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author | Vailin Choi <vchoi@hdfgroup.org> | 2012-06-07 16:04:56 (GMT) |
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committer | Vailin Choi <vchoi@hdfgroup.org> | 2012-06-07 16:04:56 (GMT) |
commit | 73db2056a31348fa4c0b14898c5ba66ab214021f (patch) | |
tree | d3f4d6e50e790019647684df731be21bb9b99132 /src | |
parent | a6d41f7a75a8f16e6e0efbcf5efc428299c85483 (diff) | |
download | hdf5-73db2056a31348fa4c0b14898c5ba66ab214021f.zip hdf5-73db2056a31348fa4c0b14898c5ba66ab214021f.tar.gz hdf5-73db2056a31348fa4c0b14898c5ba66ab214021f.tar.bz2 |
[svn-r22444] (1) fix for making MEM_GHEAP as MEM_DRAW
(2) fix to extend into the aggregator based on threshold
(3) fix for the "flavor" logging problem
(4) fix for test failures due to the above fixes
(5) bug fix for h5stat when h5stat against a non-existing file
Diffstat (limited to 'src')
-rw-r--r-- | src/H5FDlog.c | 19 | ||||
-rw-r--r-- | src/H5FDmulti.c | 3 | ||||
-rw-r--r-- | src/H5FDpublic.h | 2 | ||||
-rw-r--r-- | src/H5Faccum.c | 27 | ||||
-rw-r--r-- | src/H5MF.c | 20 | ||||
-rw-r--r-- | src/H5MFaggr.c | 93 |
6 files changed, 121 insertions, 43 deletions
diff --git a/src/H5FDlog.c b/src/H5FDlog.c index 0b5c677..b2c6398 100644 --- a/src/H5FDlog.c +++ b/src/H5FDlog.c @@ -1022,12 +1022,29 @@ H5FD_log_get_eoa(const H5FD_t *_file, H5FD_mem_t UNUSED type) *------------------------------------------------------------------------- */ static herr_t -H5FD_log_set_eoa(H5FD_t *_file, H5FD_mem_t UNUSED type, haddr_t addr) +H5FD_log_set_eoa(H5FD_t *_file, H5FD_mem_t type, haddr_t addr) { H5FD_log_t *file = (H5FD_log_t *)_file; FUNC_ENTER_NOAPI_NOINIT_NOERR + if(file->fa.flags != 0) { + if(H5F_addr_gt(addr, file->eoa) && H5F_addr_gt(addr, 0)) { + hsize_t size = addr - file->eoa; + + /* Retain the flavor of the space allocated by the extension */ + if(file->fa.flags & H5FD_LOG_FLAVOR) { + HDassert(addr < file->iosize); + H5_CHECK_OVERFLOW(size, hsize_t, size_t); + HDmemset(&file->flavor[file->eoa], (int)type, (size_t)size); + } /* end if */ + + /* Log the extension like an allocation */ + if(file->fa.flags & H5FD_LOG_ALLOC) + HDfprintf(file->logfp, "%10a-%10a (%10Hu bytes) (%s) Allocated\n", file->eoa, addr, size, flavors[type]); + } /* end if */ + } /* end if */ + file->eoa = addr; FUNC_LEAVE_NOAPI(SUCCEED) diff --git a/src/H5FDmulti.c b/src/H5FDmulti.c index 5751596..b1d312f 100644 --- a/src/H5FDmulti.c +++ b/src/H5FDmulti.c @@ -309,7 +309,8 @@ H5Pset_fapl_split(hid_t fapl, const char *meta_ext, hid_t meta_plist_id, /* Initialize */ ALL_MEMBERS(mt) { - memb_map[mt] = (H5FD_MEM_DRAW==mt?mt:H5FD_MEM_SUPER); + /* Treat global heap as raw data, not metadata */ + memb_map[mt] = ((mt == H5FD_MEM_DRAW || mt == H5FD_MEM_GHEAP) ? H5FD_MEM_DRAW : H5FD_MEM_SUPER); memb_fapl[mt] = -1; memb_name[mt] = NULL; memb_addr[mt] = HADDR_UNDEF; diff --git a/src/H5FDpublic.h b/src/H5FDpublic.h index ab19c68..5f70f71 100644 --- a/src/H5FDpublic.h +++ b/src/H5FDpublic.h @@ -133,7 +133,7 @@ typedef enum H5F_mem_t H5FD_mem_t; H5FD_MEM_SUPER, /*super*/ \ H5FD_MEM_SUPER, /*btree*/ \ H5FD_MEM_DRAW, /*draw*/ \ - H5FD_MEM_SUPER, /*gheap*/ \ + H5FD_MEM_DRAW, /*gheap*/ \ H5FD_MEM_SUPER, /*lheap*/ \ H5FD_MEM_SUPER /*ohdr*/ \ } diff --git a/src/H5Faccum.c b/src/H5Faccum.c index 3c72c5d..0e549fa 100644 --- a/src/H5Faccum.c +++ b/src/H5Faccum.c @@ -115,6 +115,7 @@ herr_t H5F_accum_read(const H5F_t *f, hid_t dxpl_id, H5FD_mem_t type, haddr_t addr, size_t size, void *buf/*out*/) { + H5FD_mem_t map_type; /* Mapped memory type */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -123,8 +124,11 @@ H5F_accum_read(const H5F_t *f, hid_t dxpl_id, H5FD_mem_t type, haddr_t addr, HDassert(f->shared); HDassert(buf); + /* Treat global heap as raw data */ + map_type = (type == H5FD_MEM_GHEAP) ? H5FD_MEM_DRAW : type; + /* Check if this information is in the metadata accumulator */ - if((f->shared->feature_flags & H5FD_FEAT_ACCUMULATE_METADATA) && type != H5FD_MEM_DRAW) { + if((f->shared->feature_flags & H5FD_FEAT_ACCUMULATE_METADATA) && map_type != H5FD_MEM_DRAW) { if(size < H5F_ACCUM_MAX_SIZE) { /* Sanity check */ HDassert(!f->shared->accum.buf || (f->shared->accum.alloc_size >= f->shared->accum.size)); @@ -173,7 +177,7 @@ H5F_accum_read(const H5F_t *f, hid_t dxpl_id, H5FD_mem_t type, haddr_t addr, f->shared->accum.dirty_off += amount_before; /* Dispatch to driver */ - if(H5FD_read(f->shared->lf, dxpl_id, type, addr, amount_before, f->shared->accum.buf) < 0) + if(H5FD_read(f->shared->lf, dxpl_id, map_type, addr, amount_before, f->shared->accum.buf) < 0) HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "driver read request failed") } /* end if */ else @@ -187,7 +191,7 @@ H5F_accum_read(const H5F_t *f, hid_t dxpl_id, H5FD_mem_t type, haddr_t addr, H5_ASSIGN_OVERFLOW(amount_after, ((addr + size) - (f->shared->accum.loc + f->shared->accum.size)), hsize_t, size_t); /* Dispatch to driver */ - if(H5FD_read(f->shared->lf, dxpl_id, type, (f->shared->accum.loc + f->shared->accum.size), amount_after, (f->shared->accum.buf + f->shared->accum.size + amount_before)) < 0) + if(H5FD_read(f->shared->lf, dxpl_id, map_type, (f->shared->accum.loc + f->shared->accum.size), amount_after, (f->shared->accum.buf + f->shared->accum.size + amount_before)) < 0) HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "driver read request failed") } /* end if */ @@ -201,13 +205,13 @@ H5F_accum_read(const H5F_t *f, hid_t dxpl_id, H5FD_mem_t type, haddr_t addr, /* Current read doesn't overlap with metadata accumulator, read it from file */ else { /* Dispatch to driver */ - if(H5FD_read(f->shared->lf, dxpl_id, type, addr, size, buf) < 0) + if(H5FD_read(f->shared->lf, dxpl_id, map_type, addr, size, buf) < 0) HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "driver read request failed") } /* end else */ } /* end if */ else { /* Read the data */ - if(H5FD_read(f->shared->lf, dxpl_id, type, addr, size, buf) < 0) + if(H5FD_read(f->shared->lf, dxpl_id, map_type, addr, size, buf) < 0) HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "driver read request failed") /* Check for overlap w/dirty accumulator */ @@ -250,7 +254,7 @@ H5F_accum_read(const H5F_t *f, hid_t dxpl_id, H5FD_mem_t type, haddr_t addr, } /* end if */ else { /* Read the data */ - if(H5FD_read(f->shared->lf, dxpl_id, type, addr, size, buf) < 0) + if(H5FD_read(f->shared->lf, dxpl_id, map_type, addr, size, buf) < 0) HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "driver read request failed") } /* end else */ @@ -415,6 +419,7 @@ herr_t H5F_accum_write(const H5F_t *f, hid_t dxpl_id, H5FD_mem_t type, haddr_t addr, size_t size, const void *buf) { + H5FD_mem_t map_type; /* Mapped memory type */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -424,8 +429,11 @@ H5F_accum_write(const H5F_t *f, hid_t dxpl_id, H5FD_mem_t type, haddr_t addr, HDassert(f->intent & H5F_ACC_RDWR); HDassert(buf); + /* Treat global heap as raw data */ + map_type = (type == H5FD_MEM_GHEAP) ? H5FD_MEM_DRAW : type; + /* Check for accumulating metadata */ - if((f->shared->feature_flags & H5FD_FEAT_ACCUMULATE_METADATA) && type != H5FD_MEM_DRAW) { + if((f->shared->feature_flags & H5FD_FEAT_ACCUMULATE_METADATA) && map_type != H5FD_MEM_DRAW) { if(size < H5F_ACCUM_MAX_SIZE) { /* Sanity check */ HDassert(!f->shared->accum.buf || (f->shared->accum.alloc_size >= f->shared->accum.size)); @@ -719,7 +727,7 @@ HDmemset(f->shared->accum.buf + size, 0, (f->shared->accum.alloc_size - size)); } /* end if */ else { /* Write the data */ - if(H5FD_write(f->shared->lf, dxpl_id, type, addr, size, buf) < 0) + if(H5FD_write(f->shared->lf, dxpl_id, map_type, addr, size, buf) < 0) HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "file write failed") /* Check for overlap w/accumulator */ @@ -804,7 +812,7 @@ HDmemset(f->shared->accum.buf + size, 0, (f->shared->accum.alloc_size - size)); } /* end if */ else { /* Write the data */ - if(H5FD_write(f->shared->lf, dxpl_id, type, addr, size, buf) < 0) + if(H5FD_write(f->shared->lf, dxpl_id, map_type, addr, size, buf) < 0) HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "file write failed") } /* end else */ @@ -846,6 +854,7 @@ H5F_accum_free(H5F_t *f, hid_t dxpl_id, H5FD_mem_t UNUSED type, haddr_t addr, /* Sanity check */ /* (The metadata accumulator should not intersect w/raw data */ HDassert(H5FD_MEM_DRAW != type); + HDassert(H5FD_MEM_GHEAP != type); /* (global heap data is being treated as raw data currently) */ /* Check for overlapping the beginning of the accumulator */ if(H5F_addr_le(addr, f->shared->accum.loc)) { @@ -160,7 +160,8 @@ H5MF_init_merge_flags(H5F_t *f) all_metadata_same = TRUE; for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) /* Skip checking raw data free list mapping */ - if(type != H5FD_MEM_DRAW) { + /* (global heap is treated as raw data) */ + if(type != H5FD_MEM_DRAW && type != H5FD_MEM_GHEAP) { /* Check for any different type mappings */ if(f->shared->fs_type_map[type] != f->shared->fs_type_map[H5FD_MEM_SUPER]) { all_metadata_same = FALSE; @@ -183,9 +184,12 @@ H5MF_init_merge_flags(H5F_t *f) HDmemset(f->shared->fs_aggr_merge, 0, sizeof(f->shared->fs_aggr_merge)); /* Check if merging raw data should be allowed */ + /* (treat global heaps as raw data) */ if(H5FD_MEM_DRAW == f->shared->fs_type_map[H5FD_MEM_DRAW] || - H5FD_MEM_DEFAULT == f->shared->fs_type_map[H5FD_MEM_DRAW]) + H5FD_MEM_DEFAULT == f->shared->fs_type_map[H5FD_MEM_DRAW]) { f->shared->fs_aggr_merge[H5FD_MEM_DRAW] = H5F_FS_MERGE_RAWDATA; + f->shared->fs_aggr_merge[H5FD_MEM_GHEAP] = H5F_FS_MERGE_RAWDATA; + } /* end if */ break; case H5MF_AGGR_MERGE_DICHOTOMY: @@ -193,7 +197,9 @@ H5MF_init_merge_flags(H5F_t *f) HDmemset(f->shared->fs_aggr_merge, H5F_FS_MERGE_METADATA, sizeof(f->shared->fs_aggr_merge)); /* Allow merging raw data allocations together */ + /* (treat global heaps as raw data) */ f->shared->fs_aggr_merge[H5FD_MEM_DRAW] = H5F_FS_MERGE_RAWDATA; + f->shared->fs_aggr_merge[H5FD_MEM_GHEAP] = H5F_FS_MERGE_RAWDATA; break; case H5MF_AGGR_MERGE_TOGETHER: @@ -744,6 +750,7 @@ H5MF_try_extend(H5F_t *f, hid_t dxpl_id, H5FD_mem_t alloc_type, haddr_t addr, hsize_t size, hsize_t extra_requested) { haddr_t end; /* End of block to extend */ + H5FD_mem_t map_type; /* Mapped type */ htri_t ret_value; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -755,18 +762,21 @@ HDfprintf(stderr, "%s: Entering: alloc_type = %u, addr = %a, size = %Hu, extra_r HDassert(f); HDassert(H5F_INTENT(f) & H5F_ACC_RDWR); + /* Set mapped type, treating global heap as raw data */ + map_type = (alloc_type == H5FD_MEM_GHEAP) ? H5FD_MEM_DRAW : alloc_type; + /* Compute end of block to extend */ end = addr + size; /* Check if the block is exactly at the end of the file */ - if((ret_value = H5FD_try_extend(f->shared->lf, alloc_type, f, end, extra_requested)) < 0) + if((ret_value = H5FD_try_extend(f->shared->lf, map_type, f, end, extra_requested)) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTEXTEND, FAIL, "error extending file") else if(ret_value == FALSE) { H5F_blk_aggr_t *aggr; /* Aggregator to use */ /* Check for test block able to extend aggregation block */ - aggr = (alloc_type == H5FD_MEM_DRAW) ? &(f->shared->sdata_aggr) : &(f->shared->meta_aggr); - if((ret_value = H5MF_aggr_try_extend(f, aggr, alloc_type, end, extra_requested)) < 0) + aggr = (map_type == H5FD_MEM_DRAW) ? &(f->shared->sdata_aggr) : &(f->shared->meta_aggr); + if((ret_value = H5MF_aggr_try_extend(f, aggr, map_type, end, extra_requested)) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTEXTEND, FAIL, "error extending aggregation block") else if(ret_value == FALSE) { H5FD_mem_t fs_type; /* Free space type (mapped from allocation type) */ diff --git a/src/H5MFaggr.c b/src/H5MFaggr.c index b3a06ff..6f68fd7 100644 --- a/src/H5MFaggr.c +++ b/src/H5MFaggr.c @@ -46,6 +46,7 @@ /******************/ /* Local Typedefs */ /******************/ +#define EXTEND_THRESHOLD .10 /********************/ @@ -108,14 +109,14 @@ HDfprintf(stderr, "%s: alloc_type = %u, size = %Hu\n", FUNC, (unsigned)alloc_typ HDassert(size > 0); /* Couldn't find anything from the free space manager, go allocate some */ - if(alloc_type != H5FD_MEM_DRAW) { + if(alloc_type != H5FD_MEM_DRAW && alloc_type != H5FD_MEM_GHEAP) { /* Handle metadata differently from "raw" data */ if(HADDR_UNDEF == (ret_value = H5MF_aggr_alloc(f, dxpl_id, &(f->shared->meta_aggr), &(f->shared->sdata_aggr), alloc_type, size))) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't allocate metadata") } /* end if */ else { - /* Allocate "raw" data */ - if(HADDR_UNDEF == (ret_value = H5MF_aggr_alloc(f, dxpl_id, &(f->shared->sdata_aggr), &(f->shared->meta_aggr), alloc_type, size))) + /* Allocate "raw" data: H5FD_MEM_DRAW and H5FD_MEM_GHEAP */ + if(HADDR_UNDEF == (ret_value = H5MF_aggr_alloc(f, dxpl_id, &(f->shared->sdata_aggr), &(f->shared->meta_aggr), H5FD_MEM_DRAW, size))) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't allocate raw data") } /* end else */ @@ -242,7 +243,7 @@ HDfprintf(stderr, "%s: aggr = {%a, %Hu, %Hu}\n", FUNC, aggr->addr, aggr->tot_siz } /* end if */ /* Allocate space from the VFD (i.e. at the end of the file) */ - if(HADDR_UNDEF == (ret_value = H5FD_alloc(f->shared->lf, dxpl_id, type, f, size, &eoa_frag_addr, &eoa_frag_size))) + if(HADDR_UNDEF == (ret_value = H5FD_alloc(f->shared->lf, dxpl_id, alloc_type, f, size, &eoa_frag_addr, &eoa_frag_size))) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't allocate aggregation block") } /* end else */ } /* end if */ @@ -307,12 +308,12 @@ HDfprintf(stderr, "%s: Allocating block\n", FUNC); /* Freeing any possible fragment due to file allocation */ if(eoa_frag_size) - if(H5MF_xfree(f, type, dxpl_id, eoa_frag_addr, eoa_frag_size) < 0) + if(H5MF_xfree(f, alloc_type, dxpl_id, eoa_frag_addr, eoa_frag_size) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free eoa fragment") /* Freeing any possible fragment due to alignment in the block after extension */ if(extended && aggr_frag_size) - if(H5MF_xfree(f, type, dxpl_id, aggr_frag_addr, aggr_frag_size) < 0) + if(H5MF_xfree(f, alloc_type, dxpl_id, aggr_frag_addr, aggr_frag_size) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free aggregation fragment") } /* end if */ else { @@ -323,7 +324,7 @@ HDfprintf(stderr, "%s: Allocating block\n", FUNC); /* free any possible fragment */ if(aggr_frag_size) - if(H5MF_xfree(f, type, dxpl_id, aggr_frag_addr, aggr_frag_size) < 0) + if(H5MF_xfree(f, alloc_type, dxpl_id, aggr_frag_addr, aggr_frag_size) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free aggregation fragment") } /* end else */ } /* end if */ @@ -364,6 +365,16 @@ HDfprintf(stderr, "%s: ret_value = %a\n", FUNC, ret_value); * Purpose: Check if a block is inside an aggregator block and extend it * if possible. * + * Note: + * When the block to be extended adjoins the aggregator-- + * 1) When the aggregator is at end of file: + * A) If the request is below the threshold, extend the block into the aggregator + * B) If the request is above the threshold, + * a) extend the aggregator by aggr->alloc_size or the extended amount + * b) extend the block into the aggregator + * 2) When the aggregator is not at end of file: + * Extended the block into the aggregator if it has enough space to satisfy the request + * * Return: Success: TRUE(1) - Block was extended * FALSE(0) - Block could not be extended * Failure: FAIL @@ -388,26 +399,56 @@ H5MF_aggr_try_extend(H5F_t *f, H5F_blk_aggr_t *aggr, H5FD_mem_t type, /* Check if this aggregator is active */ if(f->shared->feature_flags & aggr->feature_flag) { - /* If the block being tested adjoins the beginning of the aggregator + /* + * If the block being tested adjoins the beginning of the aggregator * block, check if the aggregator can accomodate the extension. */ if(H5F_addr_eq(blk_end, aggr->addr)) { - /* If the aggregator block is at the end of the file, extend the - * file and "bubble" the aggregator up - */ - if((ret_value = H5FD_try_extend(f->shared->lf, type, f, (aggr->addr + aggr->size), extra_requested)) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTEXTEND, FAIL, "error extending file") - else if(ret_value == TRUE) { - /* Shift the aggregator block by the extra requested */ - aggr->addr += extra_requested; - - /* Add extra requested to the aggregator block's total amount allocated */ - aggr->tot_size += extra_requested; - } /* end if */ - else { - /* Check if the aggregator block has enough internal space to satisfy - * extending the block. - */ + haddr_t eoa; /* EOA for the file */ + + /* Get the EOA for the file */ + if(HADDR_UNDEF == (eoa = H5F_get_eoa(f, type))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "Unable to get eoa") + + /* If the aggregator is at the end of file: */ + if(H5F_addr_eq(eoa, aggr->addr + aggr->size)) { + /* If extra_requested is below percentage threshold, extend block into the aggregator. */ + if(extra_requested <= (EXTEND_THRESHOLD * aggr->size)) { + aggr->size -= extra_requested; + aggr->addr += extra_requested; + + /* Indicate success */ + HGOTO_DONE(TRUE); + } + /* + * If extra_requested is above percentage threshold: + * 1) "bubble" up the aggregator by aggr->alloc_size or extra_requested + * 2) extend the block into the aggregator + */ + else { + hsize_t extra = (extra_requested < aggr->alloc_size) ? aggr->alloc_size : extra_requested; + + if((ret_value = H5FD_try_extend(f->shared->lf, type, f, (aggr->addr + aggr->size), extra)) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTEXTEND, FAIL, "error extending file") + else if(ret_value == TRUE) { + /* Shift the aggregator block by the extra requested */ + /* (allocates the space for the extra_requested) */ + aggr->addr += extra_requested; + + /* Add extra to the aggregator's total allocated amount */ + aggr->tot_size += extra; + + /* Account for any space added to the aggregator */ + /* (either 0 (if extra_requested > aggr->alloc_size) or + * (aggr->alloc_size - extra_requested) -QAK + */ + aggr->size += extra; + aggr->size -= extra_requested; + } /* end if */ + } /* end if */ + } /* end if */ + else { /* The aggreator is not at end of file */ + /* Check if aggregator has enough internal space to satisfy the extension. */ if(aggr->size >= extra_requested) { /* Extend block into aggregator */ aggr->size -= extra_requested; @@ -416,8 +457,8 @@ H5MF_aggr_try_extend(H5F_t *f, H5F_blk_aggr_t *aggr, H5FD_mem_t type, /* Indicate success */ HGOTO_DONE(TRUE); } /* end if */ - } /* end else */ - } /* end if */ + } /* end else */ + } /* end if */ } /* end if */ done: |