if (path->user_path_r) + HDfprintf(stderr, " user_path = %s\n", H5RS_get_str(path->user_path_r)); + if (path->full_path_r) + HDfprintf(stderr, " full_path = %s\n", H5RS_get_str(path->full_path_r)); + } FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5I__debug_cb() */ /*------------------------------------------------------------------------- - * Function: H5I__debug - * - * Purpose: Dump the contents of a type to stderr for debugging. + * Function: H5I__debug * - * Return: Success: Non-negative - * Failure: Negative + * Purpose: Dump the contents of a type to stderr for debugging. * - * Programmer: Robb Matzke - * Friday, February 19, 1999 + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -2281,17 +2192,17 @@ H5I__debug(H5I_type_t type) FUNC_ENTER_STATIC_NOERR - fprintf(stderr, "Dumping ID type %d\n", (int)type); + HDfprintf(stderr, "Dumping ID type %d\n", (int)type); type_ptr = H5I_id_type_list_g[type]; /* Header */ - fprintf(stderr, " init_count = %u\n", type_ptr->init_count); - fprintf(stderr, " reserved = %u\n", type_ptr->cls->reserved); - fprintf(stderr, " id_count = %llu\n", (unsigned long long)type_ptr->id_count); - fprintf(stderr, " nextid = %llu\n", (unsigned long long)type_ptr->nextid); + HDfprintf(stderr, " init_count = %u\n", type_ptr->init_count); + HDfprintf(stderr, " reserved = %u\n", type_ptr->cls->reserved); + HDfprintf(stderr, " id_count = %llu\n", (unsigned long long)type_ptr->id_count); + HDfprintf(stderr, " nextid = %llu\n", (unsigned long long)type_ptr->nextid); /* List */ - fprintf(stderr, " List:\n"); + HDfprintf(stderr, " List:\n"); H5SL_iterate(type_ptr->ids, H5I__debug_cb, &type); FUNC_LEAVE_NOAPI(SUCCEED) @@ -50,18 +50,6 @@ typedef struct { hid_t dxpl_id; /* DXPL to use in callback */ } H5L_trav_gi_t; -/* User data for path traversal routine for getting link info by index */ -typedef struct { - /* In */ - H5_index_t idx_type; /* Index to use */ - H5_iter_order_t order; /* Order to iterate in index */ - hsize_t n; /* Offset of link within index */ - hid_t dxpl_id; /* DXPL to use in callback */ - - /* Out */ - H5L_info_t *linfo; /* Buffer to return to user */ -} H5L_trav_gibi_t; - /* User data for path traversal callback to creating a link */ typedef struct { H5F_t *file; /* Pointer to the file */ @@ -108,47 +96,11 @@ typedef struct { void *buf; /* User buffer */ } H5L_trav_gv_t; -/* User data for path traversal routine for getting link value by index */ -typedef struct { - /* In */ - H5_index_t idx_type; /* Index to use */ - H5_iter_order_t order; /* Order to iterate in index */ - hsize_t n; /* Offset of link within index */ - hid_t dxpl_id; /* DXPL to use in callback */ - size_t size; /* Size of user buffer */ - - /* Out */ - void *buf; /* User buffer */ -} H5L_trav_gvbi_t; - /* User data for path traversal routine for removing link */ typedef struct { hid_t dxpl_id; /* DXPL to use in callback */ } H5L_trav_rm_t; -/* User data for path traversal routine for removing link by index */ -typedef struct { - /* In */ - H5_index_t idx_type; /* Index to use */ - H5_iter_order_t order; /* Order to iterate in index */ - hsize_t n; /* Offset of link within index */ - hid_t dxpl_id; /* DXPL to use in callback */ -} H5L_trav_rmbi_t; - -/* User data for path traversal routine for getting name by index */ -typedef struct { - /* In */ - H5_index_t idx_type; /* Index to use */ - H5_iter_order_t order; /* Order to iterate in index */ - hsize_t n; /* Offset of link within index */ - size_t size; /* Size of name buffer */ - hid_t dxpl_id; /* DXPL to use in callback */ - - /* Out */ - char *name; /* Buffer to return name to user */ - ssize_t name_len; /* Length of full name */ -} H5L_trav_gnbi_t; - /********************/ /* Local Prototypes */ /********************/ @@ -185,8 +137,6 @@ static herr_t H5L__exists_final_cb(H5G_loc_t *grp_loc/*in*/, const char *name, static herr_t H5L__exists_inter_cb(H5G_loc_t *grp_loc/*in*/, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/); -static htri_t H5L__exists(const H5G_loc_t *loc, const char *name, hid_t lapl_id, - hid_t dxpl_id); static herr_t H5L_get_info_cb(H5G_loc_t *grp_loc/*in*/, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/); @@ -866,17 +816,17 @@ H5Lexists(hid_t loc_id, const char *name, hid_t lapl_id) /* Check arguments */ if(H5G_loc(loc_id, &loc)) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if(!name || !*name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") /* Verify access property list and get correct dxpl */ if(H5P_verify_apl_and_dxpl(&lapl_id, H5P_CLS_LACC, &dxpl_id, loc_id, FALSE) < 0) HGOTO_ERROR(H5E_LINK, H5E_CANTSET, FAIL, "can't set access and transfer property lists") /* Check for the existence of the link */ - if((ret_value = H5L__exists(&loc, name, lapl_id, dxpl_id)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "unable to get link info") + if((ret_value = H5L_exists(&loc, name, lapl_id, dxpl_id)) < 0) + HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "unable to get link info") done: FUNC_LEAVE_API(ret_value) @@ -1181,24 +1131,20 @@ done: /*------------------------------------------------------------------------- - * Function: H5Literate + * Function: H5Literate * - * Purpose: Iterates over links in a group, with user callback routine, + * Purpose: Iterates over links in a group, with user callback routine, * according to the order within an index. * * Same pattern of behavior as H5Giterate. * - * Return: Success: The return value of the first operator that - * returns non-zero, or zero if all members were - * processed with no operator returning non-zero. - * - * Failure: Negative if something goes wrong within the - * library, or the negative value returned by one - * of the operators. - * + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. * - * Programmer: Quincey Koziol - * Thursday, November 16, 2006 + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. * *------------------------------------------------------------------------- */ @@ -1206,25 +1152,25 @@ herr_t H5Literate(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx_p, H5L_iterate_t op, void *op_data) { - H5I_type_t id_type; /* Type of ID */ - H5G_link_iterate_t lnk_op; /* Link operator */ - hsize_t last_lnk; /* Index of last object looked at */ - hsize_t idx; /* Internal location to hold index */ - herr_t ret_value; /* Return value */ + H5I_type_t id_type; /* Type of ID */ + H5G_link_iterate_t lnk_op; /* Link operator */ + hsize_t last_lnk; /* Index of last object looked at */ + hsize_t idx; /* Internal location to hold index */ + herr_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE6("e", "iIiIo*hx*x", grp_id, idx_type, order, idx_p, op, op_data); /* Check arguments */ id_type = H5I_get_type(grp_id); - if(!(H5I_GROUP == id_type || H5I_FILE == id_type)) + if (!(H5I_GROUP == id_type || H5I_FILE == id_type)) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid argument") - if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") - if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") - if(!op) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no operator specified") + if (idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if (order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if (!op) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no operator specified") /* Set up iteration beginning/end info */ idx = (idx_p == NULL ? 0 : *idx_p); @@ -1235,8 +1181,8 @@ H5Literate(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, lnk_op.op_func.op_new = op; /* Iterate over the links */ - if((ret_value = H5G_iterate(grp_id, ".", idx_type, order, idx, &last_lnk, &lnk_op, op_data, H5P_DEFAULT, H5AC_ind_read_dxpl_id)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_BADITER, FAIL, "link iteration failed") + if ((ret_value = H5G_iterate(grp_id, ".", idx_type, order, idx, &last_lnk, &lnk_op, op_data, H5P_DEFAULT, H5AC_ind_read_dxpl_id)) < 0) + HGOTO_ERROR(H5E_SYM, H5E_BADITER, FAIL, "link iteration failed") /* Set the index we stopped at */ if(idx_p) @@ -2930,7 +2876,7 @@ done: /*------------------------------------------------------------------------- - * Function: H5L__exists + * Function: H5L_exists * * Purpose: Returns whether a link exists in a group * @@ -2944,13 +2890,13 @@ done: * *------------------------------------------------------------------------- */ -static htri_t -H5L__exists(const H5G_loc_t *loc, const char *name, hid_t lapl_id, hid_t dxpl_id) +htri_t +H5L_exists(const H5G_loc_t *loc, const char *name, hid_t lapl_id, hid_t dxpl_id) { H5L_trav_le_t udata; /* User data for traversal */ htri_t ret_value = FAIL; /* Return value */ - FUNC_ENTER_STATIC + FUNC_ENTER_NOAPI(FAIL) /* A path of "/" will always exist in a file */ if(0 == HDstrcmp(name, "/")) @@ -2966,7 +2912,7 @@ H5L__exists(const H5G_loc_t *loc, const char *name, hid_t lapl_id, hid_t dxpl_id done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5L__exists() */ +} /* H5L_exists() */ /*------------------------------------------------------------------------- diff --git a/src/H5Lprivate.h b/src/H5Lprivate.h index dd243a6..8a2bd34 100644 --- a/src/H5Lprivate.h +++ b/src/H5Lprivate.h @@ -48,6 +48,54 @@ /* Library Private Typedefs */ /****************************/ +/* User data for path traversal routine for getting link value by index */ +typedef struct { + /* In */ + H5_index_t idx_type; /* Index to use */ + H5_iter_order_t order; /* Order to iterate in index */ + hsize_t n; /* Offset of link within index */ + hid_t dxpl_id; /* DXPL to use in callback */ + size_t size; /* Size of user buffer */ + + /* Out */ + void *buf; /* User buffer */ +} H5L_trav_gvbi_t; + +/* User data for path traversal routine for getting link info by index */ +typedef struct { + /* In */ + H5_index_t idx_type; /* Index to use */ + H5_iter_order_t order; /* Order to iterate in index */ + hsize_t n; /* Offset of link within index */ + hid_t dxpl_id; /* DXPL to use in callback */ + + /* Out */ + H5L_info_t *linfo; /* Buffer to return to user */ +} H5L_trav_gibi_t; + +/* User data for path traversal routine for getting name by index */ +typedef struct { + /* In */ + H5_index_t idx_type; /* Index to use */ + H5_iter_order_t order; /* Order to iterate in index */ + hsize_t n; /* Offset of link within index */ + size_t size; /* Size of name buffer */ + hid_t dxpl_id; /* DXPL to use in callback */ + + /* Out */ + char *name; /* Buffer to return name to user */ + ssize_t name_len; /* Length of full name */ +} H5L_trav_gnbi_t; + +/* User data for path traversal routine for removing link by index */ +typedef struct { + /* In */ + H5_index_t idx_type; /* Index to use */ + H5_iter_order_t order; /* Order to iterate in index */ + hsize_t n; /* Offset of link within index */ + hid_t dxpl_id; /* DXPL to use in callback */ +} H5L_trav_rmbi_t; + /* Structure for external link traversal callback property */ typedef struct H5L_elink_cb_t { H5L_elink_traverse_t func; @@ -81,6 +129,7 @@ H5_DLL herr_t H5L_move(H5G_loc_t *src_loc, const char *src_name, hid_t lcpl_id, hid_t lapl_id, hid_t dxpl_id); H5_DLL htri_t H5L_exists_tolerant(const H5G_loc_t *loc, const char *name, hid_t lapl_id, hid_t dxpl_id); +H5_DLL htri_t H5L_exists(const H5G_loc_t *loc, const char *name, hid_t lapl_id, hid_t dxpl_id); H5_DLL herr_t H5L_get_info(const H5G_loc_t *loc, const char *name, H5L_info_t *linkbuf/*out*/, hid_t lapl_id, hid_t dxpl_id); H5_DLL herr_t H5L_delete(H5G_loc_t *loc, const char *name, hid_t lapl_id, diff --git a/src/H5Oflush.c b/src/H5Oflush.c index 9764f56..b1592dd 100644 --- a/src/H5Oflush.c +++ b/src/H5Oflush.c @@ -405,7 +405,7 @@ H5O_refresh_metadata_reopen(hid_t oid, H5G_loc_t *obj_loc, hid_t dxpl_id, hbool_ case H5I_ERROR_STACK: case H5I_NTYPES: default: - HGOTO_ERROR(H5E_ARGS, H5E_CANTRELEASE, FAIL, "not a valid file object ID (dataset, group, or datatype)") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a valid file object ID (dataset, group, or datatype)") break; } /* end switch */ diff --git a/src/H5Olayout.c b/src/H5Olayout.c index 838a80f..1a21926 100644 --- a/src/H5Olayout.c +++ b/src/H5Olayout.c @@ -553,6 +553,7 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, uint8_t *heap_block = NULL; size_t *str_size = NULL; unsigned u; + unsigned saved_latest_flags = H5F_GET_LATEST_FLAGS(f); herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -680,6 +681,7 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, /* Note that we assume here that the contents of the heap block * cannot change! If this ever stops being the case we must change * this code to allow overwrites of the heap block. -NAF */ + if((mesg->storage.u.virt.serial_list_hobjid.addr == HADDR_UNDEF) && (mesg->storage.u.virt.list_nused > 0)) { uint8_t *heap_block_p; @@ -689,6 +691,8 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, uint32_t chksum; size_t i; + H5F_SET_LATEST_FLAGS(f, H5F_LATEST_ALL_FLAGS); + /* Allocate array for caching results of strlen */ if(NULL == (str_size = (size_t *)H5MM_malloc(2 * mesg->storage.u.virt.list_nused *sizeof(size_t)))) HGOTO_ERROR(H5E_OHDR, H5E_RESOURCE, FAIL, "unable to allocate string length array") @@ -715,12 +719,12 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, block_size += str_size[(2 * i) + 1]; /* Source selection */ - if((select_serial_size = H5S_SELECT_SERIAL_SIZE(mesg->storage.u.virt.list[i].source_select)) < 0) + if((select_serial_size = H5S_SELECT_SERIAL_SIZE(mesg->storage.u.virt.list[i].source_select, f)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTENCODE, FAIL, "unable to check dataspace selection size") block_size += (size_t)select_serial_size; /* Virtual dataset selection */ - if((select_serial_size = H5S_SELECT_SERIAL_SIZE(mesg->storage.u.virt.list[i].source_dset.virtual_select)) < 0) + if((select_serial_size = H5S_SELECT_SERIAL_SIZE(mesg->storage.u.virt.list[i].source_dset.virtual_select, f)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTENCODE, FAIL, "unable to check dataspace selection size") block_size += (size_t)select_serial_size; } /* end for */ @@ -755,11 +759,11 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, heap_block_p += str_size[(2 * i) + 1]; /* Source selection */ - if(H5S_SELECT_SERIALIZE(mesg->storage.u.virt.list[i].source_select, &heap_block_p) < 0) + if(H5S_SELECT_SERIALIZE(mesg->storage.u.virt.list[i].source_select, &heap_block_p, f) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to serialize source selection") /* Virtual selection */ - if(H5S_SELECT_SERIALIZE(mesg->storage.u.virt.list[i].source_dset.virtual_select, &heap_block_p) < 0) + if(H5S_SELECT_SERIALIZE(mesg->storage.u.virt.list[i].source_dset.virtual_select, &heap_block_p, f) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to serialize virtual selection") } /* end for */ @@ -785,6 +789,8 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, } /* end switch */ done: + H5F_SET_LATEST_FLAGS(f, saved_latest_flags); + heap_block = (uint8_t *)H5MM_xfree(heap_block); str_size = (size_t *)H5MM_xfree(str_size); diff --git a/src/H5Opkg.h b/src/H5Opkg.h index b0c67d1..109d273 100644 --- a/src/H5Opkg.h +++ b/src/H5Opkg.h @@ -247,20 +247,20 @@ struct H5O_msg_class_t { }; struct H5O_mesg_t { - const H5O_msg_class_t *type; /*type of message */ - hbool_t dirty; /*raw out of date wrt native */ - uint8_t flags; /*message flags */ - H5O_msg_crt_idx_t crt_idx; /*message creation index */ - unsigned chunkno; /*chunk number for this mesg */ - void *native; /*native format message */ - uint8_t *raw; /*ptr to raw data */ - size_t raw_size; /*size with alignment */ + const H5O_msg_class_t *type; /* type of message */ + hbool_t dirty; /* raw out of date wrt native */ + uint8_t flags; /* message flags */ + H5O_msg_crt_idx_t crt_idx; /* message creation index */ + unsigned chunkno; /* chunk number for this mesg */ + void *native; /* native format message */ + uint8_t *raw; /* pointer to raw data */ + size_t raw_size; /* size with alignment */ }; /* Struct for storing information about "best" message to move to new chunk */ typedef struct H5O_msg_alloc_info_t { int msgno; /* Index in message array */ - unsigned id; /* Message type ID on disk */ + unsigned id; /* Message type ID on disk */ unsigned chunkno; /* Index in chunk array */ size_t gap_size; /* Size of any "gap" in the chunk immediately after message */ size_t null_size; /* Size of any null message in the chunk immediately after message */ diff --git a/src/H5Oprivate.h b/src/H5Oprivate.h index e87c148..4b74d8f 100644 --- a/src/H5Oprivate.h +++ b/src/H5Oprivate.h @@ -26,6 +26,7 @@ /* Early typedefs to avoid circular dependencies */ typedef struct H5O_t H5O_t; +typedef struct H5O_fill_t H5O_fill_t; /* Include the public header file for this API */ #include "H5Opublic.h" /* Object header functions */ @@ -308,7 +309,7 @@ typedef struct H5O_linfo_t { * message if it's shared. */ -typedef struct H5O_fill_t { +struct H5O_fill_t { H5O_shared_t sh_loc; /* Shared message info (must be first) */ unsigned version; /* Encoding version number */ @@ -318,7 +319,7 @@ typedef struct H5O_fill_t { H5D_alloc_time_t alloc_time; /* time to allocate space */ H5D_fill_time_t fill_time; /* time to write fill value */ hbool_t fill_defined; /* whether fill value is defined */ -} H5O_fill_t; +}; /* * Link message. @@ -26,10 +26,11 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Iprivate.h" /* IDs */ -#include "H5Ppkg.h" /* Property lists */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Ppkg.h" /* Property lists */ +#include "H5Fprivate.h" /* Files */ /****************/ /* Local Macros */ @@ -839,6 +840,9 @@ herr_t H5Pencode(hid_t plist_id, void *buf, size_t *nalloc) { H5P_genplist_t *plist; /* Property list to query */ + H5P_genplist_t *fapl_plist; + hid_t new_fapl_id; + hbool_t latest_format = TRUE; herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_API(FAIL) @@ -848,8 +852,19 @@ H5Pencode(hid_t plist_id, void *buf, size_t *nalloc) if(NULL == (plist = (H5P_genplist_t *)H5I_object_verify(plist_id, H5I_GENPROP_LST))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list"); + /* Make a copy of the default file access property list */ + if(NULL == (fapl_plist = (H5P_genplist_t *)H5I_object(H5P_LST_FILE_ACCESS_ID_g))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") + if((new_fapl_id = H5P_copy_plist(fapl_plist, FALSE)) < 0) + HGOTO_ERROR(H5E_INTERNAL, H5E_CANTINIT, FAIL, "can't copy file access property list") + + /* Set latest format in fapl_plist */ + /* This will eventually be used by VDS to encode datasets via H5P__dcrt_layout_enc() */ + if(H5P_set(fapl_plist, H5F_ACS_LATEST_FORMAT_NAME, &latest_format) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set 'latest format' flag") + /* Call the internal encode routine */ - if((ret_value = H5P__encode(plist, TRUE, buf, nalloc)) < 0) + if((ret_value = H5P__encode(plist, TRUE, buf, nalloc, new_fapl_id)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to encode property list"); done: diff --git a/src/H5Pdapl.c b/src/H5Pdapl.c index 494de3e..b72fa58 100644 --- a/src/H5Pdapl.c +++ b/src/H5Pdapl.c @@ -110,13 +110,13 @@ static herr_t H5P__encode_chunk_cache_nbytes(const void *value, void **_pp, static herr_t H5P__decode_chunk_cache_nbytes(const void **_pp, void *_value); /* Property list callbacks */ -static herr_t H5P__dacc_vds_view_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dacc_vds_view_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dacc_vds_view_dec(const void **pp, void *value); /* Property list callbacks */ static herr_t H5P__dapl_efile_pref_set(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__dapl_efile_pref_get(hid_t prop_id, const char* name, size_t size, void* value); -static herr_t H5P__dapl_efile_pref_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__dapl_efile_pref_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__dapl_efile_pref_dec(const void **_pp, void *value); static herr_t H5P__dapl_efile_pref_del(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__dapl_efile_pref_copy(const char* name, size_t size, void* value); @@ -288,7 +288,7 @@ H5P__dapl_efile_pref_get(hid_t H5_ATTR_UNUSED prop_id, const char H5_ATTR_UNUSED *------------------------------------------------------------------------- */ static herr_t -H5P__dapl_efile_pref_enc(const void *value, void **_pp, size_t *size) +H5P__dapl_efile_pref_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const char *efile_pref = *(const char * const *)value; uint8_t **pp = (uint8_t **)_pp; @@ -883,7 +883,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dacc_vds_view_enc(const void *value, void **_pp, size_t *size) +H5P__dacc_vds_view_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5D_vds_view_t *view = (const H5D_vds_view_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c index 3b4c159..a000351 100644 --- a/src/H5Pdcpl.c +++ b/src/H5Pdcpl.c @@ -146,7 +146,7 @@ static herr_t H5P__dcrt_reg_prop(H5P_genclass_t *pclass); /* Property callbacks */ static herr_t H5P__dcrt_layout_set(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__dcrt_layout_get(hid_t prop_id, const char *name, size_t size, void *value); -static herr_t H5P__dcrt_layout_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dcrt_layout_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dcrt_layout_dec(const void **pp, void *value); static herr_t H5P__dcrt_layout_del(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__dcrt_layout_copy(const char *name, size_t size, void *value); @@ -154,14 +154,14 @@ static int H5P__dcrt_layout_cmp(const void *value1, const void *value2, size_t s static herr_t H5P__dcrt_layout_close(const char *name, size_t size, void *value); static herr_t H5P__dcrt_fill_value_set(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__dcrt_fill_value_get(hid_t prop_id, const char *name, size_t size, void *value); -static herr_t H5P__dcrt_fill_value_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dcrt_fill_value_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dcrt_fill_value_dec(const void **pp, void *value); static herr_t H5P__dcrt_fill_value_del(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__dcrt_fill_value_copy(const char *name, size_t size, void *value); static herr_t H5P__dcrt_fill_value_close(const char *name, size_t size, void *value); static herr_t H5P__dcrt_ext_file_list_set(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__dcrt_ext_file_list_get(hid_t prop_id, const char *name, size_t size, void *value); -static herr_t H5P__dcrt_ext_file_list_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dcrt_ext_file_list_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dcrt_ext_file_list_dec(const void **pp, void *value); static herr_t H5P__dcrt_ext_file_list_del(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__dcrt_ext_file_list_copy(const char *name, size_t size, void *value); @@ -366,9 +366,10 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size) +H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size, void *_udata) { const H5O_layout_t *layout = (const H5O_layout_t *)value; /* Create local aliases for values */ + H5P_enc_cb_info_t *udata = (H5P_enc_cb_info_t *)_udata; /* User data for encode callback */ uint8_t **pp = (uint8_t **)_pp; uint8_t *tmp_p; size_t tmp_size; @@ -426,14 +427,14 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size) * list before we get here. */ tmp_size = (size_t)-1; tmp_p = *pp; - if(H5S_encode(layout->storage.u.virt.list[u].source_select, pp, &tmp_size) < 0) + if(H5S_encode(layout->storage.u.virt.list[u].source_select, pp, &tmp_size, udata->fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize source selection") *size += (size_t)(*pp - tmp_p); /* Virtual dataset selection. Same notes as above apply. */ tmp_size = (size_t)-1; tmp_p = *pp; - if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, pp, &tmp_size) < 0) + if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, pp, &tmp_size, udata->fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize virtual selection") *size += (size_t)(*pp - tmp_p); } /* end for */ @@ -466,14 +467,14 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size) /* Source selection */ tmp_size = (size_t)0; tmp_p = NULL; - if(H5S_encode(layout->storage.u.virt.list[u].source_select, &tmp_p, &tmp_size) < 0) + if(H5S_encode(layout->storage.u.virt.list[u].source_select, &tmp_p, &tmp_size, udata->fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize source selection") *size += tmp_size; /* Virtual dataset selection */ tmp_size = (size_t)0; tmp_p = NULL; - if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, &tmp_p, &tmp_size) < 0) + if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, &tmp_p, &tmp_size, udata->fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize virtual selection") *size += tmp_size; } /* end for */ @@ -979,7 +980,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dcrt_fill_value_enc(const void *value, void **_pp, size_t *size) +H5P__dcrt_fill_value_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5O_fill_t *fill = (const H5O_fill_t *)value; /* Create local aliases for values */ size_t dt_size = 0; /* Size of encoded datatype */ @@ -1382,7 +1383,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dcrt_ext_file_list_enc(const void *value, void **_pp, size_t *size) +H5P__dcrt_ext_file_list_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5O_efl_t *efl = (const H5O_efl_t *)value; /* Create local aliases for values */ size_t len = 0; /* String length of slot name */ diff --git a/src/H5Pdxpl.c b/src/H5Pdxpl.c index 3c53c15..c815542 100644 --- a/src/H5Pdxpl.c +++ b/src/H5Pdxpl.c @@ -212,21 +212,21 @@ static herr_t H5P__dxfr_reg_prop(H5P_genclass_t *pclass); /* Property list callbacks */ -static herr_t H5P__dxfr_bkgr_buf_type_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_bkgr_buf_type_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_bkgr_buf_type_dec(const void **pp, void *value); -static herr_t H5P__dxfr_btree_split_ratio_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_btree_split_ratio_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_btree_split_ratio_dec(const void **pp, void *value); -static herr_t H5P__dxfr_io_xfer_mode_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_io_xfer_mode_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_io_xfer_mode_dec(const void **pp, void *value); -static herr_t H5P__dxfr_mpio_collective_opt_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_mpio_collective_opt_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_mpio_collective_opt_dec(const void **pp, void *value); -static herr_t H5P__dxfr_mpio_chunk_opt_hard_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_mpio_chunk_opt_hard_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_mpio_chunk_opt_hard_dec(const void **pp, void *value); -static herr_t H5P__dxfr_edc_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_edc_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_edc_dec(const void **pp, void *value); static herr_t H5P__dxfr_xform_set(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__dxfr_xform_get(hid_t prop_id, const char* name, size_t size, void* value); -static herr_t H5P__dxfr_xform_enc(const void *value, void **pp, size_t *size); +static herr_t H5P__dxfr_xform_enc(const void *value, void **pp, size_t *size, void *udata); static herr_t H5P__dxfr_xform_dec(const void **pp, void *value); static herr_t H5P__dxfr_xform_del(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__dxfr_xform_copy(const char* name, size_t size, void* value); @@ -559,7 +559,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_bkgr_buf_type_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_bkgr_buf_type_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5T_bkg_t *bkgr_buf_type = (const H5T_bkg_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -632,7 +632,7 @@ H5P__dxfr_bkgr_buf_type_dec(const void **_pp, void *_value) *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_btree_split_ratio_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_btree_split_ratio_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const double *btree_split_ratio = (const double *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -793,7 +793,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_xform_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_xform_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5Z_data_xform_t *data_xform_prop = *(const H5Z_data_xform_t * const *)value; /* Create local alias for values */ const char *pexp = NULL; /* Pointer to transform expression */ @@ -1881,7 +1881,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_io_xfer_mode_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_io_xfer_mode_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5FD_mpio_xfer_t *xfer_mode = (const H5FD_mpio_xfer_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -1954,7 +1954,7 @@ H5P__dxfr_io_xfer_mode_dec(const void **_pp, void *_value) *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_mpio_collective_opt_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_mpio_collective_opt_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5FD_mpio_collective_opt_t *coll_opt = (const H5FD_mpio_collective_opt_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -2027,7 +2027,7 @@ H5P__dxfr_mpio_collective_opt_dec(const void **_pp, void *_value) *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_mpio_chunk_opt_hard_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_mpio_chunk_opt_hard_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5FD_mpio_chunk_opt_t *chunk_opt = (const H5FD_mpio_chunk_opt_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -2212,7 +2212,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__dxfr_edc_enc(const void *value, void **_pp, size_t *size) +H5P__dxfr_edc_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5Z_EDC_t *check = (const H5Z_EDC_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Pencdec.c b/src/H5Pencdec.c index 73c48d7..3332098 100644 --- a/src/H5Pencdec.c +++ b/src/H5Pencdec.c @@ -49,9 +49,10 @@ /* Typedef for iterator when encoding a property list */ typedef struct { - hbool_t encode; /* Whether the property list should be encoded */ - size_t *enc_size_ptr; /* Pointer to size of encoded buffer */ - void **pp; /* Pointer to encoding buffer pointer */ + hbool_t encode; /* Whether the property list should be encoded */ + size_t *enc_size_ptr; /* Pointer to size of encoded buffer */ + void **pp; /* Pointer to encoding buffer pointer */ + hid_t fapl_id; /* File access property list */ } H5P_enc_iter_ud_t; @@ -90,7 +91,7 @@ typedef struct { *------------------------------------------------------------------------- */ herr_t -H5P__encode_size_t(const void *value, void **_pp, size_t *size) +H5P__encode_size_t(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { uint64_t enc_value = (uint64_t)*(const size_t *)value; /* Property value to encode */ uint8_t **pp = (uint8_t **)_pp; @@ -132,7 +133,7 @@ H5P__encode_size_t(const void *value, void **_pp, size_t *size) *------------------------------------------------------------------------- */ herr_t -H5P__encode_hsize_t(const void *value, void **_pp, size_t *size) +H5P__encode_hsize_t(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { uint64_t enc_value = (uint64_t)*(const hsize_t *)value; /* Property value to encode */ unsigned enc_size = H5VM_limit_enc_size(enc_value); /* Size of encoded property */ @@ -173,7 +174,7 @@ H5P__encode_hsize_t(const void *value, void **_pp, size_t *size) *------------------------------------------------------------------------- */ herr_t -H5P__encode_unsigned(const void *value, void **_pp, size_t *size) +H5P__encode_unsigned(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { uint8_t **pp = (uint8_t **)_pp; @@ -212,7 +213,7 @@ H5P__encode_unsigned(const void *value, void **_pp, size_t *size) *------------------------------------------------------------------------- */ herr_t -H5P__encode_uint8_t(const void *value, void **_pp, size_t *size) +H5P__encode_uint8_t(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { uint8_t **pp = (uint8_t **)_pp; @@ -248,7 +249,7 @@ H5P__encode_uint8_t(const void *value, void **_pp, size_t *size) *------------------------------------------------------------------------- */ herr_t -H5P__encode_hbool_t(const void *value, void **_pp, size_t *size) +H5P__encode_hbool_t(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { uint8_t **pp = (uint8_t **)_pp; @@ -283,7 +284,7 @@ H5P__encode_hbool_t(const void *value, void **_pp, size_t *size) *------------------------------------------------------------------------- */ herr_t -H5P__encode_double(const void *value, void **_pp, size_t *size) +H5P__encode_double(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { uint8_t **pp = (uint8_t **)_pp; @@ -332,7 +333,8 @@ static int H5P__encode_cb(H5P_genprop_t *prop, void *_udata) { H5P_enc_iter_ud_t *udata = (H5P_enc_iter_ud_t *)_udata; /* Pointer to user data */ - int ret_value = H5_ITER_CONT; /* Return value */ + H5P_enc_cb_info_t cb_udata; /* User data for property iteration callback */ + int ret_value = H5_ITER_CONT; /* Return value */ FUNC_ENTER_STATIC @@ -355,7 +357,8 @@ H5P__encode_cb(H5P_genprop_t *prop, void *_udata) /* Encode (or not, if *(udata->pp) is NULL) the property value */ prop_value_len = 0; - if((prop->encode)(prop->value, udata->pp, &prop_value_len) < 0) + cb_udata.fapl_id = udata->fapl_id; + if((prop->encode)(prop->value, udata->pp, &prop_value_len, &cb_udata) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, H5_ITER_ERROR, "property encoding routine failed") *(udata->enc_size_ptr) += prop_value_len; } /* end if */ @@ -390,7 +393,7 @@ done: --------------------------------------------------------------------------*/ herr_t H5P__encode(const H5P_genplist_t *plist, hbool_t enc_all_prop, void *buf, - size_t *nalloc) + size_t *nalloc, hid_t fapl_id) { H5P_enc_iter_ud_t udata; /* User data for property iteration callback */ uint8_t *p = (uint8_t *)buf; /* Temporary pointer to encoding buffer */ @@ -425,6 +428,7 @@ H5P__encode(const H5P_genplist_t *plist, hbool_t enc_all_prop, void *buf, udata.encode = encode; udata.enc_size_ptr = &encode_size; udata.pp = (void **)&p; + udata.fapl_id = fapl_id; /* Iterate over all properties in property list, encoding them */ idx = 0; diff --git a/src/H5Pfapl.c b/src/H5Pfapl.c index 1b0a4b9..a60817d 100644 --- a/src/H5Pfapl.c +++ b/src/H5Pfapl.c @@ -14,8 +14,6 @@ /*------------------------------------------------------------------------- * * Created: H5Pfapl.c - * February 26 1998 - * Robb Matzke <matzke@llnl.gov> * * Purpose: File access property list class routines * @@ -32,21 +30,21 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5ACprivate.h" /* Metadata cache */ -#include "H5Dprivate.h" /* Datasets */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fprivate.h" /* Files */ -#include "H5FDprivate.h" /* File drivers */ -#include "H5Iprivate.h" /* IDs */ +#include "H5private.h" /* Generic Functions */ +#include "H5ACprivate.h" /* Metadata cache */ +#include "H5Dprivate.h" /* Datasets */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fprivate.h" /* Files */ +#include "H5FDprivate.h" /* File drivers */ +#include "H5Iprivate.h" /* IDs */ #include "H5MMprivate.h" /* Memory Management */ -#include "H5Ppkg.h" /* Property lists */ +#include "H5Ppkg.h" /* Property lists */ /* Includes needed to set as default file driver */ -#include "H5FDsec2.h" /* Posix unbuffered I/O file driver */ -#include "H5FDstdio.h" /* Standard C buffered I/O */ +#include "H5FDsec2.h" /* Posix unbuffered I/O file driver */ +#include "H5FDstdio.h" /* Standard C buffered I/O */ #ifdef H5_HAVE_WINDOWS -#include "H5FDwindows.h" /* Windows buffered I/O */ +#include "H5FDwindows.h" /* Win32 I/O */ #endif @@ -283,16 +281,16 @@ static int H5P__facc_file_image_info_cmp(const void *value1, const void *value2, static herr_t H5P__facc_file_image_info_close(const char *name, size_t size, void *value); /* encode & decode callbacks */ -static herr_t H5P__facc_cache_config_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__facc_cache_config_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__facc_cache_config_dec(const void **_pp, void *value); static int H5P__facc_cache_config_cmp(const void *value1, const void *value2, size_t size); -static herr_t H5P__facc_fclose_degree_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__facc_fclose_degree_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__facc_fclose_degree_dec(const void **pp, void *value); -static herr_t H5P__facc_multi_type_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__facc_multi_type_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__facc_multi_type_dec(const void **_pp, void *value); /* Metadata cache log location property callbacks */ -static herr_t H5P_facc_mdc_log_location_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P_facc_mdc_log_location_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P_facc_mdc_log_location_dec(const void **_pp, void *value); static herr_t H5P_facc_mdc_log_location_del(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P_facc_mdc_log_location_copy(const char *name, size_t size, void *value); @@ -301,7 +299,7 @@ static herr_t H5P_facc_mdc_log_location_close(const char *name, size_t size, voi /* Metadata cache image property callbacks */ static int H5P__facc_cache_image_config_cmp(const void *_config1, const void *_config2, size_t H5_ATTR_UNUSED size); -static herr_t H5P__facc_cache_image_config_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__facc_cache_image_config_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__facc_cache_image_config_dec(const void **_pp, void *_value); @@ -391,8 +389,8 @@ static const unsigned H5F_def_page_buf_min_raw_perc_g = H5F_ACS_PAGE_BUFFER_MIN_ static herr_t H5P__facc_reg_prop(H5P_genclass_t *pclass) { - const H5FD_driver_prop_t def_driver_prop = H5F_ACS_FILE_DRV_DEF; /* Default VFL driver ID & info (initialized from a variable) */ - herr_t ret_value = SUCCEED; /* Return value */ + const H5FD_driver_prop_t def_driver_prop = H5F_ACS_FILE_DRV_DEF; /* Default VFL driver ID & info (initialized from a variable) */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -2958,7 +2956,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__facc_cache_image_config_enc(const void *value, void **_pp, size_t *size) +H5P__facc_cache_image_config_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5AC_cache_image_config_t *config = (const H5AC_cache_image_config_t *)value; /* Create local aliases for value */ uint8_t **pp = (uint8_t **)_pp; @@ -3384,7 +3382,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__facc_cache_config_enc(const void *value, void **_pp, size_t *size) +H5P__facc_cache_config_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5AC_cache_config_t *config = (const H5AC_cache_config_t *)value; /* Create local aliases for values */ uint8_t **pp = (uint8_t **)_pp; @@ -3664,7 +3662,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__facc_fclose_degree_enc(const void *value, void **_pp, size_t *size) +H5P__facc_fclose_degree_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5F_close_degree_t *fclose_degree = (const H5F_close_degree_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -3737,7 +3735,7 @@ H5P__facc_fclose_degree_dec(const void **_pp, void *_value) *------------------------------------------------------------------------- */ static herr_t -H5P__facc_multi_type_enc(const void *value, void **_pp, size_t *size) +H5P__facc_multi_type_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5FD_mem_t *type = (const H5FD_mem_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -4166,7 +4164,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P_facc_mdc_log_location_enc(const void *value, void **_pp, size_t *size) +H5P_facc_mdc_log_location_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const char *log_location = *(const char * const *)value; uint8_t **pp = (uint8_t **)_pp; @@ -4466,7 +4464,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5P__encode_coll_md_read_flag_t(const void *value, void **_pp, size_t *size) +H5P__encode_coll_md_read_flag_t(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5P_coll_md_read_flag_t *coll_md_read_flag = (const H5P_coll_md_read_flag_t *)value; uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Pfcpl.c b/src/H5Pfcpl.c index 6b0d2c0..720c526 100644 --- a/src/H5Pfcpl.c +++ b/src/H5Pfcpl.c @@ -132,13 +132,13 @@ static herr_t H5P_fcrt_reg_prop(H5P_genclass_t *pclass); /* property callbacks */ -static herr_t H5P__fcrt_btree_rank_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__fcrt_btree_rank_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__fcrt_btree_rank_dec(const void **_pp, void *value); -static herr_t H5P__fcrt_shmsg_index_types_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__fcrt_shmsg_index_types_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__fcrt_shmsg_index_types_dec(const void **_pp, void *value); -static herr_t H5P__fcrt_shmsg_index_minsize_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__fcrt_shmsg_index_minsize_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__fcrt_shmsg_index_minsize_dec(const void **_pp, void *value); -static herr_t H5P__fcrt_fspace_strategy_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__fcrt_fspace_strategy_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__fcrt_fspace_strategy_dec(const void **_pp, void *_value); @@ -722,7 +722,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__fcrt_btree_rank_enc(const void *value, void **_pp, size_t *size) +H5P__fcrt_btree_rank_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const unsigned *btree_k = (const unsigned *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -1013,7 +1013,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__fcrt_shmsg_index_types_enc(const void *value, void **_pp, size_t *size) +H5P__fcrt_shmsg_index_types_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const unsigned *type_flags = (const unsigned *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -1106,7 +1106,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__fcrt_shmsg_index_minsize_enc(const void *value, void **_pp, size_t *size) +H5P__fcrt_shmsg_index_minsize_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const unsigned *minsizes = (const unsigned *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -1388,7 +1388,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__fcrt_fspace_strategy_enc(const void *value, void **_pp, size_t *size) +H5P__fcrt_fspace_strategy_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5F_fspace_strategy_t *strategy = (const H5F_fspace_strategy_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Pgcpl.c b/src/H5Pgcpl.c index 6f1fab1..a719616 100644 --- a/src/H5Pgcpl.c +++ b/src/H5Pgcpl.c @@ -69,9 +69,9 @@ static herr_t H5P__gcrt_reg_prop(H5P_genclass_t *pclass); /* Property callbacks */ -static herr_t H5P__gcrt_group_info_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__gcrt_group_info_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__gcrt_group_info_dec(const void **_pp, void *value); -static herr_t H5P__gcrt_link_info_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__gcrt_link_info_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__gcrt_link_info_dec(const void **_pp, void *value); @@ -546,7 +546,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__gcrt_group_info_enc(const void *value, void **_pp, size_t *size) +H5P__gcrt_group_info_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5O_ginfo_t *ginfo = (const H5O_ginfo_t *)value; /* Create local aliases for values */ uint8_t **pp = (uint8_t **)_pp; @@ -634,7 +634,7 @@ H5P__gcrt_group_info_dec(const void **_pp, void *_value) *------------------------------------------------------------------------- */ static herr_t -H5P__gcrt_link_info_enc(const void *value, void **_pp, size_t *size) +H5P__gcrt_link_info_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5O_linfo_t *linfo = (const H5O_linfo_t *)value; /* Create local aliases for values */ uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Plapl.c b/src/H5Plapl.c index 18b81ac..4a95991 100644 --- a/src/H5Plapl.c +++ b/src/H5Plapl.c @@ -114,7 +114,7 @@ static herr_t H5P__lacc_reg_prop(H5P_genclass_t *pclass); /* Property list callbacks */ static herr_t H5P__lacc_elink_pref_set(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__lacc_elink_pref_get(hid_t prop_id, const char* name, size_t size, void* value); -static herr_t H5P__lacc_elink_pref_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__lacc_elink_pref_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__lacc_elink_pref_dec(const void **_pp, void *value); static herr_t H5P__lacc_elink_pref_del(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__lacc_elink_pref_copy(const char* name, size_t size, void* value); @@ -122,7 +122,7 @@ static int H5P__lacc_elink_pref_cmp(const void *value1, const void *value2, size static herr_t H5P__lacc_elink_pref_close(const char* name, size_t size, void* value); static herr_t H5P__lacc_elink_fapl_set(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__lacc_elink_fapl_get(hid_t prop_id, const char* name, size_t size, void* value); -static herr_t H5P__lacc_elink_fapl_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__lacc_elink_fapl_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__lacc_elink_fapl_dec(const void **_pp, void *value); static herr_t H5P__lacc_elink_fapl_del(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P__lacc_elink_fapl_copy(const char* name, size_t size, void* value); @@ -338,13 +338,14 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__lacc_elink_fapl_enc(const void *value, void **_pp, size_t *size) +H5P__lacc_elink_fapl_enc(const void *value, void **_pp, size_t *size, void *_udata) { - const hid_t *elink_fapl = (const hid_t *)value; /* Property to encode */ + const hid_t *elink_fapl = (const hid_t *)value; /* Property to encode */ uint8_t **pp = (uint8_t **)_pp; + H5P_enc_cb_info_t *udata = (H5P_enc_cb_info_t *)_udata; /* User data for encode callback */ H5P_genplist_t *fapl_plist; /* Pointer to property list */ hbool_t non_default_fapl = FALSE; /* Whether the FAPL is non-default */ - size_t fapl_size = 0; /* FAPL's encoded size */ + size_t fapl_size = 0; /* FAPL's encoded size */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -364,7 +365,7 @@ H5P__lacc_elink_fapl_enc(const void *value, void **_pp, size_t *size) /* Encode the property list, if non-default */ /* (if *pp == NULL, will only compute the size) */ if(non_default_fapl) { - if(H5P__encode(fapl_plist, TRUE, NULL, &fapl_size) < 0) + if(H5P__encode(fapl_plist, TRUE, NULL, &fapl_size, udata->fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "can't encode property list") if(*pp) { @@ -379,7 +380,7 @@ H5P__lacc_elink_fapl_enc(const void *value, void **_pp, size_t *size) UINT64ENCODE_VAR(*pp, enc_value, enc_size); /* encode the plist */ - if(H5P__encode(fapl_plist, TRUE, *pp, &fapl_size) < 0) + if(H5P__encode(fapl_plist, TRUE, *pp, &fapl_size, udata->fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "can't encode property list") *pp += fapl_size; @@ -688,7 +689,7 @@ H5P__lacc_elink_pref_get(hid_t H5_ATTR_UNUSED prop_id, const char H5_ATTR_UNUSED *------------------------------------------------------------------------- */ static herr_t -H5P__lacc_elink_pref_enc(const void *value, void **_pp, size_t *size) +H5P__lacc_elink_pref_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const char *elink_pref = *(const char * const *)value; uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Pocpl.c b/src/H5Pocpl.c index be41e32..b3c472e 100644 --- a/src/H5Pocpl.c +++ b/src/H5Pocpl.c @@ -90,7 +90,7 @@ static herr_t H5P__ocrt_reg_prop(H5P_genclass_t *pclass); /* Property callbacks */ -static herr_t H5P__ocrt_pipeline_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__ocrt_pipeline_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__ocrt_pipeline_dec(const void **_pp, void *value); static herr_t H5P__ocrt_pipeline_set(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P__ocrt_pipeline_get(hid_t prop_id, const char *name, size_t size, void *value); @@ -1459,7 +1459,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__ocrt_pipeline_enc(const void *value, void **_pp, size_t *size) +H5P__ocrt_pipeline_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5O_pline_t *pline = (const H5O_pline_t *)value; uint8_t **pp = (uint8_t **)_pp; diff --git a/src/H5Ppkg.h b/src/H5Ppkg.h index 13463ae..2cf1342 100644 --- a/src/H5Ppkg.h +++ b/src/H5Ppkg.h @@ -176,21 +176,21 @@ H5_DLL hid_t H5P__new_plist_of_type(H5P_plist_type_t type); /* Encode/decode routines */ H5_DLL herr_t H5P__encode(const H5P_genplist_t *plist, hbool_t enc_all_prop, - void *buf, size_t *nalloc); + void *buf, size_t *nalloc, hid_t fapl_id); H5_DLL hid_t H5P__decode(const void *buf); -H5_DLL herr_t H5P__encode_hsize_t(const void *value, void **_pp, size_t *size); -H5_DLL herr_t H5P__encode_size_t(const void *value, void **_pp, size_t *size); -H5_DLL herr_t H5P__encode_unsigned(const void *value, void **_pp, size_t *size); -H5_DLL herr_t H5P__encode_uint8_t(const void *value, void **_pp, size_t *size); -H5_DLL herr_t H5P__encode_hbool_t(const void *value, void **_pp, size_t *size); -H5_DLL herr_t H5P__encode_double(const void *value, void **_pp, size_t *size); +H5_DLL herr_t H5P__encode_hsize_t(const void *value, void **_pp, size_t *size, void *udata); +H5_DLL herr_t H5P__encode_size_t(const void *value, void **_pp, size_t *size, void *udata); +H5_DLL herr_t H5P__encode_unsigned(const void *value, void **_pp, size_t *size, void *udata); +H5_DLL herr_t H5P__encode_uint8_t(const void *value, void **_pp, size_t *size, void *udata); +H5_DLL herr_t H5P__encode_hbool_t(const void *value, void **_pp, size_t *size, void *udata); +H5_DLL herr_t H5P__encode_double(const void *value, void **_pp, size_t *size, void *udat); H5_DLL herr_t H5P__decode_hsize_t(const void **_pp, void *value); H5_DLL herr_t H5P__decode_size_t(const void **_pp, void *value); H5_DLL herr_t H5P__decode_unsigned(const void **_pp, void *value); H5_DLL herr_t H5P__decode_uint8_t(const void **_pp, void *value); H5_DLL herr_t H5P__decode_hbool_t(const void **_pp, void *value); H5_DLL herr_t H5P__decode_double(const void **_pp, void *value); -H5_DLL herr_t H5P__encode_coll_md_read_flag_t(const void *value, void **_pp, size_t *size); +H5_DLL herr_t H5P__encode_coll_md_read_flag_t(const void *value, void **_pp, size_t *size, void *udata); H5_DLL herr_t H5P__decode_coll_md_read_flag_t(const void **_pp, void *value); /* Private OCPL routines */ diff --git a/src/H5Pprivate.h b/src/H5Pprivate.h index a468464..33847e6 100644 --- a/src/H5Pprivate.h +++ b/src/H5Pprivate.h @@ -17,6 +17,9 @@ #ifndef _H5Pprivate_H #define _H5Pprivate_H +/* Early typedefs to avoid circular dependencies */ +typedef struct H5P_genplist_t H5P_genplist_t; + /* Include package's public header */ #include "H5Ppublic.h" @@ -52,12 +55,7 @@ typedef enum H5P_coll_md_read_flag_t { H5P_USER_TRUE = 1 } H5P_coll_md_read_flag_t; -/* Forward declarations (for prototypes & type definitions) */ -struct H5O_fill_t; -struct H5T_t; - /* Forward declarations for anonymous H5P objects */ -typedef struct H5P_genplist_t H5P_genplist_t; typedef struct H5P_genclass_t H5P_genclass_t; typedef enum H5P_plist_type_t { @@ -86,6 +84,16 @@ typedef enum H5P_plist_type_t { /* Function pointer for library classes with properties to register */ typedef herr_t (*H5P_reg_prop_func_t)(H5P_genclass_t *pclass); +/* Move encode/decode callback typedefs from H5Ppublic.h: not exposed to user */ +/* Add a parameter to encode callback */ +typedef herr_t (*H5P_prp_encode_func_t)(const void *value, void **buf, size_t *size, void *udata); +typedef herr_t (*H5P_prp_decode_func_t)(const void **buf, void *value); + +/* User data passed to encode callback */ +typedef struct H5P_enc_cb_info_t { + hid_t fapl_id; /* File access property list */ +} H5P_enc_cb_info_t; + /* * Each library property list class has a variable of this type that contains * class variables and methods used to initialize the class. @@ -145,6 +153,10 @@ H5_DLLVAR const struct H5P_libclass_t H5P_CLS_FACC[1]; /* File access */ /* Library Private Prototypes */ /******************************/ +/* Forward declaration of structs used below */ +struct H5O_fill_t; +struct H5T_t; + /* Package initialization routine */ H5_DLL herr_t H5P_init(void); diff --git a/src/H5Ppublic.h b/src/H5Ppublic.h index 493a322..3de4343 100644 --- a/src/H5Ppublic.h +++ b/src/H5Ppublic.h @@ -116,8 +116,6 @@ typedef herr_t (*H5P_prp_cb2_t)(hid_t prop_id, const char *name, size_t size, vo typedef H5P_prp_cb1_t H5P_prp_create_func_t; typedef H5P_prp_cb2_t H5P_prp_set_func_t; typedef H5P_prp_cb2_t H5P_prp_get_func_t; -typedef herr_t (*H5P_prp_encode_func_t)(const void *value, void **buf, size_t *size); -typedef herr_t (*H5P_prp_decode_func_t)(const void **buf, void *value); typedef H5P_prp_cb2_t H5P_prp_delete_func_t; typedef H5P_prp_cb1_t H5P_prp_copy_func_t; typedef int (*H5P_prp_compare_func_t)(const void *value1, const void *value2, size_t size); diff --git a/src/H5Pstrcpl.c b/src/H5Pstrcpl.c index fb91356..b84d69b 100644 --- a/src/H5Pstrcpl.c +++ b/src/H5Pstrcpl.c @@ -69,7 +69,7 @@ static herr_t H5P__strcrt_reg_prop(H5P_genclass_t *pclass); /* encode & decode callbacks */ -static herr_t H5P__strcrt_char_encoding_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__strcrt_char_encoding_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__strcrt_char_encoding_dec(const void **_pp, void *value); @@ -227,7 +227,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5P__strcrt_char_encoding_enc(const void *value, void **_pp, size_t *size) +H5P__strcrt_char_encoding_enc(const void *value, void **_pp, size_t *size, void H5_ATTR_UNUSED *udata) { const H5T_cset_t *encoding = (const H5T_cset_t *)value; /* Create local alias for values */ uint8_t **pp = (uint8_t **)_pp; @@ -59,7 +59,6 @@ /* Local Variables */ /*******************/ - /*-------------------------------------------------------------------------- NAME H5Rcreate diff --git a/src/H5Rint.c b/src/H5Rint.c index 716a573..d9669c5 100644 --- a/src/H5Rint.c +++ b/src/H5Rint.c @@ -289,7 +289,7 @@ H5R_create(void *_ref, H5G_loc_t *loc, const char *name, H5R_type_t ref_type, H5 HDmemset(ref, 0, H5R_DSET_REG_REF_BUF_SIZE); /* Get the amount of space required to serialize the selection */ - if ((buf_size = H5S_SELECT_SERIAL_SIZE(space)) < 0) + if ((buf_size = H5S_SELECT_SERIAL_SIZE(space, loc->oloc->file)) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTINIT, FAIL, "Invalid amount of space for serializing selection") /* Increase buffer size to allow for the dataset OID */ @@ -305,7 +305,7 @@ H5R_create(void *_ref, H5G_loc_t *loc, const char *name, H5R_type_t ref_type, H5 H5F_addr_encode(loc->oloc->file, &p, obj_loc.oloc->addr); /* Serialize the selection into heap buffer */ - if (H5S_SELECT_SERIALIZE(space, &p) < 0) + if (H5S_SELECT_SERIALIZE(space, &p, loc->oloc->file) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "Unable to serialize selection") /* Save the serialized buffer for later */ @@ -1547,7 +1547,7 @@ H5Sencode(hid_t obj_id, void *buf, size_t *nalloc) if (NULL == (dspace = (H5S_t *)H5I_object_verify(obj_id, H5I_DATASPACE))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") - if(H5S_encode(dspace, (unsigned char **)&buf, nalloc)<0) + if(H5S_encode(dspace, (unsigned char **)&buf, nalloc, H5P_FILE_ACCESS_DEFAULT)<0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTENCODE, FAIL, "can't encode dataspace") done: @@ -1572,7 +1572,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc) +H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc, hid_t fapl_id) { H5F_t *f = NULL; /* Fake file structure*/ size_t extent_size; /* Size of serialized dataspace extent */ @@ -1583,7 +1583,7 @@ H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc) FUNC_ENTER_NOAPI_NOINIT /* Allocate "fake" file structure */ - if(NULL == (f = H5F_fake_alloc((uint8_t)0))) + if(NULL == (f = H5F_fake_alloc((uint8_t)0, fapl_id))) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate fake file struct") /* Find out the size of buffer needed for extent */ @@ -1591,7 +1591,7 @@ H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc) HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace size") /* Find out the size of buffer needed for selection */ - if((sselect_size = H5S_SELECT_SERIAL_SIZE(obj)) < 0) + if((sselect_size = H5S_SELECT_SERIAL_SIZE(obj, f)) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace selection size") H5_CHECKED_ASSIGN(select_size, size_t, sselect_size, hssize_t); @@ -1621,7 +1621,7 @@ H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc) /* Encode the selection part of dataspace. */ *p = pp; - if(H5S_SELECT_SERIALIZE(obj, p) < 0) + if(H5S_SELECT_SERIALIZE(obj, p, f) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTENCODE, FAIL, "can't encode select space") } /* end else */ @@ -1715,8 +1715,8 @@ H5S_decode(const unsigned char **p) sizeof_size = *pp++; /* Allocate "fake" file structure */ - if(NULL == (f = H5F_fake_alloc(sizeof_size))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, NULL, "can't allocate fake file struct") + if(NULL == (f = H5F_fake_alloc(sizeof_size, H5P_FILE_ACCESS_DEFAULT))) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, NULL, "can't allocate fake file struct") /* Decode size of extent information */ UINT32DECODE(pp, extent_size); diff --git a/src/H5Sall.c b/src/H5Sall.c index 710727b..98d7319 100644 --- a/src/H5Sall.c +++ b/src/H5Sall.c @@ -36,8 +36,8 @@ static herr_t H5S_all_get_seq_list(const H5S_t *space, unsigned flags, size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len); static herr_t H5S_all_release(H5S_t *space); static htri_t H5S_all_is_valid(const H5S_t *space); -static hssize_t H5S_all_serial_size(const H5S_t *space); -static herr_t H5S_all_serialize(const H5S_t *space, uint8_t **p); +static hssize_t H5S_all_serial_size(const H5S_t *space, H5F_t *f); +static herr_t H5S_all_serialize(const H5S_t *space, uint8_t **p, H5F_t *f); static herr_t H5S_all_deserialize(H5S_t *space, uint32_t version, uint8_t flags, const uint8_t **p); static herr_t H5S_all_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); @@ -56,7 +56,7 @@ static herr_t H5S_all_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords); static herr_t H5S_all_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end); static hsize_t H5S_all_iter_nelmts(const H5S_sel_iter_t *iter); static htri_t H5S_all_iter_has_next_block(const H5S_sel_iter_t *iter); -static herr_t H5S_all_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); +static herr_t H5S_all_iter_next(H5S_sel_iter_t *sel_iter, hsize_t nelem); static herr_t H5S_all_iter_next_block(H5S_sel_iter_t *sel_iter); static herr_t H5S_all_iter_release(H5S_sel_iter_t *sel_iter); @@ -276,7 +276,7 @@ H5S_all_iter_has_next_block (const H5S_sel_iter_t H5_ATTR_UNUSED *iter) USAGE herr_t H5S_all_iter_next(iter, nelem) H5S_sel_iter_t *iter; IN: Pointer to selection iterator - size_t nelem; IN: Number of elements to advance by + hsize_t nelem; IN: Number of elements to advance by RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -287,7 +287,7 @@ H5S_all_iter_has_next_block (const H5S_sel_iter_t H5_ATTR_UNUSED *iter) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_all_iter_next(H5S_sel_iter_t *iter, size_t nelem) +H5S_all_iter_next(H5S_sel_iter_t *iter, hsize_t nelem) { FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -465,8 +465,9 @@ H5S_all_is_valid (const H5S_t H5_ATTR_UNUSED *space) Determine the number of bytes needed to store the serialized "all" selection information. USAGE - hssize_t H5S_all_serial_size(space) + hssize_t H5S_all_serial_size(space, f) H5S_t *space; IN: Dataspace pointer to query + H5F_t *f; IN: File pointer RETURNS The number of bytes required on success, negative on an error. DESCRIPTION @@ -478,7 +479,7 @@ H5S_all_is_valid (const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static hssize_t -H5S_all_serial_size (const H5S_t H5_ATTR_UNUSED *space) +H5S_all_serial_size (const H5S_t H5_ATTR_UNUSED *space, H5F_t H5_ATTR_UNUSED *f) { FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -498,11 +499,12 @@ H5S_all_serial_size (const H5S_t H5_ATTR_UNUSED *space) PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_all_serialize(space, p) + herr_t H5S_all_serialize(space, p, f) const H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. + H5F_t *f; IN: File pointer RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -514,7 +516,7 @@ H5S_all_serial_size (const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_all_serialize(const H5S_t *space, uint8_t **p) +H5S_all_serialize(const H5S_t *space, uint8_t **p, H5F_t H5_ATTR_UNUSED *f) { uint8_t *pp = (*p); /* Local pointer for decoding */ @@ -526,8 +528,8 @@ H5S_all_serialize(const H5S_t *space, uint8_t **p) HDassert(pp); /* Store the preamble information */ - UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(pp, (uint32_t)1); /* Store the version number */ + UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(pp, (uint32_t)H5S_ALL_VERSION_1); /* Store the version number */ UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ UINT32ENCODE(pp, (uint32_t)0); /* Store the additional information length */ diff --git a/src/H5Shyper.c b/src/H5Shyper.c index 9263cd8..71bfa51 100644 --- a/src/H5Shyper.c +++ b/src/H5Shyper.c @@ -55,8 +55,8 @@ static herr_t H5S_hyper_get_seq_list(const H5S_t *space, unsigned flags, size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len); static herr_t H5S_hyper_release(H5S_t *space); static htri_t H5S_hyper_is_valid(const H5S_t *space); -static hssize_t H5S_hyper_serial_size(const H5S_t *space); -static herr_t H5S_hyper_serialize(const H5S_t *space, uint8_t **p); +static hssize_t H5S_hyper_serial_size(const H5S_t *space, H5F_t *f); +static herr_t H5S_hyper_serialize(const H5S_t *space, uint8_t **p, H5F_t *f); static herr_t H5S_hyper_deserialize(H5S_t *space, uint32_t version, uint8_t flags, const uint8_t **p); static herr_t H5S_hyper_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); @@ -77,7 +77,7 @@ static herr_t H5S_hyper_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords) static herr_t H5S_hyper_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end); static hsize_t H5S_hyper_iter_nelmts(const H5S_sel_iter_t *iter); static htri_t H5S_hyper_iter_has_next_block(const H5S_sel_iter_t *sel_iter); -static herr_t H5S_hyper_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); +static herr_t H5S_hyper_iter_next(H5S_sel_iter_t *sel_iter, hsize_t nelem); static herr_t H5S_hyper_iter_next_block(H5S_sel_iter_t *sel_iter); static herr_t H5S_hyper_iter_release(H5S_sel_iter_t *sel_iter); @@ -664,7 +664,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5S_hyper_iter_next(H5S_sel_iter_t *iter, size_t nelem) +H5S_hyper_iter_next(H5S_sel_iter_t *iter, hsize_t nelem) { unsigned ndims; /* Number of dimensions of dataset */ int fast_dim; /* Rank of the fastest changing dimension for the dataspace */ @@ -714,14 +714,14 @@ H5S_hyper_iter_next(H5S_sel_iter_t *iter, size_t nelem) temp_dim=fast_dim; while(temp_dim>=0) { if(temp_dim==fast_dim) { - size_t actual_elem; /* Actual # of elements advanced on each iteration through loop */ + hsize_t actual_elem; /* Actual # of elements advanced on each iteration through loop */ hsize_t block_elem; /* Number of elements left in a block */ /* Compute the number of elements left in block */ block_elem=tdiminfo[temp_dim].block-iter_offset[temp_dim]; /* Compute the number of actual elements to advance */ - actual_elem=(size_t)MIN(nelem,block_elem); + actual_elem=MIN(nelem,block_elem); /* Move the iterator over as many elements as possible */ iter_offset[temp_dim]+=actual_elem; @@ -785,14 +785,14 @@ H5S_hyper_iter_next(H5S_sel_iter_t *iter, size_t nelem) /* Increment absolute position */ if(curr_dim==fast_dim) { - size_t actual_elem; /* Actual # of elements advanced on each iteration through loop */ + hsize_t actual_elem; /* Actual # of elements advanced on each iteration through loop */ hsize_t span_elem; /* Number of elements left in a span */ /* Compute the number of elements left in block */ span_elem=(curr_span->high-abs_arr[curr_dim])+1; /* Compute the number of actual elements to advance */ - actual_elem=(size_t)MIN(nelem,span_elem); + actual_elem=MIN(nelem,span_elem); /* Move the iterator over as many elements as possible */ abs_arr[curr_dim]+=actual_elem; @@ -1941,13 +1941,129 @@ done: /*-------------------------------------------------------------------------- NAME + H5S_hyper_set_offset_size + PURPOSE + Determine the offset size (4 or 8 bytes) to use for encoding hyperslab selection info + USAGE + hssize_t H5S_hyper_set_offset_size(space, block_count, bounds_end, version, offset_size) + const H5S_t *space: IN: The maximum size of the hyperslab selection info + hsize_t block_count: IN: The number of blocks in the selection + hsize_t bounds_end: IN: The selection high bounds + uint32_t version: IN: The version used for encoding + uint8_t *offset_size: OUT: The offset size + + RETURNS + The offset size + DESCRIPTION + Determine the offset size for encoding hyperslab selection info based on the + the input parameter "version". This is for release 1.10. + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +static herr_t +H5S_hyper_set_offset_size(const H5S_t *space, hsize_t block_count, hsize_t bounds_end[], uint32_t version, uint8_t *offset_size) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI_NOINIT + + switch(version) { + case H5S_HYPER_VERSION_1: + *offset_size = H5S_INFO_SIZE_4; + break; + + case H5S_HYPER_VERSION_2: + *offset_size = H5S_INFO_SIZE_8; + break; + + default: + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper offset size") + break; + } + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5S_hyper_set_offset_size() */ + + +/*-------------------------------------------------------------------------- + NAME + H5S_hyper_set_version + PURPOSE + Determine the version to use for encoding hyperslab selection info + USAGE + hssize_t H5S_hyper_set_version(space, block_count, bounds_end, f, version) + const H5S_t *space: IN: The dataspace + hsize_t block_count: IN: The number of blocks in the selection + hsize_t bounds_end: IN: The selection high bounds + H5F_t *f: IN: The file pointer + uint32_t *version: OUT: The version to use for encoding + + RETURNS + The version to use + DESCRIPTION + Determine the version to use for encoding hyperslab selection info based + on whether the number of blocks or the selection high bounds exceeds (2^32 - 1). + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +static herr_t +H5S_hyper_set_version(const H5S_t *space, hsize_t block_count, hsize_t bounds_end[], H5F_t *f, uint32_t *version) +{ + hbool_t count_up_version = FALSE; + hbool_t bound_up_version = FALSE; + unsigned u; + herr_t ret_value = SUCCEED; /* return value */ + + FUNC_ENTER_NOAPI_NOINIT + + /* Use version 2 for unlimited selection */ + if(space->select.sel_info.hslab->unlim_dim >= 0) { + *version = H5S_HYPER_VERSION_2; + HGOTO_DONE(SUCCEED) + } + + *version = H5S_HYPER_VERSION_1; + + /* Determine whether the number of blocks or the high bounds in the selection exceed (2^32 - 1) */ + if(block_count > H5S_UINT32_MAX) + count_up_version = TRUE; + else { + for(u = 0; u < space->extent.rank; u++) + if(bounds_end[u] > H5S_UINT32_MAX) + bound_up_version = TRUE; + } + + if(H5S_hyper_is_regular(space)) { + if((H5F_USE_LATEST_FLAGS(f, H5F_LATEST_DATASPACE_SELECTION) && block_count > 4) || + count_up_version || bound_up_version) + *version = H5S_HYPER_VERSION_2; + } else { /* Fail for irregular hyperslab if exceeds 32 bits */ + if(count_up_version) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "The number of blocks in hyperslab selection exceeds 2^32") + else if(bound_up_version) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "The end of bounding box in hyperslab selection exceeds 2^32") + } + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5S_hyper_set_version() */ + + +/*-------------------------------------------------------------------------- + NAME H5S_hyper_serial_size PURPOSE Determine the number of bytes needed to store the serialized hyperslab selection information. USAGE - hssize_t H5S_hyper_serial_size(space) + hssize_t H5S_hyper_serial_size(space, H5F_t *f) H5S_t *space; IN: Dataspace pointer to query + H5F_t *f; IN: File pointer RETURNS The number of bytes required on success, negative on an error. DESCRIPTION @@ -1959,52 +2075,72 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static hssize_t -H5S_hyper_serial_size(const H5S_t *space) +H5S_hyper_serial_size(const H5S_t *space, H5F_t *f) { - hsize_t block_count; /* block counter for regular hyperslabs */ - unsigned u; /* Counter */ - hssize_t ret_value = -1; /* return value */ + hsize_t block_count = 0; /* block counter for regular hyperslabs */ + hsize_t bounds_start[H5S_MAX_RANK]; /* Selection bounds */ + hsize_t bounds_end[H5S_MAX_RANK]; /* Selection bounds */ + uint32_t version; /* Version number */ + uint8_t offset_size; /* Offset size */ + unsigned u; /* Local index variable */ + hssize_t ret_value = -1; /* return value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_NOAPI_NOINIT HDassert(space); - /* Check for version (right now, an unlimited dimension is the only thing - * that would bump the version) */ - if(space->select.sel_info.hslab->unlim_dim >= 0) + /* Get bounding box for the selection */ + HDmemset(bounds_end, 0, sizeof(bounds_end)); + if(space->select.sel_info.hslab->unlim_dim < 0) { /* ! H5S_UNLIMITED */ + /* Determine the number of blocks */ + if(H5S_hyper_is_regular(space)) { + /* Check each dimension */ + for(block_count = 1, u = 0; u < space->extent.rank; u++) + block_count *= space->select.sel_info.hslab->opt_diminfo[u].count; + } /* end if */ + else + /* Spin through hyperslab spans, adding 8 * rank bytes for each block */ + block_count = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst); + + /* Get bounding box for the selection */ + if(H5S_hyper_bounds(space, bounds_start, bounds_end) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get selection bounds") + } + + /* Determine the version */ + if(H5S_hyper_set_version(space, block_count, bounds_end, f, &version) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + /* Determine the offset size */ + if(H5S_hyper_set_offset_size(space, block_count, bounds_end, version, &offset_size) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + if(version == H5S_HYPER_VERSION_2) { /* Version 2 */ /* Size required is always: * <type (4 bytes)> + <version (4 bytes)> + <flags (1 byte)> + * <length (4 bytes)> + <rank (4 bytes)> + - * (4 (start/stride/count/block) * <rank> * <value (8 bytes)>) = - * 17 + (4 * rank * 8) bytes + * (4 (start/stride/count/block) * <offset_size (8 bytes)> * <rank>) = + * 17 + (4 * 8 * rank) bytes */ - ret_value = (hssize_t)17 + ((hssize_t)4 * (hssize_t)space->extent.rank - * (hssize_t)8); - else { + HDassert(offset_size == 8); + ret_value = (hssize_t)17 + ((hssize_t)4 * (hssize_t)8 * (hssize_t)space->extent.rank); + } else { + HDassert(version == H5S_HYPER_VERSION_1); + HDassert(offset_size == 4); /* Version 1 */ /* Basic number of bytes required to serialize hyperslab selection: * <type (4 bytes)> + <version (4 bytes)> + <padding (4 bytes)> + - * <length (4 bytes)> + <rank (4 bytes)> + <# of blocks (4 bytes)> - * = 24 bytes + * <length (4 bytes)> + <rank (4 bytes)> + <# of blocks (4 bytes)> + + * (2 (starting/ending offset) * <offset_size (4 bytes)> * <rank> * <# of blocks) = + * = 24 bytes + (2 * 4 * rank * block_count) */ ret_value = 24; - - /* Check for a "regular" hyperslab selection */ - if(space->select.sel_info.hslab->diminfo_valid) { - /* Check each dimension */ - for(block_count = 1, u = 0; u < space->extent.rank; u++) - block_count *= space->select.sel_info.hslab->opt_diminfo[u].count; - } /* end if */ - else - /* Spin through hyperslab spans, adding 8 * rank bytes for each - * block */ - block_count = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst); - H5_CHECK_OVERFLOW((8 * space->extent.rank * block_count), hsize_t, hssize_t); - ret_value += (hssize_t)(8 * block_count * space->extent.rank); + ret_value += (hssize_t)(8 * space->extent.rank * block_count); } /* end else */ +done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_hyper_serial_size() */ @@ -2100,6 +2236,7 @@ H5S_hyper_serialize_helper(const H5S_hyper_span_info_t *spans, uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. + H5F_t *f; IN: File pointer RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -2111,15 +2248,15 @@ H5S_hyper_serialize_helper(const H5S_hyper_span_info_t *spans, REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_hyper_serialize(const H5S_t *space, uint8_t **p) +H5S_hyper_serialize(const H5S_t *space, uint8_t **p, H5F_t *f) { const H5S_hyper_dim_t *diminfo; /* Alias for dataspace's diminfo information */ uint8_t *pp = (*p); /* Local pointer for decoding */ hsize_t tmp_count[H5O_LAYOUT_NDIMS]; /* Temporary hyperslab counts */ - hsize_t offset[H5O_LAYOUT_NDIMS]; /* Offset of element in dataspace */ + hsize_t offset[H5O_LAYOUT_NDIMS]; /* Offset of element in dataspace */ hsize_t start[H5O_LAYOUT_NDIMS]; /* Location of start of hyperslab */ hsize_t end[H5O_LAYOUT_NDIMS]; /* Location of end of hyperslab */ - hsize_t temp_off; /* Offset in a given dimension */ + hsize_t temp_off; /* Offset in a given dimension */ uint8_t *lenp; /* pointer to length location for later storage */ uint32_t len = 0; /* number of bytes used */ uint32_t version; /* Version number */ @@ -2127,63 +2264,89 @@ H5S_hyper_serialize(const H5S_t *space, uint8_t **p) hsize_t block_count; /* block counter for regular hyperslabs */ unsigned fast_dim; /* Rank of the fastest changing dimension for the dataspace */ unsigned ndims; /* Rank of the dataspace */ + unsigned u; /* Local counting variable */ int done; /* Whether we are done with the iteration */ + uint8_t offset_size; + hsize_t bounds_start[H5S_MAX_RANK]; + hsize_t bounds_end[H5S_MAX_RANK]; + herr_t ret_value = SUCCEED; /* return value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_NOAPI_NOINIT HDassert(space); HDassert(p); HDassert(pp); - /* Calculate version */ - if(space->select.sel_info.hslab->unlim_dim >= 0) { - version = 2; - flags |= H5S_SELECT_FLAG_UNLIM; - } /* end if */ - else - version = 1; + /* Set some convienence values */ + ndims = space->extent.rank; + diminfo = space->select.sel_info.hslab->opt_diminfo; + + if(space->select.sel_info.hslab->unlim_dim < 0) { /* ! H5S_UNLIMITED */ + /* Calculate the # of blocks */ + if(H5S_hyper_is_regular(space)) { + /* Check each dimension */ + for(block_count = 1, u = 0; u < ndims; u++) + block_count *= diminfo[u].count; + } /* end if */ + else + /* Spin through hyperslab spans, adding 8 * rank bytes for each block */ + block_count = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst); + + /* Get bounding box */ + if(H5S_hyper_bounds(space, bounds_start, bounds_end) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get selection bounds") + } + + /* Determine the version to use */ + if(H5S_hyper_set_version(space, block_count, bounds_end, f, &version) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + /* Determine the size of offset info */ + if(H5S_hyper_set_offset_size(space, block_count, bounds_end, version, &offset_size) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + if(H5S_hyper_is_regular(space) && version == H5S_HYPER_VERSION_2) + flags |= H5S_HYPER_REGULAR; /* Store the preamble information */ UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ UINT32ENCODE(pp, version); /* Store the version number */ - if(version >= 2) - *(pp)++ = flags; /* Store the flags */ + + if(version == 2) + *(pp)++ = flags; /* Store the flags */ else UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ - lenp = pp; /* keep the pointer to the length location for later */ - pp += 4; /* skip over space for length */ + lenp = pp; /* keep the pointer to the length location for later */ + pp += 4; /* skip over space for length */ + + len += 4; /* ndims */ /* Encode number of dimensions */ - UINT32ENCODE(pp, (uint32_t)space->extent.rank); - len += 4; + UINT32ENCODE(pp, (uint32_t)ndims); - /* If there is an unlimited dimension, only encode opt_unlim_diminfo */ - if(flags & H5S_SELECT_FLAG_UNLIM) { + /* If flags indicates a regular hyperslab or unlimited dimension, encode opt_diminfo */ + if(flags & H5S_HYPER_REGULAR) { unsigned i; HDassert(H5S_UNLIMITED == HSIZE_UNDEF); + HDassert(version == H5S_HYPER_VERSION_2); /* Iterate over dimensions */ + /* Encode start/stride/block/count */ for(i = 0; i < space->extent.rank; i++) { - /* Encode start/stride/block/count */ - UINT64ENCODE(pp, space->select.sel_info.hslab->opt_diminfo[i].start); - UINT64ENCODE(pp, space->select.sel_info.hslab->opt_diminfo[i].stride); - UINT64ENCODE(pp, space->select.sel_info.hslab->opt_diminfo[i].count); - UINT64ENCODE(pp, space->select.sel_info.hslab->opt_diminfo[i].block); + UINT64ENCODE(pp, diminfo[i].start); + UINT64ENCODE(pp, diminfo[i].stride); + UINT64ENCODE(pp, diminfo[i].count); + UINT64ENCODE(pp, diminfo[i].block); } /* end for */ + len += (4 * space->extent.rank * 8); } /* end if */ /* Check for a "regular" hyperslab selection */ - else if(space->select.sel_info.hslab->diminfo_valid) { - unsigned u; /* Local counting variable */ + else if(H5S_hyper_is_regular(space)) { + HDassert(version == H5S_HYPER_VERSION_1); /* Set some convienence values */ - ndims = space->extent.rank; fast_dim = ndims - 1; - diminfo=space->select.sel_info.hslab->opt_diminfo; - - /* Check each dimension */ - for(block_count = 1, u = 0; u < ndims; u++) - block_count *= diminfo[u].count; /* Encode number of hyperslabs */ H5_CHECK_OVERFLOW(block_count, hsize_t, uint32_t); @@ -2262,15 +2425,16 @@ H5S_hyper_serialize(const H5S_t *space, uint8_t **p) } /* end while */ } /* end if */ else { + HDassert(version == H5S_HYPER_VERSION_1); /* Encode number of hyperslabs */ - block_count = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst); H5_CHECK_OVERFLOW(block_count, hsize_t, uint32_t); UINT32ENCODE(pp, (uint32_t)block_count); - len+=4; + + len+=4; /* block_count */ /* Add 8 bytes times the rank for each hyperslab selected */ - H5_CHECK_OVERFLOW((8 * space->extent.rank * block_count), hsize_t, size_t); - len += (uint32_t)(8 * space->extent.rank * block_count); + H5_CHECK_OVERFLOW((8 * ndims * block_count), hsize_t, size_t); + len += (uint32_t)(8 * ndims * block_count); /* Encode each hyperslab in selection */ H5S_hyper_serialize_helper(space->select.sel_info.hslab->span_lst, start, end, (hsize_t)0, &pp); @@ -2282,7 +2446,8 @@ H5S_hyper_serialize(const H5S_t *space, uint8_t **p) /* Update encoding pointer */ *p = pp; - FUNC_LEAVE_NOAPI(SUCCEED) +done: + FUNC_LEAVE_NOAPI(ret_value) } /* H5S_hyper_serialize() */ @@ -2316,7 +2481,7 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla { unsigned rank; /* rank of points */ const uint8_t *pp = (*p); /* Local pointer for decoding */ - size_t num_elem=0; /* number of elements in selection */ + hsize_t num_elem=0; /* number of elements in selection */ hsize_t start[H5O_LAYOUT_NDIMS]; /* hyperslab start information */ hsize_t end[H5O_LAYOUT_NDIMS]; /* hyperslab end information */ hsize_t stride[H5O_LAYOUT_NDIMS]; /* hyperslab stride information */ @@ -2341,14 +2506,13 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla /* (The header and rank have already beed decoded) */ rank = space->extent.rank; /* Retrieve rank from space */ - /* If there is an unlimited dimension, only encode opt_unlim_diminfo */ - if(flags & H5S_SELECT_FLAG_UNLIM) { + if(flags & H5S_HYPER_REGULAR) { HDassert(H5S_UNLIMITED == HSIZE_UNDEF); HDassert(version >= 2); /* Iterate over dimensions */ + /* Decode start/stride/block/count */ for(i = 0; i < space->extent.rank; i++) { - /* Decode start/stride/block/count */ UINT64DECODE(pp, start[i]); UINT64DECODE(pp, stride[i]); UINT64DECODE(pp, count[i]); @@ -2360,7 +2524,7 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection") } /* end if */ else { - /* decode the number of points */ + /* decode the number of blocks */ UINT32DECODE(pp,num_elem); /* Set the count & stride for all blocks */ @@ -2371,11 +2535,10 @@ H5S_hyper_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t fla /* Retrieve the coordinates from the buffer */ for(i = 0; i < num_elem; i++) { - /* Decode the starting points */ + + /* Decode the starting and ending points */ for(tstart=start,j=0; j<rank; j++,tstart++) UINT32DECODE(pp, *tstart); - - /* Decode the ending points */ for(tend = end, j = 0; j < rank; j++, tend++) UINT32DECODE(pp, *tend); diff --git a/src/H5Snone.c b/src/H5Snone.c index 104b0bb..160745b 100644 --- a/src/H5Snone.c +++ b/src/H5Snone.c @@ -37,8 +37,8 @@ static herr_t H5S_none_get_seq_list(const H5S_t *space, unsigned flags, size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len); static herr_t H5S_none_release(H5S_t *space); static htri_t H5S_none_is_valid(const H5S_t *space); -static hssize_t H5S_none_serial_size(const H5S_t *space); -static herr_t H5S_none_serialize(const H5S_t *space, uint8_t **p); +static hssize_t H5S_none_serial_size(const H5S_t *space, H5F_t *f); +static herr_t H5S_none_serialize(const H5S_t *space, uint8_t **p, H5F_t *f); static herr_t H5S_none_deserialize(H5S_t *space, uint32_t version, uint8_t flags, const uint8_t **p); static herr_t H5S_none_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); @@ -57,7 +57,7 @@ static herr_t H5S_none_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords); static herr_t H5S_none_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end); static hsize_t H5S_none_iter_nelmts(const H5S_sel_iter_t *iter); static htri_t H5S_none_iter_has_next_block(const H5S_sel_iter_t *iter); -static herr_t H5S_none_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); +static herr_t H5S_none_iter_next(H5S_sel_iter_t *sel_iter, hsize_t nelem); static herr_t H5S_none_iter_next_block(H5S_sel_iter_t *sel_iter); static herr_t H5S_none_iter_release(H5S_sel_iter_t *sel_iter); @@ -251,7 +251,7 @@ H5S_none_iter_has_next_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter) USAGE herr_t H5S_none_iter_next(iter, nelem) H5S_sel_iter_t *iter; IN: Pointer to selection iterator - size_t nelem; IN: Number of elements to advance by + hsize_t nelem; IN: Number of elements to advance by RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -262,7 +262,7 @@ H5S_none_iter_has_next_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_none_iter_next(H5S_sel_iter_t H5_ATTR_UNUSED *iter, size_t H5_ATTR_UNUSED nelem) +H5S_none_iter_next(H5S_sel_iter_t H5_ATTR_UNUSED *iter, hsize_t H5_ATTR_UNUSED nelem) { FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -433,8 +433,9 @@ H5S_none_is_valid(const H5S_t H5_ATTR_UNUSED *space) Determine the number of bytes needed to store the serialized "none" selection information. USAGE - hssize_t H5S_none_serial_size(space) + hssize_t H5S_none_serial_size(space, f) H5S_t *space; IN: Dataspace pointer to query + H5F_t *f; IN: File pointer RETURNS The number of bytes required on success, negative on an error. DESCRIPTION @@ -446,7 +447,7 @@ H5S_none_is_valid(const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static hssize_t -H5S_none_serial_size(const H5S_t H5_ATTR_UNUSED *space) +H5S_none_serial_size(const H5S_t H5_ATTR_UNUSED *space, H5F_t H5_ATTR_UNUSED *f) { FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -466,11 +467,12 @@ H5S_none_serial_size(const H5S_t H5_ATTR_UNUSED *space) PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_none_serialize(space, p) + herr_t H5S_none_serialize(space, p, f) const H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. + H5F_t *f; IN: File pointer RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -482,7 +484,7 @@ H5S_none_serial_size(const H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_none_serialize(const H5S_t *space, uint8_t **p) +H5S_none_serialize(const H5S_t *space, uint8_t **p, H5F_t H5_ATTR_UNUSED *f) { uint8_t *pp = (*p); /* Local pointer for decoding */ @@ -494,8 +496,8 @@ H5S_none_serialize(const H5S_t *space, uint8_t **p) HDassert(pp); /* Store the preamble information */ - UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(pp, (uint32_t)1); /* Store the version number */ + UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(pp, (uint32_t)H5S_NONE_VERSION_1); /* Store the version number */ UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ UINT32ENCODE(pp, (uint32_t)0); /* Store the additional information length */ diff --git a/src/H5Spkg.h b/src/H5Spkg.h index 315af29..eb52c3d 100644 --- a/src/H5Spkg.h +++ b/src/H5Spkg.h @@ -33,8 +33,28 @@ #define H5S_VALID_PERM 0x02 /* Flags for serialization of selections */ -#define H5S_SELECT_FLAG_UNLIM 0x01 -#define H5S_SELECT_FLAG_BITS (H5S_SELECT_FLAG_UNLIM) +#define H5S_HYPER_REGULAR 0x01 +#define H5S_SELECT_FLAG_BITS (H5S_HYPER_REGULAR) + +/* Versions for H5S_SEL_HYPER selection info */ +#define H5S_HYPER_VERSION_1 1 +#define H5S_HYPER_VERSION_2 2 + +/* Versions for H5S_SEL_POINTS selection info */ +#define H5S_POINT_VERSION_1 1 + +/* Versions for H5S_SEL_NONE selection info */ +#define H5S_NONE_VERSION_1 1 + +/* Versions for H5S_SEL_ALL selection info */ +#define H5S_ALL_VERSION_1 1 + +/* Size of point/offset info for H5S_SEL_POINTS/H5S_SEL_HYPER */ +#define H5S_INFO_SIZE_4 0x04 /* 4 bytes: 32 bits */ +#define H5S_INFO_SIZE_8 0x08 /* 8 bytes: 64 bits */ +#define H5S_SELECT_INFO_SIZE_BITS (H5S_INFO_SIZE_4|H5S_INFO_SIZE_8) + +#define H5S_UINT32_MAX 4294967295 /* 2^32 - 1 */ /* Length of stack-allocated sequences for "project intersect" routines */ #define H5S_PROJECT_INTERSECT_NSEQS 256 @@ -139,9 +159,9 @@ typedef herr_t (*H5S_sel_release_func_t)(H5S_t *space); /* Method to determine if current selection is valid for dataspace */ typedef htri_t (*H5S_sel_is_valid_func_t)(const H5S_t *space); /* Method to determine number of bytes required to store current selection */ -typedef hssize_t (*H5S_sel_serial_size_func_t)(const H5S_t *space); +typedef hssize_t (*H5S_sel_serial_size_func_t)(const H5S_t *space, H5F_t *f); /* Method to store current selection in "serialized" form (a byte sequence suitable for storing on disk) */ -typedef herr_t (*H5S_sel_serialize_func_t)(const H5S_t *space, uint8_t **p); +typedef herr_t (*H5S_sel_serialize_func_t)(const H5S_t *space, uint8_t **p, H5F_t *f); /* Method to create selection from "serialized" form (a byte sequence suitable for storing on disk) */ typedef herr_t (*H5S_sel_deserialize_func_t)(H5S_t *space, uint32_t version, uint8_t flags, const uint8_t **p); @@ -222,7 +242,7 @@ typedef hsize_t (*H5S_sel_iter_nelmts_func_t)(const H5S_sel_iter_t *iter); /* Method to determine if there are more blocks left in the current selection */ typedef htri_t (*H5S_sel_iter_has_next_block_func_t)(const H5S_sel_iter_t *iter); /* Method to move selection iterator to the next element in the selection */ -typedef herr_t (*H5S_sel_iter_next_func_t)(H5S_sel_iter_t *iter, size_t nelem); +typedef herr_t (*H5S_sel_iter_next_func_t)(H5S_sel_iter_t *iter, hsize_t nelem); /* Method to move selection iterator to the next block in the selection */ typedef herr_t (*H5S_sel_iter_next_block_func_t)(H5S_sel_iter_t *iter); /* Method to release iterator for current selection */ diff --git a/src/H5Spoint.c b/src/H5Spoint.c index 251a063..d13dd0a 100644 --- a/src/H5Spoint.c +++ b/src/H5Spoint.c @@ -38,8 +38,8 @@ static herr_t H5S_point_get_seq_list(const H5S_t *space, unsigned flags, size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len); static herr_t H5S_point_release(H5S_t *space); static htri_t H5S_point_is_valid(const H5S_t *space); -static hssize_t H5S_point_serial_size(const H5S_t *space); -static herr_t H5S_point_serialize(const H5S_t *space, uint8_t **p); +static hssize_t H5S_point_serial_size(const H5S_t *space, H5F_t *f); +static herr_t H5S_point_serialize(const H5S_t *space, uint8_t **p, H5F_t *f); static herr_t H5S_point_deserialize(H5S_t *space, uint32_t version, uint8_t flags, const uint8_t **p); static herr_t H5S_point_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); @@ -58,7 +58,7 @@ static herr_t H5S_point_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords) static herr_t H5S_point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end); static hsize_t H5S_point_iter_nelmts(const H5S_sel_iter_t *iter); static htri_t H5S_point_iter_has_next_block(const H5S_sel_iter_t *iter); -static herr_t H5S_point_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); +static herr_t H5S_point_iter_next(H5S_sel_iter_t *sel_iter, hsize_t nelem); static herr_t H5S_point_iter_next_block(H5S_sel_iter_t *sel_iter); static herr_t H5S_point_iter_release(H5S_sel_iter_t *sel_iter); @@ -278,7 +278,7 @@ done: USAGE herr_t H5S_point_iter_next(iter, nelem) H5S_sel_iter_t *iter; IN: Pointer to selection iterator - size_t nelem; IN: Number of elements to advance by + hsize_t nelem; IN: Number of elements to advance by RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -289,7 +289,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_point_iter_next(H5S_sel_iter_t *iter, size_t nelem) +H5S_point_iter_next(H5S_sel_iter_t *iter, hsize_t nelem) { FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -376,7 +376,7 @@ H5S_point_iter_release (H5S_sel_iter_t H5_ATTR_UNUSED * iter) USAGE herr_t H5S_point_add(space, num_elem, coord) H5S_t *space; IN: Dataspace of selection to modify - size_t num_elem; IN: Number of elements in COORD array. + hsize_t num_elem; IN: Number of elements in COORD array. const hsize_t *coord[]; IN: The location of each element selected RETURNS Non-negative on success/Negative on failure @@ -388,7 +388,7 @@ H5S_point_iter_release (H5S_sel_iter_t H5_ATTR_UNUSED * iter) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_point_add(H5S_t *space, H5S_seloper_t op, size_t num_elem, const hsize_t *coord) +H5S_point_add(H5S_t *space, H5S_seloper_t op, hsize_t num_elem, const hsize_t *coord) { H5S_pnt_node_t *top = NULL, *curr = NULL, *new_node = NULL; /* Point selection nodes */ unsigned u; /* Counter */ @@ -527,7 +527,7 @@ H5S_point_release (H5S_t *space) herr_t H5S_select_elements(dsid, op, num_elem, coord) hid_t dsid; IN: Dataspace ID of selection to modify H5S_seloper_t op; IN: Operation to perform on current selection - size_t num_elem; IN: Number of elements in COORD array. + hsize_t num_elem; IN: Number of elements in COORD array. const hsize_t *coord; IN: The location of each element selected RETURNS Non-negative on success/Negative on failure @@ -549,7 +549,7 @@ H5S_point_release (H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_select_elements(H5S_t *space, H5S_seloper_t op, size_t num_elem, +H5S_select_elements(H5S_t *space, H5S_seloper_t op, hsize_t num_elem, const hsize_t *coord) { herr_t ret_value = SUCCEED; /* return value */ @@ -752,6 +752,93 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Sget_select_elem_npoints() */ +/*-------------------------------------------------------------------------- + NAME + H5S_point_set_version + PURPOSE + Determine the version to use for encoding points selection info + USAGE + hssize_t H5S_point_set_version(space, bounds_end, f, version) + const H5S_t *space; IN: The dataspace + hsize_t bounds_end: IN: The selection high bounds + H5F_t *f: IN: The file pointer + uint32_t *version: OUT: The version to use for encoding + RETURNS + The version to use + DESCRIPTION + Determine the version to use for encoding points selection info: + For 1.10, return 1 + + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +static herr_t +H5S_point_set_version(const H5S_t *space, hsize_t bounds_end[], H5F_t *f, uint32_t *version) +{ + hbool_t exceed = FALSE; + unsigned u; + herr_t ret_value = SUCCEED; /* return value */ + + FUNC_ENTER_NOAPI_NOINIT + + *version = H5S_POINT_VERSION_1; + + /* Determine whether the number of points or the high bounds in the selection exceed (2^32 - 1) */ + for(u = 0; u < space->extent.rank; u++) + if(bounds_end[u] > H5S_UINT32_MAX) { + exceed = TRUE; + break; + } + + if(space->select.num_elem > H5S_UINT32_MAX) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "The number of points in point selection exceeds 2^32") + else if(exceed) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "The end of bounding box in point selection exceeds 2^32") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5S_point_set_version() */ + + +/*-------------------------------------------------------------------------- + NAME + H5S_point_set_info_size + PURPOSE + Determine the size of point info to use for encoding selection info + USAGE + hssize_t H5S_point_set_info_size(space, bounds_end, version, point_size) + const H5S_t *space: IN: Dataspace ID of selection to query + hsize_t bounds_end[]: IN: The selection high bounds + uint32_t version: IN: The version used for encoding + uint8_t *point_size: OUT: The size of point info + RETURNS + The size of the points selection info + DESCRIPTION + Determine the size for encoding points selection info: + For 1.10, return 4 + + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +static herr_t +H5S_point_set_info_size(const H5S_t *space, hsize_t H5_ATTR_UNUSED bounds_end[], uint32_t H5_ATTR_UNUSED version, uint8_t H5_ATTR_UNUSED *point_size) +{ + hsize_t max_size = 0; + unsigned u; + + FUNC_ENTER_NOAPI_NOINIT_NOERR + + HDassert(version == H5S_POINT_VERSION_1); + + *point_size = H5S_INFO_SIZE_4; + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* H5S_point_set_info_size() */ + /*-------------------------------------------------------------------------- NAME @@ -760,8 +847,9 @@ done: Determine the number of bytes needed to store the serialized point selection information. USAGE - hssize_t H5S_point_serial_size(space) + hssize_t H5S_point_serial_size(space, f) H5S_t *space; IN: Dataspace pointer to query + H5F_t *f; IN: File pointer RETURNS The number of bytes required on success, negative on an error. DESCRIPTION @@ -773,29 +861,54 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static hssize_t -H5S_point_serial_size (const H5S_t *space) +H5S_point_serial_size (const H5S_t *space, H5F_t *f) { H5S_pnt_node_t *curr; /* Point information nodes */ + hsize_t bounds_start[H5S_MAX_RANK]; + hsize_t bounds_end[H5S_MAX_RANK]; + uint32_t version; /* Version number */ + uint8_t point_size; /* Size of point info */ hssize_t ret_value = -1; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_NOAPI_NOINIT HDassert(space); - /* Basic number of bytes required to serialize point selection: + /* Get bounding box for the selection */ + HDmemset(bounds_end, 0, sizeof(bounds_end)); + if(H5S_point_bounds(space, bounds_start, bounds_end) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get selection bounds") + + /* Determine the version */ + if(H5S_point_set_version(space, bounds_end, f, &version) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + /* Determine the size of point info */ + if(H5S_point_set_info_size(space, bounds_end, version, &point_size) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + HDassert(version == H5S_POINT_VERSION_1); + HDassert(point_size == H5S_INFO_SIZE_4); + + /* Basic number of bytes required to serialize point selection: */ + /* * <type (4 bytes)> + <version (4 bytes)> + <padding (4 bytes)> + - * <length (4 bytes)> + <rank (4 bytes)> + <# of points (4 bytes)> = 24 bytes + * <length (4 bytes)> + <rank (4 bytes)> */ - ret_value=24; + ret_value=20; + + /* <num points (depend on point_size)> */ + ret_value += point_size; /* Count points in selection */ curr=space->select.sel_info.pnt_lst->head; while(curr!=NULL) { - /* Add 4 bytes times the rank for each element selected */ - ret_value+=4*space->extent.rank; - curr=curr->next; + /* Add <point_size> bytes times the rank for each element selected */ + ret_value += point_size * space->extent.rank; + curr = curr->next; } /* end while */ +done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_point_serial_size() */ @@ -806,11 +919,12 @@ H5S_point_serial_size (const H5S_t *space) PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_point_serialize(space, p) + herr_t H5S_point_serialize(space, p, f) const H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. + H5F_t *f; IN: File pointer RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -822,41 +936,63 @@ H5S_point_serial_size (const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_point_serialize (const H5S_t *space, uint8_t **p) +H5S_point_serialize (const H5S_t *space, uint8_t **p, H5F_t *f) { H5S_pnt_node_t *curr; /* Point information nodes */ uint8_t *pp = (*p); /* Local pointer for decoding */ uint8_t *lenp; /* pointer to length location for later storage */ uint32_t len=0; /* number of bytes used */ unsigned u; /* local counting variable */ + uint32_t version; /* Version number */ + uint8_t point_size; /* Size of point info */ + hsize_t bounds_start[H5S_MAX_RANK]; + hsize_t bounds_end[H5S_MAX_RANK]; + herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_NOAPI_NOINIT /* Check args */ HDassert(space); HDassert(p); HDassert(pp); + /* Get bounding box for the selection */ + HDmemset(bounds_end, 0, sizeof(bounds_end)); + if(H5S_point_bounds(space, bounds_start, bounds_end) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get selection bounds") + + /* Determine the version */ + if(H5S_point_set_version(space, bounds_end, f, &version) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + /* Determine the size of point info */ + if(H5S_point_set_info_size(space, bounds_end, version, &point_size) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + + HDassert(point_size == H5S_INFO_SIZE_4); + HDassert(version == H5S_POINT_VERSION_1); + /* Store the preamble information */ UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(pp, (uint32_t)1); /* Store the version number */ + UINT32ENCODE(pp, version); /* Store the version number */ + UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ - lenp = pp; /* Keep the pointer to the length location for later */ - pp += 4; /* Skip over space for length */ + lenp = pp; /* Keep the pointer to the length location for later */ + pp += 4; /* Skip over space for length */ + len += 8; /* Add in advance # of bytes for num of dimensions and num elements */ /* Encode number of dimensions */ UINT32ENCODE(pp, (uint32_t)space->extent.rank); - len+=4; + /* Encode number of elements */ UINT32ENCODE(pp, (uint32_t)space->select.num_elem); - len+=4; /* Encode each point in selection */ curr=space->select.sel_info.pnt_lst->head; while(curr!=NULL) { /* Add 4 bytes times the rank for each element selected */ - len+=4*space->extent.rank; + len += 4 * space->extent.rank; /* Encode each point */ for(u=0; u<space->extent.rank; u++) @@ -871,7 +1007,8 @@ H5S_point_serialize (const H5S_t *space, uint8_t **p) /* Update encoding pointer */ *p = pp; - FUNC_LEAVE_NOAPI(SUCCEED) +done: + FUNC_LEAVE_NOAPI(ret_value) } /* H5S_point_serialize() */ @@ -906,7 +1043,7 @@ H5S_point_deserialize(H5S_t *space, uint32_t H5_ATTR_UNUSED version, uint8_t H5_ H5S_seloper_t op = H5S_SELECT_SET; /* Selection operation */ hsize_t *coord = NULL, *tcoord; /* Pointer to array of elements */ const uint8_t *pp = (*p); /* Local pointer for decoding */ - size_t num_elem = 0; /* Number of elements in selection */ + hsize_t num_elem = 0; /* Number of elements in selection */ unsigned rank; /* Rank of points */ unsigned i, j; /* local counting variables */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1619,7 +1756,7 @@ H5Sselect_elements(hid_t spaceid, H5S_seloper_t op, size_t num_elem, HGOTO_ERROR(H5E_ARGS, H5E_UNSUPPORTED, FAIL, "unsupported operation attempted") /* Call the real element selection routine */ - if((ret_value = H5S_select_elements(space, op, num_elem, coord)) < 0) + if((ret_value = H5S_select_elements(space, op, (hsize_t)num_elem, coord)) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't select elements") done: diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h index f125035..009d877 100644 --- a/src/H5Sprivate.h +++ b/src/H5Sprivate.h @@ -149,8 +149,8 @@ typedef struct H5S_sel_iter_op_t { #define H5S_SELECT_GET_SEQ_LIST(S,FLAGS,ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN) ((*(S)->select.type->get_seq_list)(S,FLAGS,ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN)) #define H5S_SELECT_VALID(S) ((*(S)->select.type->is_valid)(S)) #define H5S_SELECT_RELEASE(S) ((*(S)->select.type->release)(S)) -#define H5S_SELECT_SERIAL_SIZE(S) ((*(S)->select.type->serial_size)(S)) -#define H5S_SELECT_SERIALIZE(S,BUF) ((*(S)->select.type->serialize)(S,BUF)) +#define H5S_SELECT_SERIAL_SIZE(S,F) ((*(S)->select.type->serial_size)(S,F)) +#define H5S_SELECT_SERIALIZE(S,BUF,F) ((*(S)->select.type->serialize)(S,BUF,F)) #define H5S_SELECT_BOUNDS(S,START,END) ((*(S)->select.type->bounds)(S,START,END)) #define H5S_SELECT_OFFSET(S, OFFSET) ((*(S)->select.type->offset)(S, OFFSET)) #define H5S_SELECT_IS_CONTIGUOUS(S) ((*(S)->select.type->is_contiguous)(S)) @@ -175,8 +175,8 @@ typedef struct H5S_sel_iter_op_t { #define H5S_SELECT_GET_SEQ_LIST(S,FLAGS,ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN) (H5S_select_get_seq_list(S,FLAGS,ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN)) #define H5S_SELECT_VALID(S) (H5S_select_valid(S)) #define H5S_SELECT_RELEASE(S) (H5S_select_release(S)) -#define H5S_SELECT_SERIAL_SIZE(S) (H5S_select_serial_size(S)) -#define H5S_SELECT_SERIALIZE(S,BUF) (H5S_select_serialize(S,BUF)) +#define H5S_SELECT_SERIAL_SIZE(S,F) (H5S_select_serial_size(S,F)) +#define H5S_SELECT_SERIALIZE(S,BUF,F) (H5S_select_serialize(S,BUF,F)) #define H5S_SELECT_BOUNDS(S,START,END) (H5S_get_select_bounds(S,START,END)) #define H5S_SELECT_OFFSET(S, OFFSET) (H5S_get_select_offset(S, OFFSET)) #define H5S_SELECT_IS_CONTIGUOUS(S) (H5S_select_is_contiguous(S)) @@ -220,7 +220,7 @@ H5_DLL H5S_t *H5S_create(H5S_class_t type); H5_DLL H5S_t *H5S_create_simple(unsigned rank, const hsize_t dims[/*rank*/], const hsize_t maxdims[/*rank*/]); H5_DLL herr_t H5S_set_latest_version(H5S_t *ds); -H5_DLL herr_t H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc); +H5_DLL herr_t H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc, hid_t fapl_id); H5_DLL H5S_t *H5S_decode(const unsigned char **p); H5_DLL herr_t H5S_debug(H5F_t *f, hid_t dxpl_id, const void *_mesg, FILE *stream, int indent, int fwidth); @@ -258,8 +258,8 @@ H5_DLL herr_t H5S_select_release(H5S_t *ds); H5_DLL herr_t H5S_select_get_seq_list(const H5S_t *space, unsigned flags, H5S_sel_iter_t *iter, size_t maxseq, size_t maxbytes, size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len); -H5_DLL hssize_t H5S_select_serial_size(const H5S_t *space); -H5_DLL herr_t H5S_select_serialize(const H5S_t *space, uint8_t **p); +H5_DLL hssize_t H5S_select_serial_size(const H5S_t *space, H5F_t *f); +H5_DLL herr_t H5S_select_serialize(const H5S_t *space, uint8_t **p, H5F_t *f); H5_DLL htri_t H5S_select_is_contiguous(const H5S_t *space); H5_DLL htri_t H5S_select_is_single(const H5S_t *space); H5_DLL htri_t H5S_select_is_regular(const H5S_t *space); @@ -279,7 +279,7 @@ H5_DLL herr_t H5S_select_none(H5S_t *space); /* Operations on point selections */ H5_DLL herr_t H5S_select_elements(H5S_t *space, H5S_seloper_t op, - size_t num_elem, const hsize_t *coord); + hsize_t num_elem, const hsize_t *coord); /* Operations on hyperslab selections */ H5_DLL herr_t H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op, const hsize_t start[], @@ -309,7 +309,7 @@ H5_DLL hsize_t H5S_hyper_get_first_inc_block(const H5S_t *space, H5_DLL herr_t H5S_select_iter_init(H5S_sel_iter_t *iter, const H5S_t *space, size_t elmt_size); H5_DLL herr_t H5S_select_iter_coords(const H5S_sel_iter_t *sel_iter, hsize_t *coords); H5_DLL hsize_t H5S_select_iter_nelmts(const H5S_sel_iter_t *sel_iter); -H5_DLL herr_t H5S_select_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); +H5_DLL herr_t H5S_select_iter_next(H5S_sel_iter_t *sel_iter, hsize_t nelem); H5_DLL herr_t H5S_select_iter_release(H5S_sel_iter_t *sel_iter); #ifdef H5_HAVE_PARALLEL diff --git a/src/H5Sselect.c b/src/H5Sselect.c index c34e1cc..dbbc927 100644 --- a/src/H5Sselect.c +++ b/src/H5Sselect.c @@ -225,7 +225,7 @@ H5S_select_get_seq_list(const H5S_t *space, unsigned flags, *------------------------------------------------------------------------- */ hssize_t -H5S_select_serial_size(const H5S_t *space) +H5S_select_serial_size(const H5S_t *space, H5F_t *f) { hssize_t ret_value = -1; /* Return value */ @@ -234,7 +234,7 @@ H5S_select_serial_size(const H5S_t *space) HDassert(space); /* Call the selection type's serial_size function */ - ret_value=(*space->select.type->serial_size)(space); + ret_value=(*space->select.type->serial_size)(space, f); FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_select_serial_size() */ @@ -251,6 +251,7 @@ H5S_select_serial_size(const H5S_t *space) uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. + H5F_t *f; IN: File pointer RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -265,7 +266,7 @@ H5S_select_serial_size(const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_select_serialize(const H5S_t *space, uint8_t **p) +H5S_select_serialize(const H5S_t *space, uint8_t **p, H5F_t *f) { herr_t ret_value=SUCCEED; /* Return value */ @@ -275,7 +276,7 @@ H5S_select_serialize(const H5S_t *space, uint8_t **p) HDassert(p); /* Call the selection type's serialize function */ - ret_value=(*space->select.type->serialize)(space,p); + ret_value=(*space->select.type->serialize)(space,p,f); FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_select_serialize() */ @@ -1225,7 +1226,7 @@ H5S_select_iter_has_next_block(const H5S_sel_iter_t *iter) USAGE herr_t H5S_select_iter_next(iter, nelem) H5S_sel_iter_t *iter; IN/OUT: Selection iterator to change - size_t nelem; IN: Number of elements to advance by + hsize_t nelem; IN: Number of elements to advance by RETURNS Non-negative on success, negative on failure. DESCRIPTION @@ -1240,7 +1241,7 @@ H5S_select_iter_has_next_block(const H5S_sel_iter_t *iter) REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_select_iter_next(H5S_sel_iter_t *iter, size_t nelem) +H5S_select_iter_next(H5S_sel_iter_t *iter, hsize_t nelem) { herr_t ret_value = FAIL; /* Return value */ @@ -2858,7 +2858,7 @@ H5T_encode(H5T_t *obj, unsigned char *buf, size_t *nalloc) FUNC_ENTER_NOAPI_NOINIT /* Allocate "fake" file structure */ - if(NULL == (f = H5F_fake_alloc((uint8_t)0))) + if(NULL == (f = H5F_fake_alloc((uint8_t)0, H5P_FILE_ACCESS_DEFAULT))) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTALLOC, FAIL, "can't allocate fake file struct") /* Find out the size of buffer needed */ @@ -2913,7 +2913,7 @@ H5T_decode(const unsigned char *buf) FUNC_ENTER_NOAPI_NOINIT /* Allocate "fake" file structure */ - if(NULL == (f = H5F_fake_alloc((uint8_t)0))) + if(NULL == (f = H5F_fake_alloc((uint8_t)0, H5P_FILE_ACCESS_DEFAULT))) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTALLOC, NULL, "can't allocate fake file struct") /* Decode the type of the information */ diff --git a/src/H5Tbit.c b/src/H5Tbit.c index 12d1fd1..df6d2c3 100644 --- a/src/H5Tbit.c +++ b/src/H5Tbit.c @@ -11,10 +11,9 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -/* - * Module Info: Operations on bit vectors. A bit vector is an array of bytes - * with the least-significant bits in the first byte. That is, - * the bytes are in little-endian order. +/* Module Info: Operations on bit vectors. A bit vector is an array of bytes + * with the least-significant bits in the first byte. That is, + * the bytes are in little-endian order. */ #include "H5Tmodule.h" /* This source code file is part of the H5T module */ @@ -29,14 +28,11 @@ /*------------------------------------------------------------------------- - * Function: H5T__bit_copy + * Function: H5T__bit_copy * - * Purpose: Copies bits from one vector to another. + * Purpose: Copies bits from one vector to another. * - * Return: void - * - * Programmer: Robb Matzke - * Wednesday, June 10, 1998 + * Return: void * *------------------------------------------------------------------------- */ @@ -50,8 +46,7 @@ H5T__bit_copy(uint8_t *dst, size_t dst_offset, const uint8_t *src, FUNC_ENTER_PACKAGE_NOERR - /* - * Normalize the offset to be a byte number and a bit offset within that + /* Normalize the offset to be a byte number and a bit offset within that * byte. */ s_idx = src_offset / 8; @@ -59,8 +54,7 @@ H5T__bit_copy(uint8_t *dst, size_t dst_offset, const uint8_t *src, src_offset %= 8; dst_offset %= 8; - /* - * Get things rolling. This means copying bits until we're aligned on a + /* Get things rolling. This means copying bits until we're aligned on a * source byte. This the following example, five bits are copied to the * destination. * @@ -75,30 +69,29 @@ H5T__bit_copy(uint8_t *dst, size_t dst_offset, const uint8_t *src, * ...+---------------+---------------+ * dst[d_idx+1] dst[d_idx] */ - while(src_offset && size > 0) { - size_t nbits = MIN3(size, 8 - dst_offset, 8 - src_offset); - size_t mask = ((size_t)1 << nbits) - 1; - - dst[d_idx] &= (uint8_t)~(mask << dst_offset); - dst[d_idx] = (uint8_t)(dst[d_idx] | (((src[s_idx] >> src_offset) & (uint8_t)mask) << dst_offset)); - - src_offset += nbits; - if(src_offset >= 8) { - s_idx++; - src_offset %= 8; - } /* end if */ - - dst_offset += nbits; - if(dst_offset >= 8) { - d_idx++; - dst_offset %= 8; - } /* end if */ - - size -= nbits; - } /* end while */ - - /* - * The middle bits. We are aligned on a source byte which needs to be + while (src_offset && size > 0) { + size_t nbits = MIN3(size, 8 - dst_offset, 8 - src_offset); + size_t mask = ((size_t)1 << nbits) - 1; + + dst[d_idx] &= (uint8_t)~(mask << dst_offset); + dst[d_idx] = (uint8_t)(dst[d_idx] | (((src[s_idx] >> src_offset) & (uint8_t)mask) << dst_offset)); + + src_offset += nbits; + if (src_offset >= 8) { + s_idx++; + src_offset %= 8; + } + + dst_offset += nbits; + if (dst_offset >= 8) { + d_idx++; + dst_offset %= 8; + } + + size -= nbits; + } + + /* The middle bits. We are aligned on a source byte which needs to be * copied to two (or one in the degenerate case) destination bytes. * * src[s_idx] @@ -122,48 +115,48 @@ H5T__bit_copy(uint8_t *dst, size_t dst_offset, const uint8_t *src, mask_lo = ((size_t)1 << (8 - shift)) - 1; mask_hi = (~mask_lo) & 0xff; - for(/*void*/; size > 8; size -= 8, d_idx++, s_idx++) { - if(shift) { - dst[d_idx + 0] &= (uint8_t)(~(mask_lo << shift)); - dst[d_idx + 0] |= (uint8_t)((src[s_idx] & mask_lo) << shift); - dst[d_idx + 1] &= (uint8_t)(~(mask_hi >> (8 - shift))); - dst[d_idx + 1] |= (uint8_t)((src[s_idx] & mask_hi) >> (8 - shift)); - } /* end if */ + for (/*void*/; size > 8; size -= 8, d_idx++, s_idx++) { + if (shift) { + dst[d_idx + 0] &= (uint8_t)(~(mask_lo << shift)); + dst[d_idx + 0] |= (uint8_t)((src[s_idx] & mask_lo) << shift); + dst[d_idx + 1] &= (uint8_t)(~(mask_hi >> (8 - shift))); + dst[d_idx + 1] |= (uint8_t)((src[s_idx] & mask_hi) >> (8 - shift)); + } else - dst[d_idx] = src[s_idx]; - } /* end for */ + dst[d_idx] = src[s_idx]; + } /* Finish up */ - while(size > 0) { - size_t nbits = (size_t)MIN3 (size, 8 - dst_offset, 8 - src_offset); - size_t mask = ((size_t)1 << nbits) - 1; + while (size > 0) { + size_t nbits = (size_t)MIN3 (size, 8 - dst_offset, 8 - src_offset); + size_t mask = ((size_t)1 << nbits) - 1; - dst[d_idx] &= (uint8_t)(~(mask << dst_offset)); - dst[d_idx] = (uint8_t)(dst[d_idx] | (((src[s_idx] >> src_offset) & (uint8_t)mask) << dst_offset)); + dst[d_idx] &= (uint8_t)(~(mask << dst_offset)); + dst[d_idx] = (uint8_t)(dst[d_idx] | (((src[s_idx] >> src_offset) & (uint8_t)mask) << dst_offset)); - src_offset += nbits; - if(src_offset >= 8) { - s_idx++; - src_offset %= 8; - } /* end if */ + src_offset += nbits; + if (src_offset >= 8) { + s_idx++; + src_offset %= 8; + } - dst_offset += nbits; - if(dst_offset >= 8) { - d_idx++; - dst_offset %= 8; - } /* end if */ + dst_offset += nbits; + if (dst_offset >= 8) { + d_idx++; + dst_offset %= 8; + } - size -= nbits; - } /* end while */ + size -= nbits; + } FUNC_LEAVE_NOAPI_VOID } /* end H5T__bit_copy() */ /*------------------------------------------------------------------------- - * Function: H5T__bit_shift + * Function: H5T__bit_shift * - * Purpose: Simulation of hardware shifting. Shifts a bit vector + * Purpose: Simulation of hardware shifting. Shifts a bit vector * in a way similar to shifting a variable value, like * value <<= 3, or value >>= 16. SHIFT_DIST is positive for * left shift, negative for right shift. The bit vector starts @@ -173,10 +166,7 @@ H5T__bit_copy(uint8_t *dst, size_t dst_offset, const uint8_t *src, * For example, if we have a bit sequence 00011100, offset=2, * size=3, shift_dist=2, the result will be 00010000. * - * Return: void - * - * Programmer: Raymond Lu - * Monday, April 12, 2004 + * Return: void * *------------------------------------------------------------------------- */ @@ -193,25 +183,25 @@ H5T__bit_shift(uint8_t *buf, ssize_t shift_dist, size_t offset, size_t size) HDassert(buf); HDassert(size); - if(shift_dist) { + if (shift_dist) { size_t abs_shift_dist = (size_t)ABS(shift_dist); - if(abs_shift_dist >= size) + if (abs_shift_dist >= size) H5T__bit_set(buf, offset, size, 0); else { size_t buf_size = (size / 8) + 1; /* Size of shift buffer needed */ uint8_t *shift_buf; /* Pointer to shift buffer */ /* Wrap the local buffer for serialized header info */ - if(NULL == (wb = H5WB_wrap(tmp_buf, sizeof(tmp_buf)))) + if (NULL == (wb = H5WB_wrap(tmp_buf, sizeof(tmp_buf)))) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "can't wrap buffer") /* Get a pointer to a buffer that's large enough */ - if(NULL == (shift_buf = (uint8_t *)H5WB_actual(wb, buf_size))) + if (NULL == (shift_buf = (uint8_t *)H5WB_actual(wb, buf_size))) HGOTO_ERROR(H5E_DATATYPE, H5E_NOSPACE, FAIL, "can't get actual buffer") /* Shift vector by making copies */ - if(shift_dist > 0) { /* left shift */ + if (shift_dist > 0) { /* left shift */ /* Copy part to be shifted to a temporary buffer */ H5T__bit_copy(shift_buf, (size_t)0, buf, offset, size - abs_shift_dist); @@ -220,18 +210,18 @@ H5T__bit_shift(uint8_t *buf, ssize_t shift_dist, size_t offset, size_t size) /* Zero-set the left part*/ H5T__bit_set(buf, offset, abs_shift_dist, 0); - } /* end if */ + } else { /* right shift */ H5T__bit_copy(shift_buf, (size_t)0, buf, offset + abs_shift_dist, size - abs_shift_dist); H5T__bit_copy(buf, offset, shift_buf, (size_t)0, size - abs_shift_dist); H5T__bit_set(buf, offset + size - abs_shift_dist, abs_shift_dist, 0); - } /* end else */ + } } /* end else */ } /* end if */ done: /* Release resources */ - if(wb && H5WB_unwrap(wb) < 0) + if (wb && H5WB_unwrap(wb) < 0) HDONE_ERROR(H5E_DATATYPE, H5E_CLOSEERROR, FAIL, "can't close wrapped buffer") FUNC_LEAVE_NOAPI(ret_value) @@ -239,27 +229,24 @@ done: /*------------------------------------------------------------------------- - * Function: H5T__bit_get_d + * Function: H5T__bit_get_d * - * Purpose: Return a small bit sequence as a number. Bit vector starts + * Purpose: Return a small bit sequence as a number. Bit vector starts * at OFFSET and is SIZE bits long. * - * Return: Success: The bit sequence interpretted as an unsigned - * integer. - * - * Failure: 0 + * Return: Success: The bit sequence interpretted as an unsigned + * integer. * - * Programmer: Robb Matzke - * Tuesday, June 23, 1998 + * Failure: 0 * *------------------------------------------------------------------------- */ uint64_t H5T__bit_get_d(uint8_t *buf, size_t offset, size_t size) { - uint64_t val = 0; - size_t i, hs; - uint64_t ret_value = 0; /* Return value */ + uint64_t val = 0; + size_t i, hs; + uint64_t ret_value = 0; /* Return value */ FUNC_ENTER_PACKAGE_NOERR @@ -271,11 +258,11 @@ H5T__bit_get_d(uint8_t *buf, size_t offset, size_t size) break; case H5T_ORDER_BE: - for(i = 0, hs = sizeof(val) / 2; i < hs; i++) { + for (i = 0, hs = sizeof(val) / 2; i < hs; i++) { uint8_t tmp = ((uint8_t*)&val)[i]; ((uint8_t*)&val)[i] = ((uint8_t*)&val)[sizeof(val) - (i + 1)]; ((uint8_t*)&val)[sizeof(val) - (i + 1)] = tmp; - } /* end for */ + } break; case H5T_ORDER_ERROR: @@ -285,7 +272,7 @@ H5T__bit_get_d(uint8_t *buf, size_t offset, size_t size) default: /* Unknown endianness. Bail out. */ HGOTO_DONE(UFAIL) - } /* end switch */ + } /* Set return value */ ret_value = val; @@ -296,14 +283,11 @@ done: /*------------------------------------------------------------------------- - * Function: H5T__bit_set_d + * Function: H5T__bit_set_d * - * Purpose: Sets part of a bit vector to the specified unsigned value. + * Purpose: Sets part of a bit vector to the specified unsigned value. * - * Return: void - * - * Programmer: Robb Matzke - * Wednesday, June 24, 1998 + * Return: void * *------------------------------------------------------------------------- */ @@ -321,11 +305,11 @@ H5T__bit_set_d(uint8_t *buf, size_t offset, size_t size, uint64_t val) break; case H5T_ORDER_BE: - for(i = 0, hs = sizeof(val) / 2; i < hs; i++) { + for (i = 0, hs = sizeof(val) / 2; i < hs; i++) { uint8_t tmp = ((uint8_t *)&val)[i]; ((uint8_t *)&val)[i] = ((uint8_t *)&val)[sizeof(val) - (i + 1)]; ((uint8_t *)&val)[sizeof(val) - (i + 1)] = tmp; - } /* end for */ + } break; case H5T_ORDER_ERROR: @@ -334,7 +318,7 @@ H5T__bit_set_d(uint8_t *buf, size_t offset, size_t size, uint64_t val) case H5T_ORDER_MIXED: default: HDabort(); - } /* end switch */ + } H5T__bit_copy(buf, offset, (uint8_t*)&val, (size_t)0, size); @@ -343,24 +327,19 @@ H5T__bit_set_d(uint8_t *buf, size_t offset, size_t size, uint64_t val) /*------------------------------------------------------------------------- - * Function: H5T__bit_set + * Function: H5T__bit_set * - * Purpose: Sets or clears bits in a contiguous region of a vector - * beginning at bit OFFSET and continuing for SIZE bits. + * Purpose: Sets or clears bits in a contiguous region of a vector + * beginning at bit OFFSET and continuing for SIZE bits. * - * Return: void - * - * Programmer: Robb Matzke - * Wednesday, June 10, 1998 - * - * Modifications: + * Return: void * *------------------------------------------------------------------------- */ void H5T__bit_set(uint8_t *buf, size_t offset, size_t size, hbool_t value) { - int idx; + int idx; FUNC_ENTER_PACKAGE_NOERR @@ -369,54 +348,51 @@ H5T__bit_set(uint8_t *buf, size_t offset, size_t size, hbool_t value) offset %= 8; /* The first partial byte */ - if(size && offset % 8) { - size_t nbits = MIN(size, 8 - offset); - unsigned mask = ((unsigned)1 << nbits) - 1; + if (size && offset % 8) { + size_t nbits = MIN(size, 8 - offset); + unsigned mask = ((unsigned)1 << nbits) - 1; - if(value) - buf[idx] = (uint8_t)(buf[idx] | (mask << offset)); - else - buf[idx] &= (uint8_t)(~(mask << offset)); + if (value) + buf[idx] = (uint8_t)(buf[idx] | (mask << offset)); + else + buf[idx] &= (uint8_t)(~(mask << offset)); - idx++; - size -= nbits; - } /* end if */ + idx++; + size -= nbits; + } /* The middle bytes */ - while(size >= 8) { - buf[idx++] = value ? 0xff : 0x00; - size -= 8; - } /* end while */ + while (size >= 8) { + buf[idx++] = value ? 0xff : 0x00; + size -= 8; + } /* The last partial byte */ - if(size) { - if(value) - buf[idx] |= (uint8_t)(((unsigned)1 << size) - 1); - else - buf[idx] &= (uint8_t)(~(((unsigned)1 << size) - 1)); - } /* end if */ + if (size) { + if (value) + buf[idx] |= (uint8_t)(((unsigned)1 << size) - 1); + else + buf[idx] &= (uint8_t)(~(((unsigned)1 << size) - 1)); + } FUNC_LEAVE_NOAPI_VOID } /* end H5T__bit_set() */ /*------------------------------------------------------------------------- - * Function: H5T__bit_find + * Function: H5T__bit_find * - * Purpose: Finds the first bit with the specified VALUE within a region - * of a bit vector. The region begins at OFFSET and continues - * for SIZE bits, but the region can be searched from the least - * significat end toward the most significant end(H5T_BIT_LSB - * as DIRECTION), or from the most significant end to the least - * significant end(H5T_BIT_MSB as DIRECTION). + * Purpose: Finds the first bit with the specified VALUE within a region + * of a bit vector. The region begins at OFFSET and continues + * for SIZE bits, but the region can be searched from the least + * significat end toward the most significant end(H5T_BIT_LSB + * as DIRECTION), or from the most significant end to the least + * significant end(H5T_BIT_MSB as DIRECTION). * - * Return: Success: The position of the bit found, relative to - * the offset. + * Return: Success: The position of the bit found, relative to + * the offset. * - * Failure: -1 - * - * Programmer: Robb Matzke - * Wednesday, June 10, 1998 + * Failure: -1 * *------------------------------------------------------------------------- */ @@ -424,9 +400,9 @@ ssize_t H5T__bit_find(uint8_t *buf, size_t offset, size_t size, H5T_sdir_t direction, hbool_t value) { - ssize_t base = (ssize_t)offset; - ssize_t idx, i; - size_t iu; + ssize_t base = (ssize_t)offset; + ssize_t idx, i; + size_t iu; ssize_t ret_value = (-1); /* Return value */ /* Use FUNC_ENTER_PACKAGE_NOERR here to avoid performance issues */ @@ -435,16 +411,16 @@ H5T__bit_find(uint8_t *buf, size_t offset, size_t size, H5T_sdir_t direction, /* Some functions call this with value=TRUE */ HDassert(TRUE == 1); - switch(direction) { + switch (direction) { case H5T_BIT_LSB: /* Calculate index */ idx = (ssize_t)(offset / 8); offset %= 8; /* Beginning */ - if(offset) { - for(iu = offset; iu < 8 && size > 0; iu++, size--) - if(value == (hbool_t)((buf[idx] >> iu) & 0x01)) + if (offset) { + for (iu = offset; iu < 8 && size > 0; iu++, size--) + if (value == (hbool_t)((buf[idx] >> iu) & 0x01)) HGOTO_DONE(8 * idx + (ssize_t)iu - base); offset = 0; @@ -452,10 +428,10 @@ H5T__bit_find(uint8_t *buf, size_t offset, size_t size, H5T_sdir_t direction, } /* end if */ /* Middle */ - while(size >= 8) { - if((value ? 0x00 : 0xff) != buf[idx]) - for(i = 0; i < 8; i++) - if(value == (hbool_t)((buf[idx] >> i) & 0x01)) + while (size >= 8) { + if ((value ? 0x00 : 0xff) != buf[idx]) + for (i = 0; i < 8; i++) + if (value == (hbool_t)((buf[idx] >> i) & 0x01)) HGOTO_DONE(8 * idx + i - base); size -= 8; @@ -463,8 +439,8 @@ H5T__bit_find(uint8_t *buf, size_t offset, size_t size, H5T_sdir_t direction, } /* end while */ /* End */ - for(i = 0; i < (ssize_t)size; i++) - if(value == (hbool_t)((buf[idx] >> i) & 0x01)) + for (i = 0; i < (ssize_t)size; i++) + if (value == (hbool_t)((buf[idx] >> i) & 0x01)) HGOTO_DONE(8 * idx + i - base); break; @@ -474,19 +450,19 @@ H5T__bit_find(uint8_t *buf, size_t offset, size_t size, H5T_sdir_t direction, offset %= 8; /* Beginning */ - if(size > 8 - offset && (offset + size) % 8) { - for(iu = (offset + size) % 8; iu > 0; --iu, --size) - if(value == (hbool_t)((buf[idx] >> (iu - 1)) & 0x01)) + if (size > 8 - offset && (offset + size) % 8) { + for (iu = (offset + size) % 8; iu > 0; --iu, --size) + if (value == (hbool_t)((buf[idx] >> (iu - 1)) & 0x01)) HGOTO_DONE(8 * idx + (ssize_t)(iu - 1) - base); --idx; } /* end if */ /* Middle */ - while(size >= 8) { - if((value ? 0x00 : 0xff) != buf[idx]) { - for(i = 7; i >= 0; --i) - if(value == (hbool_t)((buf[idx] >> i) & 0x01)) + while (size >= 8) { + if ((value ? 0x00 : 0xff) != buf[idx]) { + for (i = 7; i >= 0; --i) + if (value == (hbool_t)((buf[idx] >> i) & 0x01)) HGOTO_DONE(8 * idx + i - base); } /* end if */ @@ -495,11 +471,11 @@ H5T__bit_find(uint8_t *buf, size_t offset, size_t size, H5T_sdir_t direction, } /* end while */ /* End */ - if(size > 0) { - for(iu = offset + size; iu > offset; --iu) - if(value == (hbool_t)((buf[idx] >> (iu - 1)) & 0x01)) + if (size > 0) { + for (iu = offset + size; iu > offset; --iu) + if (value == (hbool_t)((buf[idx] >> (iu - 1)) & 0x01)) HGOTO_DONE(8 * idx + (ssize_t)(iu - 1) - base); - } /* end if */ + } break; default: @@ -519,17 +495,14 @@ done: * * Return: The carry-out value. TRUE if overflows, FALSE otherwise. * - * Programmer: Robb Matzke - * Friday, June 26, 1998 - * *------------------------------------------------------------------------- */ hbool_t H5T__bit_inc(uint8_t *buf, size_t start, size_t size) { - size_t idx = start / 8; - unsigned carry = 1; - unsigned acc, mask; + size_t idx = start / 8; + unsigned carry = 1; + unsigned acc, mask; /* Use FUNC_ENTER_PACKAGE_NOERR here to avoid performance issues */ FUNC_ENTER_PACKAGE_NOERR @@ -539,7 +512,7 @@ H5T__bit_inc(uint8_t *buf, size_t start, size_t size) start %= 8; /* The first partial byte */ - if(start) { + if (start) { if(size + start < 8) mask = ((unsigned)1 << size) - 1; else @@ -552,34 +525,34 @@ H5T__bit_inc(uint8_t *buf, size_t start, size_t size) size -= MIN(size, 8 - start); start = 0; idx++; - } /* end if */ + } /* The middle */ - while(carry && size >= 8) { + while (carry && size >= 8) { acc = buf[idx]; acc++; carry = acc & 0x100; buf[idx] = acc & 0xff; idx++; size -= 8; - } /* end while */ + } /* The last bits */ - if(carry && size > 0) { + if (carry && size > 0) { mask = ((unsigned)1 << size) - 1; acc = buf[idx] & mask; acc++; carry = acc & ((unsigned)1 << size); buf[idx] &= (uint8_t)(~mask); buf[idx] |= (uint8_t)(acc & mask); - } /* end if */ + } FUNC_LEAVE_NOAPI(carry ? TRUE : FALSE) } /* end H5T__bit_inc() */ /*------------------------------------------------------------------------- - * Function: H5T__bit_dec + * Function: H5T__bit_dec * * Purpose: Decrement part of a bit field by substracting 1. The bit * field starts with bit position START and is SIZE bits long. @@ -587,18 +560,15 @@ H5T__bit_inc(uint8_t *buf, size_t start, size_t size) * Return: The "borrow-in" value. It's TRUE if underflows, FALSE * otherwise. * - * Programmer: Raymond Lu - * March 17, 2004 - * *------------------------------------------------------------------------- */ hbool_t H5T__bit_dec(uint8_t *buf, size_t start, size_t size) { - size_t idx = start / 8; + size_t idx = start / 8; size_t pos = start % 8; uint8_t tmp; - unsigned borrow = 0; + unsigned borrow = 0; /* Use FUNC_ENTER_PACKAGE_NOERR here to avoid performance issues */ FUNC_ENTER_PACKAGE_NOERR @@ -607,71 +577,72 @@ H5T__bit_dec(uint8_t *buf, size_t start, size_t size) HDassert(size); /* The first partial byte */ - if((size + start - 1) / 8 > idx) { /*bit sequence doesn't end in the same byte as starts*/ + if ((size + start - 1) / 8 > idx) { + /* The bit sequence doesn't end in the same byte as starts */ + /* Example: a sequence like 11000100 and start = 3. We substract 00001000 from * it and get 10111100. If a sequence is 00000111, we do right shift for START * bits and get 00000000. So we need to borrow from higher byte when we substract * 00001000. */ - if(!(buf[idx] >> pos)) + if (!(buf[idx] >> pos)) borrow = 1; buf[idx] = (uint8_t)(buf[idx] - (1 << pos)); idx++; size -= (8 - pos); /* The middle bytes */ - while(borrow && size >= 8) { - if(buf[idx]) + while (borrow && size >= 8) { + if (buf[idx]) borrow = 0; buf[idx]--; idx++; size -= 8; - } /* end while */ + } /* The last partial byte */ - if(borrow && size > 0) { + if (borrow && size > 0) { /* Similar to the first byte case, where sequence ends in the same byte as starts */ tmp = buf[idx]; buf[idx]--; - if((buf[idx] >> size) != tmp >> size) + if ((buf[idx] >> size) != tmp >> size) buf[idx] = (uint8_t)(buf[idx] + (1 << size)); - } /* end if */ - } /* end if */ - else { /* bit sequence ends in the same byte as starts */ + } + } + else { + /* The bit sequence ends in the same byte as starts */ + /* Example: a sequence like 11000100 and pos=3, size=3. We substract 00001000 * and get 10111100. A bit is borrowed from 6th bit(buf[idx]>>6=00000010, tmp>>6=00000011, * not equal). We need to put this bit back by increment 1000000. */ tmp = buf[idx]; buf[idx] = (uint8_t)(buf[idx] - (1 << pos)); - if((buf[idx] >> (pos + size)) != tmp >> (pos + size)) { + if ((buf[idx] >> (pos + size)) != tmp >> (pos + size)) { buf[idx] = (uint8_t)(buf[idx] + (1 << (pos + size))); borrow = 1; - } /* end if */ - } /* end else */ + } + } FUNC_LEAVE_NOAPI(borrow ? TRUE : FALSE) } /* end H5T__bit_dec() */ /*------------------------------------------------------------------------- - * Function: H5T__bit_neg - * - * Purpose: negate part of a bit sequence. The bit - * field starts with bit position START and is SIZE bits long. + * Function: H5T__bit_neg * - * Return: void + * Purpose: Negate part of a bit sequence. The bit field starts with + * bit position START and is SIZE bits long. * - * Programmer: Raymond Lu - * March 19, 2004 + * Return: void * *------------------------------------------------------------------------- */ void H5T__bit_neg(uint8_t *buf, size_t start, size_t size) { - size_t idx = start / 8; + size_t idx = start / 8; size_t pos = start % 8; uint8_t tmp[1]; @@ -695,17 +666,19 @@ H5T__bit_neg(uint8_t *buf, size_t start, size_t size) buf[idx] = (uint8_t)~(buf[idx]); idx++; size -= 8; - } /* end while */ + } /* The last partial byte */ if(size > 0) { /* Similar to the first byte case, where sequence ends in the same byte as starts */ tmp[0] = (uint8_t)~buf[idx]; H5T__bit_copy(&(buf[idx]), (size_t)0, tmp, (size_t)0, size); - } /* end if */ - } /* end if */ - else /* bit sequence ends in the same byte as starts */ + } + } + else { + /* bit sequence ends in the same byte as starts */ H5T__bit_copy(&(buf[idx]), pos, tmp, pos, size); + } FUNC_LEAVE_NOAPI_VOID } /* end H5T__bit_neg() */ diff --git a/src/H5Tcommit.c b/src/H5Tcommit.c index c28b508..30fbeeb 100644 --- a/src/H5Tcommit.c +++ b/src/H5Tcommit.c @@ -26,14 +26,15 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5ACprivate.h" /* Metadata cache */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FOprivate.h" /* File objects */ -#include "H5Iprivate.h" /* IDs */ -#include "H5Lprivate.h" /* Links */ -#include "H5Pprivate.h" /* Property lists */ -#include "H5Tpkg.h" /* Datatypes */ +#include "H5private.h" /* Generic Functions */ +#include "H5ACprivate.h" /* Metadata cache */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FOprivate.h" /* File objects */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Lprivate.h" /* Links */ +#include "H5MMprivate.h" /* Memory Management */ +#include "H5Pprivate.h" /* Property lists */ +#include "H5Tpkg.h" /* Datatypes */ /****************/ diff --git a/src/H5Tconv.c b/src/H5Tconv.c index 84a997e..3f4b489 100644 --- a/src/H5Tconv.c +++ b/src/H5Tconv.c @@ -4079,13 +4079,15 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, sp = dp = (uint8_t*)buf; direction = 1; olap = nelmts; - } else if (src_p->shared->size>=dst_p->shared->size) { + } + else if (src_p->shared->size>=dst_p->shared->size) { double olap_d = HDceil((double)(dst_p->shared->size)/ (double)(src_p->shared->size-dst_p->shared->size)); olap = (size_t)olap_d; sp = dp = (uint8_t*)buf; direction = 1; - } else { + } + else { double olap_d = HDceil((double)(src_p->shared->size)/ (double)(dst_p->shared->size-src_p->shared->size)); olap = (size_t)olap_d; @@ -4127,7 +4129,8 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, if (direction>0) { s = sp; d = elmtno<olap ? dbuf : dp; - } else { + } + else { s = sp; d = elmtno+olap >= nelmts ? dbuf : dp; } @@ -4136,7 +4139,8 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, if (d==dbuf) { HDassert((dp>=sp && dp<sp+src_p->shared->size) || (sp>=dp && sp<dp+dst_p->shared->size)); - } else { + } + else { HDassert((dp<sp && dp+dst_p->shared->size<=sp) || (sp<dp && sp+src_p->shared->size<=dp)); } @@ -4154,7 +4158,8 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, s[src_p->shared->size-(i+1)] = s[i]; s[i] = tmp1; } - } else if (H5T_ORDER_VAX==src.order) { + } + else if (H5T_ORDER_VAX==src.order) { tsize = src_p->shared->size; HDassert(0 == tsize % 2); @@ -4187,7 +4192,8 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, H5T__bit_set (d, dst.u.f.epos, dst.u.f.esize, FALSE); H5T__bit_set (d, dst.u.f.mpos, dst.u.f.msize, FALSE); goto padding; - } else if (H5T__bit_find (s, src.u.f.epos, src.u.f.esize, + } + else if (H5T__bit_find (s, src.u.f.epos, src.u.f.esize, H5T_BIT_LSB, FALSE)<0) { /* +Inf or -Inf */ if(cb_struct.func) { /*If user's exception handler is present, use it*/ @@ -4210,16 +4216,19 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, *this case.*/ if (H5T_NORM_NONE==dst.u.f.norm) H5T__bit_set (d, dst.u.f.mpos+dst.u.f.msize-1, (size_t)1, TRUE); - } else if(except_ret == H5T_CONV_HANDLED) { + } + else if(except_ret == H5T_CONV_HANDLED) { /*No need to reverse the order of destination because user handles it*/ reverse = FALSE; goto next; - } else if(except_ret == H5T_CONV_ABORT) + } + else if(except_ret == H5T_CONV_ABORT) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCONVERT, FAIL, "can't handle conversion exception") goto padding; } - } else if (H5T_NORM_NONE==src.u.f.norm && H5T__bit_find (s, src.u.f.mpos, src.u.f.msize-1, + } + else if (H5T_NORM_NONE==src.u.f.norm && H5T__bit_find (s, src.u.f.mpos, src.u.f.msize-1, H5T_BIT_LSB, TRUE)<0 && H5T__bit_find (s, src.u.f.epos, src.u.f.esize, H5T_BIT_LSB, FALSE)<0) { /*This is a special case for the source of no implied mantissa bit. @@ -4246,11 +4255,13 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, *this case.*/ if (H5T_NORM_NONE==dst.u.f.norm) H5T__bit_set (d, dst.u.f.mpos+dst.u.f.msize-1, (size_t)1, TRUE); - } else if(except_ret == H5T_CONV_HANDLED) { + } + else if(except_ret == H5T_CONV_HANDLED) { /*No need to reverse the order of destination because user handles it*/ reverse = FALSE; goto next; - } else if(except_ret == H5T_CONV_ABORT) + } + else if(except_ret == H5T_CONV_ABORT) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCONVERT, FAIL, "can't handle conversion exception") goto padding; @@ -4259,7 +4270,8 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, * still need to handle legacy VAX files so this code must * remain in place. */ - } else if (H5T__bit_find (s, src.u.f.epos, src.u.f.esize, + } + else if (H5T__bit_find (s, src.u.f.epos, src.u.f.esize, H5T_BIT_LSB, FALSE)<0) { /* NaN */ if(cb_struct.func) { /*If user's exception handler is present, use it*/ @@ -4275,11 +4287,13 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, H5T__bit_copy (d, dst.u.f.sign, s, src.u.f.sign, (size_t)1); H5T__bit_set (d, dst.u.f.epos, dst.u.f.esize, TRUE); H5T__bit_set(d, dst.u.f.mpos, dst.u.f.msize, TRUE); - } else if(except_ret == H5T_CONV_HANDLED) { + } + else if(except_ret == H5T_CONV_HANDLED) { /*No need to reverse the order of destination because user handles it*/ reverse = FALSE; goto next; - } else if(except_ret == H5T_CONV_ABORT) + } + else if(except_ret == H5T_CONV_ABORT) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCONVERT, FAIL, "can't handle conversion exception") goto padding; @@ -4292,7 +4306,7 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, */ expo = (int64_t)H5T__bit_get_d(s, src.u.f.epos, src.u.f.esize); - if(expo==0) + if (expo==0) denormalized=TRUE; /* @@ -4302,16 +4316,19 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, implied = 1; mpos = src.u.f.mpos; mrsh = 0; - if(0 == expo || H5T_NORM_NONE == src.u.f.norm) { - if((bitno = H5T__bit_find(s, src.u.f.mpos, src.u.f.msize, H5T_BIT_MSB, TRUE)) > 0) { + if (0 == expo || H5T_NORM_NONE == src.u.f.norm) { + if ((bitno = H5T__bit_find(s, src.u.f.mpos, src.u.f.msize, H5T_BIT_MSB, TRUE)) > 0) { msize = (size_t)bitno; - } else if (0==bitno) { + } + else if (0==bitno) { msize = 1; H5T__bit_set(s, src.u.f.mpos, (size_t)1, FALSE); } - } else if (H5T_NORM_IMPLIED==src.u.f.norm) { + } + else if (H5T_NORM_IMPLIED==src.u.f.norm) { msize = src.u.f.msize; - } else { + } + else { HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCONVERT, FAIL, "normalization method not implemented yet") } @@ -4328,9 +4345,11 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, if (0==expo || H5T_NORM_NONE==src.u.f.norm) { HDassert(bitno>=0); expo -= (int64_t)((src.u.f.ebias - 1) + (src.u.f.msize - (size_t)bitno)); - } else if (H5T_NORM_IMPLIED==src.u.f.norm) { + } + else if (H5T_NORM_IMPLIED==src.u.f.norm) { expo -= (int64_t)src.u.f.ebias; - } else { + } + else { HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCONVERT, FAIL, "normalization method not implemented yet") } @@ -4353,7 +4372,8 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, expo = 0; H5T__bit_set(d, dst.u.f.mpos, dst.u.f.msize, FALSE); msize = 0; - } else if (expo<=0) { + } + else if (expo<=0) { /* * The exponent is too small to fit in the exponent field, * but by shifting the mantissa to the right we can @@ -4363,7 +4383,8 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, mrsh += (size_t)(1 - expo); expo = 0; denormalized=TRUE; - } else if (expo>=expo_max) { + } + else if (expo>=expo_max) { /* * The exponent is too large to fit in the available region * or it results in the maximum possible value. Use positive @@ -4383,7 +4404,8 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, expo = expo_max; H5T__bit_set(d, dst.u.f.mpos, dst.u.f.msize, FALSE); msize = 0; - } else if(except_ret == H5T_CONV_ABORT) + } + else if(except_ret == H5T_CONV_ABORT) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCONVERT, FAIL, "can't handle conversion exception") else if(except_ret == H5T_CONV_HANDLED) { reverse = FALSE; @@ -4410,7 +4432,8 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, if(carry) implied = 2; } - } else if(H5T__bit_get_d(s, (mpos + (size_t)bitno) - 1, (size_t)1) && denormalized) + } + else if(H5T__bit_get_d(s, (mpos + (size_t)bitno) - 1, (size_t)1) && denormalized) /* For either source or destination, denormalized value doesn't increment carry.*/ H5T__bit_inc(s, mpos + (size_t)bitno - 1, 1 + msize - (size_t)bitno); } @@ -4422,13 +4445,16 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, */ if (mrsh>dst.u.f.msize+1) { H5T__bit_set(d, dst.u.f.mpos, dst.u.f.msize, FALSE); - } else if (mrsh==dst.u.f.msize+1) { + } + else if (mrsh==dst.u.f.msize+1) { H5T__bit_set(d, dst.u.f.mpos+1, dst.u.f.msize-1, FALSE); H5T__bit_set(d, dst.u.f.mpos, (size_t)1, TRUE); - } else if (mrsh==dst.u.f.msize) { + } + else if (mrsh==dst.u.f.msize) { H5T__bit_set(d, dst.u.f.mpos, dst.u.f.msize, FALSE); H5T__bit_set_d(d, dst.u.f.mpos, MIN(2, dst.u.f.msize), (hsize_t)implied); - } else { + } + else { if (mrsh>0) { H5T__bit_set(d, dst.u.f.mpos+dst.u.f.msize-mrsh, mrsh, FALSE); @@ -4439,7 +4465,8 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, H5T__bit_copy(d, dst.u.f.mpos, s, (mpos+msize+mrsh-dst.u.f.msize), dst.u.f.msize-mrsh); - } else { + } + else { H5T__bit_copy(d, dst.u.f.mpos+dst.u.f.msize-(mrsh+msize), s, mpos, msize); H5T__bit_set(d, dst.u.f.mpos, dst.u.f.msize-(mrsh+msize), @@ -4469,7 +4496,8 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, if(except_ret == H5T_CONV_UNHANDLED) { expo = expo_max; H5T__bit_set(d, dst.u.f.mpos, dst.u.f.msize, FALSE); - } else if(except_ret == H5T_CONV_ABORT) + } + else if(except_ret == H5T_CONV_ABORT) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCONVERT, FAIL, "can't handle conversion exception") else if(except_ret == H5T_CONV_HANDLED) { reverse = FALSE; diff --git a/src/H5Tprivate.h b/src/H5Tprivate.h index 17cdc49..9171e1e 100644 --- a/src/H5Tprivate.h +++ b/src/H5Tprivate.h @@ -27,9 +27,9 @@ typedef struct H5T_t H5T_t; #include "H5MMpublic.h" /* Memory management */ /* Private headers needed by this file */ -#include "H5private.h" /* Generic Functions */ -#include "H5Gprivate.h" /* Groups */ -#include "H5Rprivate.h" /* References */ +#include "H5private.h" /* Generic Functions */ +#include "H5Gprivate.h" /* Groups */ +#include "H5Rprivate.h" /* References */ /* Macro for size of temporary buffers to contain a single element */ #define H5T_ELEM_BUF_SIZE 256 diff --git a/src/H5private.h b/src/H5private.h index ca4ebcf..2f33cff 100644 --- a/src/H5private.h +++ b/src/H5private.h @@ -53,7 +53,6 @@ # include <limits.h> # include <math.h> # include <signal.h> -# include <stdarg.h> # include <stdio.h> # include <stdlib.h> # include <string.h> @@ -1688,25 +1687,25 @@ extern char *strdup(const char *s); * information about the package in H5_init_library(). */ typedef enum { - H5_PKG_A, /*Attributes */ - H5_PKG_AC, /*Meta data cache */ - H5_PKG_B, /*B-trees */ - H5_PKG_D, /*Datasets */ - H5_PKG_E, /*Error handling */ - H5_PKG_F, /*Files */ - H5_PKG_G, /*Groups */ - H5_PKG_HG, /*Global heap */ - H5_PKG_HL, /*Local heap */ - H5_PKG_I, /*Interface */ - H5_PKG_MF, /*File memory management */ - H5_PKG_MM, /*Core memory management */ - H5_PKG_O, /*Object headers */ - H5_PKG_P, /*Property lists */ - H5_PKG_S, /*Data spaces */ - H5_PKG_T, /*Data types */ - H5_PKG_V, /*Vector functions */ - H5_PKG_Z, /*Raw data filters */ - H5_NPKGS /*Must be last */ + H5_PKG_A, /* Attributes */ + H5_PKG_AC, /* Metadata cache */ + H5_PKG_B, /* B-trees */ + H5_PKG_D, /* Datasets */ + H5_PKG_E, /* Error handling */ + H5_PKG_F, /* Files */ + H5_PKG_G, /* Groups */ + H5_PKG_HG, /* Global heaps */ + H5_PKG_HL, /* Local heaps */ + H5_PKG_I, /* IDs */ + H5_PKG_MF, /* File memory management */ + H5_PKG_MM, /* Core memory management */ + H5_PKG_O, /* Object headers */ + H5_PKG_P, /* Property lists */ + H5_PKG_S, /* Dataspaces */ + H5_PKG_T, /* Datatypes */ + H5_PKG_V, /* Vector functions */ + H5_PKG_Z, /* Raw data filters */ + H5_NPKGS /* Must be last */ } H5_pkg_t; typedef struct H5_debug_open_stream_t { @@ -1735,76 +1734,90 @@ extern H5_debug_t H5_debug_g; extern char H5libhdf5_settings[]; /* embedded library information */ /*------------------------------------------------------------------------- - * Purpose: These macros are inserted automatically just after the - * FUNC_ENTER() macro of API functions and are used to trace - * application program execution. Unless H5_DEBUG_API has been - * defined they are no-ops. + * Purpose: These macros are inserted automatically just after the + * FUNC_ENTER() macro of API functions and are used to trace + * application program execution. Unless H5_DEBUG_API has been + * defined they are no-ops. * - * Arguments: R - Return type encoded as a string - * T - Argument types encoded as a string - * A0-An - Arguments. The number at the end of the macro name - * indicates the number of arguments. + * Arguments: R - Return type encoded as a string + * T - Argument types encoded as a string + * A0-An - Arguments. The number at the end of the macro name + * indicates the number of arguments. * - * Programmer: Robb Matzke - * - * Modifications: *------------------------------------------------------------------------- */ #ifdef H5_DEBUG_API -#define H5TRACE_DECL const char *RTYPE=NULL; \ - double CALLTIME; -#define H5TRACE0(R,T) RTYPE=R; \ - CALLTIME=H5_trace(NULL,FUNC,T) -#define H5TRACE1(R,T,A0) RTYPE=R; \ - CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0) -#define H5TRACE2(R,T,A0,A1) RTYPE=R; \ - CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1) -#define H5TRACE3(R,T,A0,A1,A2) RTYPE=R; \ - CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2) -#define H5TRACE4(R,T,A0,A1,A2,A3) RTYPE=R; \ - CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3) -#define H5TRACE5(R,T,A0,A1,A2,A3,A4) RTYPE=R; \ - CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3, \ - #A4,A4) -#define H5TRACE6(R,T,A0,A1,A2,A3,A4,A5) RTYPE=R; \ - CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3, \ - #A4,A4,#A5,A5) -#define H5TRACE7(R,T,A0,A1,A2,A3,A4,A5,A6) RTYPE=R; \ - CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3, \ - #A4,A4,#A5,A5,#A6,A6) -#define H5TRACE8(R,T,A0,A1,A2,A3,A4,A5,A6,A7) RTYPE=R; \ - CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3, \ - #A4,A4,#A5,A5,#A6,A6,#A7,A7) -#define H5TRACE9(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8) RTYPE=R; \ - CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3, \ - #A4,A4,#A5,A5,#A6,A6,#A7,A7,#A8,A8) -#define H5TRACE10(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8,A9) RTYPE=R; \ - CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3, \ - #A4,A4,#A5,A5,#A6,A6,#A7,A7,#A8,A8,#A9,A9) -#define H5TRACE11(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8,A9,A10) RTYPE=R; \ - CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3, \ - #A4,A4,#A5,A5,#A6,A6,#A7,A7,#A8,A8,#A9,A9, \ - #A10,A10) -#define H5TRACE_RETURN(V) if (RTYPE) { \ - H5_trace(&CALLTIME,FUNC,RTYPE,NULL,V); \ - RTYPE=NULL; \ - } + +#define H5TRACE_DECL \ + const char *RTYPE = NULL; \ + double CALLTIME; + +#define H5TRACE0(R,T) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T) +#define H5TRACE1(R,T,A0) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0) +#define H5TRACE2(R,T,A0,A1) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1) +#define H5TRACE3(R,T,A0,A1,A2) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2) +#define H5TRACE4(R,T,A0,A1,A2,A3) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3) +#define H5TRACE5(R,T,A0,A1,A2,A3,A4) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3,#A4,A4) +#define H5TRACE6(R,T,A0,A1,A2,A3,A4,A5) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3,#A4,A4,#A5,A5) +#define H5TRACE7(R,T,A0,A1,A2,A3,A4,A5,A6) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3,#A4,A4,#A5,A5,#A6,A6) +#define H5TRACE8(R,T,A0,A1,A2,A3,A4,A5,A6,A7) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3,#A4,A4,#A5,A5,#A6,A6,#A7,A7) +#define H5TRACE9(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3,#A4,A4,#A5,A5,#A6,A6,#A7,A7, \ + #A8,A8) +#define H5TRACE10(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8,A9) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3,#A4,A4,#A5,A5,#A6,A6,#A7,A7, \ + #A8,A8,#A9,A9) +#define H5TRACE11(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8,A9,A10) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3,#A4,A4,#A5,A5,#A6,A6,#A7,A7, \ + #A8,A8,#A9,A9,#A10,A10) +#define H5TRACE12(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8,A9,A10,A11) \ + RTYPE=R; \ + CALLTIME=H5_trace(NULL,FUNC,T,#A0,A0,#A1,A1,#A2,A2,#A3,A3,#A4,A4,#A5,A5,#A6,A6,#A7,A7, \ + #A8,A8,#A9,A9,#A10,A10,#A11,A11) + +#define H5TRACE_RETURN(V) \ + if (RTYPE) { \ + H5_trace(&CALLTIME, FUNC, RTYPE, NULL, V); \ + RTYPE = NULL; \ + } #else -#define H5TRACE_DECL /*void*/ -#define H5TRACE0(R,T) /*void*/ -#define H5TRACE1(R,T,A0) /*void*/ -#define H5TRACE2(R,T,A0,A1) /*void*/ -#define H5TRACE3(R,T,A0,A1,A2) /*void*/ -#define H5TRACE4(R,T,A0,A1,A2,A3) /*void*/ -#define H5TRACE5(R,T,A0,A1,A2,A3,A4) /*void*/ -#define H5TRACE6(R,T,A0,A1,A2,A3,A4,A5) /*void*/ -#define H5TRACE7(R,T,A0,A1,A2,A3,A4,A5,A6) /*void*/ -#define H5TRACE8(R,T,A0,A1,A2,A3,A4,A5,A6,A7) /*void*/ -#define H5TRACE9(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8) /*void*/ -#define H5TRACE10(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8,A9) /*void*/ -#define H5TRACE11(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8,A9,A10) /*void*/ -#define H5TRACE_RETURN(V) /*void*/ -#endif +#define H5TRACE_DECL /*void*/ +#define H5TRACE0(R,T) /*void*/ +#define H5TRACE1(R,T,A0) /*void*/ +#define H5TRACE2(R,T,A0,A1) /*void*/ +#define H5TRACE3(R,T,A0,A1,A2) /*void*/ +#define H5TRACE4(R,T,A0,A1,A2,A3) /*void*/ +#define H5TRACE5(R,T,A0,A1,A2,A3,A4) /*void*/ +#define H5TRACE6(R,T,A0,A1,A2,A3,A4,A5) /*void*/ +#define H5TRACE7(R,T,A0,A1,A2,A3,A4,A5,A6) /*void*/ +#define H5TRACE8(R,T,A0,A1,A2,A3,A4,A5,A6,A7) /*void*/ +#define H5TRACE9(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8) /*void*/ +#define H5TRACE10(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8,A9) /*void*/ +#define H5TRACE11(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8,A9,A10) /*void*/ +#define H5TRACE12(R,T,A0,A1,A2,A3,A4,A5,A6,A7,A8,A9,A10,A11) /*void*/ +#define H5TRACE_RETURN(V) /*void*/ +#endif /* H5_DEBUG_API */ H5_DLL double H5_trace(const double *calltime, const char *func, const char *type, ...); diff --git a/src/H5public.h b/src/H5public.h index 518329f..0094d6e 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -39,6 +39,7 @@ #endif #ifdef H5_STDC_HEADERS # include <limits.h> /*for H5T_NATIVE_CHAR defn in H5Tpublic.h */ +# include <stdarg.h> /*for variadic functions in H5VLpublic.h */ #endif #ifndef __cplusplus # ifdef H5_HAVE_STDINT_H @@ -93,9 +94,9 @@ extern "C" { #define H5_VERS_MAJOR 1 /* For major interface/format changes */ #define H5_VERS_MINOR 10 /* For minor interface/format changes */ #define H5_VERS_RELEASE 2 /* For tweaks, bug-fixes, or development */ -#define H5_VERS_SUBRELEASE "snap4" /* For pre-releases like snap0 */ +#define H5_VERS_SUBRELEASE "snap5" /* For pre-releases like snap0 */ /* Empty string for real releases. */ -#define H5_VERS_INFO "HDF5 library version: 1.10.2-snap4" /* Full version string */ +#define H5_VERS_INFO "HDF5 library version: 1.10.2-snap5" /* Full version string */ #define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ H5_VERS_RELEASE) diff --git a/src/H5trace.c b/src/H5trace.c index 930002f..7bc2724 100644 --- a/src/H5trace.c +++ b/src/H5trace.c @@ -226,9 +226,9 @@ H5_trace(const double *returning, const char *func, const char *type, ...) * name is the null pointer then don't print the argument or the * following `='. This is used for return values. */ - argname = va_arg(ap, char *); /*lint !e64 Type mismatch not really occuring */ + argname = va_arg(ap, char *); if(argname) { - unsigned n = (unsigned)MAX (0, (int)HDstrlen(argname) - 3); /*lint !e666 Allow expression with side effects */ + unsigned n = (unsigned)MAX (0, (int)HDstrlen(argname) - 3); if(!HDstrcmp(argname + n, "_id")) { HDstrncpy(buf, argname, (size_t)MIN((int)sizeof(buf) - 1, n)); @@ -242,7 +242,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) /* The value */ if(ptr) - vp = va_arg(ap, void *); /*lint !e64 Type mismatch not really occuring */ + vp = va_arg(ap, void *); switch(type[0]) { case 'a': if(ptr) { @@ -252,7 +252,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) fprintf(out, "NULL"); } /* end if */ else { - haddr_t addr = va_arg(ap, haddr_t); /*lint !e732 Loss of sign not really occuring */ + haddr_t addr = va_arg(ap, haddr_t); HDfprintf(out, "%a", addr); } /* end else */ @@ -807,7 +807,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) fprintf(out, "NULL"); } /* end if */ else { - H5E_error2_t *error = va_arg(ap, H5E_error2_t *); /*lint !e64 Type mismatch not really occuring */ + H5E_error2_t *error = va_arg(ap, H5E_error2_t *); fprintf(out, "0x%lx", (unsigned long)error); } /* end else */ @@ -1093,7 +1093,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) fprintf(out, "NULL"); } /* end if */ else { - H5G_stat_t *statbuf = va_arg(ap, H5G_stat_t*); /*lint !e64 Type mismatch not really occuring */ + H5G_stat_t *statbuf = va_arg(ap, H5G_stat_t*); fprintf(out, "0x%lx", (unsigned long)statbuf); } @@ -1127,7 +1127,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) fprintf(out, "NULL"); } /* end if */ else { - hsize_t hsize = va_arg(ap, hsize_t); /*lint !e732 Loss of sign not really occuring */ + hsize_t hsize = va_arg(ap, hsize_t); if(H5S_UNLIMITED == hsize) HDfprintf(out, "H5S_UNLIMITED"); @@ -1553,7 +1553,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) fprintf(out, "NULL"); } /* end if */ else { - unsigned iu = va_arg(ap, unsigned); /*lint !e732 Loss of sign not really occuring */ + unsigned iu = va_arg(ap, unsigned); fprintf(out, "%u", iu); asize[argno] = iu; @@ -1797,7 +1797,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) fprintf(out, "NULL"); } /* end if */ else { - hobj_ref_t ref = va_arg(ap, hobj_ref_t); /*lint !e732 Loss of sign not really occuring */ + hobj_ref_t ref = va_arg(ap, hobj_ref_t); HDfprintf(out, "Reference Object=%a", ref); } /* end else */ @@ -1995,7 +1995,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) fprintf(out, "NULL"); } /* end if */ else { - const char *str = va_arg(ap, const char *); /*lint !e64 Type mismatch not really occuring */ + const char *str = va_arg(ap, const char *); fprintf(out, "\"%s\"", str); } /* end else */ @@ -2422,7 +2422,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) fprintf(out, "NULL"); } /* end if */ else { - unsigned long iul = va_arg(ap, unsigned long); /*lint !e732 Loss of sign not really occuring */ + unsigned long iul = va_arg(ap, unsigned long); fprintf(out, "%lu", iul); asize[argno] = (hssize_t)iul; @@ -2446,7 +2446,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) fprintf(out, "NULL"); } /* end if */ else { - unsigned long long iull = va_arg(ap, unsigned long long); /*lint !e732 Loss of sign not really occuring */ + unsigned long long iull = va_arg(ap, unsigned long long); fprintf(out, "%llu", iull); asize[argno] = (hssize_t)iull; @@ -2480,7 +2480,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) fprintf(out, "NULL"); } /* end if */ else { - vp = va_arg (ap, void *); /*lint !e64 Type mismatch not really occuring */ + vp = va_arg (ap, void *); if(vp) fprintf(out, "0x%lx", (unsigned long)vp); @@ -2506,7 +2506,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) fprintf(out, "NULL"); } /* end if */ else { - size_t size = va_arg(ap, size_t); /*lint !e732 Loss of sign not really occuring */ + size_t size = va_arg(ap, size_t); HDfprintf(out, "%Zu", size); asize[argno] = (hssize_t)size; @@ -2553,7 +2553,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) fprintf(out, "NULL"); } /* end if */ else { - H5Z_class2_t *filter = va_arg(ap, H5Z_class2_t*); /*lint !e64 Type mismatch not really occuring */ + H5Z_class2_t *filter = va_arg(ap, H5Z_class2_t*); fprintf(out, "0x%lx", (unsigned long)filter); } /* end else */ @@ -20,35 +20,35 @@ #define _HDF5_H #include "H5public.h" -#include "H5Apublic.h" /* Attributes */ -#include "H5ACpublic.h" /* Metadata cache */ -#include "H5Dpublic.h" /* Datasets */ -#include "H5Epublic.h" /* Errors */ -#include "H5Fpublic.h" /* Files */ -#include "H5FDpublic.h" /* File drivers */ -#include "H5Gpublic.h" /* Groups */ -#include "H5Ipublic.h" /* ID management */ -#include "H5Lpublic.h" /* Links */ -#include "H5MMpublic.h" /* Memory management */ -#include "H5Opublic.h" /* Object headers */ -#include "H5Ppublic.h" /* Property lists */ -#include "H5PLpublic.h" /* Plugins */ -#include "H5Rpublic.h" /* References */ -#include "H5Spublic.h" /* Dataspaces */ -#include "H5Tpublic.h" /* Datatypes */ -#include "H5Zpublic.h" /* Data filters */ +#include "H5Apublic.h" /* Attributes */ +#include "H5ACpublic.h" /* Metadata cache */ +#include "H5Dpublic.h" /* Datasets */ +#include "H5Epublic.h" /* Errors */ +#include "H5Fpublic.h" /* Files */ +#include "H5FDpublic.h" /* File drivers */ +#include "H5Gpublic.h" /* Groups */ +#include "H5Ipublic.h" /* ID management */ +#include "H5Lpublic.h" /* Links */ +#include "H5MMpublic.h" /* Memory management */ +#include "H5Opublic.h" /* Object headers */ +#include "H5Ppublic.h" /* Property lists */ +#include "H5PLpublic.h" /* Plugins */ +#include "H5Rpublic.h" /* References */ +#include "H5Spublic.h" /* Dataspaces */ +#include "H5Tpublic.h" /* Datatypes */ +#include "H5Zpublic.h" /* Data filters */ /* Predefined file drivers */ -#include "H5FDcore.h" /* Files stored entirely in memory */ -#include "H5FDdirect.h" /* Linux direct I/O */ -#include "H5FDfamily.h" /* File families */ -#include "H5FDlog.h" /* sec2 driver with I/O logging (for debugging) */ -#include "H5FDmpi.h" /* MPI-based file drivers */ -#include "H5FDmulti.h" /* Usage-partitioned file family */ -#include "H5FDsec2.h" /* POSIX unbuffered file I/O */ -#include "H5FDstdio.h" /* Standard C buffered I/O */ +#include "H5FDcore.h" /* Files stored entirely in memory */ +#include "H5FDdirect.h" /* Linux direct I/O */ +#include "H5FDfamily.h" /* File families */ +#include "H5FDlog.h" /* sec2 driver with I/O logging (for debugging) */ +#include "H5FDmpi.h" /* MPI-based file drivers */ +#include "H5FDmulti.h" /* Usage-partitioned file family */ +#include "H5FDsec2.h" /* POSIX unbuffered file I/O */ +#include "H5FDstdio.h" /* Standard C buffered I/O */ #ifdef H5_HAVE_WINDOWS -#include "H5FDwindows.h" /* Windows buffered I/O */ +#include "H5FDwindows.h" /* Win32 I/O */ #endif #endif |