diff options
| author | Mohamad Chaarawi <chaarawi@hdfgroup.org> | 2015-04-03 21:41:28 (GMT) |
|---|---|---|
| committer | Mohamad Chaarawi <chaarawi@hdfgroup.org> | 2015-04-03 21:41:28 (GMT) |
| commit | 5630846ea34f29b45aecdb431f846327c4fde9e1 (patch) | |
| tree | 83e65a0feb757f39472e70d2168048d091cfed50 /src | |
| parent | 820b4dc39136072bccad1455fc0232ec9e710d58 (diff) | |
| parent | b9e5e2af4e31b0a60c2d2f6421fb1b3cb9aa0564 (diff) | |
| download | hdf5-5630846ea34f29b45aecdb431f846327c4fde9e1.zip hdf5-5630846ea34f29b45aecdb431f846327c4fde9e1.tar.gz hdf5-5630846ea34f29b45aecdb431f846327c4fde9e1.tar.bz2 | |
[svn-r26724] - merge from trunk & fix conflicts.
- fix bug in opending an already open named datatype.
- fix dynamically loaded VOL plugin support with new changes coming in.
Diffstat (limited to 'src')
89 files changed, 1520 insertions, 1530 deletions
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt index a137506..56315bd 100644 --- a/src/CMakeLists.txt +++ b/src/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 2.8.11) +cmake_minimum_required (VERSION 3.1.0) PROJECT (HDF5_SRC C CXX) #----------------------------------------------------------------------------- @@ -486,6 +486,7 @@ set (H5PL_SRCS set (H5PL_HDRS ${HDF5_SRC_DIR}/H5PLextern.h + ${HDF5_SRC_DIR}/H5PLpublic.h ) IDE_GENERATED_PROPERTIES ("H5PL" "${H5PL_HDRS}" "${H5PL_SRCS}" ) @@ -788,14 +789,14 @@ set (H5_PRIVATE_HEADERS # specific type checks inside #----------------------------------------------------------------------------- #add_executable (H5detect ${HDF5_SRC_DIR}/H5detect.c) -#TARGET_C_PROPERTIES (H5detect " " " ") +#TARGET_C_PROPERTIES (H5detect STATIC " " " ") IF (CMAKE_COMPILER_IS_GNUCC OR CMAKE_COMPILER_IS_GNUCXX) SET (LOCAL_OPT_FLAG "-O0") ELSE (CMAKE_COMPILER_IS_GNUCC OR CMAKE_COMPILER_IS_GNUCXX) SET (LOCAL_OPT_FLAG " ") ENDIF (CMAKE_COMPILER_IS_GNUCC OR CMAKE_COMPILER_IS_GNUCXX) ADD_EXECUTABLE (H5detect ${HDF5_SRC_DIR}/H5detect.c) -TARGET_C_PROPERTIES (H5detect ${LOCAL_OPT_FLAG} " ") +TARGET_C_PROPERTIES (H5detect STATIC ${LOCAL_OPT_FLAG} " ") if (MSVC OR MINGW) target_link_libraries (H5detect "ws2_32.lib") @@ -810,7 +811,7 @@ add_custom_command ( ) add_executable (H5make_libsettings ${HDF5_SRC_DIR}/H5make_libsettings.c) -TARGET_C_PROPERTIES (H5make_libsettings " " " ") +TARGET_C_PROPERTIES (H5make_libsettings STATIC " " " ") if (MSVC OR MINGW) target_link_libraries (H5make_libsettings "ws2_32.lib") endif (MSVC OR MINGW) @@ -877,7 +878,7 @@ set (common_SRCS ${common_SRCS} ${HDF5_BINARY_DIR}/H5overflow.h) set_source_files_properties (${HDF5_BINARY_DIR}/H5overflow.h GENERATED) add_library (${HDF5_LIB_TARGET} ${LIB_TYPE} ${common_SRCS} ${H5_PUBLIC_HEADERS} ${H5_PRIVATE_HEADERS}) -TARGET_C_PROPERTIES (${HDF5_LIB_TARGET} " " " ") +TARGET_C_PROPERTIES (${HDF5_LIB_TARGET} ${LIB_TYPE} " " " ") target_link_libraries (${HDF5_LIB_TARGET} ${LINK_LIBS}) if (NOT WIN32) target_link_libraries (${HDF5_LIB_TARGET} dl) @@ -52,7 +52,9 @@ /* Local Prototypes */ /********************/ static void H5_debug_mask(const char*); - +#ifdef H5_HAVE_PARALLEL +static int H5_mpi_delete_cb(MPI_Comm comm, int keyval, void *attr_val, int *flag); +#endif /*H5_HAVE_PARALLEL*/ /*********************/ /* Package Variables */ @@ -109,6 +111,43 @@ H5_init_library(void) herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI(FAIL) + +#ifdef H5_HAVE_PARALLEL + { + int mpi_initialized; + int mpi_code; + + MPI_Initialized(&mpi_initialized); + +#ifdef H5_HAVE_MPE + /* Initialize MPE instrumentation library. */ + if (!H5_MPEinit_g) + { + int mpe_code; + if (mpi_initialized){ + mpe_code = MPE_Init_log(); + HDassert(mpe_code >=0); + H5_MPEinit_g = TRUE; + } + } +#endif /*H5_HAVE_MPE*/ + + /* add an attribute on MPI_COMM_SELF to call H5_term_library + when it is destroyed, i.e. on MPI_Finalize */ + if (mpi_initialized) { + int key_val; + + if(MPI_SUCCESS != (mpi_code = MPI_Comm_create_keyval(MPI_NULL_COPY_FN, + (MPI_Comm_delete_attr_function *)H5_mpi_delete_cb, + &key_val, NULL))) + HMPI_GOTO_ERROR(FAIL, "MPI_Comm_create_keyval failed", mpi_code) + + if(MPI_SUCCESS != (mpi_code = MPI_Comm_set_attr(MPI_COMM_SELF, key_val, NULL))) + HMPI_GOTO_ERROR(FAIL, "MPI_Comm_set_attr failed", mpi_code) + } + } +#endif /*H5_HAVE_PARALLEL*/ + /* * Make sure the package information is updated. */ @@ -133,24 +172,6 @@ H5_init_library(void) H5_debug_g.pkg[H5_PKG_VL].name = "vl"; H5_debug_g.pkg[H5_PKG_Z].name = "z"; -#ifdef H5_HAVE_MPE - /* Initialize MPE instrumentation library. May need to move this - * up earlier if any of the above initialization involves using - * the instrumentation code. - */ - if (!H5_MPEinit_g) - { - int mpe_code; - int mpi_initialized; - MPI_Initialized(&mpi_initialized); - if (mpi_initialized){ - mpe_code = MPE_Init_log(); - HDassert(mpe_code >=0); - H5_MPEinit_g = TRUE; - } - } -#endif - /* * Install atexit() library cleanup routines unless the H5dont_atexit() * has been called. Once we add something to the atexit() list it stays @@ -584,6 +605,27 @@ H5_debug_mask(const char *s) } } /* end H5_debug_mask() */ +#ifdef H5_HAVE_PARALLEL + +/*------------------------------------------------------------------------- + * Function: H5_mpi_delete_cb + * + * Purpose: Callback attribute on MPI_COMM_SELF to terminate the HDF5 + * library when the communicator is destroyed, i.e. on MPI_Finalize. + * + * Return: MPI_SUCCESS + * + * Programmer: Mohamad Chaarawi, February 2015 + * + *------------------------------------------------------------------------- + */ +static int H5_mpi_delete_cb(MPI_Comm UNUSED comm, int UNUSED keyval, void UNUSED *attr_val, int UNUSED *flag) +{ + H5_term_library(); + return MPI_SUCCESS; +} +#endif /*H5_HAVE_PARALLEL*/ + /*------------------------------------------------------------------------- * Function: H5get_libversion @@ -822,27 +864,109 @@ H5close(void) /*------------------------------------------------------------------------- + * Function: H5allocate_memory + * + * Purpose: Allocate a memory buffer with the semantics of malloc(). + * + * NOTE: This function is intended for use with filter + * plugins so that all allocation and free operations + * use the same memory allocator. It is not intended for + * use as a general memory allocator in applications. + * + * Parameters: + * + * size: The size of the buffer. + * + * clear: Whether or not to memset the buffer to 0. + * + * Return: + * + * Success: A pointer to the allocated buffer. + * + * Failure: NULL + * + *------------------------------------------------------------------------- + */ +void * +H5allocate_memory(size_t size, hbool_t clear) +{ + void *ret_value = NULL; + + FUNC_ENTER_API_NOINIT; + H5TRACE2("*x", "zb", size, clear); + + if(clear) + ret_value = H5MM_calloc(size); + else + ret_value = H5MM_malloc(size); + + FUNC_LEAVE_API(ret_value) + +} /* end H5allocate_memory() */ + + +/*------------------------------------------------------------------------- + * Function: H5resize_memory + * + * Purpose: Resize a memory buffer with the semantics of realloc(). + * + * NOTE: This function is intended for use with filter + * plugins so that all allocation and free operations + * use the same memory allocator. It is not intended for + * use as a general memory allocator in applications. + * + * Parameters: + * + * mem: The buffer to be resized. + * + * size: The size of the buffer. + * + * Return: + * + * Success: A pointer to the resized buffer. + * + * Failure: NULL (the input buffer will be unchanged) + * + *------------------------------------------------------------------------- + */ +void * +H5resize_memory(void *mem, size_t size) +{ + void *ret_value = NULL; + + FUNC_ENTER_API_NOINIT; + H5TRACE2("*x", "*xz", mem, size); + + ret_value = H5MM_realloc(mem, size); + + FUNC_LEAVE_API(ret_value) + +} /* end H5resize_memory() */ + + +/*------------------------------------------------------------------------- * Function: H5free_memory * - * Purpose: Frees memory allocated by the library that it is the user's + * Purpose: Frees memory allocated by the library that it is the user's * responsibility to free. Ensures that the same library * that was used to allocate the memory frees it. Passing * NULL pointers is allowed. * - * Return: SUCCEED/FAIL + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t H5free_memory(void *mem) { - FUNC_ENTER_API_NOINIT + FUNC_ENTER_API_NOINIT; H5TRACE1("e", "*x", mem); /* At this time, it is impossible for this to fail. */ HDfree(mem); FUNC_LEAVE_API(SUCCEED) + } /* end H5free_memory() */ @@ -906,3 +1030,4 @@ DllMain(_In_ HINSTANCE hinstDLL, _In_ DWORD fdwReason, _In_ LPVOID lpvReserved) return fOkay; } #endif /* H5_HAVE_WIN32_API && H5_BUILT_AS_DYNAMIC_LIB && H5_HAVE_WIN_THREADS && H5_HAVE_THREADSAFE*/ + @@ -510,22 +510,18 @@ H5B_split(H5F_t *f, hid_t dxpl_id, H5B_ins_ud_t *bt_ud, unsigned idx, bt_ud->bt->nchildren = nleft; /* - * Update sibling pointers. + * Update other sibling pointers. */ split_bt_ud->bt->left = bt_ud->addr; split_bt_ud->bt->right = bt_ud->bt->right; if(H5F_addr_defined(bt_ud->bt->right)) { - H5B_t *tmp_bt; - H5B_cache_ud_t cache_udata2; /* User-data for metadata cache callback */ + H5B_t *tmp_bt; - cache_udata2.f = f; - cache_udata2.type = shared->type; - cache_udata2.rc_shared = bt_ud->bt->rc_shared; - if(NULL == (tmp_bt = (H5B_t *)H5AC_protect(f, dxpl_id, H5AC_BT, bt_ud->bt->right, &cache_udata2, H5AC_WRITE))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to load right sibling") + if(NULL == (tmp_bt = (H5B_t *)H5AC_protect(f, dxpl_id, H5AC_BT, bt_ud->bt->right, &cache_udata, H5AC_WRITE))) + HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to load right sibling") - tmp_bt->left = split_bt_ud->addr; + tmp_bt->left = split_bt_ud->addr; if(H5AC_unprotect(f, dxpl_id, H5AC_BT, bt_ud->bt->right, tmp_bt, H5AC__DIRTIED_FLAG) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, FAIL, "unable to release B-tree node") @@ -539,6 +535,7 @@ done: HDONE_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, FAIL, "unable to release B-tree node") split_bt_ud->bt = NULL; split_bt_ud->addr = HADDR_UNDEF; + split_bt_ud->cache_flags = H5AC__NO_FLAGS_SET; } /* end if */ FUNC_LEAVE_NOAPI(ret_value) @@ -559,8 +556,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5B_insert(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr, - void *udata) +H5B_insert(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr, void *udata) { /* * These are defined this way to satisfy alignment constraints. @@ -609,6 +605,8 @@ H5B_insert(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr, <_key_changed, md_key, udata, rt_key, &rt_key_changed, &split_bt_ud/*out*/)) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, FAIL, "unable to insert key") + + /* Check if the root node split */ if(H5B_INS_NOOP == my_ins) { HDassert(!split_bt_ud.bt); HGOTO_DONE(SUCCEED) @@ -633,7 +631,7 @@ H5B_insert(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr, */ H5_CHECK_OVERFLOW(shared->sizeof_rnode,size_t,hsize_t); if(HADDR_UNDEF == (old_root_addr = H5MF_alloc(f, H5FD_MEM_BTREE, dxpl_id, (hsize_t)shared->sizeof_rnode))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "unable to allocate file space to move root") + HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "unable to allocate file space to move root") /* * Move the node to the new location @@ -641,7 +639,7 @@ H5B_insert(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr, /* Make a copy of the old root information */ if(NULL == (new_root_bt = H5B_copy(bt_ud.bt))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTCOPY, FAIL, "unable to copy old root"); + HGOTO_ERROR(H5E_BTREE, H5E_CANTCOPY, FAIL, "unable to copy old root") /* Unprotect the old root so we can move it. Also force it to be marked * dirty so it is written to the new location. */ @@ -651,7 +649,7 @@ H5B_insert(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr, /* Move the location of the old root on the disk */ if(H5AC_move_entry(f, H5AC_BT, bt_ud.addr, old_root_addr) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTSPLIT, FAIL, "unable to move B-tree root node") + HGOTO_ERROR(H5E_BTREE, H5E_CANTSPLIT, FAIL, "unable to move B-tree root node") bt_ud.addr = old_root_addr; /* Update the split b-tree's left pointer to point to the new location */ @@ -769,7 +767,7 @@ H5B_insert_child(H5B_t *bt, unsigned *bt_flags, unsigned idx, *bt_flags |= H5AC__DIRTIED_FLAG; FUNC_LEAVE_NOAPI(SUCCEED) -} +} /* end H5B_insert_child() */ /*------------------------------------------------------------------------- @@ -1046,6 +1044,10 @@ H5B_insert_helper(H5F_t *f, hid_t dxpl_id, H5B_ins_ud_t *bt_ud, else HDmemcpy(rt_key, H5B_NKEY(bt, shared, idx + 1), type->sizeof_nkey); } /* end if */ + + /* + * Handle changes/additions to children + */ if(H5B_INS_CHANGE == my_ins) { /* * The insertion simply changed the address for the child. @@ -1081,7 +1083,7 @@ H5B_insert_helper(H5F_t *f, hid_t dxpl_id, H5B_ins_ud_t *bt_ud, /* Insert the child */ if(H5B_insert_child(tmp_bt, tmp_bt_flags_ptr, idx, new_child_bt_ud.addr, my_ins, md_key) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "can't insert child") - } + } /* end else-if */ /* * If this node split, return the mid key (the one that is shared @@ -1113,7 +1115,7 @@ done: HDONE_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, H5B_INS_ERROR, "unable to unprotect new child") FUNC_LEAVE_NOAPI(ret_value) -} +} /* end H5B_insert_helper() */ /*------------------------------------------------------------------------- @@ -1134,13 +1136,12 @@ static herr_t H5B_iterate_helper(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr, H5B_operator_t op, void *udata) { - H5B_t *bt = NULL; /* Pointer to current B-tree node */ + H5B_t *bt = NULL; /* Pointer to current B-tree node */ H5UC_t *rc_shared; /* Ref-counted shared info */ H5B_shared_t *shared; /* Pointer to shared B-tree info */ H5B_cache_ud_t cache_udata; /* User-data for metadata cache callback */ - uint8_t *native = NULL; /* Array of keys in native format */ - haddr_t *child = NULL; /* Array of child pointers */ - herr_t ret_value; /* Return value */ + unsigned u; /* Local index variable */ + herr_t ret_value = H5_ITER_CONT; /* Return value */ FUNC_ENTER_NOAPI_NOINIT @@ -1155,7 +1156,7 @@ H5B_iterate_helper(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t add /* Get shared info for B-tree */ if(NULL == (rc_shared = (type->get_shared)(f, udata))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object") + HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object") shared = (H5B_shared_t *)H5UC_GET_OBJ(rc_shared); HDassert(shared); @@ -1164,99 +1165,21 @@ H5B_iterate_helper(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t add cache_udata.type = type; cache_udata.rc_shared = rc_shared; if(NULL == (bt = (H5B_t *)H5AC_protect(f, dxpl_id, H5AC_BT, addr, &cache_udata, H5AC_READ))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, H5_ITER_ERROR, "unable to load B-tree node") - - if(bt->level > 0) { - haddr_t left_child = bt->child[0]; /* Address of left-most child in node */ - - /* Release current node */ - if(H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5AC__NO_FLAGS_SET) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, H5_ITER_ERROR, "unable to release B-tree node") - bt = NULL; - - /* Keep following the left-most child until we reach a leaf node. */ - if((ret_value = H5B_iterate_helper(f, dxpl_id, type, left_child, op, udata)) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTLIST, H5_ITER_ERROR, "unable to list B-tree node") - } /* end if */ - else { - unsigned nchildren; /* Number of child pointers */ - haddr_t next_addr; /* Address of next node to the right */ - - /* Allocate space for a copy of the native records & child pointers */ - if(NULL == (native = H5FL_BLK_MALLOC(native_block, shared->sizeof_keys))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, H5_ITER_ERROR, "memory allocation failed for shared B-tree native records") - if(NULL == (child = H5FL_SEQ_MALLOC(haddr_t, (size_t)shared->two_k))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, H5_ITER_ERROR, "memory allocation failed for shared B-tree child addresses") - - /* Cache information from this node */ - nchildren = bt->nchildren; - next_addr = bt->right; + HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, H5_ITER_ERROR, "unable to load B-tree node") - /* Copy the native keys & child pointers into local arrays */ - HDmemcpy(native, bt->native, shared->sizeof_keys); - HDmemcpy(child, bt->child, (nchildren * sizeof(haddr_t))); - - /* Release current node */ - if(H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5AC__NO_FLAGS_SET) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, H5_ITER_ERROR, "unable to release B-tree node") - bt = NULL; - - /* - * We've reached the left-most leaf. Now follow the right-sibling - * pointer from leaf to leaf until we've processed all leaves. - */ - ret_value = H5_ITER_CONT; - while(ret_value == H5_ITER_CONT) { - haddr_t *curr_child; /* Pointer to node's child addresses */ - uint8_t *curr_native; /* Pointer to node's native keys */ - unsigned u; /* Local index variable */ - - /* - * Perform the iteration operator, which might invoke an - * application callback. - */ - for(u = 0, curr_child = child, curr_native = native; u < nchildren && ret_value == H5_ITER_CONT; u++, curr_child++, curr_native += type->sizeof_nkey) { - ret_value = (*op)(f, dxpl_id, curr_native, *curr_child, curr_native + type->sizeof_nkey, udata); - if(ret_value < 0) - HERROR(H5E_BTREE, H5E_CANTLIST, "iterator function failed"); - } /* end for */ - - /* Check for continuing iteration */ - if(ret_value == H5_ITER_CONT) { - /* Check for another node */ - if(H5F_addr_defined(next_addr)) { - /* Protect the next node to the right */ - addr = next_addr; - if(NULL == (bt = (H5B_t *)H5AC_protect(f, dxpl_id, H5AC_BT, addr, &cache_udata, H5AC_READ))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, H5_ITER_ERROR, "B-tree node") - - /* Cache information from this node */ - nchildren = bt->nchildren; - next_addr = bt->right; - - /* Copy the native keys & child pointers into local arrays */ - HDmemcpy(native, bt->native, shared->sizeof_keys); - HDmemcpy(child, bt->child, nchildren * sizeof(haddr_t)); - - /* Unprotect node */ - if(H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5AC__NO_FLAGS_SET) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, H5_ITER_ERROR, "unable to release B-tree node") - bt = NULL; - } /* end if */ - else - /* Exit loop */ - break; - } /* end if */ - } /* end while */ - } /* end else */ + /* Iterate over node's children */ + for(u = 0; u < bt->nchildren && ret_value == H5_ITER_CONT; u++) { + if(bt->level > 0) + ret_value = H5B_iterate_helper(f, dxpl_id, type, bt->child[u], op, udata); + else + ret_value = (*op)(f, dxpl_id, H5B_NKEY(bt, shared, u), bt->child[u], H5B_NKEY(bt, shared, u + 1), udata); + if(ret_value < 0) + HERROR(H5E_BTREE, H5E_BADITER, "B-tree iteration failed"); + } /* end for */ done: if(bt && H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5AC__NO_FLAGS_SET) < 0) HDONE_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, H5_ITER_ERROR, "unable to release B-tree node") - if(native) - native = H5FL_BLK_FREE(native_block, native); - if(child) - child = H5FL_SEQ_FREE(haddr_t, child); FUNC_LEAVE_NOAPI(ret_value) } /* end H5B_iterate_helper() */ @@ -1715,7 +1638,7 @@ H5B_delete(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr, void /* Get shared info for B-tree */ if(NULL == (rc_shared = (type->get_shared)(f, udata))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object") + HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object") shared = (H5B_shared_t *)H5UC_GET_OBJ(rc_shared); HDassert(shared); @@ -1724,7 +1647,7 @@ H5B_delete(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr, void cache_udata.type = type; cache_udata.rc_shared = rc_shared; if(NULL == (bt = (H5B_t *)H5AC_protect(f, dxpl_id, H5AC_BT, addr, &cache_udata, H5AC_WRITE))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to load B-tree node") + HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to load B-tree node") /* Iterate over all children in tree, deleting them */ if(bt->level > 0) { @@ -128,11 +128,11 @@ H5FL_DEFINE_STATIC(H5B2_t); H5B2_t * H5B2_create(H5F_t *f, hid_t dxpl_id, const H5B2_create_t *cparam, void *ctx_udata) { - H5B2_t *bt2 = NULL; /* Pointer to the B-tree */ - H5B2_hdr_t *hdr = NULL; /* Pointer to the B-tree header */ + H5B2_t *bt2 = NULL; /* Pointer to the B-tree */ + H5B2_hdr_t *hdr = NULL; /* Pointer to the B-tree header */ H5B2_hdr_cache_ud_t cache_udata; /* User-data for callback */ haddr_t hdr_addr; /* B-tree header address */ - H5B2_t *ret_value; /* Return value */ + H5B2_t *ret_value; /* Return value */ FUNC_ENTER_NOAPI(NULL) @@ -147,7 +147,7 @@ H5B2_create(H5F_t *f, hid_t dxpl_id, const H5B2_create_t *cparam, void *ctx_udat /* Create shared v2 B-tree header */ if(HADDR_UNDEF == (hdr_addr = H5B2_hdr_create(f, dxpl_id, cparam, ctx_udata))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, NULL, "can't create v2 B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, NULL, "can't create v2 B-tree header") /* Create v2 B-tree wrapper */ if(NULL == (bt2 = H5FL_MALLOC(H5B2_t))) @@ -157,7 +157,7 @@ H5B2_create(H5F_t *f, hid_t dxpl_id, const H5B2_create_t *cparam, void *ctx_udat cache_udata.f = f; cache_udata.ctx_udata = ctx_udata; if(NULL == (hdr = (H5B2_hdr_t *)H5AC_protect(f, dxpl_id, H5AC_BT2_HDR, hdr_addr, &cache_udata, H5AC_WRITE))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, NULL, "unable to load B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, NULL, "unable to load B-tree header") /* Point v2 B-tree wrapper at header and bump it's ref count */ bt2->hdr = hdr; @@ -166,7 +166,7 @@ H5B2_create(H5F_t *f, hid_t dxpl_id, const H5B2_create_t *cparam, void *ctx_udat /* Increment # of files using this v2 B-tree header */ if(H5B2_hdr_fuse_incr(bt2->hdr) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTINC, NULL, "can't increment file reference count on shared v2 B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTINC, NULL, "can't increment file reference count on shared v2 B-tree header") /* Set file pointer for this v2 B-tree open context */ bt2->f = f; @@ -299,11 +299,11 @@ H5B2_insert(H5B2_t *bt2, hid_t dxpl_id, void *udata) /* Attempt to insert record into B-tree */ if(hdr->depth > 0) { - if(H5B2_insert_internal(hdr, dxpl_id, hdr->depth, NULL, &hdr->root, udata) < 0) + if(H5B2_insert_internal(hdr, dxpl_id, hdr->depth, NULL, &hdr->root, H5B2_POS_ROOT, udata) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, FAIL, "unable to insert record into B-tree internal node") } /* end if */ else { - if(H5B2_insert_leaf(hdr, dxpl_id, &hdr->root, udata) < 0) + if(H5B2_insert_leaf(hdr, dxpl_id, &hdr->root, H5B2_POS_ROOT, udata) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, FAIL, "unable to insert record into B-tree leaf node") } /* end else */ @@ -420,12 +420,13 @@ htri_t H5B2_find(H5B2_t *bt2, hid_t dxpl_id, void *udata, H5B2_found_t op, void *op_data) { - H5B2_hdr_t *hdr; /* Pointer to the B-tree header */ + H5B2_hdr_t *hdr; /* Pointer to the B-tree header */ H5B2_node_ptr_t curr_node_ptr; /* Node pointer info for current node */ unsigned depth; /* Current depth of the tree */ int cmp; /* Comparison value of records */ unsigned idx; /* Location of record which matches key */ - htri_t ret_value = TRUE; /* Return value */ + H5B2_nodepos_t curr_pos; /* Position of the current node */ + htri_t ret_value = TRUE; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -441,16 +442,39 @@ H5B2_find(H5B2_t *bt2, hid_t dxpl_id, void *udata, H5B2_found_t op, /* Make copy of the root node pointer to start search with */ curr_node_ptr = hdr->root; - /* Current depth of the tree */ - depth = hdr->depth; - /* Check for empty tree */ if(curr_node_ptr.node_nrec == 0) HGOTO_DONE(FALSE) + /* Check record against min & max records in tree, to attempt to quickly + * find candidates or avoid further searching. + */ + if(hdr->min_native_rec != NULL) { + if((cmp = (hdr->cls->compare)(udata, hdr->min_native_rec)) < 0) + HGOTO_DONE(FALSE) /* Less than the least record--not found */ + else if(cmp == 0) { /* Record is found */ + if(op && (op)(hdr->min_native_rec, op_data) < 0) + HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, FAIL, "'found' callback failed for B-tree find operation") + HGOTO_DONE(TRUE) + } /* end if */ + } /* end if */ + if(hdr->max_native_rec != NULL) { + if((cmp = (hdr->cls->compare)(udata, hdr->max_native_rec)) > 0) + HGOTO_DONE(FALSE) /* Greater than the greatest record--not found */ + else if(cmp == 0) { /* Record is found */ + if(op && (op)(hdr->max_native_rec, op_data) < 0) + HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, FAIL, "'found' callback failed for B-tree find operation") + HGOTO_DONE(TRUE) + } /* end if */ + } /* end if */ + + /* Current depth of the tree */ + depth = hdr->depth; + /* Walk down B-tree to find record or leaf node where record is located */ cmp = -1; - while(depth > 0 && cmp != 0) { + curr_pos = H5B2_POS_ROOT; + while(depth > 0) { H5B2_internal_t *internal; /* Pointer to internal node in B-tree */ H5B2_node_ptr_t next_node_ptr; /* Node pointer info for next node */ @@ -467,6 +491,24 @@ H5B2_find(H5B2_t *bt2, hid_t dxpl_id, void *udata, H5B2_found_t op, /* Get node pointer for next node to search */ next_node_ptr=internal->node_ptrs[idx]; + /* Set the position of the next node */ + if(H5B2_POS_MIDDLE != curr_pos) { + if(idx == 0) { + if(H5B2_POS_LEFT == curr_pos || H5B2_POS_ROOT == curr_pos) + curr_pos = H5B2_POS_LEFT; + else + curr_pos = H5B2_POS_MIDDLE; + } /* end if */ + else if(idx == internal->nrec) { + if(H5B2_POS_RIGHT == curr_pos || H5B2_POS_ROOT == curr_pos) + curr_pos = H5B2_POS_RIGHT; + else + curr_pos = H5B2_POS_MIDDLE; + } /* end if */ + else + curr_pos = H5B2_POS_MIDDLE; + } /* end if */ + /* Unlock current node */ if(H5AC_unprotect(hdr->f, dxpl_id, H5AC_BT2_INT, curr_node_ptr.addr, internal, H5AC__NO_FLAGS_SET) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, FAIL, "unable to release B-tree node") @@ -523,6 +565,27 @@ H5B2_find(H5B2_t *bt2, hid_t dxpl_id, void *udata, H5B2_found_t op, HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, FAIL, "'found' callback failed for B-tree find operation") } /* end if */ + + /* Check for record being the min or max for the tree */ + /* (Don't use 'else' for the idx check, to allow for root leaf node) */ + if(H5B2_POS_MIDDLE != curr_pos) { + if(idx == 0) { + if(H5B2_POS_LEFT == curr_pos || H5B2_POS_ROOT == curr_pos) { + if(hdr->min_native_rec == NULL) + if(NULL == (hdr->min_native_rec = (uint8_t *)HDmalloc(hdr->cls->nrec_size))) + HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree min record info") + HDmemcpy(hdr->min_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size); + } /* end if */ + } /* end if */ + if(idx == (unsigned)(leaf->nrec - 1)) { + if(H5B2_POS_RIGHT == curr_pos || H5B2_POS_ROOT == curr_pos) { + if(hdr->max_native_rec == NULL) + if(NULL == (hdr->max_native_rec = (uint8_t *)HDmalloc(hdr->cls->nrec_size))) + HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree max record info") + HDmemcpy(hdr->max_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size); + } /* end if */ + } /* end if */ + } /* end if */ } /* end else */ /* Unlock current node */ @@ -577,9 +640,6 @@ H5B2_index(H5B2_t *bt2, hid_t dxpl_id, H5_iter_order_t order, hsize_t idx, /* Make copy of the root node pointer to start search with */ curr_node_ptr = hdr->root; - /* Current depth of the tree */ - depth = hdr->depth; - /* Check for empty tree */ if(curr_node_ptr.node_nrec == 0) HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, FAIL, "B-tree has no records") @@ -588,6 +648,9 @@ H5B2_index(H5B2_t *bt2, hid_t dxpl_id, H5_iter_order_t order, hsize_t idx, if(idx >= curr_node_ptr.all_nrec) HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, FAIL, "B-tree doesn't have that many records") + /* Current depth of the tree */ + depth = hdr->depth; + /* Check for reverse indexing and map requested index to appropriate forward index */ if(order == H5_ITER_DEC) idx = curr_node_ptr.all_nrec - (idx + 1); @@ -736,7 +799,7 @@ H5B2_remove(H5B2_t *bt2, hid_t dxpl_id, void *udata, H5B2_remove_t op, hbool_t depth_decreased = FALSE; /* Flag to indicate whether the depth of the B-tree decreased */ if(H5B2_remove_internal(hdr, dxpl_id, &depth_decreased, NULL, hdr->depth, - &(hdr->cache_info), NULL, &hdr->root, udata, op, op_data) < 0) + &(hdr->cache_info), NULL, H5B2_POS_ROOT, &hdr->root, udata, op, op_data) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTDELETE, FAIL, "unable to remove record from B-tree internal node") /* Check for decreasing the depth of the B-tree */ @@ -754,7 +817,7 @@ H5B2_remove(H5B2_t *bt2, hid_t dxpl_id, void *udata, H5B2_remove_t op, } /* end for */ } /* end if */ else { - if(H5B2_remove_leaf(hdr, dxpl_id, &hdr->root, udata, op, op_data) < 0) + if(H5B2_remove_leaf(hdr, dxpl_id, &hdr->root, H5B2_POS_ROOT, udata, op, op_data) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTDELETE, FAIL, "unable to remove record from B-tree leaf node") } /* end else */ @@ -818,7 +881,7 @@ H5B2_remove_by_idx(H5B2_t *bt2, hid_t dxpl_id, H5_iter_order_t order, hbool_t depth_decreased = FALSE; /* Flag to indicate whether the depth of the B-tree decreased */ if(H5B2_remove_internal_by_idx(hdr, dxpl_id, &depth_decreased, NULL, hdr->depth, - &(hdr->cache_info), NULL, &hdr->root, idx, op, op_data) < 0) + &(hdr->cache_info), NULL, &hdr->root, H5B2_POS_ROOT, idx, op, op_data) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTDELETE, FAIL, "unable to remove record from B-tree internal node") /* Check for decreasing the depth of the B-tree */ @@ -836,7 +899,7 @@ H5B2_remove_by_idx(H5B2_t *bt2, hid_t dxpl_id, H5_iter_order_t order, } /* end for */ } /* end if */ else { - if(H5B2_remove_leaf_by_idx(hdr, dxpl_id, &hdr->root, (unsigned)idx, op, op_data) < 0) + if(H5B2_remove_leaf_by_idx(hdr, dxpl_id, &hdr->root, H5B2_POS_ROOT, (unsigned)idx, op, op_data) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTDELETE, FAIL, "unable to remove record from B-tree leaf node") } /* end else */ @@ -970,6 +1033,7 @@ H5B2_modify(H5B2_t *bt2, hid_t dxpl_id, void *udata, H5B2_modify_t op, { H5B2_hdr_t *hdr; /* Pointer to the B-tree header */ H5B2_node_ptr_t curr_node_ptr; /* Node pointer info for current node */ + H5B2_nodepos_t curr_pos; /* Position of current node */ unsigned depth; /* Current depth of the tree */ int cmp; /* Comparison value of records */ unsigned idx; /* Location of record which matches key */ @@ -990,16 +1054,17 @@ H5B2_modify(H5B2_t *bt2, hid_t dxpl_id, void *udata, H5B2_modify_t op, /* Make copy of the root node pointer to start search with */ curr_node_ptr = hdr->root; - /* Current depth of the tree */ - depth = hdr->depth; - /* Check for empty tree */ if(0 == curr_node_ptr.node_nrec) HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, FAIL, "B-tree has no records") + /* Current depth of the tree */ + depth = hdr->depth; + /* Walk down B-tree to find record or leaf node where record is located */ cmp = -1; - while(depth > 0 && cmp != 0) { + curr_pos = H5B2_POS_ROOT; + while(depth > 0) { unsigned internal_flags = H5AC__NO_FLAGS_SET; H5B2_internal_t *internal; /* Pointer to internal node in B-tree */ H5B2_node_ptr_t next_node_ptr; /* Node pointer info for next node */ @@ -1017,6 +1082,24 @@ H5B2_modify(H5B2_t *bt2, hid_t dxpl_id, void *udata, H5B2_modify_t op, /* Get node pointer for next node to search */ next_node_ptr = internal->node_ptrs[idx]; + /* Set the position of the next node */ + if(H5B2_POS_MIDDLE != curr_pos) { + if(idx == 0) { + if(H5B2_POS_LEFT == curr_pos || H5B2_POS_ROOT == curr_pos) + curr_pos = H5B2_POS_LEFT; + else + curr_pos = H5B2_POS_MIDDLE; + } /* end if */ + else if(idx == internal->nrec) { + if(H5B2_POS_RIGHT == curr_pos || H5B2_POS_ROOT == curr_pos) + curr_pos = H5B2_POS_RIGHT; + else + curr_pos = H5B2_POS_MIDDLE; + } /* end if */ + else + curr_pos = H5B2_POS_MIDDLE; + } /* end if */ + /* Unlock current node */ if(H5AC_unprotect(hdr->f, dxpl_id, H5AC_BT2_INT, curr_node_ptr.addr, internal, H5AC__NO_FLAGS_SET) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, FAIL, "unable to release B-tree node") @@ -1092,6 +1175,27 @@ H5B2_modify(H5B2_t *bt2, hid_t dxpl_id, void *udata, H5B2_modify_t op, HGOTO_ERROR(H5E_BTREE, H5E_CANTMODIFY, FAIL, "'modify' callback failed for B-tree find operation") } /* end if */ + + /* Check for modified record being the min or max for the tree */ + /* (Don't use 'else' for the idx check, to allow for root leaf node) */ + if(H5B2_POS_MIDDLE != curr_pos) { + if(idx == 0) { + if(H5B2_POS_LEFT == curr_pos || H5B2_POS_ROOT == curr_pos) { + if(hdr->min_native_rec == NULL) + if(NULL == (hdr->min_native_rec = (uint8_t *)HDmalloc(hdr->cls->nrec_size))) + HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree min record info") + HDmemcpy(hdr->min_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size); + } /* end if */ + } /* end if */ + if(idx == (unsigned)(leaf->nrec - 1)) { + if(H5B2_POS_RIGHT == curr_pos || H5B2_POS_ROOT == curr_pos) { + if(hdr->max_native_rec == NULL) + if(NULL == (hdr->max_native_rec = (uint8_t *)HDmalloc(hdr->cls->nrec_size))) + HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree max record info") + HDmemcpy(hdr->max_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size); + } /* end if */ + } /* end if */ + } /* end if */ } /* end else */ /* Mark the node as dirty if it changed */ diff --git a/src/H5B2cache.c b/src/H5B2cache.c index 1554501..1e2a6a3 100644 --- a/src/H5B2cache.c +++ b/src/H5B2cache.c @@ -15,11 +15,11 @@ /*------------------------------------------------------------------------- * - * Created: H5B2cache.c - * Jan 31 2005 - * Quincey Koziol <koziol@ncsa.uiuc.edu> + * Created: H5B2cache.c + * Jan 31 2005 + * Quincey Koziol <koziol@hdfgroup.org> * - * Purpose: Implement v2 B-tree metadata cache methods. + * Purpose: Implement v2 B-tree metadata cache methods. * *------------------------------------------------------------------------- */ @@ -174,7 +174,7 @@ H5B2__cache_hdr_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_udata) /* Allocate new B-tree header and reset cache info */ if(NULL == (hdr = H5B2_hdr_alloc(udata->f))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, NULL, "allocation failed for B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, NULL, "allocation failed for B-tree header") /* Wrap the local buffer for serialized header info */ if(NULL == (wb = H5WB_wrap(hdr_buf, sizeof(hdr_buf)))) @@ -186,7 +186,7 @@ H5B2__cache_hdr_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_udata) /* Read header from disk */ if(H5F_block_read(f, H5FD_MEM_BTREE, addr, hdr->hdr_size, dxpl_id, buf) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_READERROR, NULL, "can't read B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_READERROR, NULL, "can't read B-tree header") /* Get temporary pointer to serialized header */ p = buf; @@ -203,7 +203,7 @@ H5B2__cache_hdr_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_udata) /* B-tree class */ id = (H5B2_subid_t)*p++; if(id >= H5B2_NUM_BTREE_ID) - HGOTO_ERROR(H5E_BTREE, H5E_BADTYPE, NULL, "incorrect B-tree type") + HGOTO_ERROR(H5E_BTREE, H5E_BADTYPE, NULL, "incorrect B-tree type") /* Node size (in bytes) */ UINT32DECODE(p, cparam.node_size); @@ -234,12 +234,12 @@ H5B2__cache_hdr_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_udata) /* Verify checksum */ if(stored_chksum != computed_chksum) - HGOTO_ERROR(H5E_BTREE, H5E_BADVALUE, NULL, "incorrect metadata checksum for v2 B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_BADVALUE, NULL, "incorrect metadata checksum for v2 B-tree header") /* Initialize B-tree header info */ cparam.cls = H5B2_client_class_g[id]; if(H5B2_hdr_init(hdr, &cparam, udata->ctx_udata, depth) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, NULL, "can't initialize B-tree header info") + HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, NULL, "can't initialize B-tree header info") /* Set the B-tree header's address */ hdr->addr = addr; @@ -342,17 +342,17 @@ H5B2__cache_hdr_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, /* Metadata checksum */ UINT32ENCODE(p, metadata_chksum); - /* Write the B-tree header. */ + /* Write the B-tree header. */ HDassert((size_t)(p - buf) == hdr->hdr_size); - if(H5F_block_write(f, H5FD_MEM_BTREE, addr, hdr->hdr_size, dxpl_id, buf) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTFLUSH, FAIL, "unable to save B-tree header to disk") + if(H5F_block_write(f, H5FD_MEM_BTREE, addr, hdr->hdr_size, dxpl_id, buf) < 0) + HGOTO_ERROR(H5E_BTREE, H5E_CANTFLUSH, FAIL, "unable to save B-tree header to disk") - hdr->cache_info.is_dirty = FALSE; + hdr->cache_info.is_dirty = FALSE; } /* end if */ if(destroy) if(H5B2__cache_hdr_dest(f, hdr) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTFREE, FAIL, "unable to destroy B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTFREE, FAIL, "unable to destroy B-tree header") done: /* Release resources */ @@ -445,17 +445,17 @@ done: /*------------------------------------------------------------------------- - * Function: H5B2__cache_hdr_size + * Function: H5B2__cache_hdr_size * - * Purpose: Compute the size in bytes of a B-tree header - * on disk, and return it in *size_ptr. On failure, - * the value of *size_ptr is undefined. + * Purpose: Compute the size in bytes of a B-tree header + * on disk, and return it in *size_ptr. On failure, + * the value of *size_ptr is undefined. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED (Can't fail) * - * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu - * Feb 1 2005 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Feb 1 2005 * *------------------------------------------------------------------------- */ @@ -466,6 +466,7 @@ H5B2__cache_hdr_size(const H5F_t UNUSED *f, const H5B2_hdr_t *hdr, size_t *size_ /* check arguments */ HDassert(f); + HDassert(hdr); HDassert(size_ptr); /* Set size value */ @@ -519,14 +520,14 @@ H5B2__cache_internal_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_udata) /* Increment ref. count on B-tree header */ if(H5B2_hdr_incr(udata->hdr) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTINC, NULL, "can't increment ref. count on B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTINC, NULL, "can't increment ref. count on B-tree header") /* Share B-tree information */ internal->hdr = udata->hdr; /* Read header from disk */ if(H5F_block_read(f, H5FD_MEM_BTREE, addr, udata->hdr->node_size, dxpl_id, udata->hdr->page) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_READERROR, NULL, "can't read B-tree internal node") + HGOTO_ERROR(H5E_BTREE, H5E_READERROR, NULL, "can't read B-tree internal node") p = udata->hdr->page; @@ -541,7 +542,7 @@ H5B2__cache_internal_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_udata) /* B-tree type */ if(*p++ != (uint8_t)udata->hdr->cls->id) - HGOTO_ERROR(H5E_BTREE, H5E_BADTYPE, NULL, "incorrect B-tree type") + HGOTO_ERROR(H5E_BTREE, H5E_BADTYPE, NULL, "incorrect B-tree type") /* Allocate space for the native keys in memory */ if(NULL == (internal->int_native = (uint8_t *)H5FL_FAC_MALLOC(udata->hdr->node_info[udata->depth].nat_rec_fac))) @@ -593,7 +594,7 @@ H5B2__cache_internal_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *_udata) /* Verify checksum */ if(stored_chksum != computed_chksum) - HGOTO_ERROR(H5E_BTREE, H5E_BADVALUE, NULL, "incorrect metadata checksum for v2 internal node") + HGOTO_ERROR(H5E_BTREE, H5E_BADVALUE, NULL, "incorrect metadata checksum for v2 internal node") /* Set return value */ ret_value = internal; @@ -853,7 +854,7 @@ H5B2__cache_leaf_load(H5F_t UNUSED *f, hid_t dxpl_id, haddr_t addr, void *_udata /* Allocate new leaf node and reset cache info */ if(NULL == (leaf = H5FL_MALLOC(H5B2_leaf_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") HDmemset(&leaf->cache_info, 0, sizeof(H5AC_info_t)); /* Set the B-tree header's file context for this operation */ @@ -861,33 +862,33 @@ H5B2__cache_leaf_load(H5F_t UNUSED *f, hid_t dxpl_id, haddr_t addr, void *_udata /* Increment ref. count on B-tree header */ if(H5B2_hdr_incr(udata->hdr) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTINC, NULL, "can't increment ref. count on B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTINC, NULL, "can't increment ref. count on B-tree header") /* Share B-tree header information */ leaf->hdr = udata->hdr; /* Read header from disk */ if(H5F_block_read(udata->f, H5FD_MEM_BTREE, addr, udata->hdr->node_size, dxpl_id, udata->hdr->page) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_READERROR, NULL, "can't read B-tree leaf node") + HGOTO_ERROR(H5E_BTREE, H5E_READERROR, NULL, "can't read B-tree leaf node") p = udata->hdr->page; /* Magic number */ if(HDmemcmp(p, H5B2_LEAF_MAGIC, (size_t)H5_SIZEOF_MAGIC)) - HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, NULL, "wrong B-tree leaf node signature") + HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, NULL, "wrong B-tree leaf node signature") p += H5_SIZEOF_MAGIC; /* Version */ if(*p++ != H5B2_LEAF_VERSION) - HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, NULL, "wrong B-tree leaf node version") + HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, NULL, "wrong B-tree leaf node version") /* B-tree type */ if(*p++ != (uint8_t)udata->hdr->cls->id) - HGOTO_ERROR(H5E_BTREE, H5E_BADTYPE, NULL, "incorrect B-tree type") + HGOTO_ERROR(H5E_BTREE, H5E_BADTYPE, NULL, "incorrect B-tree type") /* Allocate space for the native keys in memory */ if(NULL == (leaf->leaf_native = (uint8_t *)H5FL_FAC_MALLOC(udata->hdr->node_info[0].nat_rec_fac))) - HGOTO_ERROR(H5E_BTREE, H5E_NOSPACE, NULL, "memory allocation failed for B-tree leaf native keys") + HGOTO_ERROR(H5E_BTREE, H5E_NOSPACE, NULL, "memory allocation failed for B-tree leaf native keys") /* Set the number of records in the leaf */ leaf->nrec = udata->nrec; diff --git a/src/H5B2hdr.c b/src/H5B2hdr.c index 443a2e5..452a35d 100644 --- a/src/H5B2hdr.c +++ b/src/H5B2hdr.c @@ -166,7 +166,7 @@ HDmemset(hdr->page, 0, hdr->node_size); hdr->node_info[0].cum_max_nrec = hdr->node_info[0].max_nrec; hdr->node_info[0].cum_max_nrec_size = 0; if(NULL == (hdr->node_info[0].nat_rec_fac = H5FL_fac_init(hdr->cls->nrec_size * hdr->node_info[0].max_nrec))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, FAIL, "can't create node native key block factory") + HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, FAIL, "can't create node native key block factory") hdr->node_info[0].node_ptr_fac = NULL; /* Allocate array of pointers to internal node native keys */ @@ -250,7 +250,7 @@ H5B2_hdr_alloc(H5F_t *f) /* Allocate space for the shared information */ if(NULL == (hdr = H5FL_CALLOC(H5B2_hdr_t))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, NULL, "memory allocation failed for B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, NULL, "memory allocation failed for B-tree header") /* Assign non-zero information */ hdr->f = f; @@ -298,19 +298,19 @@ H5B2_hdr_create(H5F_t *f, hid_t dxpl_id, const H5B2_create_t *cparam, /* Allocate v2 B-tree header */ if(NULL == (hdr = H5B2_hdr_alloc(f))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, HADDR_UNDEF, "allocation failed for B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, HADDR_UNDEF, "allocation failed for B-tree header") /* Initialize shared B-tree info */ if(H5B2_hdr_init(hdr, cparam, ctx_udata, (uint16_t)0) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, HADDR_UNDEF, "can't create shared B-tree info") + HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, HADDR_UNDEF, "can't create shared B-tree info") /* Allocate space for the header on disk */ if(HADDR_UNDEF == (hdr->addr = H5MF_alloc(f, H5FD_MEM_BTREE, dxpl_id, (hsize_t)hdr->hdr_size))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, HADDR_UNDEF, "file allocation failed for B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, HADDR_UNDEF, "file allocation failed for B-tree header") /* Cache the new B-tree node */ if(H5AC_insert_entry(f, dxpl_id, H5AC_BT2_HDR, hdr->addr, hdr, H5AC__NO_FLAGS_SET) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, HADDR_UNDEF, "can't add B-tree header to cache") + HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, HADDR_UNDEF, "can't add B-tree header to cache") /* Set address of v2 B-tree header to return */ ret_value = hdr->addr; @@ -398,15 +398,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5B2_hdr_fuse_incr + * Function: H5B2_hdr_fuse_incr * - * Purpose: Increment file reference count on shared v2 B-tree header + * Purpose: Increment file reference count on shared v2 B-tree header * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED (Can't fail) * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Oct 27 2009 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Oct 27 2009 * *------------------------------------------------------------------------- */ @@ -426,15 +426,15 @@ H5B2_hdr_fuse_incr(H5B2_hdr_t *hdr) /*------------------------------------------------------------------------- - * Function: H5B2_hdr_fuse_decr + * Function: H5B2_hdr_fuse_decr * - * Purpose: Decrement file reference count on shared v2 B-tree header + * Purpose: Decrement file reference count on shared v2 B-tree header * - * Return: Non-negative on success/Negative on failure + * Return: The file's reference count after the decrement. (Can't fail) * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Oct 27 2009 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Oct 27 2009 * *------------------------------------------------------------------------- */ @@ -542,6 +542,16 @@ H5B2_hdr_free(H5B2_hdr_t *hdr) hdr->node_info = H5FL_SEQ_FREE(H5B2_node_info_t, hdr->node_info); } /* end if */ + /* Release the min & max record info, if set */ + if(hdr->min_native_rec) { + HDfree(hdr->min_native_rec); + hdr->min_native_rec = NULL; + } /* end if */ + if(hdr->max_native_rec) { + HDfree(hdr->max_native_rec); + hdr->max_native_rec = NULL; + } /* end if */ + /* Free B-tree header info */ hdr = H5FL_FREE(H5B2_hdr_t, hdr); diff --git a/src/H5B2int.c b/src/H5B2int.c index 630ff98..ef83e93 100644 --- a/src/H5B2int.c +++ b/src/H5B2int.c @@ -172,9 +172,9 @@ H5B2_locate_record(const H5B2_class_t *type, unsigned nrec, size_t *rec_off, *------------------------------------------------------------------------- */ static herr_t -H5B2_split1(H5B2_hdr_t *hdr, hid_t dxpl_id, unsigned depth, H5B2_node_ptr_t *curr_node_ptr, - unsigned *parent_cache_info_flags_ptr, H5B2_internal_t *internal, - unsigned *internal_flags_ptr, unsigned idx) +H5B2_split1(H5B2_hdr_t *hdr, hid_t dxpl_id, unsigned depth, + H5B2_node_ptr_t *curr_node_ptr, unsigned *parent_cache_info_flags_ptr, + H5B2_internal_t *internal, unsigned *internal_flags_ptr, unsigned idx) { const H5AC_class_t *child_class; /* Pointer to child node's class info */ haddr_t left_addr, right_addr; /* Addresses of left & right child nodes */ @@ -214,7 +214,7 @@ H5B2_split1(H5B2_hdr_t *hdr, hid_t dxpl_id, unsigned depth, H5B2_node_ptr_t *cur left_addr = internal->node_ptrs[idx].addr; right_addr = internal->node_ptrs[idx + 1].addr; - /* Protect both leafs */ + /* Protect both leaves */ if(NULL == (left_int = H5B2_protect_internal(hdr, dxpl_id, left_addr, internal->node_ptrs[idx].node_nrec, (depth - 1), H5AC_WRITE))) HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to protect B-tree internal node") if(NULL == (right_int = H5B2_protect_internal(hdr, dxpl_id, right_addr, internal->node_ptrs[idx + 1].node_nrec, (depth - 1), H5AC_WRITE))) @@ -243,7 +243,7 @@ H5B2_split1(H5B2_hdr_t *hdr, hid_t dxpl_id, unsigned depth, H5B2_node_ptr_t *cur left_addr = internal->node_ptrs[idx].addr; right_addr = internal->node_ptrs[idx + 1].addr; - /* Protect both leafs */ + /* Protect both leaves */ if(NULL == (left_leaf = H5B2_protect_leaf(hdr, dxpl_id, left_addr, internal->node_ptrs[idx].node_nrec, H5AC_WRITE))) HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to protect B-tree leaf node") if(NULL == (right_leaf = H5B2_protect_leaf(hdr, dxpl_id, right_addr, internal->node_ptrs[idx + 1].node_nrec, H5AC_WRITE))) @@ -341,7 +341,7 @@ done: HDONE_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, FAIL, "unable to release B-tree leaf node") FUNC_LEAVE_NOAPI(ret_value) -} /* end H5B2_split1 */ +} /* end H5B2_split1() */ /*------------------------------------------------------------------------- @@ -646,7 +646,7 @@ done: HDONE_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, FAIL, "unable to release B-tree child node") FUNC_LEAVE_NOAPI(ret_value) -} /* end H5B2_redistribute2 */ +} /* end H5B2_redistribute2() */ /*------------------------------------------------------------------------- @@ -1033,7 +1033,7 @@ done: HDONE_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, FAIL, "unable to release B-tree child node") FUNC_LEAVE_NOAPI(ret_value) -} /* end H5B2_redistribute3 */ +} /* end H5B2_redistribute3() */ /*------------------------------------------------------------------------- @@ -1505,7 +1505,7 @@ done: HDONE_ERROR(H5E_BTREE, H5E_CANTUNPROTECT, FAIL, "unable to release B-tree child node") FUNC_LEAVE_NOAPI(ret_value) -} /* end H5B2_swap_leaf */ +} /* end H5B2_swap_leaf() */ /*------------------------------------------------------------------------- @@ -1523,7 +1523,7 @@ done: */ herr_t H5B2_insert_leaf(H5B2_hdr_t *hdr, hid_t dxpl_id, H5B2_node_ptr_t *curr_node_ptr, - void *udata) + H5B2_nodepos_t curr_pos, void *udata) { H5B2_leaf_t *leaf; /* Pointer to leaf node */ int cmp; /* Comparison value of records */ @@ -1574,6 +1574,27 @@ H5B2_insert_leaf(H5B2_hdr_t *hdr, hid_t dxpl_id, H5B2_node_ptr_t *curr_node_ptr, /* Update record count for current node */ leaf->nrec++; + /* Check for new record being the min or max for the tree */ + /* (Don't use 'else' for the idx check, to allow for root leaf node) */ + if(H5B2_POS_MIDDLE != curr_pos) { + if(idx == 0) { + if(H5B2_POS_LEFT == curr_pos || H5B2_POS_ROOT == curr_pos) { + if(hdr->min_native_rec == NULL) + if(NULL == (hdr->min_native_rec = (uint8_t *)HDmalloc(hdr->cls->nrec_size))) + HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree min record info") + HDmemcpy(hdr->min_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size); + } /* end if */ + } /* end if */ + if(idx == (unsigned)(leaf->nrec - 1)) { + if(H5B2_POS_RIGHT == curr_pos || H5B2_POS_ROOT == curr_pos) { + if(hdr->max_native_rec == NULL) + if(NULL == (hdr->max_native_rec = (uint8_t *)HDmalloc(hdr->cls->nrec_size))) + HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for v2 B-tree max record info") + HDmemcpy(hdr->max_native_rec, H5B2_LEAF_NREC(leaf, hdr, idx), hdr->cls->nrec_size); + } /* end if */ + } /* end if */ + } /* end if */ + done: /* Release the B-tree leaf node (marked as dirty) */ if(leaf && H5AC_unprotect(hdr->f, dxpl_id, H5AC_BT2_LEAF, curr_node_ptr->addr, leaf, H5AC__DIRTIED_FLAG) < 0) @@ -1599,11 +1620,12 @@ done: herr_t H5B2_insert_internal(H5B2_hdr_t *hdr, hid_t dxpl_id, unsigned depth, unsigned *parent_cache_info_flags_ptr, H5B2_node_ptr_t *curr_node_ptr, - void *udata) + H5B2_nodepos_t curr_pos, void *udata) { - H5B2_internal_t *internal; /* Pointer to internal node */ + H5B2_internal_t *internal = NULL; /* Pointer to internal node */ unsigned internal_flags = H5AC__NO_FLAGS_SET; unsigned idx; /* Location of record which matches key */ + H5B2_nodepos_t next_pos = H5B2_POS_MIDDLE; /* Position of node */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT @@ -1618,7 +1640,7 @@ H5B2_insert_internal(H5B2_hdr_t *hdr, hid_t dxpl_id, unsigned depth, if(NULL == (internal = H5B2_protect_internal(hdr, dxpl_id, curr_node_ptr->addr, curr_node_ptr->node_nrec, depth, H5AC_WRITE))) HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to protect B-tree internal node") -/* Split or redistribute child node pointers, if necessary */ + /* Split or redistribute child node pointers, if necessary */ { int cmp; /* Comparison value of records */ unsigned retries; /* Number of times to attempt redistribution */ @@ -1691,13 +1713,25 @@ H5B2_insert_internal(H5B2_hdr_t *hdr, hid_t dxpl_id, unsigned depth, } /* end while */ } /* end block */ + /* Check if this node is left/right-most */ + if(H5B2_POS_MIDDLE != curr_pos) { + if(idx == 0) { + if(H5B2_POS_LEFT == curr_pos || H5B2_POS_ROOT == curr_pos) + next_pos = H5B2_POS_LEFT; + } /* end if */ + else if(idx == internal->nrec) { + if(H5B2_POS_RIGHT == curr_pos || H5B2_POS_ROOT == curr_pos) + next_pos = H5B2_POS_RIGHT; + } /* end else */ + } /* end if */ + /* Attempt to insert node */ if(depth > 1) { - if(H5B2_insert_internal(hdr, dxpl_id, (depth - 1), &internal_flags, &internal->node_ptrs[idx], udata) < 0) + if(H5B2_insert_internal(hdr, dxpl_id, (depth - 1), &internal_flags, &internal->node_ptrs[idx], next_pos, udata) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, FAIL, "unable to insert record into B-tree internal node") } /* end if */ else { - if(H5B2_insert_leaf(hdr, dxpl_id, &internal->node_ptrs[idx], udata) < 0) + if(H5B2_insert_leaf(hdr, dxpl_id, &internal->node_ptrs[idx], next_pos, udata) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, FAIL, "unable to insert record into B-tree leaf node") } /* end else */ @@ -2074,7 +2108,7 @@ done: */ herr_t H5B2_remove_leaf(H5B2_hdr_t *hdr, hid_t dxpl_id, H5B2_node_ptr_t *curr_node_ptr, - void *udata, H5B2_remove_t op, void *op_data) + H5B2_nodepos_t curr_pos, void *udata, H5B2_remove_t op, void *op_data) { H5B2_leaf_t *leaf; /* Pointer to leaf node */ haddr_t leaf_addr = HADDR_UNDEF; /* Leaf address on disk */ @@ -2102,6 +2136,27 @@ H5B2_remove_leaf(H5B2_hdr_t *hdr, hid_t dxpl_id, H5B2_node_ptr_t *curr_node_ptr, if(H5B2_locate_record(hdr->cls, leaf->nrec, hdr->nat_off, leaf->leaf_native, udata, &idx) != 0) HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, FAIL, "record is not in B-tree") + /* Check for invalidating the min/max record for the tree */ + if(H5B2_POS_MIDDLE != curr_pos) { + /* (Don't use 'else' for the idx check, to allow for root leaf node) */ + if(idx == 0) { + if(H5B2_POS_LEFT == curr_pos || H5B2_POS_ROOT == curr_pos) { + if(hdr->min_native_rec) { + HDfree(hdr->min_native_rec); + hdr->min_native_rec = NULL; + } /* end if */ + } /* end if */ + } /* end if */ + if(idx == (unsigned)(leaf->nrec - 1)) { + if(H5B2_POS_RIGHT == curr_pos || H5B2_POS_ROOT == curr_pos) { + if(hdr->max_native_rec) { + HDfree(hdr->max_native_rec); + hdr->max_native_rec = NULL; + } /* end if */ + } /* end if */ + } /* end if */ + } /* end if */ + /* Make 'remove' callback if there is one */ if(op) if((op)(H5B2_LEAF_NREC(leaf, hdr, idx), op_data) < 0) @@ -2154,13 +2209,14 @@ done: herr_t H5B2_remove_internal(H5B2_hdr_t *hdr, hid_t dxpl_id, hbool_t *depth_decreased, void *swap_loc, unsigned depth, H5AC_info_t *parent_cache_info, - unsigned *parent_cache_info_flags_ptr, H5B2_node_ptr_t *curr_node_ptr, - void *udata, H5B2_remove_t op, void *op_data) + unsigned *parent_cache_info_flags_ptr, H5B2_nodepos_t curr_pos, + H5B2_node_ptr_t *curr_node_ptr, void *udata, H5B2_remove_t op, void *op_data) { H5AC_info_t *new_cache_info; /* Pointer to new cache info */ unsigned *new_cache_info_flags_ptr = NULL; H5B2_node_ptr_t *new_node_ptr; /* Pointer to new node pointer */ H5B2_internal_t *internal; /* Pointer to internal node */ + H5B2_nodepos_t next_pos = H5B2_POS_MIDDLE; /* Position of next node */ unsigned internal_flags = H5AC__NO_FLAGS_SET; haddr_t internal_addr; /* Address of internal node */ size_t merge_nrec; /* Number of records to merge node at */ @@ -2211,6 +2267,9 @@ H5B2_remove_internal(H5B2_hdr_t *hdr, hid_t dxpl_id, hbool_t *depth_decreased, /* Set flag to indicate root was collapsed */ collapsed_root = TRUE; + + /* Indicate position of next node */ + next_pos = H5B2_POS_ROOT; } /* end if */ /* Merge or redistribute child node pointers, if necessary */ else { @@ -2306,16 +2365,28 @@ H5B2_remove_internal(H5B2_hdr_t *hdr, hid_t dxpl_id, hbool_t *depth_decreased, new_cache_info_flags_ptr = &internal_flags; new_cache_info = &internal->cache_info; new_node_ptr = &internal->node_ptrs[idx]; + + /* Indicate position of next node */ + if(H5B2_POS_MIDDLE != curr_pos) { + if(idx == 0) { + if(H5B2_POS_LEFT == curr_pos || H5B2_POS_ROOT == curr_pos) + next_pos = H5B2_POS_LEFT; + } /* end if */ + else if(idx == internal->nrec) { + if(H5B2_POS_RIGHT == curr_pos || H5B2_POS_ROOT == curr_pos) + next_pos = H5B2_POS_RIGHT; + } /* end if */ + } /* end if */ } /* end else */ /* Attempt to remove record from child node */ if(depth > 1) { if(H5B2_remove_internal(hdr, dxpl_id, depth_decreased, swap_loc, depth - 1, - new_cache_info, new_cache_info_flags_ptr, new_node_ptr, udata, op, op_data) < 0) + new_cache_info, new_cache_info_flags_ptr, next_pos, new_node_ptr, udata, op, op_data) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTDELETE, FAIL, "unable to remove record from B-tree internal node") } /* end if */ else { - if(H5B2_remove_leaf(hdr, dxpl_id, new_node_ptr, udata, op, op_data) < 0) + if(H5B2_remove_leaf(hdr, dxpl_id, new_node_ptr, next_pos, udata, op, op_data) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTDELETE, FAIL, "unable to remove record from B-tree leaf node") } /* end else */ @@ -2355,8 +2426,8 @@ done: */ herr_t H5B2_remove_leaf_by_idx(H5B2_hdr_t *hdr, hid_t dxpl_id, - H5B2_node_ptr_t *curr_node_ptr, unsigned idx, H5B2_remove_t op, - void *op_data) + H5B2_node_ptr_t *curr_node_ptr, H5B2_nodepos_t curr_pos, + unsigned idx, H5B2_remove_t op, void *op_data) { H5B2_leaf_t *leaf; /* Pointer to leaf node */ haddr_t leaf_addr = HADDR_UNDEF; /* Leaf address on disk */ @@ -2380,6 +2451,27 @@ H5B2_remove_leaf_by_idx(H5B2_hdr_t *hdr, hid_t dxpl_id, HDassert(leaf->nrec == curr_node_ptr->node_nrec); HDassert(idx < leaf->nrec); + /* Check for invalidating the min/max record for the tree */ + if(H5B2_POS_MIDDLE != curr_pos) { + /* (Don't use 'else' for the idx check, to allow for root leaf node) */ + if(idx == 0) { + if(H5B2_POS_LEFT == curr_pos || H5B2_POS_ROOT == curr_pos) { + if(hdr->min_native_rec) { + HDfree(hdr->min_native_rec); + hdr->min_native_rec = NULL; + } /* end if */ + } /* end if */ + } /* end if */ + if(idx == (unsigned)(leaf->nrec - 1)) { + if(H5B2_POS_RIGHT == curr_pos || H5B2_POS_ROOT == curr_pos) { + if(hdr->max_native_rec) { + HDfree(hdr->max_native_rec); + hdr->max_native_rec = NULL; + } /* end if */ + } /* end if */ + } /* end if */ + } /* end if */ + /* Make 'remove' callback if there is one */ if(op) if((op)(H5B2_LEAF_NREC(leaf, hdr, idx), op_data) < 0) @@ -2434,13 +2526,14 @@ herr_t H5B2_remove_internal_by_idx(H5B2_hdr_t *hdr, hid_t dxpl_id, hbool_t *depth_decreased, void *swap_loc, unsigned depth, H5AC_info_t *parent_cache_info, unsigned *parent_cache_info_flags_ptr, - H5B2_node_ptr_t *curr_node_ptr, hsize_t n, H5B2_remove_t op, - void *op_data) + H5B2_node_ptr_t *curr_node_ptr, H5B2_nodepos_t curr_pos, hsize_t n, + H5B2_remove_t op, void *op_data) { H5AC_info_t *new_cache_info; /* Pointer to new cache info */ unsigned *new_cache_info_flags_ptr = NULL; H5B2_node_ptr_t *new_node_ptr; /* Pointer to new node pointer */ H5B2_internal_t *internal; /* Pointer to internal node */ + H5B2_nodepos_t next_pos = H5B2_POS_MIDDLE; /* Position of next node */ unsigned internal_flags = H5AC__NO_FLAGS_SET; haddr_t internal_addr; /* Address of internal node */ size_t merge_nrec; /* Number of records to merge node at */ @@ -2494,6 +2587,9 @@ H5B2_remove_internal_by_idx(H5B2_hdr_t *hdr, hid_t dxpl_id, /* Set flag to indicate root was collapsed */ collapsed_root = TRUE; + + /* Indicate position of next node */ + next_pos = H5B2_POS_ROOT; } /* end if */ /* Merge or redistribute child node pointers, if necessary */ else { @@ -2641,16 +2737,28 @@ H5B2_remove_internal_by_idx(H5B2_hdr_t *hdr, hid_t dxpl_id, new_cache_info_flags_ptr = &internal_flags; new_cache_info = &internal->cache_info; new_node_ptr = &internal->node_ptrs[idx]; + + /* Indicate position of next node */ + if(H5B2_POS_MIDDLE != curr_pos) { + if(idx == 0) { + if(H5B2_POS_LEFT == curr_pos || H5B2_POS_ROOT == curr_pos) + next_pos = H5B2_POS_LEFT; + } /* end if */ + else if(idx == internal->nrec) { + if(H5B2_POS_RIGHT == curr_pos || H5B2_POS_ROOT == curr_pos) + next_pos = H5B2_POS_RIGHT; + } /* end if */ + } /* end if */ } /* end else */ /* Attempt to remove record from child node */ if(depth > 1) { if(H5B2_remove_internal_by_idx(hdr, dxpl_id, depth_decreased, swap_loc, depth - 1, - new_cache_info, new_cache_info_flags_ptr, new_node_ptr, n, op, op_data) < 0) + new_cache_info, new_cache_info_flags_ptr, new_node_ptr, next_pos, n, op, op_data) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTDELETE, FAIL, "unable to remove record from B-tree internal node") } /* end if */ else { - if(H5B2_remove_leaf_by_idx(hdr, dxpl_id, new_node_ptr, (unsigned)n, op, op_data) < 0) + if(H5B2_remove_leaf_by_idx(hdr, dxpl_id, new_node_ptr, next_pos, (unsigned)n, op, op_data) < 0) HGOTO_ERROR(H5E_BTREE, H5E_CANTDELETE, FAIL, "unable to remove record from B-tree leaf node") } /* end else */ diff --git a/src/H5B2pkg.h b/src/H5B2pkg.h index b820853..7a538bd 100644 --- a/src/H5B2pkg.h +++ b/src/H5B2pkg.h @@ -172,6 +172,8 @@ typedef struct H5B2_hdr_t { uint8_t *page; /* Common disk page for I/O */ size_t *nat_off; /* Array of offsets of native records */ H5B2_node_info_t *node_info; /* Table of node info structs for current depth of B-tree */ + uint8_t *min_native_rec; /* Pointer to minimum native record */ + uint8_t *max_native_rec; /* Pointer to maximum native record */ /* Client information (not stored) */ const H5B2_class_t *cls; /* Class of B-tree client */ @@ -208,6 +210,14 @@ struct H5B2_t { H5F_t *f; /* Pointer to file for v2 B-tree */ }; +/* Node position, for min/max determination */ +typedef enum H5B2_nodepos_t { + H5B2_POS_ROOT, /* Node is root (i.e. both right & left-most in tree) */ + H5B2_POS_RIGHT, /* Node is right-most in tree, at a given depth */ + H5B2_POS_LEFT, /* Node is left-most in tree, at a given depth */ + H5B2_POS_MIDDLE /* Node is neither right or left-most in tree */ +} H5B2_nodepos_t; + /* Callback info for loading a free space header into the cache */ typedef struct H5B2_hdr_cache_ud_t { H5F_t *f; /* File that v2 b-tree header is within */ @@ -304,9 +314,9 @@ H5_DLL herr_t H5B2_internal_free(H5B2_internal_t *i); /* Routines for inserting records */ H5_DLL herr_t H5B2_insert_internal(H5B2_hdr_t *hdr, hid_t dxpl_id, unsigned depth, unsigned *parent_cache_info_flags_ptr, - H5B2_node_ptr_t *curr_node_ptr, void *udata); + H5B2_node_ptr_t *curr_node_ptr, H5B2_nodepos_t curr_pos, void *udata); H5_DLL herr_t H5B2_insert_leaf(H5B2_hdr_t *hdr, hid_t dxpl_id, - H5B2_node_ptr_t *curr_node_ptr, void *udata); + H5B2_node_ptr_t *curr_node_ptr, H5B2_nodepos_t curr_pos, void *udata); /* Routines for iterating over nodes/records */ H5_DLL herr_t H5B2_iterate_node(H5B2_hdr_t *hdr, hid_t dxpl_id, unsigned depth, @@ -326,19 +336,21 @@ H5_DLL herr_t H5B2_neighbor_leaf(H5B2_hdr_t *hdr, hid_t dxpl_id, /* Routines for removing records */ H5_DLL herr_t H5B2_remove_internal(H5B2_hdr_t *hdr, hid_t dxpl_id, - hbool_t *depth_decreased, void *swap_loc, unsigned depth, H5AC_info_t *parent_cache_info, - hbool_t * parent_cache_info_dirtied_ptr, H5B2_node_ptr_t *curr_node_ptr, void *udata, + hbool_t *depth_decreased, void *swap_loc, unsigned depth, + H5AC_info_t *parent_cache_info, hbool_t * parent_cache_info_dirtied_ptr, + H5B2_nodepos_t curr_pos, H5B2_node_ptr_t *curr_node_ptr, void *udata, H5B2_remove_t op, void *op_data); H5_DLL herr_t H5B2_remove_leaf(H5B2_hdr_t *hdr, hid_t dxpl_id, - H5B2_node_ptr_t *curr_node_ptr, void *udata, H5B2_remove_t op, - void *op_data); + H5B2_node_ptr_t *curr_node_ptr, H5B2_nodepos_t curr_pos, + void *udata, H5B2_remove_t op, void *op_data); H5_DLL herr_t H5B2_remove_internal_by_idx(H5B2_hdr_t *hdr, hid_t dxpl_id, - hbool_t *depth_decreased, void *swap_loc, unsigned depth, H5AC_info_t *parent_cache_info, - hbool_t * parent_cache_info_dirtied_ptr, H5B2_node_ptr_t *curr_node_ptr, hsize_t idx, + hbool_t *depth_decreased, void *swap_loc, unsigned depth, + H5AC_info_t *parent_cache_info, hbool_t * parent_cache_info_dirtied_ptr, + H5B2_node_ptr_t *curr_node_ptr, H5B2_nodepos_t curr_pos, hsize_t idx, H5B2_remove_t op, void *op_data); H5_DLL herr_t H5B2_remove_leaf_by_idx(H5B2_hdr_t *hdr, hid_t dxpl_id, - H5B2_node_ptr_t *curr_node_ptr, unsigned idx, H5B2_remove_t op, - void *op_data); + H5B2_node_ptr_t *curr_node_ptr, H5B2_nodepos_t curr_pos, + unsigned idx, H5B2_remove_t op, void *op_data); /* Routines for deleting nodes */ H5_DLL herr_t H5B2_delete_node(H5B2_hdr_t *hdr, hid_t dxpl_id, unsigned depth, diff --git a/src/H5B2stat.c b/src/H5B2stat.c index 5e48a6f..5d159ed 100644 --- a/src/H5B2stat.c +++ b/src/H5B2stat.c @@ -13,10 +13,10 @@ * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -/* Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> +/* Programmer: Quincey Koziol <koziol@hdfgroup.org> * Monday, March 6, 2006 * - * Purpose: v2 B-tree metadata statistics functions. + * Purpose: v2 B-tree metadata statistics functions. * */ @@ -24,15 +24,15 @@ /* Module Setup */ /****************/ -#define H5B2_PACKAGE /*suppress error about including H5B2pkg */ +#define H5B2_PACKAGE /* Suppress error about including H5B2pkg */ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5B2pkg.h" /* v2 B-trees */ -#include "H5Eprivate.h" /* Error handling */ +#include "H5private.h" /* Generic Functions */ +#include "H5B2pkg.h" /* v2 B-trees */ +#include "H5Eprivate.h" /* Error handling */ /****************/ @@ -71,14 +71,13 @@ /*------------------------------------------------------------------------- - * Function: H5B2_stat_info + * Function: H5B2_stat_info * - * Purpose: Retrieve metadata statistics for a v2 B-tree + * Purpose: Retrieve metadata statistics for a v2 B-tree * - * Return: Success: non-negative - * Failure: negative + * Return: SUCCEED (Can't fail) * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Monday, March 6, 2006 * *------------------------------------------------------------------------- @@ -105,7 +104,7 @@ H5B2_stat_info(H5B2_t *bt2, H5B2_stat_t *info) * Purpose: Iterate over all the records in the B-tree, collecting * storage info. * - * Return: non-negative on success, negative on error + * Return: SUCCEED/FAIL * * Programmer: Vailin Choi * June 19 2007 @@ -115,7 +114,7 @@ H5B2_stat_info(H5B2_t *bt2, H5B2_stat_t *info) herr_t H5B2_size(H5B2_t *bt2, hid_t dxpl_id, hsize_t *btree_size) { - H5B2_hdr_t *hdr; /* Pointer to the B-tree header */ + H5B2_hdr_t *hdr; /* Pointer to the B-tree header */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) diff --git a/src/H5Dbtree.c b/src/H5Dbtree.c index 039ebdc..35c2afa 100644 --- a/src/H5Dbtree.c +++ b/src/H5Dbtree.c @@ -195,7 +195,7 @@ H5B_class_t H5B_BTREE[1] = {{ H5D__btree_remove, /*remove */ H5D__btree_decode_key, /*decode */ H5D__btree_encode_key, /*encode */ - H5D__btree_debug_key, /*debug */ + H5D__btree_debug_key /*debug */ }}; @@ -228,7 +228,7 @@ H5D__btree_get_shared(const H5F_t UNUSED *f, const void *_udata) HDassert(udata); HDassert(udata->storage); - HDassert(udata->storage->idx_type == H5D_CHUNK_BTREE); + HDassert(udata->storage->idx_type == H5D_CHUNK_IDX_BTREE); HDassert(udata->storage->u.btree.shared); /* Return the pointer to the ref-count object */ @@ -868,7 +868,7 @@ done: static herr_t H5D__btree_idx_create(const H5D_chk_idx_info_t *idx_info) { - H5D_chunk_common_ud_t udata; /* User data for B-tree callback */ + H5D_chunk_common_ud_t udata; /* User data for B-tree callback */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -939,7 +939,7 @@ H5D__btree_idx_is_space_alloc(const H5O_storage_chunk_t *storage) static herr_t H5D__btree_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata) { - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1111,7 +1111,7 @@ H5D__btree_idx_iterate(const H5D_chk_idx_info_t *idx_info, static herr_t H5D__btree_idx_remove(const H5D_chk_idx_info_t *idx_info, H5D_chunk_common_ud_t *udata) { - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1453,7 +1453,7 @@ H5D_btree_debug(H5F_t *f, hid_t dxpl_id, haddr_t addr, FILE * stream, int indent /* Reset "fake" storage info */ HDmemset(&storage, 0, sizeof(storage)); - storage.idx_type = H5D_CHUNK_BTREE; + storage.idx_type = H5D_CHUNK_IDX_BTREE; /* Allocate the shared structure */ if(H5D__btree_shared_create(f, &storage, ndims) < 0) diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c index 46f0a4f..9f2a020 100644 --- a/src/H5Dchunk.c +++ b/src/H5Dchunk.c @@ -318,24 +318,22 @@ H5D__chunk_direct_write(const H5D_t *dset, hid_t dxpl_id, uint32_t filters, hsiz uint32_t data_size, const void *buf) { const H5O_layout_t *layout = &(dset->shared->layout); /* Dataset layout */ - H5D_chunk_ud_t udata; /* User data for querying chunk info */ + H5D_chunk_ud_t udata; /* User data for querying chunk info */ hsize_t chunk_idx; H5D_dxpl_cache_t _dxpl_cache; /* Data transfer property cache buffer */ H5D_dxpl_cache_t *dxpl_cache = &_dxpl_cache; /* Data transfer property cache */ const H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /*raw data chunk cache */ int space_ndims; /* Dataset's space rank */ hsize_t space_dim[H5O_LAYOUT_NDIMS]; /* Dataset's dataspace dimensions */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC_TAG(dxpl_id, dset->oloc.addr, FAIL) /* Allocate data space and initialize it if it hasn't been. */ - if(!(*dset->shared->layout.ops->is_space_alloc)(&dset->shared->layout.storage)) { + if(!(*dset->shared->layout.ops->is_space_alloc)(&dset->shared->layout.storage)) /* Allocate storage */ if(H5D__alloc_storage(dset, dxpl_id, H5D_ALLOC_WRITE, FALSE, NULL) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize storage") - } /* end if */ - /* Retrieve the dataset dimensions */ if((space_ndims = H5S_get_simple_extent_dims(dset->shared->space, space_dim, NULL)) < 0) @@ -385,11 +383,9 @@ H5D__chunk_direct_write(const H5D_t *dset, hid_t dxpl_id, uint32_t filters, hsiz /* Evict the entry from the cache if present, but do not flush * it to disk */ - if(UINT_MAX != udata.idx_hint) { - if(H5D__chunk_cache_evict(dset, dxpl_id, dxpl_cache, - rdcc->slot[udata.idx_hint], FALSE) < 0) + if(UINT_MAX != udata.idx_hint) + if(H5D__chunk_cache_evict(dset, dxpl_id, dxpl_cache, rdcc->slot[udata.idx_hint], FALSE) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTREMOVE, FAIL, "unable to evict chunk") - } /* end if */ /* Write the data to the file */ if(H5F_block_write(dset->oloc.file, H5FD_MEM_DRAW, udata.addr, data_size, dxpl_id, buf) < 0) @@ -1317,13 +1313,12 @@ H5D__create_chunk_file_map_hyper(H5D_chunk_map_t *fm, const H5D_io_info_t new_chunk_info->mspace_shared = FALSE; /* Copy the chunk's coordinates */ - for(u=0; u<fm->f_ndims; u++) - new_chunk_info->coords[u]=coords[u]; - new_chunk_info->coords[fm->f_ndims]=0; + HDmemcpy(new_chunk_info->coords, coords, sizeof(hsize_t) * fm->f_ndims); + new_chunk_info->coords[fm->f_ndims] = 0; /* Insert the new chunk into the skip list */ if(H5SL_insert(fm->sel_chunks, new_chunk_info, &new_chunk_info->index) < 0) { - H5D__free_chunk_info(new_chunk_info, NULL, NULL); + H5D__free_chunk_info(new_chunk_info, NULL, NULL); HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINSERT, FAIL, "can't insert chunk into skip list") } /* end if */ @@ -1508,7 +1503,7 @@ H5D__chunk_file_cb(void UNUSED *elem, hid_t UNUSED type_id, unsigned ndims, cons H5D_chunk_file_iter_ud_t *udata = (H5D_chunk_file_iter_ud_t *)_udata; /* User data for operation */ H5D_chunk_map_t *fm = udata->fm; /* File<->memory chunk mapping info */ H5D_chunk_info_t *chunk_info; /* Chunk information for current chunk */ - hsize_t coords_in_chunk[H5O_LAYOUT_NDIMS]; /* Coordinates of element in chunk */ + hsize_t coords_in_chunk[H5O_LAYOUT_NDIMS]; /* Coordinates of element in chunk */ hsize_t chunk_index; /* Chunk index */ unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ @@ -2238,8 +2233,6 @@ H5D__chunk_cinfo_cache_reset(H5D_chunk_cached_t *last) static herr_t H5D__chunk_cinfo_cache_update(H5D_chunk_cached_t *last, const H5D_chunk_ud_t *udata) { - unsigned u; /* Local index variable */ - FUNC_ENTER_STATIC_NOERR /* Sanity check */ @@ -2250,8 +2243,7 @@ H5D__chunk_cinfo_cache_update(H5D_chunk_cached_t *last, const H5D_chunk_ud_t *ud HDassert(udata->common.offset); /* Stored the information to cache */ - for(u = 0; u < udata->common.layout->ndims; u++) - last->offset[u] = udata->common.offset[u]; + HDmemcpy(last->offset, udata->common.offset, sizeof(hsize_t) * udata->common.layout->ndims); last->nbytes = udata->nbytes; last->filter_mask = udata->filter_mask; last->addr = udata->addr; @@ -2820,7 +2812,6 @@ H5D__chunk_lock(const H5D_io_info_t *io_info, H5D_chunk_ud_t *udata, haddr_t chunk_addr = HADDR_UNDEF; /* Address of chunk on disk */ size_t chunk_size; /*size of a chunk */ void *chunk = NULL; /*the file chunk */ - unsigned u; /*counters */ void *ret_value; /*return value */ FUNC_ENTER_PACKAGE @@ -2846,9 +2837,13 @@ H5D__chunk_lock(const H5D_io_info_t *io_info, H5D_chunk_ud_t *udata, ent = rdcc->slot[udata->idx_hint]; #ifndef NDEBUG +{ + unsigned u; /*counters */ + /* Make sure this is the right chunk */ for(u = 0; u < layout->u.chunk.ndims; u++) HDassert(io_info->store->chunk.offset[u] == ent->offset[u]); +} #endif /* NDEBUG */ /* @@ -2990,15 +2985,12 @@ H5D__chunk_lock(const H5D_io_info_t *io_info, H5D_chunk_ud_t *udata, HGOTO_ERROR(H5E_IO, H5E_CANTINIT, NULL, "unable to preempt chunk(s) from cache") /* Create a new entry */ - if(NULL == (ent = H5FL_MALLOC(H5D_rdcc_ent_t))) + if(NULL == (ent = H5FL_CALLOC(H5D_rdcc_ent_t))) HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, NULL, "can't allocate raw data chunk entry") - ent->locked = 0; - ent->dirty = FALSE; - ent->deleted = FALSE; + /* Initialize the new entry */ ent->chunk_addr = chunk_addr; - for(u = 0; u < layout->u.chunk.ndims; u++) - ent->offset[u] = io_info->store->chunk.offset[u]; + HDmemcpy(ent->offset, io_info->store->chunk.offset, sizeof(hsize_t) * layout->u.chunk.ndims); H5_ASSIGN_OVERFLOW(ent->rd_count, chunk_size, size_t, uint32_t); H5_ASSIGN_OVERFLOW(ent->wr_count, chunk_size, size_t, uint32_t); ent->chunk = (uint8_t *)chunk; @@ -3011,16 +3003,13 @@ H5D__chunk_lock(const H5D_io_info_t *io_info, H5D_chunk_ud_t *udata, rdcc->nused++; /* Add it to the linked list */ - ent->next = NULL; if(rdcc->tail) { rdcc->tail->next = ent; ent->prev = rdcc->tail; rdcc->tail = ent; } /* end if */ - else { + else rdcc->head = rdcc->tail = ent; - ent->prev = NULL; - } /* end else */ } /* end if */ else /* We did not add the chunk to cache */ @@ -3413,8 +3402,7 @@ H5D__chunk_allocate(const H5D_t *dset, hid_t dxpl_id, hbool_t full_overwrite, continue; else { /* Reset the chunk offset indices */ - HDmemset(chunk_offset, 0, ((unsigned)space_ndims - * sizeof(chunk_offset[0]))); + HDmemset(chunk_offset, 0, ((unsigned)space_ndims * sizeof(chunk_offset[0]))); chunk_offset[op_dim] = min_unalloc[op_dim]; carry = FALSE; @@ -3444,10 +3432,12 @@ H5D__chunk_allocate(const H5D_t *dset, hid_t dxpl_id, hbool_t full_overwrite, /* Make sure the chunk is really in the dataset and outside the * original dimensions */ { + unsigned u; /* Local index variable */ hbool_t outside_orig = FALSE; - for(i=0; i<space_ndims; i++) { - HDassert(chunk_offset[i] < space_dim[i]); - if(chunk_offset[i] >= old_dim[i]) + + for(u = 0; u < (unsigned)space_ndims; u++) { + HDassert(chunk_offset[u] < space_dim[u]); + if(chunk_offset[u] >= old_dim[u]) outside_orig = TRUE; } /* end for */ HDassert(outside_orig); @@ -3546,13 +3536,14 @@ H5D__chunk_allocate(const H5D_t *dset, hid_t dxpl_id, hbool_t full_overwrite, /* Increment indices */ carry = TRUE; - for(i = (int)(space_ndims - 1); i >= 0; --i) { + for(i = ((int)space_ndims - 1); i >= 0; --i) { chunk_offset[i] += chunk_dim[i]; - if(chunk_offset[i] > max_unalloc[i]) + if(chunk_offset[i] > max_unalloc[i]) { if(i == op_dim) chunk_offset[i] = min_unalloc[i]; else chunk_offset[i] = 0; + } /* end if */ else { carry = FALSE; break; @@ -4006,7 +3997,7 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) hsize_t hyper_start[H5O_LAYOUT_NDIMS]; /* Starting location of hyperslab */ uint32_t elmts_per_chunk; /* Elements in chunk */ hbool_t carry; /* Flag to indicate that chunk increment carrys to higher dimension (sorta) */ - int i; /* Local index variable */ + unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -4043,15 +4034,14 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) /* (also copy the chunk dimensions into 'hsize_t' array for creating dataspace) */ /* (also compute the dimensions which have been shrunk) */ elmts_per_chunk = 1; - for(i = 0; i < space_ndims; i++) { - elmts_per_chunk *= layout->u.chunk.dim[i]; - chunk_dim[i] = layout->u.chunk.dim[i]; - shrunk_dim[i] = space_dim[i] < old_dim[i]; + for(u = 0; u < (unsigned)space_ndims; u++) { + elmts_per_chunk *= layout->u.chunk.dim[u]; + chunk_dim[u] = layout->u.chunk.dim[u]; + shrunk_dim[u] = space_dim[u] < old_dim[u]; } /* end for */ /* Create a dataspace for a chunk & set the extent */ - if(NULL == (chunk_space = H5S_create_simple((unsigned)space_ndims, - chunk_dim, NULL))) + if(NULL == (chunk_space = H5S_create_simple((unsigned)space_ndims, chunk_dim, NULL))) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "can't create simple dataspace") /* Reset hyperslab start array */ @@ -4118,8 +4108,7 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) / chunk_dim[op_dim]); /* Determine if we need to fill chunks in this dimension */ - if((hssize_t)min_mod_chunk_off[op_dim] - == max_fill_chunk_off[op_dim]) { + if((hssize_t)min_mod_chunk_off[op_dim] == max_fill_chunk_off[op_dim]) { fill_dim[op_dim] = TRUE; has_fill = TRUE; } /* end if */ @@ -4136,8 +4125,8 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) if(has_fill) for(ent = rdcc->head; ent; ent = ent->next) /* Check for chunk offset outside of new dimensions */ - for(i = 0; i<space_ndims; i++) - if((hsize_t)ent->offset[i] >= space_dim[i]) { + for(u = 0; u < (unsigned)space_ndims; u++) + if((hsize_t)ent->offset[u] >= space_dim[u]) { /* Mark the entry as "deleted" */ ent->deleted = TRUE; break; @@ -4149,28 +4138,28 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) if(!shrunk_dim[op_dim]) continue; else { - HDassert((hsize_t) max_mod_chunk_off[op_dim] - >= min_mod_chunk_off[op_dim]); + HDassert((hsize_t) max_mod_chunk_off[op_dim] >= min_mod_chunk_off[op_dim]); /* Reset the chunk offset indices */ - HDmemset(chunk_offset, 0, ((unsigned)space_ndims - * sizeof(chunk_offset[0]))); + HDmemset(chunk_offset, 0, ((unsigned)space_ndims * sizeof(chunk_offset[0]))); chunk_offset[op_dim] = min_mod_chunk_off[op_dim]; /* Initialize "dims_outside_fill" array */ ndims_outside_fill = 0; - for(i=0; i<space_ndims; i++) - if((hssize_t)chunk_offset[i] > max_fill_chunk_off[i]) { - dims_outside_fill[i] = TRUE; + for(u = 0; u < (unsigned)space_ndims; u++) + if((hssize_t)chunk_offset[u] > max_fill_chunk_off[u]) { + dims_outside_fill[u] = TRUE; ndims_outside_fill++; } /* end if */ else - dims_outside_fill[i] = FALSE; + dims_outside_fill[u] = FALSE; carry = FALSE; } /* end if */ while(!carry) { + int i; /* Local index variable */ + /* Calculate the index of this chunk */ if(H5VM_chunk_index((unsigned)space_ndims, chunk_offset, layout->u.chunk.dim, layout->u.chunk.down_chunks, @@ -4191,8 +4180,8 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) { hbool_t outside_dim = FALSE; - for(i=0; i<space_ndims; i++) - if(chunk_offset[i] >= space_dim[i]){ + for(u = 0; u < (unsigned)space_ndims; u++) + if(chunk_offset[u] >= space_dim[u]) { outside_dim = TRUE; break; } /* end if */ @@ -4206,11 +4195,9 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) /* Evict the entry from the cache if present, but do not flush * it to disk */ - if(UINT_MAX != chk_udata.idx_hint) { - if(H5D__chunk_cache_evict(dset, dxpl_id, dxpl_cache, - rdcc->slot[chk_udata.idx_hint], FALSE) < 0) + if(UINT_MAX != chk_udata.idx_hint) + if(H5D__chunk_cache_evict(dset, dxpl_id, dxpl_cache, rdcc->slot[chk_udata.idx_hint], FALSE) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTREMOVE, FAIL, "unable to evict chunk") - } /* end if */ /* Remove the chunk from disk, if present */ if(H5F_addr_defined(chk_udata.addr)) { @@ -4218,8 +4205,7 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) idx_udata.offset = chunk_offset; /* Remove the chunk from disk */ - if((layout->storage.u.chunk.ops->remove)(&idx_info, &idx_udata) - < 0) + if((layout->storage.u.chunk.ops->remove)(&idx_info, &idx_udata) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTDELETE, FAIL, "unable to remove chunk entry from index") } /* end if */ } /* end else */ @@ -4248,8 +4234,7 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) } /* end if */ else { /* Check if we just went outside the fill dimension */ - if(!dims_outside_fill[i] && (hssize_t)chunk_offset[i] - > max_fill_chunk_off[i]) { + if(!dims_outside_fill[i] && (hssize_t)chunk_offset[i] > max_fill_chunk_off[i]) { dims_outside_fill[i] = TRUE; ndims_outside_fill++; } /* end if */ @@ -4267,8 +4252,7 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) if(min_mod_chunk_off[op_dim] == 0) break; else - max_mod_chunk_off[op_dim] = min_mod_chunk_off[op_dim] - - chunk_dim[op_dim]; + max_mod_chunk_off[op_dim] = min_mod_chunk_off[op_dim] - chunk_dim[op_dim]; } /* end for(op_dim=0...) */ /* Reset any cached chunk info for this dataset */ @@ -4278,10 +4262,9 @@ done: /* Release resources */ if(chunk_space && H5S_close(chunk_space) < 0) HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release dataspace") - if(udata_init) { + if(udata_init) if(udata.fb_info_init && H5D__fill_term(&udata.fb_info) < 0) HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "Can't release fill buffer info") - } /* end if */ FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__chunk_prune_by_extent() */ @@ -4473,7 +4456,7 @@ H5D__chunk_update_cache(H5D_t *dset, hid_t dxpl_id) H5D_rdcc_ent_t *old_ent; /* Old cache entry */ H5D_dxpl_cache_t _dxpl_cache; /* Data transfer property cache buffer */ H5D_dxpl_cache_t *dxpl_cache = &_dxpl_cache; /* Data transfer property cache */ - unsigned rank; /*current # of dimensions */ + unsigned rank; /* Current # of dimensions */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -5178,7 +5161,8 @@ H5D__chunk_dest(H5F_t *f, hid_t dxpl_id, H5D_t *dset) idx_info.storage = &dset->shared->layout.storage.u.chunk; /* Free any index structures */ - if((dset->shared->layout.storage.u.chunk.ops->dest)(&idx_info) < 0) + if(dset->shared->layout.storage.u.chunk.ops->dest && + (dset->shared->layout.storage.u.chunk.ops->dest)(&idx_info) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "unable to release chunk index info") done: diff --git a/src/H5Dint.c b/src/H5Dint.c index c35804a..63c7549 100644 --- a/src/H5Dint.c +++ b/src/H5Dint.c @@ -478,7 +478,6 @@ done: herr_t H5D__get_space_status(H5D_t *dset, H5D_space_status_t *allocation, hid_t dxpl_id) { - H5S_t *space; /* Dataset's dataspace */ hsize_t space_allocated; /* The number of bytes allocated for chunks */ hssize_t snelmts; /* Temporary holder for number of elements in dataspace */ hsize_t nelmts; /* Number of elements in dataspace */ @@ -491,11 +490,10 @@ H5D__get_space_status(H5D_t *dset, H5D_space_status_t *allocation, hid_t dxpl_id HDassert(dset); /* Get the dataset's dataspace */ - space = dset->shared->space; - HDassert(space); + HDassert(dset->shared->space); /* Get the total number of elements in dataset's dataspace */ - if((snelmts = H5S_GET_EXTENT_NPOINTS(space)) < 0) + if((snelmts = H5S_GET_EXTENT_NPOINTS(dset->shared->space)) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve number of elements in dataspace") nelmts = (hsize_t)snelmts; @@ -929,7 +927,8 @@ H5D_t * H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space, hid_t dcpl_id, hid_t dapl_id, hid_t dxpl_id) { - const H5T_t *type, *dt; /* Datatype for dataset */ + const H5T_t *type; + H5T_t *dt; H5D_t *new_dset = NULL; H5P_genplist_t *dc_plist = NULL; /* New Property list */ hbool_t has_vl_type = FALSE; /* Flag to indicate a VL-type for dataset */ @@ -1187,6 +1186,7 @@ H5D_open(const H5G_loc_t *loc, hid_t dapl_id, hid_t dxpl_id) HGOTO_ERROR(H5E_DATASET, H5E_CANTINC, NULL, "can't increment object count") } /* end else */ + /* Set the dataset to return */ ret_value = dataset; done: @@ -1228,6 +1228,7 @@ H5D__open_oid(H5D_t *dataset, hid_t dapl_id, hid_t dxpl_id) H5O_fill_t *fill_prop; /* Pointer to dataset's fill value info */ unsigned alloc_time_state; /* Allocation time state */ htri_t msg_exists; /* Whether a particular type of message exists */ + hbool_t layout_init = FALSE; /* Flag to indicate that chunk information was initialized */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC_TAG(dxpl_id, dataset->oloc.addr, FAIL) @@ -1265,6 +1266,9 @@ H5D__open_oid(H5D_t *dataset, hid_t dapl_id, hid_t dxpl_id) if(H5D__layout_oh_read(dataset, dxpl_id, dapl_id, plist) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get layout/pline/efl info") + /* Indicate that the layout information was initialized */ + layout_init = TRUE; + /* Point at dataset's copy, to cache it for later */ fill_prop = &dataset->shared->dcpl_cache.fill; @@ -1340,6 +1344,9 @@ done: if(H5F_addr_defined(dataset->oloc.addr) && H5O_close(&(dataset->oloc)) < 0) HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release object header") if(dataset->shared) { + if(dataset->shared->layout.type == H5D_CHUNKED && layout_init) + if(H5D__chunk_dest(dataset->oloc.file, dxpl_id, dataset) < 0) + HDONE_ERROR(H5E_DATASET, H5E_CANTRELEASE, FAIL, "unable to destroy chunk cache") if(dataset->shared->space && H5S_close(dataset->shared->space) < 0) HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release dataspace") if(dataset->shared->type) { @@ -2221,6 +2228,7 @@ H5D__set_extent(H5D_t *dset, const hsize_t *size, hid_t dxpl_id) */ /* Update the index values for the cached chunks for this dataset */ if(H5D_CHUNKED == dset->shared->layout.type) { + /* Update the cached chunk info */ if(H5D__chunk_set_info(dset) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "unable to update # of chunks") if(H5D__chunk_update_cache(dset, dxpl_id) < 0) @@ -2239,11 +2247,10 @@ H5D__set_extent(H5D_t *dset, const hsize_t *size, hid_t dxpl_id) *------------------------------------------------------------------------- */ if(shrink && H5D_CHUNKED == dset->shared->layout.type && - (*dset->shared->layout.ops->is_space_alloc)(&dset->shared->layout.storage)) { + (*dset->shared->layout.ops->is_space_alloc)(&dset->shared->layout.storage)) /* Remove excess chunks */ if(H5D__chunk_prune_by_extent(dset, dxpl_id, curr_dims) < 0) HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "unable to remove chunks") - } /* end if */ /* Mark the dataspace as dirty, for later writing to the file */ if(H5D__mark(dset, dxpl_id, H5D_MARK_SPACE) < 0) @@ -2676,16 +2683,14 @@ H5D_get_space(H5D_t *dset) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to get data space") /* Create an atom */ - if((ret_value = H5I_register (H5I_DATASPACE, space, TRUE)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register data space") + if((ret_value = H5I_register(H5I_DATASPACE, space, TRUE)) < 0) + HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register dataspace") done: - if(ret_value < 0) { - if(space!=NULL) { + if(ret_value < 0) + if(space != NULL) if(H5S_close(space) < 0) HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release dataspace") - } /* end if */ - } /* end if */ FUNC_LEAVE_NOAPI(ret_value) } /* end H5D_get_space() */ diff --git a/src/H5Dio.c b/src/H5Dio.c index fb3c5d3..ade7351 100644 --- a/src/H5Dio.c +++ b/src/H5Dio.c @@ -297,7 +297,7 @@ H5D__pre_write(H5D_t *dset, hbool_t direct_write, hid_t mem_type_id, int ndims = 0; hsize_t dims[H5O_LAYOUT_NDIMS]; hsize_t internal_offset[H5O_LAYOUT_NDIMS]; - int i; + unsigned u; /* Get the dataset transfer property list */ if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id))) @@ -319,16 +319,16 @@ H5D__pre_write(H5D_t *dset, hbool_t direct_write, hid_t mem_type_id, if((ndims = H5S_get_simple_extent_dims(dset->shared->space, dims, NULL)) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't retrieve dataspace extent dims") - for(i = 0; i < ndims; i++) { + for(u = 0; u < ndims; u++) { /* Make sure the offset doesn't exceed the dataset's dimensions */ - if(direct_offset[i] > dims[i]) + if(direct_offset[u] > dims[u]) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "offset exceeds dimensions of dataset") /* Make sure the offset fall right on a chunk's boundary */ - if(direct_offset[i] % dset->shared->layout.u.chunk.dim[i]) + if(direct_offset[u] % dset->shared->layout.u.chunk.dim[u]) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "offset doesn't fall on chunks's boundary") - internal_offset[i] = direct_offset[i]; + internal_offset[u] = direct_offset[u]; } /* end for */ /* Terminate the offset with a zero */ diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h index ae37c98..daee34f 100644 --- a/src/H5Dpkg.h +++ b/src/H5Dpkg.h @@ -362,7 +362,7 @@ typedef struct H5D_chunk_map_t { } H5D_chunk_map_t; /* Cached information about a particular chunk */ -typedef struct H5D_chunk_cached_t{ +typedef struct H5D_chunk_cached_t { hbool_t valid; /*whether cache info is valid*/ hsize_t offset[H5O_LAYOUT_NDIMS]; /*logical offset to start*/ uint32_t nbytes; /*size of stored data */ diff --git a/src/H5Dpublic.h b/src/H5Dpublic.h index e7ae3ae..1b5fed7 100644 --- a/src/H5Dpublic.h +++ b/src/H5Dpublic.h @@ -56,7 +56,8 @@ typedef enum H5D_layout_t { /* Types of chunk index data structures */ typedef enum H5D_chunk_index_t { - H5D_CHUNK_BTREE = 0 /* v1 B-tree index */ + H5D_CHUNK_IDX_BTREE = 0, /* v1 B-tree index */ + H5D_CHUNK_IDX_NTYPES /* this one must be last! */ } H5D_chunk_index_t; /* Values for the space allocation time property */ @@ -1397,17 +1397,7 @@ H5Epush2(hid_t err_stack, const char *file, const char *func, unsigned line, HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") /* If the description doesn't fit into the initial buffer size, allocate more space and try again */ - while((desc_len = HDvsnprintf(tmp, (size_t)tmp_len, fmt, ap)) -#ifdef H5_VSNPRINTF_WORKS - > -#else /* H5_VSNPRINTF_WORKS */ - >= -#endif /* H5_VSNPRINTF_WORKS */ - (tmp_len - 1) -#ifndef H5_VSNPRINTF_WORKS - || (desc_len < 0) -#endif /* H5_VSNPRINTF_WORKS */ - ) { + while((desc_len = HDvsnprintf(tmp, (size_t)tmp_len, fmt, ap)) > (tmp_len - 1)) { /* shutdown & restart the va_list */ va_end(ap); va_start(ap, fmt); @@ -1416,11 +1406,7 @@ H5Epush2(hid_t err_stack, const char *file, const char *func, unsigned line, H5MM_xfree(tmp); /* Allocate a description of the appropriate length */ -#ifdef H5_VSNPRINTF_WORKS tmp_len = desc_len + 1; -#else /* H5_VSNPRINTF_WORKS */ - tmp_len = 2 * tmp_len; -#endif /* H5_VSNPRINTF_WORKS */ if(NULL == (tmp = H5MM_malloc((size_t)tmp_len))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") } /* end while */ diff --git a/src/H5Edeprec.c b/src/H5Edeprec.c index 3e9444b..6a83745 100644 --- a/src/H5Edeprec.c +++ b/src/H5Edeprec.c @@ -152,6 +152,7 @@ H5Eget_major(H5E_major_t maj) char *ret_value; /* Return value */ FUNC_ENTER_API_NOCLEAR(NULL) + H5TRACE1("*s", "i", maj); /* Get the message object */ if(NULL == (msg = (H5E_msg_t *)H5I_object_verify(maj, H5I_ERROR_MSG))) @@ -204,6 +205,7 @@ H5Eget_minor(H5E_minor_t min) char *ret_value; /* Return value */ FUNC_ENTER_API_NOCLEAR(NULL) + H5TRACE1("*s", "i", min); /* Get the message object */ if(NULL == (msg = (H5E_msg_t *)H5I_object_verify(min, H5I_ERROR_MSG))) diff --git a/src/H5Eint.c b/src/H5Eint.c index 88dfdee..2092566 100644 --- a/src/H5Eint.c +++ b/src/H5Eint.c @@ -741,17 +741,7 @@ H5E_printf_stack(H5E_t *estack, const char *file, const char *func, unsigned lin HGOTO_DONE(FAIL) /* If the description doesn't fit into the initial buffer size, allocate more space and try again */ - while((desc_len = HDvsnprintf(tmp, (size_t)tmp_len, fmt, ap)) -#ifdef H5_VSNPRINTF_WORKS - > -#else /* H5_VSNPRINTF_WORKS */ - >= -#endif /* H5_VSNPRINTF_WORKS */ - (tmp_len - 1) -#ifndef H5_VSNPRINTF_WORKS - || (desc_len < 0) -#endif /* H5_VSNPRINTF_WORKS */ - ) { + while((desc_len = HDvsnprintf(tmp, (size_t)tmp_len, fmt, ap)) > (tmp_len - 1)) { /* shutdown & restart the va_list */ va_end(ap); va_start(ap, fmt); @@ -760,11 +750,7 @@ H5E_printf_stack(H5E_t *estack, const char *file, const char *func, unsigned lin H5MM_xfree(tmp); /* Allocate a description of the appropriate length */ -#ifdef H5_VSNPRINTF_WORKS tmp_len = desc_len + 1; -#else /* H5_VSNPRINTF_WORKS */ - tmp_len = 2 * tmp_len; -#endif /* H5_VSNPRINTF_WORKS */ if(NULL == (tmp = H5MM_malloc((size_t)tmp_len))) HGOTO_DONE(FAIL) } /* end while */ diff --git a/src/H5Eprivate.h b/src/H5Eprivate.h index 0e6def6..2065b08 100644 --- a/src/H5Eprivate.h +++ b/src/H5Eprivate.h @@ -186,7 +186,7 @@ H5_DLL herr_t H5E_init(void); H5_DLL herr_t H5E_push_stack(H5E_t *estack, const char *file, const char *func, unsigned line, hid_t cls_id, hid_t maj_id, hid_t min_id, const char *desc); H5_DLL herr_t H5E_printf_stack(H5E_t *estack, const char *file, const char *func, - unsigned line, hid_t cls_id, hid_t maj_id, hid_t min_id, const char *fmt, ...); + unsigned line, hid_t cls_id, hid_t maj_id, hid_t min_id, const char *fmt, ...)__attribute__((format (printf, 8, 9))); H5_DLL herr_t H5E_clear_stack(H5E_t *estack); H5_DLL herr_t H5E_dump_api_stack(hbool_t is_api); diff --git a/src/H5Epublic.h b/src/H5Epublic.h index 17a35d9..1639ab4 100644 --- a/src/H5Epublic.h +++ b/src/H5Epublic.h @@ -165,7 +165,7 @@ H5_DLL herr_t H5Eclose_stack(hid_t stack_id); H5_DLL ssize_t H5Eget_class_name(hid_t class_id, char *name, size_t size); H5_DLL herr_t H5Eset_current_stack(hid_t err_stack_id); H5_DLL herr_t H5Epush2(hid_t err_stack, const char *file, const char *func, unsigned line, - hid_t cls_id, hid_t maj_id, hid_t min_id, const char *msg, ...); + hid_t cls_id, hid_t maj_id, hid_t min_id, const char *msg, ...)__attribute__((format (printf, 8, 9))); H5_DLL herr_t H5Epop(hid_t err_stack, size_t count); H5_DLL herr_t H5Eprint2(hid_t err_stack, FILE *stream); H5_DLL herr_t H5Ewalk2(hid_t err_stack, H5E_direction_t direction, H5E_walk2_t func, @@ -886,6 +886,7 @@ H5FDopen(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr) H5FD_t *ret_value=NULL; FUNC_ENTER_API(NULL) + H5TRACE4("*x", "*sIuia", name, flags, fapl_id, maxaddr); /* Check arguments */ if(H5P_DEFAULT == fapl_id) diff --git a/src/H5FDmpio.c b/src/H5FDmpio.c index 70cf49a..d81509a 100644 --- a/src/H5FDmpio.c +++ b/src/H5FDmpio.c @@ -1049,8 +1049,7 @@ H5FD_mpio_open(const char *name, unsigned flags, hid_t fapl_id, char debug_str[128]; int flag, i; if (MPI_INFO_NULL != info_dup) { - /*OKAY: CAST DISCARDS CONST*/ - MPI_Info_get(fa->info, (char *)H5F_MPIO_DEBUG_KEY, 127, debug_str, &flag); + MPI_Info_get(fa->info, H5F_MPIO_DEBUG_KEY, sizeof(debug_str)-1, debug_str, &flag); if (flag) { fprintf(stdout, "H5FD_mpio debug flags=%s\n", debug_str ); for (i=0; @@ -1063,8 +1062,7 @@ H5FD_mpio_open(const char *name, unsigned flags, hid_t fapl_id, } #endif - /*OKAY: CAST DISCARDS CONST*/ - if(MPI_SUCCESS != (mpi_code = MPI_File_open(comm_dup, (char*)name, mpi_amode, info_dup, &fh))) + if(MPI_SUCCESS != (mpi_code = MPI_File_open(comm_dup, name, mpi_amode, info_dup, &fh))) HMPI_GOTO_ERROR(NULL, "MPI_File_open failed", mpi_code) file_opened=1; @@ -1460,12 +1458,13 @@ H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t UNUSED type, hid_t dxpl_id, haddr_t add MPI_Count bytes_read; /* Number of bytes read in */ MPI_Count type_size; /* MPI datatype used for I/O's size */ MPI_Count io_size; /* Actual number of bytes requested */ + MPI_Count n; #else int bytes_read; /* Number of bytes read in */ int type_size; /* MPI datatype used for I/O's size */ int io_size; /* Actual number of bytes requested */ -#endif int n; +#endif H5P_genplist_t *plist = NULL; /* Property list pointer */ hbool_t use_view_this_time = FALSE; herr_t ret_value = SUCCEED; @@ -1506,7 +1505,10 @@ H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t UNUSED type, hid_t dxpl_id, haddr_t add /* Obtain the data transfer properties */ if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list") - xfer_mode = (H5FD_mpio_xfer_t)H5P_peek_unsigned(plist, H5D_XFER_IO_XFER_MODE_NAME); + + /* get the transfer mode from the dxpl */ + if(H5P_get(plist, H5D_XFER_IO_XFER_MODE_NAME, &xfer_mode)<0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get MPI-I/O transfer mode") /* * Set up for a fancy xfer using complex types, or single byte block. We @@ -1521,15 +1523,14 @@ H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t UNUSED type, hid_t dxpl_id, haddr_t add use_view_this_time = TRUE; /* prepare for a full-blown xfer using btype, ftype, and disp */ - if(H5P_get(plist,H5FD_MPI_XFER_MEM_MPI_TYPE_NAME,&buf_type)<0) + if(H5P_get(plist, H5FD_MPI_XFER_MEM_MPI_TYPE_NAME, &buf_type)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get MPI-I/O type property") - if(H5P_get(plist,H5FD_MPI_XFER_FILE_MPI_TYPE_NAME,&file_type)<0) + if(H5P_get(plist, H5FD_MPI_XFER_FILE_MPI_TYPE_NAME, &file_type)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get MPI-I/O type property") /* * Set the file view when we are using MPI derived types */ - /*OKAY: CAST DISCARDS CONST QUALIFIER*/ if (MPI_SUCCESS != (mpi_code=MPI_File_set_view(file->f, mpi_off, MPI_BYTE, file_type, H5FD_mpi_native_g, file->info))) HMPI_GOTO_ERROR(FAIL, "MPI_File_set_view failed", mpi_code) @@ -1548,9 +1549,12 @@ H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t UNUSED type, hid_t dxpl_id, haddr_t add if (H5FD_mpio_Debug[(int)'t']) fprintf(stdout, "H5FD_mpio_read: using MPIO collective mode\n"); #endif - /* Peek the collective_opt property to check whether the application wants to do IO individually. */ + /* Get the collective_opt property to check whether the application wants to do IO individually. */ HDassert(plist); - coll_opt_mode = (H5FD_mpio_collective_opt_t)H5P_peek_unsigned(plist, H5D_XFER_MPIO_COLLECTIVE_OPT_NAME); + + /* get the transfer mode from the dxpl */ + if(H5P_get(plist, H5D_XFER_MPIO_COLLECTIVE_OPT_NAME, &coll_opt_mode)<0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get MPI-I/O collective_op property") if(coll_opt_mode == H5FD_MPIO_COLLECTIVE_IO) { #ifdef H5FDmpio_DEBUG @@ -1573,7 +1577,6 @@ H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t UNUSED type, hid_t dxpl_id, haddr_t add /* * Reset the file view when we used MPI derived types */ - /*OKAY: CAST DISCARDS CONST QUALIFIER*/ if(MPI_SUCCESS != (mpi_code = MPI_File_set_view(file->f, (MPI_Offset)0, MPI_BYTE, MPI_BYTE, H5FD_mpi_native_g, file->info))) HMPI_GOTO_ERROR(FAIL, "MPI_File_set_view failed", mpi_code) } else { @@ -1799,8 +1802,9 @@ H5FD_mpio_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list") - /* Obtain the data transfer properties */ - xfer_mode = (H5FD_mpio_xfer_t)H5P_peek_unsigned(plist, H5D_XFER_IO_XFER_MODE_NAME); + /* get the transfer mode from the dxpl */ + if(H5P_get(plist, H5D_XFER_IO_XFER_MODE_NAME, &xfer_mode)<0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get MPI-I/O transfer mode") /* * Set up for a fancy xfer using complex types, or single byte block. We @@ -1823,7 +1827,6 @@ H5FD_mpio_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, /* * Set the file view when we are using MPI derived types */ - /*OKAY: CAST DISCARDS CONST QUALIFIER*/ if(MPI_SUCCESS != (mpi_code = MPI_File_set_view(file->f, mpi_off, MPI_BYTE, file_type, H5FD_mpi_native_g, file->info))) HMPI_GOTO_ERROR(FAIL, "MPI_File_set_view failed", mpi_code) @@ -1853,17 +1856,18 @@ H5FD_mpio_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, if(H5FD_mpio_Debug[(int)'t']) fprintf(stdout, "H5FD_mpio_write: using MPIO collective mode\n"); #endif - /* Peek the collective_opt property to check whether the application wants to do IO individually. */ + /* Get the collective_opt property to check whether the application wants to do IO individually. */ HDassert(plist); - coll_opt_mode = (H5FD_mpio_collective_opt_t)H5P_peek_unsigned(plist, H5D_XFER_MPIO_COLLECTIVE_OPT_NAME); + /* get the transfer mode from the dxpl */ + if(H5P_get(plist, H5D_XFER_MPIO_COLLECTIVE_OPT_NAME, &coll_opt_mode)<0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get MPI-I/O collective_op property") - /*OKAY: CAST DISCARDS CONST QUALIFIER*/ if(coll_opt_mode == H5FD_MPIO_COLLECTIVE_IO) { #ifdef H5FDmpio_DEBUG if(H5FD_mpio_Debug[(int)'t']) fprintf(stdout, "H5FD_mpio_write: doing MPI collective IO\n"); #endif - if(MPI_SUCCESS != (mpi_code = MPI_File_write_at_all(file->f, mpi_off, (void*)buf, size_i, buf_type, &mpi_stat))) + if(MPI_SUCCESS != (mpi_code = MPI_File_write_at_all(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat))) HMPI_GOTO_ERROR(FAIL, "MPI_File_write_at_all failed", mpi_code) } /* end if */ else { @@ -1871,17 +1875,15 @@ H5FD_mpio_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, if(H5FD_mpio_Debug[(int)'t']) fprintf(stdout, "H5FD_mpio_write: doing MPI independent IO\n"); #endif - if(MPI_SUCCESS != (mpi_code = MPI_File_write_at(file->f, mpi_off, (void*)buf, size_i, buf_type, &mpi_stat))) + if(MPI_SUCCESS != (mpi_code = MPI_File_write_at(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat))) HMPI_GOTO_ERROR(FAIL, "MPI_File_write_at failed", mpi_code) } /* end else */ /* Reset the file view when we used MPI derived types */ - /*OKAY: CAST DISCARDS CONST QUALIFIER*/ if(MPI_SUCCESS != (mpi_code = MPI_File_set_view(file->f, (MPI_Offset)0, MPI_BYTE, MPI_BYTE, H5FD_mpi_native_g, file->info))) HMPI_GOTO_ERROR(FAIL, "MPI_File_set_view failed", mpi_code) } else { - /*OKAY: CAST DISCARDS CONST QUALIFIER*/ - if(MPI_SUCCESS != (mpi_code = MPI_File_write_at(file->f, mpi_off, (void*)buf, size_i, buf_type, &mpi_stat))) + if(MPI_SUCCESS != (mpi_code = MPI_File_write_at(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat))) HMPI_GOTO_ERROR(FAIL, "MPI_File_write_at failed", mpi_code) } diff --git a/src/H5Fprivate.h b/src/H5Fprivate.h index 5076712..20b840b 100644 --- a/src/H5Fprivate.h +++ b/src/H5Fprivate.h @@ -491,6 +491,8 @@ if it is changed, the code must compensate. -QAK */ +#define HDF5_BTREE_IK_MAX_ENTRIES 65536 /* 2^16 - 2 bytes for storing entries (children) */ + /* See format specification on version 1 B-trees */ /* Default file space handling strategy */ #define H5F_FILE_SPACE_STRATEGY_DEF H5F_FILE_SPACE_ALL diff --git a/src/H5Gdeprec.c b/src/H5Gdeprec.c index c580f73..411fc94 100644 --- a/src/H5Gdeprec.c +++ b/src/H5Gdeprec.c @@ -258,7 +258,7 @@ H5Gcreate1(hid_t loc_id, const char *name, size_t size_hint) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get group info") /* Set the non-default local heap size hint */ - ginfo.lheap_size_hint = size_hint; + H5_ASSIGN_OVERFLOW(ginfo.lheap_size_hint, size_hint, size_t, uint32_t); if(H5P_set(gc_plist, H5G_CRT_GROUP_INFO_NAME, &ginfo) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set group info") } /* end if */ diff --git a/src/H5Gloc.c b/src/H5Gloc.c index 3786967..0559f3e 100644 --- a/src/H5Gloc.c +++ b/src/H5Gloc.c @@ -179,7 +179,7 @@ H5G_loc_real(void *obj, H5I_type_t type, H5G_loc_t *loc) H5T_t *dt = NULL; /* Get the actual datatype object if the VOL object is set */ - dt = (H5T_t *)H5T_get_actual_type((H5T_t *)obj); + dt = H5T_get_actual_type((H5T_t *)obj); if(NULL == (loc->oloc = H5T_oloc(dt))) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "unable to get object location of datatype") @@ -182,7 +182,7 @@ HDmemset(heap->chunk, 0, size); * which was always at least H5HG_ALIGNMENT aligned then we could just * align the pointer, but this might not be the case. */ - n = H5HG_ALIGN(p - heap->chunk) - (p - heap->chunk); + n = H5HG_ALIGN(p - heap->chunk) - (size_t)(p - heap->chunk); #ifdef OLD_WAY /* Don't bother zeroing out the rest of the info in the heap -QAK */ HDmemset(p, 0, n); @@ -776,7 +776,7 @@ H5HG_remove (H5F_t *f, hid_t dxpl_id, H5HG_t *hobj) else heap->obj[0].size += need; HDmemmove(obj_start, obj_start + need, - heap->size - ((obj_start + need) - heap->chunk)); + heap->size - (size_t)((obj_start + need) - heap->chunk)); if(heap->obj[0].size >= H5HG_SIZEOF_OBJHDR(f)) { p = heap->obj[0].begin; UINT16ENCODE(p, 0); /*id*/ diff --git a/src/H5HGpkg.h b/src/H5HGpkg.h index 5d4234f..f3546a2 100644 --- a/src/H5HGpkg.h +++ b/src/H5HGpkg.h @@ -77,8 +77,7 @@ H5FL_BLK_EXTERN(gheap_chunk); * largest data type is eight bytes. */ #define H5HG_ALIGNMENT 8 -#define H5HG_ALIGN(X) (H5HG_ALIGNMENT*(((X)+H5HG_ALIGNMENT-1)/ \ - H5HG_ALIGNMENT)) +#define H5HG_ALIGN(X) (H5HG_ALIGNMENT*(((X)+H5HG_ALIGNMENT-1)/H5HG_ALIGNMENT)) #define H5HG_ISALIGNED(X) ((X)==H5HG_ALIGN(X)) /* @@ -86,20 +85,20 @@ H5FL_BLK_EXTERN(gheap_chunk); * that the stuff that follows the header is aligned. */ #define H5HG_SIZEOF_HDR(f) \ - H5HG_ALIGN(4 + /*magic number */ \ - 1 + /*version number */ \ - 3 + /*reserved */ \ - H5F_SIZEOF_SIZE(f)) /*collection size */ + (size_t)H5HG_ALIGN(4 + /*magic number */ \ + 1 + /*version number */ \ + 3 + /*reserved */ \ + H5F_SIZEOF_SIZE(f)) /*collection size */ /* * The overhead associated with each object in the heap, always a multiple of * the alignment so that the stuff that follows the header is aligned. */ #define H5HG_SIZEOF_OBJHDR(f) \ - H5HG_ALIGN(2 + /*object id number */ \ - 2 + /*reference count */ \ - 4 + /*reserved */ \ - H5F_SIZEOF_SIZE(f)) /*object data size */ + (size_t)H5HG_ALIGN(2 + /*object id number */ \ + 2 + /*reference count */ \ + 4 + /*reserved */ \ + H5F_SIZEOF_SIZE(f)) /*object data size */ /* * The initial guess for the number of messages in a collection. We assume @@ -108,8 +107,8 @@ H5FL_BLK_EXTERN(gheap_chunk); * some overhead and each message has some overhead. The `+2' accounts for * rounding and for the free space object. */ -#define H5HG_NOBJS(f,z) (int)((((z)-H5HG_SIZEOF_HDR(f))/ \ - H5HG_SIZEOF_OBJHDR(f)+2)) +#define H5HG_NOBJS(f,z) ((((z)-H5HG_SIZEOF_HDR(f))/ \ + H5HG_SIZEOF_OBJHDR(f)+2)) /****************************/ @@ -901,6 +901,7 @@ H5Iobject_verify(hid_t id, H5I_type_t id_type) void * ret_value; /* Return value */ FUNC_ENTER_API(NULL) + H5TRACE2("*x", "iIt", id, id_type); if(H5I_IS_LIB_TYPE(id_type)) HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, NULL, "cannot call public function on library type") @@ -1041,6 +1042,7 @@ H5Iremove_verify(hid_t id, H5I_type_t id_type) void * ret_value; /* Return value */ FUNC_ENTER_API(NULL) + H5TRACE2("*x", "iIt", id, id_type); if(H5I_IS_LIB_TYPE(id_type)) HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, NULL, "cannot call public function on library type") @@ -1889,6 +1891,7 @@ H5Isearch(H5I_type_t type, H5I_search_func_t func, void *key) void *ret_value; /* Return value */ FUNC_ENTER_API(NULL) + H5TRACE3("*x", "Itx*x", type, func, key); /* Check arguments */ if(H5I_IS_LIB_TYPE(type)) diff --git a/src/H5MFaggr.c b/src/H5MFaggr.c index f015b19..29d21fd 100644 --- a/src/H5MFaggr.c +++ b/src/H5MFaggr.c @@ -46,7 +46,7 @@ /******************/ /* Local Typedefs */ /******************/ -#define EXTEND_THRESHOLD .10 +#define EXTEND_THRESHOLD 0.10F /********************/ @@ -31,93 +31,107 @@ #include "H5Eprivate.h" #include "H5MMprivate.h" -#ifndef NDEBUG /*------------------------------------------------------------------------- - * Function: H5MM_malloc + * Function: H5MM_malloc * - * Purpose: Just like the POSIX version of malloc(3). This routine - * specifically checks for allocations of 0 bytes and fails - * in that case. This routine is not called when NDEBUG is - * defined. + * Purpose: Similar to the C89 version of malloc(). * - * Return: Success: Ptr to new memory + * On size of 0, we return a NULL pointer instead of the + * standard-allowed 'special' pointer since that's more + * difficult to check as a return value. This is still + * considered an error condition since allocations of zero + * bytes usually indicate problems. + * + * Return: Success: Pointer new memory * - * Failure: NULL + * Failure: NULL * - * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu - * Nov 8 2003 - * - * Modifications: + * Programmer: Quincey Koziol + * Nov 8 2003 * *------------------------------------------------------------------------- */ void * H5MM_malloc(size_t size) { + void *ret_value; + + HDassert(size); + /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOERR - HDassert(size); + if(size) + ret_value = HDmalloc(size); + else + ret_value = NULL; - FUNC_LEAVE_NOAPI(HDmalloc(size)); + FUNC_LEAVE_NOAPI(ret_value); } /* end H5MM_malloc() */ /*------------------------------------------------------------------------- - * Function: H5MM_calloc + * Function: H5MM_calloc * - * Purpose: Similar to the POSIX version of calloc(3), except this routine - * just takes a 'size' parameter. This routine - * specifically checks for allocations of 0 bytes and fails - * in that case. This routine is not called when NDEBUG is - * defined. + * Purpose: Similar to the C89 version of calloc(), except this + * routine just takes a 'size' parameter. * - * Return: Success: Ptr to new memory + * On size of 0, we return a NULL pointer instead of the + * standard-allowed 'special' pointer since that's more + * difficult to check as a return value. This is still + * considered an error condition since allocations of zero + * bytes usually indicate problems. * - * Failure: NULL * - * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu - * Nov 8 2003 + * Return: Success: Pointer new memory * - * Modifications: + * Failure: NULL + * + * Programmer: Quincey Koziol + * Nov 8 2003 * *------------------------------------------------------------------------- */ void * H5MM_calloc(size_t size) { + void *ret_value; + + HDassert(size); + /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOERR - HDassert(size); + if(size) + ret_value = HDcalloc((size_t)1, size); + else + ret_value = NULL; - FUNC_LEAVE_NOAPI(HDcalloc(1,size)); + FUNC_LEAVE_NOAPI(ret_value); } /* end H5MM_calloc() */ -#endif /* NDEBUG */ /*------------------------------------------------------------------------- - * Function: H5MM_realloc + * Function: H5MM_realloc * - * Purpose: Just like the POSIX version of realloc(3). Specifically, the - * following calls are equivalent + * Purpose: Similar semantics as C89's realloc(). Specifically, the + * following calls are equivalent: * - * H5MM_realloc (NULL, size) <==> H5MM_malloc (size) - * H5MM_realloc (ptr, 0) <==> H5MM_xfree (ptr) - * H5MM_realloc (NULL, 0) <==> NULL + * H5MM_realloc(NULL, size) <==> H5MM_malloc(size) + * H5MM_realloc(ptr, 0) <==> H5MM_xfree(ptr) + * H5MM_realloc(NULL, 0) <==> NULL * - * Return: Success: Ptr to new memory or NULL if the memory - * was freed or HDrealloc couldn't allocate - * memory. + * Note that the (NULL, 0) combination is undefined behavior + * in the C standard. * - * Failure: NULL + * Return: Success: Ptr to new memory if size > 0 + * NULL if size is zero * - * Programmer: Robb Matzke - * matzke@llnl.gov - * Jul 10 1997 + * Failure: NULL (input buffer is unchanged on failure) + * + * Programmer: Robb Matzke + * Jul 10 1997 * *------------------------------------------------------------------------- */ @@ -129,16 +143,19 @@ H5MM_realloc(void *mem, size_t size) /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOERR - if(NULL == mem) { - if(0 == size) + HDassert(mem || size); + + if(NULL == mem && 0 == size) { + /* Not defined in the standard, return NULL */ + ret_value = NULL; + } + else { + ret_value = HDrealloc(mem, size); + + /* Some platforms do not return NULL if size is zero. */ + if(0 == size) ret_value = NULL; - else - ret_value = H5MM_malloc(size); - } /* end if */ - else if(0 == size) - ret_value = H5MM_xfree(mem); - else - ret_value = HDrealloc(mem, size); + } FUNC_LEAVE_NOAPI(ret_value) } /* end H5MM_realloc() */ diff --git a/src/H5MMprivate.h b/src/H5MMprivate.h index a3c39f0..0d608b2 100644 --- a/src/H5MMprivate.h +++ b/src/H5MMprivate.h @@ -33,19 +33,13 @@ /* Private headers needed by this file */ #include "H5private.h" -#ifdef NDEBUG -#define H5MM_malloc(Z) HDmalloc(Z) -#define H5MM_calloc(Z) HDcalloc((size_t)1,Z) -#endif /* NDEBUG */ #define H5MM_free(Z) HDfree(Z) /* * Library prototypes... */ -#ifndef NDEBUG H5_DLL void *H5MM_malloc(size_t size); H5_DLL void *H5MM_calloc(size_t size); -#endif /* NDEBUG */ H5_DLL void *H5MM_realloc(void *mem, size_t size); H5_DLL char *H5MM_xstrdup(const char *s); H5_DLL char *H5MM_strdup(const char *s); diff --git a/src/H5Oalloc.c b/src/H5Oalloc.c index 5c00fb2..76f392d 100644 --- a/src/H5Oalloc.c +++ b/src/H5Oalloc.c @@ -762,7 +762,7 @@ H5O_alloc_new_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh, size_t size, size_t *new size_t idx; /* Message number */ uint8_t *p = NULL; /*ptr into new chunk */ H5O_cont_t *cont = NULL; /*native continuation message */ - unsigned chunkno; /* Chunk allocated */ + size_t chunkno; /* Chunk allocated */ haddr_t new_chunk_addr; unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5Olayout.c b/src/H5Olayout.c index 4c43873..816242f 100644 --- a/src/H5Olayout.c +++ b/src/H5Olayout.c @@ -147,7 +147,7 @@ H5O_layout_decode(H5F_t *f, hid_t UNUSED dxpl_id, H5O_t UNUSED *open_oh, /* Set the chunk operations */ /* (Only "btree" indexing type currently supported in this version) */ - mesg->storage.u.chunk.idx_type = H5D_CHUNK_BTREE; + mesg->storage.u.chunk.idx_type = H5D_CHUNK_IDX_BTREE; mesg->storage.u.chunk.ops = H5D_COPS_BTREE; } /* end if */ else { @@ -234,7 +234,7 @@ H5O_layout_decode(H5F_t *f, hid_t UNUSED dxpl_id, H5O_t UNUSED *open_oh, /* Set the chunk operations */ /* (Only "btree" indexing type supported with v3 of message format) */ - mesg->storage.u.chunk.idx_type = H5D_CHUNK_BTREE; + mesg->storage.u.chunk.idx_type = H5D_CHUNK_IDX_BTREE; mesg->storage.u.chunk.ops = H5D_COPS_BTREE; /* Set the layout operations */ @@ -715,7 +715,7 @@ H5O_layout_debug(H5F_t UNUSED *f, hid_t UNUSED dxpl_id, const void *_mesg, /* Index information */ switch(mesg->storage.u.chunk.idx_type) { - case H5D_CHUNK_BTREE: + case H5D_CHUNK_IDX_BTREE: HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth, "Index Type:", "v1 B-tree"); HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth, diff --git a/src/H5Omtime.c b/src/H5Omtime.c index 612d656..c9375f9 100644 --- a/src/H5Omtime.c +++ b/src/H5Omtime.c @@ -200,8 +200,8 @@ H5O_mtime_decode(H5F_t UNUSED *f, hid_t UNUSED dxpl_id, H5O_t UNUSED *open_oh, /* decode */ for(i = 0; i < 14; i++) - if(!HDisdigit(p[i])) - HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "badly formatted modification time message") + if(!HDisdigit(p[i])) + HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "badly formatted modification time message") /* * Convert YYYYMMDDhhmmss UTC to a time_t. This is a little problematic @@ -219,36 +219,14 @@ H5O_mtime_decode(H5F_t UNUSED *f, hid_t UNUSED dxpl_id, H5O_t UNUSED *open_oh, tm.tm_sec = (p[12]-'0')*10 + (p[13]-'0'); tm.tm_isdst = -1; /*figure it out*/ if((time_t)-1 == (the_time = HDmktime(&tm))) - HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "badly formatted modification time message") + HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "badly formatted modification time message") #if defined(H5_HAVE_TM_GMTOFF) - /* FreeBSD, OSF 4.0 */ + /* BSD-like systems */ the_time += tm.tm_gmtoff; -#elif defined(H5_HAVE___TM_GMTOFF) - /* Linux libc-4 */ - the_time += tm.__tm_gmtoff; #elif defined(H5_HAVE_TIMEZONE) - /* Linux libc-5 */ - the_time -= timezone - (tm.tm_isdst?3600:0); -#elif defined(H5_HAVE_BSDGETTIMEOFDAY) && defined(H5_HAVE_STRUCT_TIMEZONE) - /* Irix5.3 */ - { - struct timezone tz; - - if(HDBSDgettimeofday(NULL, &tz) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to obtain local timezone information") - the_time -= tz.tz_minuteswest * 60 - (tm.tm_isdst ? 3600 : 0); - } -#elif defined(H5_HAVE_GETTIMEOFDAY) && defined(H5_HAVE_STRUCT_TIMEZONE) && defined(H5_GETTIMEOFDAY_GIVES_TZ) - { - struct timezone tz; - struct timeval tv; /* Used as a placebo; some systems don't like NULL */ - - if(HDgettimeofday(&tv, &tz) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to obtain local timezone information") - - the_time -= tz.tz_minuteswest * 60 - (tm.tm_isdst ? 3600 : 0); - } + /* GNU/Linux systems */ + the_time -= timezone - (tm.tm_isdst ? 3600 : 0); #else /* * The catch-all. If we can't convert a character string universal @@ -257,14 +235,12 @@ H5O_mtime_decode(H5F_t UNUSED *f, hid_t UNUSED dxpl_id, H5O_t UNUSED *open_oh, * only way a user can get the modification time is from our internal * query routines, which can gracefully recover. */ - - /* Irix64 */ HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to obtain local timezone information") #endif /* The return value */ if(NULL == (mesg = H5FL_MALLOC(time_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") *mesg = the_time; /* Set return value */ diff --git a/src/H5Osdspace.c b/src/H5Osdspace.c index 9ca8436..875cd56 100644 --- a/src/H5Osdspace.c +++ b/src/H5Osdspace.c @@ -308,7 +308,7 @@ H5O_sdspace_copy(const void *_mesg, void *_dest) /* check args */ HDassert(mesg); - if(!dest && NULL == (dest = H5FL_MALLOC(H5S_extent_t))) + if(!dest && NULL == (dest = H5FL_CALLOC(H5S_extent_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Copy extent information */ @@ -463,7 +463,7 @@ H5O_sdspace_pre_copy_file(H5F_t UNUSED *file_src, const void *mesg_src, */ if(udata) { /* Allocate copy of dataspace extent */ - if(NULL == (udata->src_space_extent = H5FL_MALLOC(H5S_extent_t))) + if(NULL == (udata->src_space_extent = H5FL_CALLOC(H5S_extent_t))) HGOTO_ERROR(H5E_DATASPACE, H5E_NOSPACE, FAIL, "dataspace extent allocation failed") /* Create a copy of the dataspace extent */ @@ -1596,6 +1596,7 @@ H5Pget_class_name(hid_t pclass_id) char *ret_value; /* return value */ FUNC_ENTER_API(NULL) + H5TRACE1("*s", "i", pclass_id); /* Check arguments. */ if(NULL == (pclass = (H5P_genclass_t *)H5I_object_verify(pclass_id, H5I_GENPROP_CLS))) @@ -23,12 +23,12 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5PLprivate.h" /* Plugin */ -#include "H5VLprivate.h" /* VOL */ -#include "H5Zprivate.h" /* Filter pipeline */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5PLprivate.h" /* Plugin */ +#include "H5VLprivate.h" /* VOL */ +#include "H5Zprivate.h" /* Filter pipeline */ /****************/ @@ -41,7 +41,19 @@ /* Macros for supporting * both Windows and Unix */ /****************************/ -/* Windows support */ +/* Windows support + * + * SPECIAL WINDOWS NOTE + * + * Some of the Win32 API functions expand to fooA or fooW depending on + * whether UNICODE or _UNICODE are defined. You MUST explicitly use + * the A version of the functions to force char * behavior until we + * work out a scheme for proper Windows Unicode support. + * + * If you do not do this, people will be unable to incorporate our + * source code into their own CMake builds if they define UNICODE. + */ + #ifdef H5_HAVE_WIN32_API #define H5PL_PATH_SEPARATOR ";" @@ -50,7 +62,7 @@ #define H5PL_HANDLE HINSTANCE /* Get a handle to a plugin library. Windows: TEXT macro handles Unicode strings */ -#define H5PL_OPEN_DLIB(S) LoadLibraryEx(TEXT(S), NULL, LOAD_WITH_ALTERED_SEARCH_PATH) +#define H5PL_OPEN_DLIB(S) LoadLibraryExA(S, NULL, LOAD_WITH_ALTERED_SEARCH_PATH) /* Get the address of a symbol in dynamic library */ #define H5PL_GET_LIB_FUNC(H,N) GetProcAddress(H,N) @@ -86,6 +98,7 @@ typedef const void *(__cdecl *H5PL_get_plugin_info_t)(void); typedef const void *(*H5PL_get_plugin_info_t)(void); #endif /* H5_HAVE_WIN32_API */ +/* Whether to preload pathnames for plugin libraries */ #define H5PL_DEFAULT_PATH H5_DEFAULT_PLUGINDIR /* Special symbol to indicate no plugin loading */ @@ -97,10 +110,10 @@ typedef const void *(*H5PL_get_plugin_info_t)(void); /* Type for the list of info for opened plugin libraries */ typedef struct H5PL_table_t { - H5PL_type_t pl_type; /* plugin type */ - int pl_id; /* ID for the plugin */ - const char *pl_name; /* name of the plugin */ - H5PL_HANDLE handle; /* plugin handle */ + H5PL_type_t pl_type; /* plugin type */ + int pl_id; /* ID for the plugin */ + const char *pl_name; /* name of the plugin */ + H5PL_HANDLE handle; /* plugin handle */ } H5PL_table_t; @@ -144,8 +157,8 @@ static char *H5PL_path_table_g[H5PL_MAX_PATH_NUM]; static size_t H5PL_num_paths_g = 0; static hbool_t H5PL_path_found_g = FALSE; -/* Whether to preload pathnames for plugin libraries */ -static hbool_t H5PL_no_plugin_g = FALSE; +/* Enable all plugin libraries */ +static unsigned int H5PL_plugin_g = H5PL_ALL_PLUGIN; /*-------------------------------------------------------------------------- @@ -172,7 +185,7 @@ H5PL__init_interface(void) if(NULL != (preload_path = HDgetenv("HDF5_PLUGIN_PRELOAD"))) { /* Special symbal "::" means no plugin during data reading. */ if(!HDstrcmp(preload_path, H5PL_NO_PLUGIN)) - H5PL_no_plugin_g = TRUE; + H5PL_plugin_g = 0; } /* end if */ FUNC_LEAVE_NOAPI(SUCCEED) @@ -180,46 +193,83 @@ H5PL__init_interface(void) /*------------------------------------------------------------------------- - * Function: H5PL_no_plugin + * Function: H5PLset_loading_state * - * Purpose: Quick way for filter module to query whether to load plugin + * Purpose: Control the loading of dynamic plugin types. * - * Return: TRUE: No plugin loading during data reading + * This function will not allow plugin types if the pathname from the HDF5_PLUGIN_PRELOAD + * environment variable is set to the special "::" string. * - * FALSE: Load plugin during data reading + * plugin bit = 0, will prevent the use of that dynamic plugin type. + * plugin bit = 1, will allow the use of that dynamic plugin type. * - * Programmer: Raymond Lu - * 20 February 2013 + * H5PL_TYPE_FILTER changes just dynamic filters + * A H5PL_ALL_PLUGIN will enable all dynamic plugin types + * A zero value will disable all dynamic plugin types + * + * Return: Non-negative or success * *------------------------------------------------------------------------- */ -htri_t -H5PL_no_plugin(void) +herr_t +H5PLset_loading_state(unsigned int plugin_type) { - htri_t ret_value; + char *preload_path; + herr_t ret_value = SUCCEED; /* Return value */ + FUNC_ENTER_API(FAIL) + H5TRACE1("e", "Iu", plugin_type); + /* change the bit value of the requested plugin type(s) */ + H5PL_plugin_g = plugin_type; + /* check if special ENV variable is set and disable all plugin types */ + if(NULL != (preload_path = HDgetenv("HDF5_PLUGIN_PRELOAD"))) { + /* Special symbol "::" means no plugin during data reading. */ + if(!HDstrcmp(preload_path, H5PL_NO_PLUGIN)) + H5PL_plugin_g = 0; + } +done: + FUNC_LEAVE_API(ret_value) +} /* end H5PLset_loading_state() */ - FUNC_ENTER_NOAPI(FAIL) - ret_value = (htri_t)H5PL_no_plugin_g; +/*------------------------------------------------------------------------- + * Function: H5PLget_loading_state + * + * Purpose: Query state of the loading of dynamic plugin types. + * + * This function will return the state of the global flag. + * + * Return: Zero if all plugin types are disabled, negative if all + * plugin types are enabled, positive if one or more of the plugin types are enabled. + * + *------------------------------------------------------------------------- + */ +herr_t +H5PLget_loading_state(unsigned int* plugin_type) +{ + herr_t ret_value = SUCCEED; /* Return value */ + FUNC_ENTER_API(FAIL) + + if(plugin_type) + *plugin_type = H5PL_plugin_g; + done: + FUNC_LEAVE_API(ret_value) +} /* end H5PLget_loading_state() */ -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5PL_no_plugin() */ /*------------------------------------------------------------------------- - * Function: H5PL_term_interface + * Function: H5PL_term_interface * - * Purpose: Terminate the H5PL interface: release all memory, reset all - * global variables to initial values. This only happens if all - * types have been destroyed from other interfaces. + * Purpose: Terminate the H5PL interface: release all memory, reset all + * global variables to initial values. This only happens if all + * types have been destroyed from other interfaces. * - * Return: Success: Positive if any action was taken that might - * affect some other interface; zero otherwise. + * Return: Success: Positive if any action was taken that might + * affect some other interface; zero otherwise. * - * Failure: Negative. + * Failure: Negative. * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 20 February 2013 * *------------------------------------------------------------------------- @@ -234,7 +284,7 @@ H5PL_term_interface(void) if(H5_interface_initialize_g) { size_t u; /* Local index variable */ - /* Close opened dynamic libraries */ + /* Close opened dynamic libraries */ for(u = 0; u < H5PL_filter_table_used_g; u++) H5PL__close((H5PL_filter_table_g[u]).handle); @@ -259,7 +309,7 @@ H5PL_term_interface(void) H5PL_num_paths_g = 0; H5PL_path_found_g = FALSE; - H5_interface_initialize_g = 0; + H5_interface_initialize_g = 0; i = 1; } /* end if */ @@ -268,15 +318,15 @@ H5PL_term_interface(void) /*------------------------------------------------------------------------- - * Function: H5PL_load + * Function: H5PL_load * * Purpose: Given the plugin type and identifier and/or name, this function * searches and/or loads a dynamic plugin library first among the * already opened libraries then in the designated location paths. * - * Return: Non-NULL on success/NULL on failure + * Return: Non-NULL on success/NULL on failure * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 13 February 2013 * *------------------------------------------------------------------------- @@ -290,9 +340,18 @@ H5PL_load(H5PL_type_t type, int id, const char *name) FUNC_ENTER_NOAPI(NULL) - /* Check for "no plugins" indicated" */ - if(H5PL_no_plugin_g) - HGOTO_ERROR(H5E_PLUGIN, H5E_CANTLOAD, NULL, "required dynamically loaded plugin filter '%d' is not available", id) + switch (type) { + case H5PL_TYPE_FILTER: + if((H5PL_plugin_g & H5PL_FILTER_PLUGIN) == 0) + HGOTO_ERROR(H5E_PLUGIN, H5E_CANTLOAD, NULL, "required dynamically loaded plugin filter '%d' is not available", id) + break; + case H5PL_TYPE_VOL: + if((H5PL_plugin_g & H5PL_VOL_PLUGIN) == 0) + HGOTO_ERROR(H5E_PLUGIN, H5E_CANTLOAD, NULL, "required dynamically loaded plugin filter '%d' is not available", id) + break; + default: + HGOTO_ERROR(H5E_PLUGIN, H5E_CANTLOAD, NULL, "required dynamically loaded plugin '%d' is not valid", id) + } /* Initialize the location paths for dynamic libraries, if they aren't * already set up. @@ -331,13 +390,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5PL__init_path_table + * Function: H5PL__init_path_table * - * Purpose: Initialize the path table. + * Purpose: Initialize the path table. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * 18 March 2013 * *------------------------------------------------------------------------- @@ -386,18 +445,18 @@ done: /*------------------------------------------------------------------------- - * Function: H5PL__find + * Function: H5PL__find * * Purpose: Given a path, this function opens the directory and envokes * another function to go through all files to find the right * plugin library. Two function definitions are for Unix and * Windows. * - * Return: TRUE on success, + * Return: TRUE on success, * FALSE on not found, * negative on failure * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 13 February 2013 * *------------------------------------------------------------------------- @@ -474,17 +533,17 @@ done: static htri_t H5PL__find(H5PL_type_t plugin_type, int type_id, const char *plugin_name, char *dir, const void **info) { - WIN32_FIND_DATA fdFile; - HANDLE hFind; - char *pathname = NULL; - char service[2048]; - htri_t ret_value = FALSE; + WIN32_FIND_DATAA fdFile; + HANDLE hFind; + char *pathname = NULL; + char service[2048]; + htri_t ret_value = FALSE; FUNC_ENTER_STATIC /* Specify a file mask. *.* = We want everything! */ sprintf(service, "%s\\*.dll", dir); - if((hFind = FindFirstFile(service, &fdFile)) == INVALID_HANDLE_VALUE) + if((hFind = FindFirstFileA(service, &fdFile)) == INVALID_HANDLE_VALUE) HGOTO_ERROR(H5E_PLUGIN, H5E_OPENERROR, FAIL, "can't open directory") do { @@ -497,7 +556,7 @@ H5PL__find(H5PL_type_t plugin_type, int type_id, const char *plugin_name, char * /* Allocate & initialize the path name */ pathname_len = HDstrlen(dir) + HDstrlen(fdFile.cFileName) + 2; - if(NULL == (pathname = (char *)H5MM_malloc(pathname_len))) + if(NULL == (pathname = (char *)H5MM_malloc(pathname_len))) HGOTO_ERROR(H5E_PLUGIN, H5E_CANTALLOC, FAIL, "can't allocate memory for path") HDsnprintf(pathname, pathname_len, "%s\\%s", dir, fdFile.cFileName); @@ -512,10 +571,10 @@ H5PL__find(H5PL_type_t plugin_type, int type_id, const char *plugin_name, char * HGOTO_DONE(TRUE) } /* end if */ else - HDassert(pathname); + HDassert(pathname); pathname = (char *)H5MM_xfree(pathname); } /* end if */ - } while(FindNextFile(hFind, &fdFile)); /* Find the next file. */ + } while(FindNextFileA(hFind, &fdFile)); /* Find the next file. */ done: if(hFind) @@ -529,17 +588,17 @@ done: /*------------------------------------------------------------------------- - * Function: H5PL__open + * Function: H5PL__open * * Purpose: Iterates through all files to find the right plugin library. * It loads the dynamic plugin library and keeps it on the list - * of loaded libraries. + * of loaded libraries. * - * Return: TRUE on success, + * Return: TRUE on success, * FALSE on not found, * negative on failure * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 13 February 2013 * *------------------------------------------------------------------------- @@ -680,16 +739,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5PL__search_table + * Function: H5PL__search_table * * Purpose: Search in the list of already opened dynamic libraries * to see if the one we are looking for is already opened. * - * Return: TRUE on success, + * Return: TRUE on success, * FALSE on not found, * Negative on failure * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 13 February 2013 * *------------------------------------------------------------------------- @@ -711,12 +770,12 @@ H5PL__search_table(H5PL_type_t plugin_type, int type_id, const char *plugin_name const H5Z_class2_t *plugin_info; if(NULL == (get_plugin_info = (H5PL_get_plugin_info_t)H5PL_GET_LIB_FUNC((H5PL_filter_table_g[i]).handle, "H5PLget_plugin_info"))) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "can't get function for H5PLget_plugin_info") + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "can't get function for H5PLget_plugin_info") - if(NULL == (plugin_info = (const H5Z_class2_t *)(*get_plugin_info)())) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "can't get plugin info") + if(NULL == (plugin_info = (const H5Z_class2_t *)(*get_plugin_info)())) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "can't get plugin info") - *info = plugin_info; + *info = plugin_info; HGOTO_DONE(TRUE) } /* end if */ } /* end for */ @@ -748,13 +807,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5PL__close + * Function: H5PL__close * * Purpose: Closes the handle for dynamic library * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 13 February 2013 * *------------------------------------------------------------------------- @@ -768,4 +827,3 @@ H5PL__close(H5PL_HANDLE handle) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5PL__close() */ - diff --git a/src/H5PLextern.h b/src/H5PLextern.h index d368cc0..3264435 100644 --- a/src/H5PLextern.h +++ b/src/H5PLextern.h @@ -22,19 +22,6 @@ /* Include HDF5 header */ #include "hdf5.h" -/*******************/ -/* Public Typedefs */ -/*******************/ - -/* Plugin type */ -typedef enum H5PL_type_t { - H5PL_TYPE_ERROR = -1, /*error */ - H5PL_TYPE_FILTER = 0, /*filter */ - H5PL_TYPE_VOL = 1, /*vol plugin */ - H5PL_TYPE_NONE = 2 /*this must be last! */ -} H5PL_type_t; - - /* plugins always export */ #if defined (_MSC_VER) /* MSVC Compiler Case */ #define H5PLUGIN_DLL __declspec(dllexport) diff --git a/src/H5PLprivate.h b/src/H5PLprivate.h index 76eb428..ca9b2ba 100644 --- a/src/H5PLprivate.h +++ b/src/H5PLprivate.h @@ -19,19 +19,8 @@ #ifndef _H5PLprivate_H #define _H5PLprivate_H -/* Keep the following in sync with the package's "external" header */ - -/*******************/ -/* Public Typedefs */ -/*******************/ - -/* Plugin type */ -typedef enum H5PL_type_t { - H5PL_TYPE_ERROR = -1, /*error */ - H5PL_TYPE_FILTER = 0, /*filter */ - H5PL_TYPE_VOL = 1, /*vol plugin */ - H5PL_TYPE_NONE = 2 /*this must be last! */ -} H5PL_type_t; +/* Include package's public header */ +#include "H5PLpublic.h" /* Private headers needed by this file */ #include "H5private.h" /* Generic Functions */ @@ -58,7 +47,6 @@ typedef enum H5PL_type_t { /* Internal API routines */ H5_DLL const void *H5PL_load(H5PL_type_t plugin_type, int type_id, const char *plugin_name); -H5_DLL htri_t H5PL_no_plugin(void); #endif /* _H5PLprivate_H */ diff --git a/src/H5PLpublic.h b/src/H5PLpublic.h new file mode 100644 index 0000000..f7cd0e1 --- /dev/null +++ b/src/H5PLpublic.h @@ -0,0 +1,55 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic document set and is * + * linked from the top-level documents page. It can also be found at * + * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have access * + * to either file, you may request a copy from help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* Programmer: Raymond Lu <songyulu@hdfgroup.org> + * 13 February 2013 + */ + +#ifndef _H5PLpublic_H +#define _H5PLpublic_H + +/* Public headers needed by this file */ +#include "H5public.h" /* Generic Functions */ + +/*******************/ +/* Public Typedefs */ +/*******************/ + +/* Plugin type used by the plugin library */ +typedef enum H5PL_type_t { + H5PL_TYPE_ERROR = -1, /*error */ + H5PL_TYPE_FILTER = 0, /*filter */ + H5PL_TYPE_VOL = 1, /*vol plugin */ + H5PL_TYPE_NONE = 2 /*this must be last! */ +} H5PL_type_t; + +/* Common dynamic plugin type flags used by the set/get_loading_state functions */ +#define H5PL_FILTER_PLUGIN 0x0001 +#define H5PL_VOL_PLUGIN 0x0002 +#define H5PL_ALL_PLUGIN 0xFFFF + +#ifdef __cplusplus +extern "C" { +#endif + +/* plugin state */ +H5_DLL herr_t H5PLset_loading_state(unsigned int plugin_type); +H5_DLL herr_t H5PLget_loading_state(unsigned int* plugin_type/*out*/); + +#ifdef __cplusplus +} +#endif + +#endif /* _H5PLpublic_H */ + diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c index 6e31af9..326db3a 100644 --- a/src/H5Pdcpl.c +++ b/src/H5Pdcpl.c @@ -53,7 +53,7 @@ /* Define default layout information */ #define H5D_DEF_STORAGE_COMPACT_INIT {(hbool_t)FALSE, (size_t)0, NULL} #define H5D_DEF_STORAGE_CONTIG_INIT {HADDR_UNDEF, (hsize_t)0} -#define H5D_DEF_STORAGE_CHUNK_INIT {H5D_CHUNK_BTREE, HADDR_UNDEF, NULL, {{HADDR_UNDEF, NULL}}} +#define H5D_DEF_STORAGE_CHUNK_INIT {H5D_CHUNK_IDX_BTREE, HADDR_UNDEF, NULL, {{HADDR_UNDEF, NULL}}} #define H5D_DEF_LAYOUT_CHUNK_INIT {(unsigned)0, {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0}, (uint32_t)0, (hsize_t)0, {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0}, {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0}} #ifdef H5_HAVE_C99_DESIGNATED_INITIALIZER #define H5D_DEF_STORAGE_COMPACT {H5D_COMPACT, { .compact = H5D_DEF_STORAGE_COMPACT_INIT }} diff --git a/src/H5Pfapl.c b/src/H5Pfapl.c index c8ca821..ca8f398 100644 --- a/src/H5Pfapl.c +++ b/src/H5Pfapl.c @@ -995,6 +995,7 @@ H5Pget_driver_info(hid_t plist_id) void *ret_value; /* Return value */ FUNC_ENTER_API(NULL) + H5TRACE1("*x", "i", plist_id); if(NULL == (plist = (H5P_genplist_t *)H5I_object_verify(plist_id, H5I_GENPROP_LST))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a property list") diff --git a/src/H5Pfcpl.c b/src/H5Pfcpl.c index aca589c..5fc93fd 100644 --- a/src/H5Pfcpl.c +++ b/src/H5Pfcpl.c @@ -517,6 +517,9 @@ H5Pset_sym_k(hid_t plist_id, unsigned ik, unsigned lk) /* Set values */ if (ik > 0) { + if((ik * 2) >= HDF5_BTREE_IK_MAX_ENTRIES) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "istore IK value exceeds maximum B-tree entries"); + if(H5P_get(plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get rank for btree interanl nodes"); btree_k[H5B_SNODE_ID] = ik; @@ -614,6 +617,9 @@ H5Pset_istore_k(hid_t plist_id, unsigned ik) if (ik == 0) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "istore IK value must be positive"); + if((ik * 2) >= HDF5_BTREE_IK_MAX_ENTRIES) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "istore IK value exceeds maximum B-tree entries"); + /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id,H5P_FILE_CREATE))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); @@ -286,7 +286,7 @@ H5R_create(void *_ref, H5G_loc_t *loc, const char *name, H5R_type_t ref_type, H5 H5F_addr_encode(loc->oloc->file, &p, obj_loc.oloc->addr); /* Serialize the selection into heap buffer */ - if(H5S_SELECT_SERIALIZE(space, p) < 0) + if(H5S_SELECT_SERIALIZE(space, &p) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "Unable to serialize selection") /* Save the serialized buffer for later */ @@ -411,6 +411,10 @@ done: 13 July 2011 I added the OAPL_ID parameter for the object being referenced. It only supports dataset access property list currently. + + M. Scot Breitenfeld + 3 March 2015 + Added a check for undefined reference pointer. --------------------------------------------------------------------------*/ hid_t H5R_dereference(H5F_t *file, hid_t oapl_id, hid_t dxpl_id, H5R_type_t ref_type, const void *_ref, hbool_t app_ref) @@ -435,8 +439,10 @@ H5R_dereference(H5F_t *file, hid_t oapl_id, hid_t dxpl_id, H5R_type_t ref_type, switch(ref_type) { case H5R_OBJECT: oloc.addr = *(const hobj_ref_t *)_ref; /* Only object references currently supported */ - break; - + if(!H5F_addr_defined(oloc.addr) || oloc.addr == 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Undefined reference pointer") + break; + case H5R_DATASET_REGION: { H5HG_t hobjid; /* Heap object ID */ @@ -448,6 +454,9 @@ H5R_dereference(H5F_t *file, hid_t oapl_id, hid_t dxpl_id, H5R_type_t ref_type, H5F_addr_decode(oloc.file, &p, &(hobjid.addr)); UINT32DECODE(p, hobjid.idx); + if(!H5F_addr_defined(hobjid.addr) || hobjid.addr == 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Undefined reference pointer") + /* Get the dataset region from the heap (allocate inside routine) */ if(NULL == (buf = (uint8_t *)H5HG_read(oloc.file, dxpl_id, &hobjid, NULL, NULL))) HGOTO_ERROR(H5E_REFERENCE, H5E_READERROR, FAIL, "Unable to read dataset region information") @@ -670,7 +679,7 @@ H5R_get_region(H5F_t *file, hid_t dxpl_id, const void *_ref) HGOTO_ERROR(H5E_DATASPACE, H5E_NOTFOUND, NULL, "not found") /* Unserialize the selection */ - if(H5S_select_deserialize(ret_value, p) < 0) + if(H5S_SELECT_DESERIALIZE(&ret_value, &p) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDECODE, NULL, "can't deserialize selection") done: @@ -139,7 +139,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ H5RS_str_t * -H5RS_wrap(const char *s) +H5RS_wrap(char *s) { H5RS_str_t *ret_value; /* Return value */ @@ -150,7 +150,7 @@ H5RS_wrap(const char *s) HGOTO_ERROR(H5E_RS, H5E_NOSPACE, NULL, "memory allocation failed") /* Set the internal fields */ - ret_value->s = (char *)s; /* (Cast away const OK - QAK) */ + ret_value->s = s; ret_value->wrapped = 1; ret_value->n = 1; diff --git a/src/H5RSprivate.h b/src/H5RSprivate.h index c46f53c..757e0e4 100644 --- a/src/H5RSprivate.h +++ b/src/H5RSprivate.h @@ -46,7 +46,7 @@ typedef struct H5RS_str_t H5RS_str_t; /* Private routines */ /********************/ H5_DLL H5RS_str_t *H5RS_create(const char *s); -H5_DLL H5RS_str_t *H5RS_wrap(const char *s); +H5_DLL H5RS_str_t *H5RS_wrap(char *s); H5_DLL H5RS_str_t *H5RS_own(char *s); H5_DLL herr_t H5RS_decr(H5RS_str_t *rs); H5_DLL herr_t H5RS_incr(H5RS_str_t *rs); @@ -482,6 +482,12 @@ H5Sextent_copy(hid_t dst_id,hid_t src_id) if(H5S_extent_copy(&(dst->extent), &(src->extent), TRUE) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "can't copy extent") + /* If the selection is 'all', update the number of elements selected in the + * destination space */ + if(H5S_SEL_ALL == H5S_GET_SELECT_TYPE(dst)) + if(H5S_select_all(dst, FALSE) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection") + done: FUNC_LEAVE_API(ret_value) } /* end H5Sextent_copy() */ @@ -509,6 +515,10 @@ H5S_extent_copy(H5S_extent_t *dst, const H5S_extent_t *src, hbool_t copy_max) FUNC_ENTER_NOAPI(FAIL) + /* Release destination extent before we copy over it */ + if(H5S_extent_release(dst) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release dataspace extent") + /* Copy the regular fields */ dst->type = src->type; dst->version = src->version; @@ -583,7 +593,7 @@ H5S_copy(const H5S_t *src, hbool_t share_selection, hbool_t copy_max) FUNC_ENTER_NOAPI(NULL) - if(NULL == (dst = H5FL_MALLOC(H5S_t))) + if(NULL == (dst = H5FL_CALLOC(H5S_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Copy the source dataspace's extent */ @@ -1536,7 +1546,7 @@ H5S_encode(H5S_t *obj, unsigned char *buf, size_t *nalloc) buf += extent_size; /* Encode the selection part of dataspace. */ - if(H5S_SELECT_SERIALIZE(obj, buf) < 0) + if(H5S_SELECT_SERIALIZE(obj, &buf) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTENCODE, FAIL, "can't encode select space") } /* end else */ @@ -1655,7 +1665,7 @@ H5S_decode(const unsigned char *buf) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, NULL, "unable to set all selection") /* Decode the select part of dataspace. I believe this part always exists. */ - if(H5S_SELECT_DESERIALIZE(ds, buf) < 0) + if(H5S_SELECT_DESERIALIZE(&ds, &buf) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDECODE, NULL, "can't decode space selection") /* Set return value */ diff --git a/src/H5Sall.c b/src/H5Sall.c index 24caad2..1105915 100644 --- a/src/H5Sall.c +++ b/src/H5Sall.c @@ -39,8 +39,8 @@ static herr_t H5S_all_get_seq_list(const H5S_t *space, unsigned flags, static herr_t H5S_all_release(H5S_t *space); static htri_t H5S_all_is_valid(const H5S_t *space); static hssize_t H5S_all_serial_size(const H5S_t *space); -static herr_t H5S_all_serialize(const H5S_t *space, uint8_t *buf); -static herr_t H5S_all_deserialize(H5S_t *space, const uint8_t *buf); +static herr_t H5S_all_serialize(const H5S_t *space, uint8_t **p); +static herr_t H5S_all_deserialize(H5S_t *space, const uint8_t **p); static herr_t H5S_all_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); static herr_t H5S_all_offset(const H5S_t *space, hsize_t *off); static htri_t H5S_all_is_contiguous(const H5S_t *space); @@ -496,9 +496,11 @@ H5S_all_serial_size (const H5S_t UNUSED *space) PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_all_serialize(space, buf) - H5S_t *space; IN: Dataspace pointer of selection to serialize - uint8 *buf; OUT: Buffer to put serialized selection into + herr_t H5S_all_serialize(space, p) + const H5S_t *space; IN: Dataspace with selection to serialize + uint8_t **p; OUT: Pointer to buffer to put serialized + selection. Will be advanced to end of + serialized selection. RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -510,17 +512,19 @@ H5S_all_serial_size (const H5S_t UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_all_serialize (const H5S_t *space, uint8_t *buf) +H5S_all_serialize (const H5S_t *space, uint8_t **p) { FUNC_ENTER_NOAPI_NOINIT_NOERR HDassert(space); + HDassert(p); + HDassert(*p); /* Store the preamble information */ - UINT32ENCODE(buf, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(buf, (uint32_t)1); /* Store the version number */ - UINT32ENCODE(buf, (uint32_t)0); /* Store the un-used padding */ - UINT32ENCODE(buf, (uint32_t)0); /* Store the additional information length */ + UINT32ENCODE(*p, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(*p, (uint32_t)1); /* Store the version number */ + UINT32ENCODE(*p, (uint32_t)0); /* Store the un-used padding */ + UINT32ENCODE(*p, (uint32_t)0); /* Store the additional information length */ FUNC_LEAVE_NOAPI(SUCCEED) } /* H5S_all_serialize() */ @@ -532,9 +536,12 @@ H5S_all_serialize (const H5S_t *space, uint8_t *buf) PURPOSE Deserialize the current selection from a user-provided buffer. USAGE - herr_t H5S_all_deserialize(space, buf) - H5S_t *space; IN/OUT: Dataspace pointer to place selection into - uint8 *buf; IN: Buffer to retrieve serialized selection from + herr_t H5S_all_deserialize(space, p) + H5S_t *space; IN/OUT: Dataspace pointer to place + selection into + uint8 **p; OUT: Pointer to buffer holding serialized + selection. Will be advanced to end of + serialized selection. RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -546,16 +553,18 @@ H5S_all_serialize (const H5S_t *space, uint8_t *buf) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_all_deserialize(H5S_t *space, const uint8_t UNUSED *buf) +H5S_all_deserialize(H5S_t *space, const uint8_t UNUSED **p) { - herr_t ret_value; /* return value */ + herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_NOAPI(FAIL) HDassert(space); + HDassert(p); + HDassert(*p); /* Change to "all" selection */ - if((ret_value = H5S_select_all(space, TRUE)) < 0) + if(H5S_select_all(space, TRUE) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection") done: diff --git a/src/H5Sdbg.c b/src/H5Sdbg.c index df033da..0cbe4f2 100644 --- a/src/H5Sdbg.c +++ b/src/H5Sdbg.c @@ -113,6 +113,7 @@ H5S_debug(H5F_t *f, hid_t dxpl_id, const void *_mesg, FILE *stream, int indent, indent + 3, MAX(0, fwidth - 3)); break; + case H5S_NO_CLASS: default: fprintf(stream, "%*s%-*s **UNKNOWN-%ld**\n", indent, "", fwidth, "Space class:", (long)(H5S_GET_EXTENT_TYPE(mesg))); diff --git a/src/H5Shyper.c b/src/H5Shyper.c index c97c9b6..9b1562f 100644 --- a/src/H5Shyper.c +++ b/src/H5Shyper.c @@ -54,8 +54,8 @@ static herr_t H5S_hyper_get_seq_list(const H5S_t *space, unsigned flags, static herr_t H5S_hyper_release(H5S_t *space); static htri_t H5S_hyper_is_valid(const H5S_t *space); static hssize_t H5S_hyper_serial_size(const H5S_t *space); -static herr_t H5S_hyper_serialize(const H5S_t *space, uint8_t *buf); -static herr_t H5S_hyper_deserialize(H5S_t *space, const uint8_t *buf); +static herr_t H5S_hyper_serialize(const H5S_t *space, uint8_t **p); +static herr_t H5S_hyper_deserialize(H5S_t *space, const uint8_t **p); static herr_t H5S_hyper_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); static herr_t H5S_hyper_offset(const H5S_t *space, hsize_t *offset); static htri_t H5S_hyper_is_contiguous(const H5S_t *space); @@ -1994,7 +1994,7 @@ H5S_hyper_serial_size(const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_hyper_serialize_helper (const H5S_hyper_span_info_t *spans, hsize_t *start, hsize_t *end, hsize_t rank, uint8_t **buf) +H5S_hyper_serialize_helper (const H5S_hyper_span_info_t *spans, hsize_t *start, hsize_t *end, hsize_t rank, uint8_t **p) { H5S_hyper_span_t *curr; /* Pointer to current hyperslab span */ hsize_t u; /* Index variable */ @@ -2007,7 +2007,7 @@ H5S_hyper_serialize_helper (const H5S_hyper_span_info_t *spans, hsize_t *start, HDassert(start); HDassert(end); HDassert(rank < H5O_LAYOUT_NDIMS); - HDassert(buf && *buf); + HDassert(p && *p); /* Walk through the list of spans, recursing or outputing them */ curr=spans->head; @@ -2019,7 +2019,7 @@ H5S_hyper_serialize_helper (const H5S_hyper_span_info_t *spans, hsize_t *start, end[rank]=curr->high; /* Recurse down to the next dimension */ - if(H5S_hyper_serialize_helper(curr->down,start,end,rank+1,buf)<0) + if(H5S_hyper_serialize_helper(curr->down,start,end,rank+1,p)<0) HGOTO_ERROR(H5E_INTERNAL, H5E_CANTFREE, FAIL, "failed to release hyperslab spans") } /* end if */ else { @@ -2027,17 +2027,17 @@ H5S_hyper_serialize_helper (const H5S_hyper_span_info_t *spans, hsize_t *start, /* Encode previous starting points */ for(u=0; u<rank; u++) - UINT32ENCODE(*buf, (uint32_t)start[u]); + UINT32ENCODE(*p, (uint32_t)start[u]); /* Encode starting point for this span */ - UINT32ENCODE(*buf, (uint32_t)curr->low); + UINT32ENCODE(*p, (uint32_t)curr->low); /* Encode previous ending points */ for(u=0; u<rank; u++) - UINT32ENCODE(*buf, (uint32_t)end[u]); + UINT32ENCODE(*p, (uint32_t)end[u]); /* Encode starting point for this span */ - UINT32ENCODE(*buf, (uint32_t)curr->high); + UINT32ENCODE(*p, (uint32_t)curr->high); } /* end else */ /* Advance to next node */ @@ -2055,9 +2055,11 @@ done: PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_hyper_serialize(space, buf) - H5S_t *space; IN: Dataspace pointer of selection to serialize - uint8 *buf; OUT: Buffer to put serialized selection into + herr_t H5S_hyper_serialize(space, p) + const H5S_t *space; IN: Dataspace with selection to serialize + uint8_t **p; OUT: Pointer to buffer to put serialized + selection. Will be advanced to end of + serialized selection. RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -2069,7 +2071,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_hyper_serialize (const H5S_t *space, uint8_t *buf) +H5S_hyper_serialize (const H5S_t *space, uint8_t **p) { const H5S_hyper_dim_t *diminfo; /* Alias for dataspace's diminfo information */ hsize_t tmp_count[H5O_LAYOUT_NDIMS]; /* Temporary hyperslab counts */ @@ -2089,14 +2091,14 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t *buf) HDassert(space); /* Store the preamble information */ - UINT32ENCODE(buf, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(buf, (uint32_t)1); /* Store the version number */ - UINT32ENCODE(buf, (uint32_t)0); /* Store the un-used padding */ - lenp = buf; /* keep the pointer to the length location for later */ - buf += 4; /* skip over space for length */ + UINT32ENCODE(*p, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(*p, (uint32_t)1); /* Store the version number */ + UINT32ENCODE(*p, (uint32_t)0); /* Store the un-used padding */ + lenp = *p; /* keep the pointer to the length location for later */ + *p += 4; /* skip over space for length */ /* Encode number of dimensions */ - UINT32ENCODE(buf, (uint32_t)space->extent.rank); + UINT32ENCODE(*p, (uint32_t)space->extent.rank); len += 4; /* Check for a "regular" hyperslab selection */ @@ -2114,7 +2116,7 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t *buf) /* Encode number of hyperslabs */ H5_CHECK_OVERFLOW(block_count, hsize_t, uint32_t); - UINT32ENCODE(buf, (uint32_t)block_count); + UINT32ENCODE(*p, (uint32_t)block_count); len+=4; /* Now serialize the information for the regular hyperslab */ @@ -2137,11 +2139,11 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t *buf) /* Encode hyperslab starting location */ for(u = 0; u < ndims; u++) - UINT32ENCODE(buf, (uint32_t)offset[u]); + UINT32ENCODE(*p, (uint32_t)offset[u]); /* Encode hyperslab ending location */ for(u = 0; u < ndims; u++) - UINT32ENCODE(buf, (uint32_t)(offset[u] + (diminfo[u].block - 1))); + UINT32ENCODE(*p, (uint32_t)(offset[u] + (diminfo[u].block - 1))); /* Move the offset to the next sequence to start */ offset[fast_dim]+=diminfo[fast_dim].stride; @@ -2192,15 +2194,15 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t *buf) /* Encode number of hyperslabs */ block_count = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst); H5_CHECK_OVERFLOW(block_count, hsize_t, uint32_t); - UINT32ENCODE(buf, (uint32_t)block_count); + UINT32ENCODE(*p, (uint32_t)block_count); len+=4; /* Add 8 bytes times the rank for each hyperslab selected */ H5_CHECK_OVERFLOW((8 * space->extent.rank * block_count), hsize_t, size_t); - len += (size_t)(8 * space->extent.rank * block_count); + len += (uint32_t)(8 * space->extent.rank * block_count); /* Encode each hyperslab in selection */ - H5S_hyper_serialize_helper(space->select.sel_info.hslab->span_lst, start, end, (hsize_t)0, &buf); + H5S_hyper_serialize_helper(space->select.sel_info.hslab->span_lst, start, end, (hsize_t)0, p); } /* end else */ /* Encode length */ @@ -2216,9 +2218,12 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t *buf) PURPOSE Deserialize the current selection from a user-provided buffer. USAGE - herr_t H5S_hyper_deserialize(space, buf) - H5S_t *space; IN/OUT: Dataspace pointer to place selection into - uint8 *buf; IN: Buffer to retrieve serialized selection from + herr_t H5S_hyper_deserialize(space, p) + H5S_t *space; IN/OUT: Dataspace pointer to place + selection into + uint8 **p; OUT: Pointer to buffer holding serialized + selection. Will be advanced to end of + serialized selection. RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -2230,9 +2235,9 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t *buf) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_hyper_deserialize (H5S_t *space, const uint8_t *buf) +H5S_hyper_deserialize (H5S_t *space, const uint8_t **p) { - uint32_t rank; /* rank of points */ + unsigned rank; /* rank of points */ size_t num_elem=0; /* number of elements in selection */ hsize_t start[H5O_LAYOUT_NDIMS]; /* hyperslab start information */ hsize_t end[H5O_LAYOUT_NDIMS]; /* hyperslab end information */ @@ -2251,14 +2256,13 @@ H5S_hyper_deserialize (H5S_t *space, const uint8_t *buf) /* Check args */ HDassert(space); - HDassert(buf); + HDassert(p); + HDassert(*p); /* Deserialize slabs to select */ - buf+=16; /* Skip over selection header */ - UINT32DECODE(buf,rank); /* decode the rank of the point selection */ - if(rank!=space->extent.rank) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "rank of pointer does not match dataspace") - UINT32DECODE(buf,num_elem); /* decode the number of points */ + /* (The header and rank have already beed decoded) */ + rank = space->extent.rank; /* Retrieve rank from space */ + UINT32DECODE(*p,num_elem); /* decode the number of points */ /* Set the count & stride for all blocks */ for(tcount=count,tstride=stride,j=0; j<rank; j++,tstride++,tcount++) { @@ -2270,14 +2274,14 @@ H5S_hyper_deserialize (H5S_t *space, const uint8_t *buf) for(i=0; i<num_elem; i++) { /* Decode the starting points */ for(tstart=start,j=0; j<rank; j++,tstart++) - UINT32DECODE(buf, *tstart); + UINT32DECODE(*p, *tstart); /* Decode the ending points */ for(tend=end,j=0; j<rank; j++,tend++) - UINT32DECODE(buf, *tend); + UINT32DECODE(*p, *tend); /* Change the ending points into blocks */ - for(tblock=block,tstart=start,tend=end,j=0; j<(unsigned)rank; j++,tstart++,tend++,tblock++) + for(tblock=block,tstart=start,tend=end,j=0; j<rank; j++,tstart++,tend++,tblock++) *tblock=(*tend-*tstart)+1; /* Select or add the hyperslab to the current selection */ @@ -8856,3 +8860,109 @@ H5S_hyper_get_seq_list(const H5S_t *space, unsigned UNUSED flags, H5S_sel_iter_t FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_hyper_get_seq_list() */ + +/*-------------------------------------------------------------------------- + NAME + H5Sis_regular_hyperslab + PURPOSE + Determine if a hyperslab selection is regular + USAGE + htri_t H5Sis_regular_hyperslab(dsid) + hid_t dsid; IN: Dataspace ID of hyperslab selection to query + RETURNS + TRUE/FALSE for hyperslab selection, FAIL on error or when querying other + selection types. + DESCRIPTION + If a hyperslab can be represented as a single call to H5Sselect_hyperslab, + with the H5S_SELECT_SET option, it is regular. If the hyperslab selection + would require multiple calls to H5Sselect_hyperslab, it is irregular. + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +htri_t +H5Sis_regular_hyperslab(hid_t spaceid) +{ + H5S_t *space; /* Dataspace to query */ + htri_t ret_value; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE1("t", "i", spaceid); + + /* Check args */ + if(NULL == (space = (H5S_t *)H5I_object_verify(spaceid, H5I_DATASPACE))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + if(H5S_GET_SELECT_TYPE(space) != H5S_SEL_HYPERSLABS) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a hyperslab selection") + + ret_value = H5S_hyper_is_regular(space); + +done: + FUNC_LEAVE_API(ret_value) +} /* H5Sis_regular_hyperslab() */ + + +/*-------------------------------------------------------------------------- + NAME + H5Sgetregular_hyperslab + PURPOSE + Retrieve a regular hyperslab selection + USAGE + herr_t H5Sget_regular_hyperslab(dsid, start, stride, block, count) + hid_t dsid; IN: Dataspace ID of hyperslab selection to query + hsize_t start[]; OUT: Offset of start of hyperslab + hsize_t stride[]; OUT: Hyperslab stride + hsize_t count[]; OUT: Number of blocks included in hyperslab + hsize_t block[]; OUT: Size of block in hyperslab + RETURNS + Non-negative on success/Negative on failure. (It is an error to query + the regular hyperslab selections for non-regular hyperslab selections) + DESCRIPTION + Retrieve the start/stride/count/block for a regular hyperslab selection. + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + Note that if a hyperslab is originally regular, then becomes irregular + through selection operations, and then becomes regular again, the new + final regular selection may be equivalent but not identical to the + original regular selection. + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +herr_t +H5Sget_regular_hyperslab(hid_t spaceid, hsize_t start[], hsize_t stride[], + hsize_t count[], hsize_t block[]) +{ + H5S_t *space; /* Dataspace to query */ + unsigned u; /* Local index variable */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE5("e", "i*h*h*h*h", spaceid, start, stride, count, block); + + /* Check args */ + if(NULL == (space = (H5S_t *)H5I_object_verify(spaceid, H5I_DATASPACE))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + if(H5S_GET_SELECT_TYPE(space) != H5S_SEL_HYPERSLABS) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a hyperslab selection") + if(TRUE != H5S_hyper_is_regular(space)) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a regular hyperslab selection") + + /* Retrieve hyperslab parameters */ + if(start) + for(u = 0; u < space->extent.rank; u++) + start[u] = space->select.sel_info.hslab->app_diminfo[u].start; + if(stride) + for(u = 0; u < space->extent.rank; u++) + stride[u] = space->select.sel_info.hslab->app_diminfo[u].stride; + if(count) + for(u = 0; u < space->extent.rank; u++) + count[u] = space->select.sel_info.hslab->app_diminfo[u].count; + if(block) + for(u = 0; u < space->extent.rank; u++) + block[u] = space->select.sel_info.hslab->app_diminfo[u].block; + +done: + FUNC_LEAVE_API(ret_value) +} /* H5Sget_regular_hyperslab() */ + diff --git a/src/H5Snone.c b/src/H5Snone.c index 3c5eccc..c5ec2de 100644 --- a/src/H5Snone.c +++ b/src/H5Snone.c @@ -40,8 +40,8 @@ static herr_t H5S_none_get_seq_list(const H5S_t *space, unsigned flags, static herr_t H5S_none_release(H5S_t *space); static htri_t H5S_none_is_valid(const H5S_t *space); static hssize_t H5S_none_serial_size(const H5S_t *space); -static herr_t H5S_none_serialize(const H5S_t *space, uint8_t *buf); -static herr_t H5S_none_deserialize(H5S_t *space, const uint8_t *buf); +static herr_t H5S_none_serialize(const H5S_t *space, uint8_t **p); +static herr_t H5S_none_deserialize(H5S_t *space, const uint8_t **p); static herr_t H5S_none_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); static herr_t H5S_none_offset(const H5S_t *space, hsize_t *off); static htri_t H5S_none_is_contiguous(const H5S_t *space); @@ -464,9 +464,11 @@ H5S_none_serial_size(const H5S_t UNUSED *space) PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_none_serialize(space, buf) - H5S_t *space; IN: Dataspace pointer of selection to serialize - uint8 *buf; OUT: Buffer to put serialized selection into + herr_t H5S_none_serialize(space, p) + const H5S_t *space; IN: Dataspace with selection to serialize + uint8_t **p; OUT: Pointer to buffer to put serialized + selection. Will be advanced to end of + serialized selection. RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -478,17 +480,17 @@ H5S_none_serial_size(const H5S_t UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_none_serialize(const H5S_t *space, uint8_t *buf) +H5S_none_serialize(const H5S_t *space, uint8_t **p) { FUNC_ENTER_NOAPI_NOINIT_NOERR HDassert(space); /* Store the preamble information */ - UINT32ENCODE(buf, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(buf, (uint32_t)1); /* Store the version number */ - UINT32ENCODE(buf, (uint32_t)0); /* Store the un-used padding */ - UINT32ENCODE(buf, (uint32_t)0); /* Store the additional information length */ + UINT32ENCODE(*p, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(*p, (uint32_t)1); /* Store the version number */ + UINT32ENCODE(*p, (uint32_t)0); /* Store the un-used padding */ + UINT32ENCODE(*p, (uint32_t)0); /* Store the additional information length */ FUNC_LEAVE_NOAPI(SUCCEED) } /* H5S_none_serialize() */ @@ -500,9 +502,12 @@ H5S_none_serialize(const H5S_t *space, uint8_t *buf) PURPOSE Deserialize the current selection from a user-provided buffer. USAGE - herr_t H5S_none_deserialize(space, buf) - H5S_t *space; IN/OUT: Dataspace pointer to place selection into - uint8 *buf; IN: Buffer to retrieve serialized selection from + herr_t H5S_none_deserialize(space, p) + H5S_t *space; IN/OUT: Dataspace pointer to place + selection into + uint8 **p; OUT: Pointer to buffer holding serialized + selection. Will be advanced to end of + serialized selection. RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -514,13 +519,15 @@ H5S_none_serialize(const H5S_t *space, uint8_t *buf) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_none_deserialize(H5S_t *space, const uint8_t UNUSED *buf) +H5S_none_deserialize(H5S_t *space, const uint8_t UNUSED **p) { herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_NOAPI_NOINIT HDassert(space); + HDassert(p); + HDassert(*p); /* Change to "none" selection */ if(H5S_select_none(space) < 0) diff --git a/src/H5Spkg.h b/src/H5Spkg.h index 0a9df69..5f84717 100644 --- a/src/H5Spkg.h +++ b/src/H5Spkg.h @@ -130,9 +130,9 @@ typedef htri_t (*H5S_sel_is_valid_func_t)(const H5S_t *space); /* Method to determine number of bytes required to store current selection */ typedef hssize_t (*H5S_sel_serial_size_func_t)(const H5S_t *space); /* Method to store current selection in "serialized" form (a byte sequence suitable for storing on disk) */ -typedef herr_t (*H5S_sel_serialize_func_t)(const H5S_t *space, uint8_t *buf); +typedef herr_t (*H5S_sel_serialize_func_t)(const H5S_t *space, uint8_t **p); /* Method to store create selection from "serialized" form (a byte sequence suitable for storing on disk) */ -typedef herr_t (*H5S_sel_deserialize_func_t)(H5S_t *space, const uint8_t *buf); +typedef herr_t (*H5S_sel_deserialize_func_t)(H5S_t *space, const uint8_t **p); /* Method to determine smallest n-D bounding box containing the current selection */ typedef herr_t (*H5S_sel_bounds_func_t)(const H5S_t *space, hsize_t *start, hsize_t *end); /* Method to determine linear offset of initial element in selection within dataspace */ diff --git a/src/H5Spoint.c b/src/H5Spoint.c index 70842df..44e0510 100644 --- a/src/H5Spoint.c +++ b/src/H5Spoint.c @@ -41,8 +41,8 @@ static herr_t H5S_point_get_seq_list(const H5S_t *space, unsigned flags, static herr_t H5S_point_release(H5S_t *space); static htri_t H5S_point_is_valid(const H5S_t *space); static hssize_t H5S_point_serial_size(const H5S_t *space); -static herr_t H5S_point_serialize(const H5S_t *space, uint8_t *buf); -static herr_t H5S_point_deserialize(H5S_t *space, const uint8_t *buf); +static herr_t H5S_point_serialize(const H5S_t *space, uint8_t **p); +static herr_t H5S_point_deserialize(H5S_t *space, const uint8_t **p); static herr_t H5S_point_bounds(const H5S_t *space, hsize_t *start, hsize_t *end); static herr_t H5S_point_offset(const H5S_t *space, hsize_t *off); static htri_t H5S_point_is_contiguous(const H5S_t *space); @@ -804,9 +804,11 @@ H5S_point_serial_size (const H5S_t *space) PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_point_serialize(space, buf) - H5S_t *space; IN: Dataspace pointer of selection to serialize - uint8 *buf; OUT: Buffer to put serialized selection into + herr_t H5S_point_serialize(space, p) + const H5S_t *space; IN: Dataspace with selection to serialize + uint8_t **p; OUT: Pointer to buffer to put serialized + selection. Will be advanced to end of + serialized selection. RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -818,7 +820,7 @@ H5S_point_serial_size (const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_point_serialize (const H5S_t *space, uint8_t *buf) +H5S_point_serialize (const H5S_t *space, uint8_t **p) { H5S_pnt_node_t *curr; /* Point information nodes */ uint8_t *lenp; /* pointer to length location for later storage */ @@ -830,18 +832,18 @@ H5S_point_serialize (const H5S_t *space, uint8_t *buf) HDassert(space); /* Store the preamble information */ - UINT32ENCODE(buf, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(buf, (uint32_t)1); /* Store the version number */ - UINT32ENCODE(buf, (uint32_t)0); /* Store the un-used padding */ - lenp=buf; /* keep the pointer to the length location for later */ - buf+=4; /* skip over space for length */ + UINT32ENCODE(*p, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(*p, (uint32_t)1); /* Store the version number */ + UINT32ENCODE(*p, (uint32_t)0); /* Store the un-used padding */ + lenp=*p; /* keep the pointer to the length location for later */ + *p+=4; /* skip over space for length */ /* Encode number of dimensions */ - UINT32ENCODE(buf, (uint32_t)space->extent.rank); + UINT32ENCODE(*p, (uint32_t)space->extent.rank); len+=4; /* Encode number of elements */ - UINT32ENCODE(buf, (uint32_t)space->select.num_elem); + UINT32ENCODE(*p, (uint32_t)space->select.num_elem); len+=4; /* Encode each point in selection */ @@ -852,7 +854,7 @@ H5S_point_serialize (const H5S_t *space, uint8_t *buf) /* Encode each point */ for(u=0; u<space->extent.rank; u++) - UINT32ENCODE(buf, (uint32_t)curr->pnt[u]); + UINT32ENCODE(*p, (uint32_t)curr->pnt[u]); curr=curr->next; } /* end while */ @@ -870,9 +872,12 @@ H5S_point_serialize (const H5S_t *space, uint8_t *buf) PURPOSE Deserialize the current selection from a user-provided buffer. USAGE - herr_t H5S_point_deserialize(space, buf) - H5S_t *space; IN/OUT: Dataspace pointer to place selection into - uint8 *buf; IN: Buffer to retrieve serialized selection from + herr_t H5S_point_deserialize(space, p) + H5S_t *space; IN/OUT: Dataspace pointer to place + selection into + uint8 **p; OUT: Pointer to buffer holding serialized + selection. Will be advanced to end of + serialized selection. RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -884,10 +889,10 @@ H5S_point_serialize (const H5S_t *space, uint8_t *buf) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S_point_deserialize (H5S_t *space, const uint8_t *buf) +H5S_point_deserialize (H5S_t *space, const uint8_t **p) { H5S_seloper_t op=H5S_SELECT_SET; /* Selection operation */ - uint32_t rank; /* Rank of points */ + unsigned rank; /* Rank of points */ size_t num_elem=0; /* Number of elements in selection */ hsize_t *coord=NULL, *tcoord; /* Pointer to array of elements */ unsigned i, j; /* local counting variables */ @@ -897,14 +902,13 @@ H5S_point_deserialize (H5S_t *space, const uint8_t *buf) /* Check args */ HDassert(space); - HDassert(buf); + HDassert(p); + HDassert(*p); /* Deserialize points to select */ - buf += 16; /* Skip over selection header */ - UINT32DECODE(buf, rank); /* decode the rank of the point selection */ - if(rank != space->extent.rank) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "rank of pointer does not match dataspace") - UINT32DECODE(buf, num_elem); /* decode the number of points */ + /* (The header and rank have already beed decoded) */ + rank = space->extent.rank; /* Retrieve rank from space */ + UINT32DECODE(*p, num_elem); /* decode the number of points */ /* Allocate space for the coordinates */ if(NULL == (coord = (hsize_t *)H5MM_malloc(num_elem * rank * sizeof(hsize_t)))) @@ -913,7 +917,7 @@ H5S_point_deserialize (H5S_t *space, const uint8_t *buf) /* Retrieve the coordinates from the buffer */ for(tcoord = coord, i = 0; i < num_elem; i++) for(j = 0; j < (unsigned)rank; j++, tcoord++) - UINT32DECODE(buf, *tcoord); + UINT32DECODE(*p, *tcoord); /* Select points */ if(H5S_select_elements(space, op, num_elem, (const hsize_t *)coord) < 0) diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h index 44cd6c3..7b7b8c6 100644 --- a/src/H5Sprivate.h +++ b/src/H5Sprivate.h @@ -206,7 +206,7 @@ H5_DLL int H5S_extent_get_dims(const H5S_extent_t *ext, hsize_t dims[], hsize_t H5_DLL htri_t H5S_extent_equal(const H5S_t *ds1, const H5S_t *ds2); /* Operations on selections */ -H5_DLL herr_t H5S_select_deserialize(H5S_t *space, const uint8_t *buf); +H5_DLL herr_t H5S_select_deserialize(H5S_t **space, const uint8_t **p); H5_DLL H5S_sel_type H5S_get_select_type(const H5S_t *space); H5_DLL herr_t H5S_select_iterate(void *buf, hid_t type_id, const H5S_t *space, H5D_operator_t op, void *operator_data); @@ -227,7 +227,7 @@ H5_DLL herr_t H5S_select_get_seq_list(const H5S_t *space, unsigned flags, H5S_sel_iter_t *iter, size_t maxseq, size_t maxbytes, size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len); H5_DLL hssize_t H5S_select_serial_size(const H5S_t *space); -H5_DLL herr_t H5S_select_serialize(const H5S_t *space, uint8_t *buf); +H5_DLL herr_t H5S_select_serialize(const H5S_t *space, uint8_t **p); H5_DLL htri_t H5S_select_is_contiguous(const H5S_t *space); H5_DLL htri_t H5S_select_is_single(const H5S_t *space); H5_DLL htri_t H5S_select_is_regular(const H5S_t *space); diff --git a/src/H5Spublic.h b/src/H5Spublic.h index 0a39ce1..37d3866 100644 --- a/src/H5Spublic.h +++ b/src/H5Spublic.h @@ -137,6 +137,9 @@ H5_DLL herr_t H5Sselect_all(hid_t spaceid); H5_DLL herr_t H5Sselect_none(hid_t spaceid); H5_DLL herr_t H5Soffset_simple(hid_t space_id, const hssize_t *offset); H5_DLL htri_t H5Sselect_valid(hid_t spaceid); +H5_DLL htri_t H5Sis_regular_hyperslab(hid_t spaceid); +H5_DLL htri_t H5Sget_regular_hyperslab(hid_t spaceid, hsize_t start[], + hsize_t stride[], hsize_t count[], hsize_t block[]); H5_DLL hssize_t H5Sget_select_hyper_nblocks(hid_t spaceid); H5_DLL hssize_t H5Sget_select_elem_npoints(hid_t spaceid); H5_DLL herr_t H5Sget_select_hyper_blocklist(hid_t spaceid, hsize_t startblock, diff --git a/src/H5Sselect.c b/src/H5Sselect.c index 2cb4b38..a4f13d7 100644 --- a/src/H5Sselect.c +++ b/src/H5Sselect.c @@ -239,9 +239,11 @@ H5S_select_serial_size(const H5S_t *space) PURPOSE Serialize the selection for a dataspace into a buffer USAGE - herr_t H5S_select_serialize(space, buf) + herr_t H5S_select_serialize(space, p) const H5S_t *space; IN: Dataspace with selection to serialize - uint8_t *buf; OUT: Buffer to put serialized selection + uint8_t **p; OUT: Pointer to buffer to put serialized + selection. Will be advanced to end of + serialized selection. RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -256,17 +258,17 @@ H5S_select_serial_size(const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_select_serialize(const H5S_t *space, uint8_t *buf) +H5S_select_serialize(const H5S_t *space, uint8_t **p) { herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT_NOERR HDassert(space); - HDassert(buf); + HDassert(p); /* Call the selection type's serialize function */ - ret_value=(*space->select.type->serialize)(space,buf); + ret_value=(*space->select.type->serialize)(space,p); FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_select_serialize() */ @@ -428,9 +430,13 @@ H5S_select_valid(const H5S_t *space) Deserialize the current selection from a user-provided buffer into a real selection in the dataspace. USAGE - herr_t H5S_select_deserialize(space, buf) - H5S_t *space; IN/OUT: Dataspace pointer to place selection into - uint8 *buf; IN: Buffer to retrieve serialized selection from + herr_t H5S_select_deserialize(space, p) + H5S_t **space; IN/OUT: Dataspace pointer to place + selection into. Will be allocated if not + provided. + uint8 **p; OUT: Pointer to buffer holding serialized + selection. Will be advanced to end of + serialized selection. RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -444,42 +450,81 @@ H5S_select_valid(const H5S_t *space) REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5S_select_deserialize (H5S_t *space, const uint8_t *buf) +H5S_select_deserialize (H5S_t **space, const uint8_t **p) { - const uint8_t *tbuf; /* Temporary pointer to the selection type */ - uint32_t sel_type; /* Pointer to the selection type */ + H5S_t *tmp_space; /* Pointer to actual dataspace to use, either + *space or a newly allocated one */ + uint32_t sel_type; /* Pointer to the selection type */ herr_t ret_value=FAIL; /* return value */ FUNC_ENTER_NOAPI(FAIL) HDassert(space); - tbuf=buf; - UINT32DECODE(tbuf, sel_type); + /* Allocate space if not provided */ + if(!*space) { + if(NULL == (tmp_space = H5S_create(H5S_SIMPLE))) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "can't create dataspace") + } /* end if */ + else + tmp_space = *space; + + /* Decode selection type */ + UINT32DECODE(*p, sel_type); + + /* Skip over the remainder of the header */ + *p += 12; + + /* Decode and check or patch rank for point and hyperslab selections */ + if((sel_type == H5S_SEL_POINTS) || (sel_type == H5S_SEL_HYPERSLABS)) { + uint32_t rank; /* Rank of dataspace */ + + /* Decode the rank of the point selection */ + UINT32DECODE(*p,rank); + + if(!*space) + /* Patch the rank of the allocated dataspace */ + tmp_space->extent.rank = rank; + else + /* Verify the rank of the provided dataspace */ + if(rank != tmp_space->extent.rank) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "rank of serialized selection does not match dataspace") + } /* end if */ + + /* Make routine for selection type */ switch(sel_type) { case H5S_SEL_POINTS: /* Sequence of points selected */ - ret_value=(*H5S_sel_point->deserialize)(space,buf); + ret_value = (*H5S_sel_point->deserialize)(tmp_space, p); break; case H5S_SEL_HYPERSLABS: /* Hyperslab selection defined */ - ret_value=(*H5S_sel_hyper->deserialize)(space,buf); + ret_value = (*H5S_sel_hyper->deserialize)(tmp_space, p); break; case H5S_SEL_ALL: /* Entire extent selected */ - ret_value=(*H5S_sel_all->deserialize)(space,buf); + ret_value = (*H5S_sel_all->deserialize)(tmp_space, p); break; case H5S_SEL_NONE: /* Nothing selected */ - ret_value=(*H5S_sel_none->deserialize)(space,buf); + ret_value = (*H5S_sel_none->deserialize)(tmp_space, p); break; default: break; } - if(ret_value<0) + if(ret_value < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTLOAD, FAIL, "can't deserialize selection") + /* Return space to the caller if allocated */ + if(!*space) + *space = tmp_space; + done: + /* Free temporary space if not passed to caller (only happens on error) */ + if(!*space && tmp_space) + if(H5S_close(tmp_space) < 0) + HDONE_ERROR(H5E_DATASPACE, H5E_CANTFREE, FAIL, "can't close dataspace") + FUNC_LEAVE_NOAPI(ret_value) } /* H5S_select_deserialize() */ @@ -1074,16 +1074,14 @@ H5T_init_interface(void) */ /* floating point */ -#if H5T_CONV_INTERNAL_FP_FP status |= H5T_register(H5T_PERS_HARD, "flt_dbl", native_float, native_double, H5T__conv_float_double, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "dbl_flt", native_double, native_float, H5T__conv_double_float, H5AC_dxpl_id, FALSE); -#endif /*H5T_CONV_INTERNAL_FP_FP*/ -#if H5T_CONV_INTERNAL_FP_LDOUBLE +#if H5_SIZEOF_LONG_DOUBLE != 0 status |= H5T_register(H5T_PERS_HARD, "flt_ldbl", native_float, native_ldouble, H5T__conv_float_ldouble, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "dbl_ldbl", native_double, native_ldouble, H5T__conv_double_ldouble, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "ldbl_flt", native_ldouble, native_float, H5T__conv_ldouble_float, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "ldbl_dbl", native_ldouble, native_double, H5T__conv_ldouble_double, H5AC_dxpl_id, FALSE); -#endif /*H5T_CONV_INTERNAL_FP_LDOUBLE*/ +#endif /* H5_SIZEOF_LONG_DOUBLE != 0 */ /* from long long */ status |= H5T_register(H5T_PERS_HARD, "llong_ullong", native_llong, native_ullong, H5T__conv_llong_ullong, H5AC_dxpl_id, FALSE); @@ -1188,151 +1186,101 @@ H5T_init_interface(void) /* From char to floats */ status |= H5T_register(H5T_PERS_HARD, "schar_flt", native_schar, native_float, H5T__conv_schar_float, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "schar_dbl", native_schar, native_double, H5T__conv_schar_double, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE status |= H5T_register(H5T_PERS_HARD, "schar_ldbl", native_schar, native_ldouble, H5T__conv_schar_ldouble, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /* From unsigned char to floats */ status |= H5T_register(H5T_PERS_HARD, "uchar_flt", native_uchar, native_float, H5T__conv_uchar_float, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "uchar_dbl", native_uchar, native_double, H5T__conv_uchar_double, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE status |= H5T_register(H5T_PERS_HARD, "uchar_ldbl", native_uchar, native_ldouble, H5T__conv_uchar_ldouble, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /* From short to floats */ status |= H5T_register(H5T_PERS_HARD, "short_flt", native_short, native_float, H5T__conv_short_float, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "short_dbl", native_short, native_double, H5T__conv_short_double, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE status |= H5T_register(H5T_PERS_HARD, "short_ldbl", native_short, native_ldouble, H5T__conv_short_ldouble, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /* From unsigned short to floats */ status |= H5T_register(H5T_PERS_HARD, "ushort_flt", native_ushort, native_float, H5T__conv_ushort_float, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "ushort_dbl", native_ushort, native_double, H5T__conv_ushort_double, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE status |= H5T_register(H5T_PERS_HARD, "ushort_ldbl", native_ushort, native_ldouble, H5T__conv_ushort_ldouble, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /* From int to floats */ status |= H5T_register(H5T_PERS_HARD, "int_flt", native_int, native_float, H5T__conv_int_float, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "int_dbl", native_int, native_double, H5T__conv_int_double, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE status |= H5T_register(H5T_PERS_HARD, "int_ldbl", native_int, native_ldouble, H5T__conv_int_ldouble, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /* From unsigned int to floats */ status |= H5T_register(H5T_PERS_HARD, "uint_flt", native_uint, native_float, H5T__conv_uint_float, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "uint_dbl", native_uint, native_double, H5T__conv_uint_double, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE status |= H5T_register(H5T_PERS_HARD, "uint_ldbl", native_uint, native_ldouble, H5T__conv_uint_ldouble, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /* From long to floats */ status |= H5T_register(H5T_PERS_HARD, "long_flt", native_long, native_float, H5T__conv_long_float, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "long_dbl", native_long, native_double, H5T__conv_long_double, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE status |= H5T_register(H5T_PERS_HARD, "long_ldbl", native_long, native_ldouble, H5T__conv_long_ldouble, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /* From unsigned long to floats */ -#if H5T_CONV_INTERNAL_ULONG_FLT status |= H5T_register(H5T_PERS_HARD, "ulong_flt", native_ulong, native_float, H5T__conv_ulong_float, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_ULONG_FLT */ -#if H5T_CONV_INTERNAL_ULONG_DBL status |= H5T_register(H5T_PERS_HARD, "ulong_dbl", native_ulong, native_double, H5T__conv_ulong_double, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_ULONG_DBL */ -#if H5T_CONV_INTERNAL_ULONG_LDOUBLE status |= H5T_register(H5T_PERS_HARD, "ulong_ldbl", native_ulong, native_ldouble, H5T__conv_ulong_ldouble, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_ULONG_LDOUBLE */ /* From long long to floats */ status |= H5T_register(H5T_PERS_HARD, "llong_flt", native_llong, native_float, H5T__conv_llong_float, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "llong_dbl", native_llong, native_double, H5T__conv_llong_double, H5AC_dxpl_id, FALSE); -#ifdef H5T_CONV_INTERNAL_LLONG_LDOUBLE status |= H5T_register(H5T_PERS_HARD, "llong_ldbl", native_llong, native_ldouble, H5T__conv_llong_ldouble, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_LLONG_LDOUBLE */ /* From unsigned long long to floats */ -#if H5T_CONV_INTERNAL_ULLONG_FP status |= H5T_register(H5T_PERS_HARD, "ullong_flt", native_ullong, native_float, H5T__conv_ullong_float, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "ullong_dbl", native_ullong, native_double, H5T__conv_ullong_double, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_ULLONG_FP */ -#ifdef H5T_CONV_INTERNAL_ULLONG_LDOUBLE status |= H5T_register(H5T_PERS_HARD, "ullong_ldbl", native_ullong, native_ldouble, H5T__conv_ullong_ldouble, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_ULLONG_LDOUBLE */ /* From floats to char */ status |= H5T_register(H5T_PERS_HARD, "flt_schar", native_float, native_schar, H5T__conv_float_schar, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "dbl_schar", native_double, native_schar, H5T__conv_double_schar, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER status |= H5T_register(H5T_PERS_HARD, "ldbl_schar", native_ldouble, native_schar, H5T__conv_ldouble_schar, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_LDOUBLE_INTEGER */ /* From floats to unsigned char */ status |= H5T_register(H5T_PERS_HARD, "flt_uchar", native_float, native_uchar, H5T__conv_float_uchar, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "dbl_uchar", native_double, native_uchar, H5T__conv_double_uchar, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER status |= H5T_register(H5T_PERS_HARD, "ldbl_uchar", native_ldouble, native_uchar, H5T__conv_ldouble_uchar, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_LDOUBLE_INTEGER */ /* From floats to short */ status |= H5T_register(H5T_PERS_HARD, "flt_short", native_float, native_short, H5T__conv_float_short, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "dbl_short", native_double, native_short, H5T__conv_double_short, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER status |= H5T_register(H5T_PERS_HARD, "ldbl_short", native_ldouble, native_short, H5T__conv_ldouble_short, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_LDOUBLE_INTEGER */ /* From floats to unsigned short */ status |= H5T_register(H5T_PERS_HARD, "flt_ushort", native_float, native_ushort, H5T__conv_float_ushort, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "dbl_ushort", native_double, native_ushort, H5T__conv_double_ushort, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER status |= H5T_register(H5T_PERS_HARD, "ldbl_ushort", native_ldouble, native_ushort, H5T__conv_ldouble_ushort, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_LDOUBLE_INTEGER */ /* From floats to int */ status |= H5T_register(H5T_PERS_HARD, "flt_int", native_float, native_int, H5T__conv_float_int, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "dbl_int", native_double, native_int, H5T__conv_double_int, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER status |= H5T_register(H5T_PERS_HARD, "ldbl_int", native_ldouble, native_int, H5T__conv_ldouble_int, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_LDOUBLE_INTEGER */ /* From floats to unsigned int */ status |= H5T_register(H5T_PERS_HARD, "flt_uint", native_float, native_uint, H5T__conv_float_uint, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "dbl_uint", native_double, native_uint, H5T__conv_double_uint, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_LDOUBLE_UINT status |= H5T_register(H5T_PERS_HARD, "ldbl_uint", native_ldouble, native_uint, H5T__conv_ldouble_uint, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_LDOUBLE_UINT */ status |= H5T_register(H5T_PERS_HARD, "flt_long", native_float, native_long, H5T__conv_float_long, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "dbl_long", native_double, native_long, H5T__conv_double_long, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER status |= H5T_register(H5T_PERS_HARD, "ldbl_long", native_ldouble, native_long, H5T__conv_ldouble_long, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_LDOUBLE_INTEGER */ /* From floats to unsigned long */ status |= H5T_register(H5T_PERS_HARD, "flt_ulong", native_float, native_ulong, H5T__conv_float_ulong, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "dbl_ulong", native_double, native_ulong, H5T__conv_double_ulong, H5AC_dxpl_id, FALSE); -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER status |= H5T_register(H5T_PERS_HARD, "ldbl_ulong", native_ldouble, native_ulong, H5T__conv_ldouble_ulong, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_LDOUBLE_INTEGER */ /* From floats to long long */ -#if H5T_CONV_INTERNAL_FP_LLONG status |= H5T_register(H5T_PERS_HARD, "flt_llong", native_float, native_llong, H5T__conv_float_llong, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "dbl_llong", native_double, native_llong, H5T__conv_double_llong, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_FP_LLONG */ -#ifdef H5T_CONV_INTERNAL_LDOUBLE_LLONG status |= H5T_register(H5T_PERS_HARD, "ldbl_llong", native_ldouble, native_llong, H5T__conv_ldouble_llong, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_LDOUBLE_LLONG */ /* From floats to unsigned long long */ -#if H5T_CONV_INTERNAL_FP_ULLONG status |= H5T_register(H5T_PERS_HARD, "flt_ullong", native_float, native_ullong, H5T__conv_float_ullong, H5AC_dxpl_id, FALSE); status |= H5T_register(H5T_PERS_HARD, "dbl_ullong", native_double, native_ullong, H5T__conv_double_ullong, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_FP_ULLONG */ -#if H5T_CONV_INTERNAL_LDOUBLE_ULLONG status |= H5T_register(H5T_PERS_HARD, "ldbl_ullong", native_ldouble, native_ullong, H5T__conv_ldouble_ullong, H5AC_dxpl_id, FALSE); -#endif /* H5T_CONV_INTERNAL_LDOUBLE_ULLONG */ /* * The special no-op conversion is the fastest, so we list it last. The @@ -489,7 +489,7 @@ H5TS_win32_thread_exit(void) *-------------------------------------------------------------------------- */ H5TS_thread_t -H5TS_create_thread(void *func, H5TS_attr_t *attr, void *udata) +H5TS_create_thread(void *(*func)(void *), H5TS_attr_t *attr, void *udata) { H5TS_thread_t ret_value; diff --git a/src/H5TSprivate.h b/src/H5TSprivate.h index cc22f96..5394b77 100644 --- a/src/H5TSprivate.h +++ b/src/H5TSprivate.h @@ -122,7 +122,7 @@ H5_DLL herr_t H5TS_mutex_lock(H5TS_mutex_t *mutex); H5_DLL herr_t H5TS_mutex_unlock(H5TS_mutex_t *mutex); H5_DLL herr_t H5TS_cancel_count_inc(void); H5_DLL herr_t H5TS_cancel_count_dec(void); -H5_DLL H5TS_thread_t H5TS_create_thread(void * func, H5TS_attr_t * attr, void *udata); +H5_DLL H5TS_thread_t H5TS_create_thread(void *(*func)(void *), H5TS_attr_t * attr, void *udata); #if defined c_plusplus || defined __cplusplus } diff --git a/src/H5Tcommit.c b/src/H5Tcommit.c index 315920e..bd1260e 100644 --- a/src/H5Tcommit.c +++ b/src/H5Tcommit.c @@ -717,7 +717,7 @@ H5T_open(const H5G_loc_t *loc, hid_t dxpl_id) else { if(NULL == (dt = H5FL_MALLOC(H5T_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate space for datatype") - + dt->vol_obj = NULL; #if defined(H5_USING_MEMCHECKER) || !defined(NDEBUG) /* Clear object location */ if(H5O_loc_reset(&(dt->oloc)) < 0) @@ -912,7 +912,7 @@ H5T_get_named_type(const H5T_t *dt) *------------------------------------------------------------------------- */ H5T_t * -H5T_get_actual_type(const H5T_t *dt) +H5T_get_actual_type(H5T_t *dt) { H5T_t *ret_value = NULL; /* Return value */ diff --git a/src/H5Tconv.c b/src/H5Tconv.c index 58b0b46..df85553 100644 --- a/src/H5Tconv.c +++ b/src/H5Tconv.c @@ -7086,7 +7086,6 @@ H5T__conv_ullong_llong(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * destination values are packed. *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_FP_FP herr_t H5T__conv_float_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7095,7 +7094,6 @@ H5T__conv_float_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_fF(FLOAT, DOUBLE, float, double, -, -); } -#endif /* H5T_CONV_INTERNAL_FP_FP */ /*------------------------------------------------------------------------- @@ -7113,7 +7111,7 @@ H5T__conv_float_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_FP_LDOUBLE +#if H5_SIZEOF_LONG_DOUBLE != 0 herr_t H5T__conv_float_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7122,7 +7120,7 @@ H5T__conv_float_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_fF(FLOAT, LDOUBLE, float, long double, -, -); } -#endif /*H5T_CONV_INTERNAL_FP_LDOUBLE*/ +#endif /* H5_SIZEOF_LONG_DOUBLE != 0 */ /*------------------------------------------------------------------------- @@ -7147,7 +7145,6 @@ H5T__conv_float_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * destination values are packed. *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_FP_FP herr_t H5T__conv_double_float (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7156,7 +7153,6 @@ H5T__conv_double_float (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_Ff(DOUBLE, FLOAT, double, float, -FLT_MAX, FLT_MAX); } -#endif /*H5T_CONV_INTERNAL_FP_FP*/ /*------------------------------------------------------------------------- @@ -7174,7 +7170,7 @@ H5T__conv_double_float (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_FP_LDOUBLE +#if H5_SIZEOF_LONG_DOUBLE != 0 herr_t H5T__conv_double_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7183,7 +7179,7 @@ H5T__conv_double_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_fF(DOUBLE, LDOUBLE, double, long double, -, -); } -#endif /*H5T_CONV_INTERNAL_FP_LDOUBLE*/ +#endif /* H5_SIZEOF_LONG_DOUBLE != 0 */ /*------------------------------------------------------------------------- @@ -7201,7 +7197,7 @@ H5T__conv_double_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_FP_LDOUBLE +#if H5_SIZEOF_LONG_DOUBLE != 0 herr_t H5T__conv_ldouble_float (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7210,7 +7206,7 @@ H5T__conv_ldouble_float (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_Ff(LDOUBLE, FLOAT, long double, float, -FLT_MAX, FLT_MAX); } -#endif /* H5T_CONV_INTERNAL_FP_LDOUBLE */ +#endif /* H5_SIZEOF_LONG_DOUBLE != 0 */ /*------------------------------------------------------------------------- @@ -7228,7 +7224,7 @@ H5T__conv_ldouble_float (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_FP_LDOUBLE +#if H5_SIZEOF_LONG_DOUBLE != 0 herr_t H5T__conv_ldouble_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7237,7 +7233,7 @@ H5T__conv_ldouble_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_Ff(LDOUBLE, DOUBLE, long double, double, -DBL_MAX, DBL_MAX); } -#endif /*H5T_CONV_INTERNAL_FP_LDOUBLE*/ +#endif /* H5_SIZEOF_LONG_DOUBLE != 0 */ /*------------------------------------------------------------------------- @@ -7305,7 +7301,6 @@ H5T__conv_schar_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE herr_t H5T__conv_schar_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7314,7 +7309,6 @@ H5T__conv_schar_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(SCHAR, LDOUBLE, signed char, long double, -, -); } -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /*------------------------------------------------------------------------- @@ -7382,7 +7376,6 @@ H5T__conv_uchar_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE herr_t H5T__conv_uchar_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7391,7 +7384,6 @@ H5T__conv_uchar_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(UCHAR, LDOUBLE, unsigned char, long double, -, -); } -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /*------------------------------------------------------------------------- @@ -7459,7 +7451,6 @@ H5T__conv_short_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE herr_t H5T__conv_short_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7468,7 +7459,6 @@ H5T__conv_short_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(SHORT, LDOUBLE, short, long double, -, -); } -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /*------------------------------------------------------------------------- @@ -7536,7 +7526,6 @@ H5T__conv_ushort_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE herr_t H5T__conv_ushort_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7545,7 +7534,6 @@ H5T__conv_ushort_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(USHORT, LDOUBLE, unsigned short, long double, -, -); } -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /*------------------------------------------------------------------------- @@ -7613,7 +7601,6 @@ H5T__conv_int_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE herr_t H5T__conv_int_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7622,7 +7609,6 @@ H5T__conv_int_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(INT, LDOUBLE, int, long double, -, -); } -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /*------------------------------------------------------------------------- @@ -7690,7 +7676,6 @@ H5T__conv_uint_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE herr_t H5T__conv_uint_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7699,7 +7684,6 @@ H5T__conv_uint_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(UINT, LDOUBLE, unsigned int, long double, -, -); } -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /*------------------------------------------------------------------------- @@ -7767,7 +7751,6 @@ H5T__conv_long_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_INTEGER_LDOUBLE herr_t H5T__conv_long_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7776,7 +7759,6 @@ H5T__conv_long_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(LONG, LDOUBLE, long, long double, -, -); } -#endif /* H5T_CONV_INTERNAL_INTEGER_LDOUBLE */ /*------------------------------------------------------------------------- @@ -7794,7 +7776,6 @@ H5T__conv_long_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_ULONG_FLT herr_t H5T__conv_ulong_float (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7803,7 +7784,6 @@ H5T__conv_ulong_float (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(ULONG, FLOAT, unsigned long, float, -, -); } -#endif /* H5T_CONV_INTERNAL_ULONG_FLT */ /*------------------------------------------------------------------------- @@ -7821,7 +7801,6 @@ H5T__conv_ulong_float (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_ULONG_DBL herr_t H5T__conv_ulong_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7830,7 +7809,6 @@ H5T__conv_ulong_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(ULONG, DOUBLE, unsigned long, double, -, -); } -#endif /* H5T_CONV_INTERNAL_ULONG_DBL */ /*------------------------------------------------------------------------- @@ -7848,7 +7826,6 @@ H5T__conv_ulong_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_ULONG_LDOUBLE herr_t H5T__conv_ulong_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7857,7 +7834,6 @@ H5T__conv_ulong_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(ULONG, LDOUBLE, unsigned long, long double, -, -); } -#endif /* H5T_CONV_INTERNAL_ULONG_LDOUBLE */ /*------------------------------------------------------------------------- @@ -7925,7 +7901,6 @@ H5T__conv_llong_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_LLONG_LDOUBLE herr_t H5T__conv_llong_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7934,7 +7909,6 @@ H5T__conv_llong_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(LLONG, LDOUBLE, long long, long double, -, -); } -#endif /* H5T_CONV_INTERNAL_LLONG_LDOUBLE */ /*------------------------------------------------------------------------- @@ -7952,7 +7926,6 @@ H5T__conv_llong_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_ULLONG_FP herr_t H5T__conv_ullong_float (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7961,7 +7934,6 @@ H5T__conv_ullong_float (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(ULLONG, FLOAT, unsigned long long, float, -, -); } -#endif /*H5T_CONV_INTERNAL_ULLONG_FP*/ /*------------------------------------------------------------------------- @@ -7979,7 +7951,6 @@ H5T__conv_ullong_float (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_ULLONG_FP herr_t H5T__conv_ullong_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -7988,7 +7959,6 @@ H5T__conv_ullong_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(ULLONG, DOUBLE, unsigned long long, double, -, -); } -#endif /*H5T_CONV_INTERNAL_ULLONG_FP*/ /*------------------------------------------------------------------------- @@ -8006,7 +7976,6 @@ H5T__conv_ullong_double (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_ULLONG_LDOUBLE herr_t H5T__conv_ullong_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8015,7 +7984,6 @@ H5T__conv_ullong_ldouble (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_xF(ULLONG, LDOUBLE, unsigned long long, long double, -, -); } -#endif /*H5T_CONV_INTERNAL_ULLONG_LDOUBLE*/ /*------------------------------------------------------------------------- @@ -8141,7 +8109,6 @@ H5_GCC_DIAG_ON(float-equal) * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER herr_t H5T__conv_ldouble_schar (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8152,7 +8119,6 @@ H5_GCC_DIAG_OFF(float-equal) H5T_CONV_Fx(LDOUBLE, SCHAR, long double, signed char, SCHAR_MIN, SCHAR_MAX); H5_GCC_DIAG_ON(float-equal) } -#endif /* H5T_CONV_INTERNAL_LDOUBLE_INTEGER */ /*------------------------------------------------------------------------- @@ -8170,7 +8136,6 @@ H5_GCC_DIAG_ON(float-equal) * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER herr_t H5T__conv_ldouble_uchar (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8181,7 +8146,6 @@ H5_GCC_DIAG_OFF(float-equal) H5T_CONV_Fx(LDOUBLE, UCHAR, long double, unsigned char, 0, UCHAR_MAX); H5_GCC_DIAG_ON(float-equal) } -#endif /* H5T_CONV_INTERNAL_LDOUBLE_INTEGER */ /*------------------------------------------------------------------------- @@ -8307,7 +8271,6 @@ H5_GCC_DIAG_ON(float-equal) * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER herr_t H5T__conv_ldouble_short (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8318,7 +8281,6 @@ H5_GCC_DIAG_OFF(float-equal) H5T_CONV_Fx(LDOUBLE, SHORT, long double, short, SHRT_MIN, SHRT_MAX); H5_GCC_DIAG_ON(float-equal) } -#endif /*H5T_CONV_INTERNAL_LDOUBLE_INTEGER*/ /*------------------------------------------------------------------------- @@ -8336,7 +8298,6 @@ H5_GCC_DIAG_ON(float-equal) * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER herr_t H5T__conv_ldouble_ushort (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8347,7 +8308,6 @@ H5_GCC_DIAG_OFF(float-equal) H5T_CONV_Fx(LDOUBLE, USHORT, long double, unsigned short, 0, USHRT_MAX); H5_GCC_DIAG_ON(float-equal) } -#endif /* H5T_CONV_INTERNAL_LDOUBLE_INTEGER */ /*------------------------------------------------------------------------- @@ -8473,7 +8433,6 @@ H5_GCC_DIAG_ON(float-equal) * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER herr_t H5T__conv_ldouble_int (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8484,7 +8443,6 @@ H5_GCC_DIAG_OFF(float-equal) H5T_CONV_Fx(LDOUBLE, INT, long double, int, INT_MIN, INT_MAX); H5_GCC_DIAG_ON(float-equal) } -#endif /* H5T_CONV_INTERNAL_LDOUBLE_INTEGER */ /*------------------------------------------------------------------------- @@ -8502,7 +8460,6 @@ H5_GCC_DIAG_ON(float-equal) * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_LDOUBLE_UINT herr_t H5T__conv_ldouble_uint (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8513,7 +8470,6 @@ H5_GCC_DIAG_OFF(float-equal) H5T_CONV_Fx(LDOUBLE, UINT, long double, unsigned int, 0, UINT_MAX); H5_GCC_DIAG_ON(float-equal) } -#endif /* H5T_CONV_INTERNAL_LDOUBLE_UINT */ /*------------------------------------------------------------------------- @@ -8639,7 +8595,6 @@ H5_GCC_DIAG_ON(float-equal) * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER herr_t H5T__conv_ldouble_long (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8650,7 +8605,6 @@ H5_GCC_DIAG_OFF(float-equal) H5T_CONV_Fx(LDOUBLE, LONG, long double, long, LONG_MIN, LONG_MAX); H5_GCC_DIAG_ON(float-equal) } -#endif /*H5T_CONV_INTERNAL_LDOUBLE_INTEGER*/ /*------------------------------------------------------------------------- @@ -8668,7 +8622,6 @@ H5_GCC_DIAG_ON(float-equal) * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_LDOUBLE_INTEGER herr_t H5T__conv_ldouble_ulong (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8679,7 +8632,6 @@ H5_GCC_DIAG_OFF(float-equal) H5T_CONV_Fx(LDOUBLE, ULONG, long double, unsigned long, 0, ULONG_MAX); H5_GCC_DIAG_ON(float-equal) } -#endif /* H5T_CONV_INTERNAL_LDOUBLE_INTEGER */ /*------------------------------------------------------------------------- @@ -8697,7 +8649,6 @@ H5_GCC_DIAG_ON(float-equal) * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_FP_LLONG herr_t H5T__conv_float_llong (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8708,7 +8659,6 @@ H5_GCC_DIAG_OFF(float-equal) H5T_CONV_Fx(FLOAT, LLONG, float, long long, LLONG_MIN, LLONG_MAX); H5_GCC_DIAG_ON(float-equal) } -#endif /* H5T_CONV_INTERNAL_FP_LLONG */ /*------------------------------------------------------------------------- @@ -8726,7 +8676,6 @@ H5_GCC_DIAG_ON(float-equal) * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_FP_ULLONG herr_t H5T__conv_float_ullong (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8735,7 +8684,6 @@ H5T__conv_float_ullong (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_Fx(FLOAT, ULLONG, float, unsigned long long, 0, ULLONG_MAX); } -#endif /*H5T_CONV_INTERNAL_FP_ULLONG*/ /*------------------------------------------------------------------------- @@ -8753,7 +8701,6 @@ H5T__conv_float_ullong (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_FP_LLONG herr_t H5T__conv_double_llong (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8764,7 +8711,6 @@ H5_GCC_DIAG_OFF(float-equal) H5T_CONV_Fx(DOUBLE, LLONG, double, long long, LLONG_MIN, LLONG_MAX); H5_GCC_DIAG_ON(float-equal) } -#endif /*H5T_CONV_INTERNAL_FP_LLONG*/ /*------------------------------------------------------------------------- @@ -8782,7 +8728,6 @@ H5_GCC_DIAG_ON(float-equal) * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_FP_ULLONG herr_t H5T__conv_double_ullong (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8791,7 +8736,6 @@ H5T__conv_double_ullong (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_Fx(DOUBLE, ULLONG, double, unsigned long long, 0, ULLONG_MAX); } -#endif /*H5T_CONV_INTERNAL_FP_ULLONG*/ /*------------------------------------------------------------------------- @@ -8809,7 +8753,6 @@ H5T__conv_double_ullong (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_LDOUBLE_LLONG herr_t H5T__conv_ldouble_llong (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8820,7 +8763,6 @@ H5_GCC_DIAG_OFF(float-equal) H5T_CONV_Fx(LDOUBLE, LLONG, long double, long long, LLONG_MIN, LLONG_MAX); H5_GCC_DIAG_ON(float-equal) } -#endif /*H5T_CONV_INTERNAL_LDOUBLE_LLONG*/ /*------------------------------------------------------------------------- @@ -8838,7 +8780,6 @@ H5_GCC_DIAG_ON(float-equal) * *------------------------------------------------------------------------- */ -#if H5T_CONV_INTERNAL_LDOUBLE_ULLONG herr_t H5T__conv_ldouble_ullong (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, @@ -8847,7 +8788,6 @@ H5T__conv_ldouble_ullong (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, { H5T_CONV_Fx(LDOUBLE, ULLONG, long double, unsigned long long, 0, ULLONG_MAX); } -#endif /*H5T_CONV_INTERNAL_LDOUBLE_ULLONG*/ /*------------------------------------------------------------------------- diff --git a/src/H5Tfields.c b/src/H5Tfields.c index 0e0d4e7..fb186fb 100644 --- a/src/H5Tfields.c +++ b/src/H5Tfields.c @@ -163,6 +163,7 @@ H5Tget_member_name(hid_t type_id, unsigned membno) char *ret_value; FUNC_ENTER_API(NULL) + H5TRACE2("*s", "iIu", type_id, membno); /* Check args */ if (NULL == (dt = (H5T_t *)H5I_object_verify(type_id,H5I_DATATYPE))) diff --git a/src/H5Tnative.c b/src/H5Tnative.c index 1a97f39..960a811 100644 --- a/src/H5Tnative.c +++ b/src/H5Tnative.c @@ -396,7 +396,7 @@ H5T_get_native_type(H5T_t *dtype, H5T_direction_t direction, size_t *struct_alig HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "cannot get member value") HDmemcpy(memb_value, tmp_memb_value, H5T_get_size(super_type)); - if(H5T_convert(tpath, super_type_id, nat_super_type_id, (size_t)1, (size_t)0, (size_t)0, memb_value, NULL, H5P_DEFAULT) < 0) + if(H5T_convert(tpath, super_type_id, nat_super_type_id, (size_t)1, (size_t)0, (size_t)0, memb_value, NULL, H5P_DATASET_XFER_DEFAULT) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "cannot get member value") if(H5T__enum_insert(new_type, memb_name, memb_value) < 0) diff --git a/src/H5Toh.c b/src/H5Toh.c index 096e655..ea1de21 100644 --- a/src/H5Toh.c +++ b/src/H5Toh.c @@ -142,7 +142,8 @@ H5O_dtype_open(const H5G_loc_t *obj_loc, hid_t UNUSED lapl_id, hid_t dxpl_id, hb /* Open the datatype */ if(NULL == (type = H5T_open(obj_loc, dxpl_id))) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTOPENOBJ, FAIL, "unable to open datatype") - + if(type->vol_obj != NULL) + printf("TRIGERRED\n"); /* Register an ID for the datatype */ if((ret_value = H5I_register(H5I_DATATYPE, type, app_ref)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register datatype") @@ -225,7 +226,7 @@ H5O_dtype_get_oloc(hid_t obj_id) if(NULL == (dt = (H5T_t *)H5I_object(obj_id))) HGOTO_ERROR(H5E_OHDR, H5E_BADATOM, NULL, "couldn't get object from ID") /* If this is a named datatype, get the plugin pointer to the datatype */ - type = (const H5T_t *)H5T_get_actual_type(dt); + type = (H5T_t *)H5T_get_actual_type(dt); /* Get the datatype's object header location */ if(NULL == (ret_value = H5T_oloc(type))) diff --git a/src/H5Topaque.c b/src/H5Topaque.c index d68e659..e93bf65 100644 --- a/src/H5Topaque.c +++ b/src/H5Topaque.c @@ -121,6 +121,7 @@ H5Tget_tag(hid_t type_id) char *ret_value; FUNC_ENTER_API(NULL) + H5TRACE1("*s", "i", type_id); /* Check args */ if (NULL == (dt = H5I_object_verify(type_id,H5I_DATATYPE))) diff --git a/src/H5Tpkg.h b/src/H5Tpkg.h index 11e3de1..6fade2a 100644 --- a/src/H5Tpkg.h +++ b/src/H5Tpkg.h @@ -111,123 +111,6 @@ /* (_not_ setting H5T_VISIT_SIMPLE and setting either H5T_VISIT_COMPLEX_FIRST or H5T_VISIT_COMPLEX_LAST will mean visiting all nodes _except_ "simple" "leafs" in the "tree" */ -/* Define an internal macro for converting between floating number(float and double) and floating number. - * All Cray compilers don't support denormalized floating values generating exception(?). */ -#if H5_CONVERT_DENORMAL_FLOAT -#define H5T_CONV_INTERNAL_FP_FP 1 -#endif /*H5_CONVERT_DENORMAL_FLOAT*/ - -/* Define an internal macro for converting between floating number(float and double) and long double. - * All Cray compilers don't support denormalized floating values generating exception(?). NEC doesn't - * support long double. */ -#if H5_SIZEOF_LONG_DOUBLE && H5_CONVERT_DENORMAL_FLOAT -#define H5T_CONV_INTERNAL_FP_LDOUBLE 1 -#endif /*H5_SIZEOF_LONG_DOUBLE && H5_CONVERT_DENORMAL_FLOAT*/ - -/* Define an internal macro for converting all integers to long double. SGI compilers give some - * incorrect conversions. */ -#if (H5_WANT_DATA_ACCURACY && H5_INTEGER_TO_LDOUBLE_ACCURATE) || (!H5_WANT_DATA_ACCURACY) -#define H5T_CONV_INTERNAL_INTEGER_LDOUBLE 1 -#endif - -/* Define an internal macro for converting unsigned long to float. - * Pathscale compiler on Sandia's Linux machine has some problem. - * 64-bit Solaris does different rounding. */ -#if (H5_WANT_DATA_ACCURACY && H5_ULONG_TO_FLOAT_ACCURATE && H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE) || \ - (!H5_WANT_DATA_ACCURACY) -#define H5T_CONV_INTERNAL_ULONG_FLT 1 -#endif - -/* Define an internal macro for converting unsigned (long) long to double. - * 64-bit Solaris does different rounding. */ -#if (H5_WANT_DATA_ACCURACY && H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE) || (!H5_WANT_DATA_ACCURACY) -#define H5T_CONV_INTERNAL_ULONG_DBL 1 -#endif - -/* Define an internal macro for converting unsigned long to long double. SGI compilers give some - * incorrect conversions. 64-bit Solaris does different rounding. */ -#if (H5_WANT_DATA_ACCURACY && H5_INTEGER_TO_LDOUBLE_ACCURATE && H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE) || \ - (!H5_WANT_DATA_ACCURACY) -#define H5T_CONV_INTERNAL_ULONG_LDOUBLE 1 -#endif - -/* Define an internal macro for converting long long to long double. Mac OS 10.4 gives some - * incorrect conversions. */ -#if (H5_WANT_DATA_ACCURACY && H5_INTEGER_TO_LDOUBLE_ACCURATE && defined(H5_LLONG_TO_LDOUBLE_CORRECT)) || \ - (!H5_WANT_DATA_ACCURACY) -#define H5T_CONV_INTERNAL_LLONG_LDOUBLE 1 -#endif - -/* Define an internal macro for converting unsigned long long to floating numbers. SGI compilers give - * some incorect conversion. 64-bit Solaris does different rounding. Windows Visual Studio 6 does - * not support unsigned long long. */ -#if (H5_WANT_DATA_ACCURACY && H5_ULLONG_TO_FP_CAST_WORKS && H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE) || \ - (!H5_WANT_DATA_ACCURACY && H5_ULLONG_TO_FP_CAST_WORKS) -#define H5T_CONV_INTERNAL_ULLONG_FP 1 -#endif - -/* Define an internal macro for converting unsigned long long to long double. SGI compilers give - * some incorect conversion. 64-bit Solaris does different rounding. Windows Visual Studio 6 does - * not support unsigned long long. For FreeBSD(sleipnir), the last 2 bytes of mantissa are lost when - * compiler tries to do the conversion. For Cygwin, compiler doesn't do rounding correctly. - * Mac OS 10.4 gives some incorrect result. */ -#if (H5_WANT_DATA_ACCURACY && H5_ULLONG_TO_FP_CAST_WORKS && H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE && \ - defined(H5_ULLONG_TO_LDOUBLE_PRECISION) && defined(H5_LLONG_TO_LDOUBLE_CORRECT)) || (!H5_WANT_DATA_ACCURACY && \ - H5_ULLONG_TO_FP_CAST_WORKS) -#define H5T_CONV_INTERNAL_ULLONG_LDOUBLE 1 -#endif - -/* Define an internal macro for converting long double to all integers. SGI compilers give some incorrect - * conversions. HP-UX 11.00 compiler generates floating exception. */ -#if (H5_WANT_DATA_ACCURACY && H5_LDOUBLE_TO_INTEGER_ACCURATE && H5_LDOUBLE_TO_INTEGER_WORKS) || \ - (!H5_WANT_DATA_ACCURACY && H5_LDOUBLE_TO_INTEGER_WORKS) -#define H5T_CONV_INTERNAL_LDOUBLE_INTEGER 1 -#endif - -/* Define an internal macro for converting long double to unsigned int. SGI compilers give some incorrect - * conversions. HP-UX 11.00 compiler generates floating exception. Some Intel compilers on some Linux - * give incorrect values. */ -#if (H5_WANT_DATA_ACCURACY && H5_LDOUBLE_TO_INTEGER_ACCURATE && H5_LDOUBLE_TO_UINT_ACCURATE && \ - H5_LDOUBLE_TO_INTEGER_WORKS) || (!H5_WANT_DATA_ACCURACY && H5_LDOUBLE_TO_INTEGER_WORKS) -#define H5T_CONV_INTERNAL_LDOUBLE_UINT 1 -#endif - -/* Define an internal macro for converting floating numbers to long long. The hard conversion on Windows - * .NET 2003 has a bug and gives wrong exception value. */ -#if (H5_WANT_DATA_ACCURACY && !defined(H5_HW_FP_TO_LLONG_NOT_WORKS)) || (!H5_WANT_DATA_ACCURACY) -#define H5T_CONV_INTERNAL_FP_LLONG 1 -#endif - -/* Define an internal macro for converting long double to long long. SGI compilers give some incorrect - * conversions. Mac OS 10.4 gives incorrect conversions. HP-UX 11.00 compiler generates floating exception. - * The hard conversion on Windows .NET 2003 has a bug and gives wrong exception value. */ -#if (H5_WANT_DATA_ACCURACY && !defined(H5_HW_FP_TO_LLONG_NOT_WORKS) && H5_LDOUBLE_TO_INTEGER_ACCURATE && \ - H5_LDOUBLE_TO_INTEGER_WORKS && defined(H5_LDOUBLE_TO_LLONG_ACCURATE)) || \ - (!H5_WANT_DATA_ACCURACY && !defined(H5_HW_FP_TO_LLONG_NOT_WORKS) && H5_LDOUBLE_TO_INTEGER_WORKS) -#define H5T_CONV_INTERNAL_LDOUBLE_LLONG 1 -#endif - -/* Define an internal macro for converting floating numbers to unsigned long long. PGI compiler does - * roundup when the source fraction part is greater than 0.5. HP-UX compilers set the maximal number - * for unsigned long long as 0x7fffffffffffffff during conversion. */ -#if (H5_WANT_DATA_ACCURACY && H5_FP_TO_ULLONG_ACCURATE && defined(H5_FP_TO_ULLONG_RIGHT_MAXIMUM)) || \ - (!H5_WANT_DATA_ACCURACY) -#define H5T_CONV_INTERNAL_FP_ULLONG 1 -#else -#define H5T_CONV_INTERNAL_FP_ULLONG 0 -#endif - -/* Define an internal macro for converting long double to unsigned long long. SGI compilers give some - * incorrect conversions. Mac OS 10.4 gives incorrect conversions. HP-UX 11.00 compiler generates - * floating exception. */ -#if (H5_WANT_DATA_ACCURACY && H5_LDOUBLE_TO_INTEGER_ACCURATE && H5_LDOUBLE_TO_INTEGER_WORKS && \ - H5_FP_TO_ULLONG_ACCURATE && defined(H5_FP_TO_ULLONG_RIGHT_MAXIMUM) && defined(H5_LDOUBLE_TO_LLONG_ACCURATE)) || \ - (!H5_WANT_DATA_ACCURACY && H5_LDOUBLE_TO_INTEGER_WORKS) -#define H5T_CONV_INTERNAL_LDOUBLE_ULLONG 1 -#else -#define H5T_CONV_INTERNAL_LDOUBLE_ULLONG 0 -#endif - /* Statistics about a conversion function */ struct H5T_stats_t { unsigned ncalls; /*num calls to conversion function */ diff --git a/src/H5Tprivate.h b/src/H5Tprivate.h index 21179d1..d39ae36 100644 --- a/src/H5Tprivate.h +++ b/src/H5Tprivate.h @@ -143,7 +143,7 @@ H5_DLL herr_t H5T_patch_file(H5T_t *dt, H5F_t *f); H5_DLL htri_t H5T_is_variable_str(const H5T_t *dt); H5_DLL H5T_t *H5T_construct_datatype(H5VL_object_t *dt_obj); H5_DLL H5VL_object_t *H5T_get_named_type(const H5T_t *dt); -H5_DLL H5T_t *H5T_get_actual_type(const H5T_t *dt); +H5_DLL H5T_t *H5T_get_actual_type(H5T_t *dt); /* Reference specific functions */ H5_DLL H5R_type_t H5T_get_ref_type(const H5T_t *dt); diff --git a/src/H5VLnative.c b/src/H5VLnative.c index 0d164a8..70515ab 100644 --- a/src/H5VLnative.c +++ b/src/H5VLnative.c @@ -512,7 +512,7 @@ H5VL_native_attr_create(void *obj, H5VL_loc_params_t loc_params, const char *att if(NULL == (dt = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a datatype") /* If this is a named datatype, get the plugin pointer to the datatype */ - type = (H5T_t *)H5T_get_actual_type(dt); + type = H5T_get_actual_type(dt); if(NULL == (space = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a data space") @@ -1089,7 +1089,7 @@ H5VM_array_offset_pre(unsigned n, const hsize_t *acc, const hsize_t *offset) HDassert(offset); /* Compute offset in array */ - for (i=(int)(n-1), ret_value=0; i>=0; --i) + for(i = (int)(n - 1), ret_value = 0; i >= 0; --i) ret_value += acc[i] * offset[i]; FUNC_LEAVE_NOAPI(ret_value) diff --git a/src/H5VMprivate.h b/src/H5VMprivate.h index 4706b5f..20821b2 100644 --- a/src/H5VMprivate.h +++ b/src/H5VMprivate.h @@ -357,26 +357,17 @@ H5VM_log2_gen(uint64_t n) unsigned r; /* r will be log2(n) */ register unsigned int t, tt, ttt; /* temporaries */ -#ifdef H5_BAD_LOG2_CODE_GENERATED - if(n > (uint64_t)0x7fffffffffffffff) - r = 63; - else { - n &= (uint64_t)0x7fffffffffffffff; -#endif /* H5_BAD_LOG2_CODE_GENERATED */ - if((ttt = (unsigned)(n >> 32))) - if((tt = (unsigned)(n >> 48))) - r = (t = (unsigned)(n >> 56)) ? 56 + (unsigned)LogTable256[t] : 48 + (unsigned)LogTable256[tt & 0xFF]; - else - r = (t = (unsigned)(n >> 40)) ? 40 + (unsigned)LogTable256[t] : 32 + (unsigned)LogTable256[ttt & 0xFF]; + if((ttt = (unsigned)(n >> 32))) + if((tt = (unsigned)(n >> 48))) + r = (t = (unsigned)(n >> 56)) ? 56 + (unsigned)LogTable256[t] : 48 + (unsigned)LogTable256[tt & 0xFF]; else - if((tt = (unsigned)(n >> 16))) - r = (t = (unsigned)(n >> 24)) ? 24 + (unsigned)LogTable256[t] : 16 + (unsigned)LogTable256[tt & 0xFF]; - else - /* Added 'uint8_t' cast to pacify PGCC compiler */ - r = (t = (unsigned)(n >> 8)) ? 8 + (unsigned)LogTable256[t] : (unsigned)LogTable256[(uint8_t)n]; -#ifdef H5_BAD_LOG2_CODE_GENERATED - } /* end else */ -#endif /* H5_BAD_LOG2_CODE_GENERATED */ + r = (t = (unsigned)(n >> 40)) ? 40 + (unsigned)LogTable256[t] : 32 + (unsigned)LogTable256[ttt & 0xFF]; + else + if((tt = (unsigned)(n >> 16))) + r = (t = (unsigned)(n >> 24)) ? 24 + (unsigned)LogTable256[t] : 16 + (unsigned)LogTable256[tt & 0xFF]; + else + /* Added 'uint8_t' cast to pacify PGCC compiler */ + r = (t = (unsigned)(n >> 8)) ? 8 + (unsigned)LogTable256[t] : (unsigned)LogTable256[(uint8_t)n]; return(r); } /* H5VM_log2_gen() */ @@ -93,35 +93,28 @@ H5Z_init_interface (void) FUNC_ENTER_NOAPI_NOINIT + /* Internal filters */ + if (H5Z_register (H5Z_SHUFFLE)<0) + HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register shuffle filter") + if (H5Z_register (H5Z_FLETCHER32)<0) + HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register fletcher32 filter") + if (H5Z_register (H5Z_NBIT)<0) + HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register nbit filter") + if (H5Z_register (H5Z_SCALEOFFSET)<0) + HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register scaleoffset filter") + + /* External filters */ #ifdef H5_HAVE_FILTER_DEFLATE if (H5Z_register (H5Z_DEFLATE)<0) - HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register deflate filter") + HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register deflate filter") #endif /* H5_HAVE_FILTER_DEFLATE */ -#ifdef H5_HAVE_FILTER_SHUFFLE - if (H5Z_register (H5Z_SHUFFLE)<0) - HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register shuffle filter") -#endif /* H5_HAVE_FILTER_SHUFFLE */ -#ifdef H5_HAVE_FILTER_FLETCHER32 - if (H5Z_register (H5Z_FLETCHER32)<0) - HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register fletcher32 filter") -#endif /* H5_HAVE_FILTER_FLETCHER32 */ #ifdef H5_HAVE_FILTER_SZIP H5Z_SZIP->encoder_present = SZ_encoder_enabled(); if (H5Z_register (H5Z_SZIP)<0) - HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register szip filter") + HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register szip filter") #endif /* H5_HAVE_FILTER_SZIP */ -#ifdef H5_HAVE_FILTER_NBIT - if (H5Z_register (H5Z_NBIT)<0) - HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register nbit filter") -#endif /* H5_HAVE_FILTER_NBIT */ -#ifdef H5_HAVE_FILTER_SCALEOFFSET - if (H5Z_register (H5Z_SCALEOFFSET)<0) - HGOTO_ERROR (H5E_PLINE, H5E_CANTINIT, FAIL, "unable to register scaleoffset filter") -#endif /* H5_HAVE_FILTER_SCALEOFFSET */ -#if (defined H5_HAVE_FILTER_DEFLATE | defined H5_HAVE_FILTER_FLETCHER32 | defined H5_HAVE_FILTER_SHUFFLE | defined H5_HAVE_FILTER_SZIP | defined H5_HAVE_FILTER_NBIT | defined H5_HAVE_FILTER_SCALEOFFSET) done: -#endif /* (defined H5_HAVE_FILTER_DEFLATE | defined H5_HAVE_FILTER_FLETCHER32 | defined H5_HAVE_FILTER_SHUFFLE | defined H5_HAVE_FILTER_SZIP | defined H5_HAVE_FILTER_NBIT | defined H5_HAVE_FILTER_SCALEOFFSET) */ FUNC_LEAVE_NOAPI(ret_value) } diff --git a/src/H5Zfletcher32.c b/src/H5Zfletcher32.c index 8d2643d..2ee69d1 100644 --- a/src/H5Zfletcher32.c +++ b/src/H5Zfletcher32.c @@ -27,8 +27,6 @@ #include "H5MMprivate.h" /* Memory management */ #include "H5Zpkg.h" /* Data filters */ -#ifdef H5_HAVE_FILTER_FLETCHER32 - /* Local function prototypes */ static size_t H5Z_filter_fletcher32 (unsigned flags, size_t cd_nelmts, const unsigned cd_values[], size_t nbytes, size_t *buf_size, void **buf); @@ -139,9 +137,11 @@ H5Z_filter_fletcher32 (unsigned flags, size_t UNUSED cd_nelmts, const unsigned U /* Compute checksum (can't fail) */ fletcher = H5_checksum_fletcher32(src, nbytes); - if (NULL==(dst=outbuf=H5MM_malloc(nbytes+FLETCHER_LEN))) + if (NULL == (outbuf = H5MM_malloc(nbytes + FLETCHER_LEN))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, 0, "unable to allocate Fletcher32 checksum destination buffer") + dst = (unsigned char *) outbuf; + /* Copy raw data */ HDmemcpy((void*)dst, (void*)(*buf), nbytes); @@ -164,5 +164,4 @@ done: H5MM_xfree(outbuf); FUNC_LEAVE_NOAPI(ret_value) } -#endif /* H5_HAVE_FILTER_FLETCHER32 */ diff --git a/src/H5Znbit.c b/src/H5Znbit.c index ebb534b..9506ace 100644 --- a/src/H5Znbit.c +++ b/src/H5Znbit.c @@ -25,8 +25,6 @@ #include "H5Tprivate.h" /* Datatypes */ #include "H5Zpkg.h" /* Data filters */ -#ifdef H5_HAVE_FILTER_NBIT - /* Struct of parameters needed for compressing/decompressing * one nbit atomic datatype: integer or floating-point */ @@ -1424,4 +1422,4 @@ static void H5Z_nbit_compress(unsigned char *data, unsigned d_nelmts, unsigned c * the last byte, increment the value by 1. */ *buffer_size = new_size + 1; } -#endif /* H5_HAVE_FILTER_NBIT */ + diff --git a/src/H5Zpkg.h b/src/H5Zpkg.h index b0df856..e2cec89 100644 --- a/src/H5Zpkg.h +++ b/src/H5Zpkg.h @@ -23,48 +23,35 @@ /* Include private header file */ #include "H5Zprivate.h" /* Filter functions */ +/********************/ +/* Internal filters */ +/********************/ -#ifdef H5_HAVE_FILTER_DEFLATE -/* - * Deflate filter - */ -H5_DLLVAR const H5Z_class2_t H5Z_DEFLATE[1]; -#endif /* H5_HAVE_FILTER_DEFLATE */ - -#ifdef H5_HAVE_FILTER_SHUFFLE -/* - * Shuffle filter - */ +/* Shuffle filter */ H5_DLLVAR const H5Z_class2_t H5Z_SHUFFLE[1]; -#endif /* H5_HAVE_FILTER_SHUFFLE */ -#ifdef H5_HAVE_FILTER_FLETCHER32 -/* - * Fletcher32 filter - */ +/* Fletcher32 filter */ H5_DLLVAR const H5Z_class2_t H5Z_FLETCHER32[1]; -#endif /* H5_HAVE_FILTER_FLETCHER32 */ -#ifdef H5_HAVE_FILTER_SZIP -/* - * szip filter - */ -H5_DLLVAR H5Z_class2_t H5Z_SZIP[1]; -#endif /* H5_HAVE_FILTER_SZIP */ - -#ifdef H5_HAVE_FILTER_NBIT -/* - * nbit filter - */ +/* n-bit filter */ H5_DLLVAR H5Z_class2_t H5Z_NBIT[1]; -#endif /* H5_HAVE_FILTER_NBIT */ -#ifdef H5_HAVE_FILTER_SCALEOFFSET -/* - * scaleoffset filter - */ +/* Scale/offset filter */ H5_DLLVAR H5Z_class2_t H5Z_SCALEOFFSET[1]; -#endif /* H5_HAVE_FILTER_SCALEOFFSET */ + +/********************/ +/* External filters */ +/********************/ + +/* Deflate filter */ +#ifdef H5_HAVE_FILTER_DEFLATE +H5_DLLVAR const H5Z_class2_t H5Z_DEFLATE[1]; +#endif /* H5_HAVE_FILTER_DEFLATE */ + +/* szip filter */ +#ifdef H5_HAVE_FILTER_SZIP +H5_DLLVAR H5Z_class2_t H5Z_SZIP[1]; +#endif /* H5_HAVE_FILTER_SZIP */ #endif /* _H5Zpkg_H */ diff --git a/src/H5Zscaleoffset.c b/src/H5Zscaleoffset.c index 83864b9..38e2986 100644 --- a/src/H5Zscaleoffset.c +++ b/src/H5Zscaleoffset.c @@ -26,8 +26,6 @@ #include "H5Tprivate.h" /* Datatypes */ #include "H5Zpkg.h" /* Data filters */ -#ifdef H5_HAVE_FILTER_SCALEOFFSET - /* Struct of parameters needed for compressing/decompressing one atomic datatype */ typedef struct { size_t size; /* datatype size */ @@ -1722,5 +1720,4 @@ H5Z_scaleoffset_compress(unsigned char *data, unsigned d_nelmts, for(i = 0; i < d_nelmts; i++) H5Z_scaleoffset_compress_one_atomic(data, i * p.size, buffer, &j, &buf_len, p); } -#endif /* H5_HAVE_FILTER_SCALEOFFSET */ diff --git a/src/H5Zshuffle.c b/src/H5Zshuffle.c index 4a67839..4138bf1 100644 --- a/src/H5Zshuffle.c +++ b/src/H5Zshuffle.c @@ -24,8 +24,6 @@ #include "H5Tprivate.h" /* Datatypes */ #include "H5Zpkg.h" /* Data filters */ -#ifdef H5_HAVE_FILTER_SHUFFLE - /* Local function prototypes */ static herr_t H5Z_set_local_shuffle(hid_t dcpl_id, hid_t type_id, hid_t space_id); static size_t H5Z_filter_shuffle(unsigned flags, size_t cd_nelmts, @@ -291,5 +289,4 @@ H5Z_filter_shuffle(unsigned flags, size_t cd_nelmts, const unsigned cd_values[], done: FUNC_LEAVE_NOAPI(ret_value) } -#endif /*H5_HAVE_FILTER_SHUFFLE */ diff --git a/src/H5Ztrans.c b/src/H5Ztrans.c index 1b8c096..7a94487 100644 --- a/src/H5Ztrans.c +++ b/src/H5Ztrans.c @@ -160,35 +160,6 @@ static void H5Z_print(H5Z_node *tree, FILE *stream); HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Unexpected type conversion operation") \ } -/* Due to the undefined nature of embedding macros/conditionals within macros, we employ - * this clever little hack. We always compile in the code for the type conversion, even if - * it isn't supported in the compiler. To avoid errors, we define ULLONG_TO_FP_XFORM_TYPE_OP_ERROR on - * unsupported compilers, which will cause the code to execute HGOTO_ERROR and skip the code - * that does the actual conversion */ - - -#ifndef H5_ULLONG_TO_FP_CAST_WORKS -#define H5Z_XFORM_ULL_DO_OP1(RESL,RESR,TYPE,OP,SIZE) \ -{ \ - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Cannot convert from unsigned long long to double: required for data transform") \ -} -#else -#define H5Z_XFORM_ULL_DO_OP1(RESL,RESR,TYPE,OP,SIZE) \ - H5Z_XFORM_DO_OP1(RESL,RESR,TYPE,OP,SIZE) -#endif - -/* Windows Intel 8.1 compiler has error converting long long to double. - * Hard code it in. - */ -#ifndef H5_LLONG_TO_FP_CAST_WORKS -#define H5Z_XFORM_LL_DO_OP1(RESL,RESR,TYPE,OP,SIZE) \ -{ \ - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Cannot convert from long long to double: required for data transform") \ -} -#else -#define H5Z_XFORM_LL_DO_OP1(RESL,RESR,TYPE,OP,SIZE) \ - H5Z_XFORM_DO_OP1(RESL,RESR,TYPE,OP,SIZE) -#endif #if H5_SIZEOF_LONG_DOUBLE !=0 #define H5Z_XFORM_TYPE_OP(RESL,RESR,TYPE,OP,SIZE) \ { \ @@ -211,9 +182,9 @@ static void H5Z_print(H5Z_node *tree, FILE *stream); else if((TYPE) == H5T_NATIVE_ULONG) \ H5Z_XFORM_DO_OP1((RESL), (RESR), unsigned long, OP, (SIZE)) \ else if((TYPE) == H5T_NATIVE_LLONG) \ - H5Z_XFORM_LL_DO_OP1((RESL), (RESR), long long, OP, (SIZE)) \ + H5Z_XFORM_DO_OP1((RESL), (RESR), long long, OP, (SIZE)) \ else if((TYPE) == H5T_NATIVE_ULLONG) \ - H5Z_XFORM_ULL_DO_OP1((RESL), (RESR), unsigned long long, OP, (SIZE)) \ + H5Z_XFORM_DO_OP1((RESL), (RESR), unsigned long long, OP, (SIZE)) \ else if((TYPE) == H5T_NATIVE_FLOAT) \ H5Z_XFORM_DO_OP1((RESL), (RESR), float, OP, (SIZE)) \ else if((TYPE) == H5T_NATIVE_DOUBLE) \ @@ -243,9 +214,9 @@ static void H5Z_print(H5Z_node *tree, FILE *stream); else if((TYPE) == H5T_NATIVE_ULONG) \ H5Z_XFORM_DO_OP1((RESL), (RESR), unsigned long, OP, (SIZE)) \ else if((TYPE) == H5T_NATIVE_LLONG) \ - H5Z_XFORM_LL_DO_OP1((RESL), (RESR), long long, OP, (SIZE)) \ + H5Z_XFORM_DO_OP1((RESL), (RESR), long long, OP, (SIZE)) \ else if((TYPE) == H5T_NATIVE_ULLONG) \ - H5Z_XFORM_ULL_DO_OP1((RESL), (RESR), unsigned long long, OP, (SIZE)) \ + H5Z_XFORM_DO_OP1((RESL), (RESR), unsigned long long, OP, (SIZE)) \ else if((TYPE) == H5T_NATIVE_FLOAT) \ H5Z_XFORM_DO_OP1((RESL), (RESR), float, OP, (SIZE)) \ else if((TYPE) == H5T_NATIVE_DOUBLE) \ diff --git a/src/H5api_adpt.h b/src/H5api_adpt.h index 845a9a0..7602310 100644 --- a/src/H5api_adpt.h +++ b/src/H5api_adpt.h @@ -21,59 +21,16 @@ #ifndef H5API_ADPT_H #define H5API_ADPT_H +#ifdef __cplusplus +#define __attribute__(X) /*void*/ +#endif /* __cplusplus */ +#ifndef H5_HAVE_ATTRIBUTE +#define __attribute__(X) /*void*/ +#endif /* H5_HAVE_ATTRIBUTE */ + /* This will only be defined if HDF5 was built with CMake */ #ifdef H5_BUILT_AS_DYNAMIC_LIB -#if defined (hdf5_EXPORTS) - #define _HDF5DLL_ -#else - #define _HDF5USEDLL_ -#endif - -#if defined (hdf5_test_EXPORTS) - #define _HDF5TESTDLL_ -#else - #define _HDF5TESTUSEDLL_ -#endif - -#if defined (hdf5_tools_EXPORTS) - #define _HDF5TOOLSDLL_ -#else - #define _HDF5TOOLSUSEDLL_ -#endif - -#if defined (hdf5_cpp_EXPORTS) - #define HDF5_CPPDLL_EXPORTS -#else - #define HDF5CPP_USEDLL -#endif - -#if defined (hdf5_hl_EXPORTS) - #define _HDF5_HLDLL_EXPORTS_ -#else - #define _HDF5USEHLDLL_ -#endif - -#if defined (hdf5_hl_cpp_EXPORTS) - #define HDF5_HL_CPPDLL_EXPORTS -#else - #define HDF5USE_HLCPPDLL -#endif - -#if defined (hdf5_f90cstub_EXPORTS) - #define HDF5FORT_CSTUB_DLL_EXPORTS -#else - #define HDF5FORT_CSTUB_USEDLL -#endif - -#if defined (hdf5_test_f90cstub_EXPORTS) - #define HDF5FORTTEST_CSTUB_DLL_EXPORTS -#endif - -#if defined (hdf5_hl_f90cstub_EXPORTS) - #define HDF5_HL_F90CSTUBDLL_EXPORTS -#endif - #if defined(hdf5_EXPORTS) #if defined (_MSC_VER) /* MSVC Compiler Case */ #define H5_DLL __declspec(dllexport) @@ -281,144 +238,25 @@ #define HDF5_HL_F90CSTUBDLLVAR extern #endif /* HDF5_HL_F90CSTUBDLL */ -#elif defined(H5_BUILT_AS_STATIC_LIB) +#else #define H5_DLL - #define H5_HLDLL - #define H5_HLCPPDLL - #define HDF5_HL_F90CSTUBDLL #define H5_DLLVAR extern - #define H5_DLLCPP #define H5TEST_DLL #define H5TEST_DLLVAR extern #define H5TOOLS_DLL #define H5TOOLS_DLLVAR extern + #define H5_DLLCPP + #define H5_DLLCPPVAR extern + #define H5_HLDLL + #define H5_HLDLLVAR extern + #define H5_HLCPPDLL + #define H5_HLCPPDLLVAR extern #define H5_FCDLL #define H5_FCDLLVAR extern #define H5_FCTESTDLL #define H5_FCTESTDLLVAR extern - -#else -/* This is the original HDFGroup defined preprocessor code which should still work - * with the VS projects that are maintained by "The HDF Group" - * The Visual Studio project files will not be supported in the next major release of 1.10. - */ - -#if defined(H5_HAVE_WIN32_API) - -#if defined(_HDF5DLL_) -#pragma warning(disable: 4273) /* Disable the dll linkage warnings */ -#define H5_DLL __declspec(dllexport) -#define H5_DLLVAR extern __declspec(dllexport) -#elif defined(_HDF5USEDLL_) -#define H5_DLL __declspec(dllimport) -#define H5_DLLVAR __declspec(dllimport) -#else -#define H5_DLL -#define H5_DLLVAR extern -#endif /* _HDF5DLL_ */ - -#if defined(_HDF5TESTDLL_) -#pragma warning(disable: 4273) /* Disable the dll linkage warnings */ -#define H5TEST_DLL __declspec(dllexport) -#define H5TEST_DLLVAR extern __declspec(dllexport) -#elif defined(_HDF5TESTUSEDLL_) -#define H5TEST_DLL __declspec(dllimport) -#define H5TEST_DLLVAR __declspec(dllimport) -#else -#define H5TEST_DLL -#define H5TEST_DLLVAR extern -#endif /* _HDF5TESTDLL_ */ - -#if defined(_HDF5TOOLSDLL_) -#pragma warning(disable: 4273) /* Disable the dll linkage warnings */ -#define H5TOOLS_DLL __declspec(dllexport) -#define H5TOOLS_DLLVAR extern __declspec(dllexport) -#elif defined(_HDF5TOOLSUSEDLL_) -#define H5TOOLS_DLL __declspec(dllimport) -#define H5TOOLS_DLLVAR __declspec(dllimport) -#else -#define H5TOOLS_DLL -#define H5TOOLS_DLLVAR extern -#endif /* _HDF5TOOLSDLL_ */ - -#if defined(_HDF5_HLDLL_EXPORTS_) -#pragma warning(disable: 4273) /* Disable the dll linkage warnings */ -#define H5_HLDLL __declspec(dllexport) -#elif defined(_HDF5USEHLDLL_) -#define H5_HLDLL __declspec(dllimport) -#else -#define H5_HLDLL -#endif /* _HDF5_HLDLL_EXPORTS */ - -#if defined(HDF5_HL_CPPDLL_EXPORTS) -#pragma warning(disable: 4273) /* Disable the dll linkage warnings */ -#define H5_HLCPPDLL __declspec(dllexport) -#elif defined(HDF5USE_HLCPPDLL) -#define H5_HLCPPDLL __declspec(dllimport) -#else -#define H5_HLCPPDLL -#endif /*HDF5_HL_CPPDLL_EXPORTS*/ - -#if defined(HDF5_HL_F90CSTUBDLL_EXPORTS) -#pragma warning(disable: 4273) /* Disable the dll linkage warnings */ -#define HDF5_HL_F90CSTUBDLL __declspec(dllexport) -#elif defined(HDF5USE_HLF90CSTUBDLL) -#define HDF5_HL_F90CSTUBDLL __declspec(dllimport) -#else -#define HDF5_HL_F90CSTUBDLL -#endif /*HDF5_HL_F90CSTUBDLL_EXPORTS*/ - - -#if defined(HDF5FORT_CSTUB_DLL_EXPORTS) -#pragma warning(disable: 4273) /* Disable the dll linkage warnings */ -#define H5_FCDLL __declspec(dllexport) -#define H5_FCDLLVAR extern __declspec(dllexport) -#elif defined(HDF5FORT_CSTUB_USEDLL) -#define H5_FCDLL __declspec(dllimport) -#define H5_FCDLLVAR __declspec(dllimport) -#else -#define H5_FCDLL -#define H5_FCDLLVAR extern -#endif /* _HDF5_FORTRANDLL_EXPORTS_ */ - -#if defined(HDF5FORTTEST_CSTUB_DLL_EXPORTS) -#pragma warning(disable: 4273) /* Disable the dll linkage warnings */ -#define H5_FCTESTDLL __declspec(dllexport) -#define H5_FCTESTDLLVAR extern __declspec(dllexport) -#elif defined(HDF5FORTTEST_CSTUB_USEDLL) -#define H5_FCTESTDLL __declspec(dllimport) -#define H5_FCTESTDLLVAR __declspec(dllimport) -#else -#define H5_FCTESTDLL -#define H5_FCTESTDLLVAR extern -#endif /* _HDF5_FORTRANDLL_EXPORTS_ */ - -/* Added to export or to import C++ APIs - BMR (02-15-2002) */ -#if defined(HDF5_CPPDLL_EXPORTS) /* this name is generated at creation */ -#define H5_DLLCPP __declspec(dllexport) -#elif defined(HDF5CPP_USEDLL) -#define H5_DLLCPP __declspec(dllimport) -#else -#define H5_DLLCPP -#endif /* HDF5_CPPDLL_EXPORTS */ - -#else /*H5_HAVE_WIN32_API*/ -#define H5_DLL -#define H5_HLDLL -#define H5_HLCPPDLL -#define HDF5_HL_F90CSTUBDLL -#define H5_DLLVAR extern -#define H5_DLLCPP -#define H5TEST_DLL -#define H5TEST_DLLVAR extern -#define H5TOOLS_DLL -#define H5TOOLS_DLLVAR extern -#define H5_FCDLL -#define H5_FCDLLVAR extern -#define H5_FCTESTDLL -#define H5_FCTESTDLLVAR extern -#endif /*H5_HAVE_WIN32_API*/ + #define HDF5_HL_F90CSTUBDLL + #define HDF5_HL_F90CSTUBDLLVAR extern +#endif /* H5_BUILT_AS_DYNAMIC_LIB */ #endif /* H5API_ADPT_H */ - -#endif /* */ diff --git a/src/H5config.h.in b/src/H5config.h.in index cc8a59c..c089cd3 100644 --- a/src/H5config.h.in +++ b/src/H5config.h.in @@ -3,26 +3,16 @@ /* Define if building universal (internal helper macro) */ #undef AC_APPLE_UNIVERSAL_BUILD -/* Define if your system generates wrong code for log2 routine. */ -#undef BAD_LOG2_CODE_GENERATED - /* Define if the memory buffers being written to disk should be cleared before writing. */ #undef CLEAR_MEMORY -/* Define if your system can handle converting denormalized floating-point - values. */ -#undef CONVERT_DENORMAL_FLOAT - /* Define if C++ compiler recognizes offsetof */ #undef CXX_HAVE_OFFSETOF /* Define the default plugins path to compile */ #undef DEFAULT_PLUGINDIR -/* Define the default virtual file driver to compile */ -#undef DEFAULT_VFD - /* Define if `dev_t' is a scalar */ #undef DEV_T_IS_SCALAR @@ -40,21 +30,6 @@ /* As FC_FUNC, but for C identifiers containing underscores. */ #undef FC_FUNC_ -/* Define if your system can handle overflow converting floating-point to - integer values. */ -#undef FP_TO_INTEGER_OVERFLOW_WORKS - -/* Define if your system roundup accurately converting floating-point to - unsigned long long values. */ -#undef FP_TO_ULLONG_ACCURATE - -/* Define if your system has right maximum convert floating-point to unsigned - long long values. */ -#undef FP_TO_ULLONG_RIGHT_MAXIMUM - -/* Define if gettimeofday() populates the tz pointer passed in */ -#undef GETTIMEOFDAY_GIVES_TZ - /* Define to 1 if you have the `alarm' function. */ #undef HAVE_ALARM @@ -64,9 +39,6 @@ /* Define if the __attribute__(()) extension is present */ #undef HAVE_ATTRIBUTE -/* Define to 1 if you have the `BSDgettimeofday' function. */ -#undef HAVE_BSDGETTIMEOFDAY - /* Define if the compiler understands C99 designated initialization of structs and unions */ #undef HAVE_C99_DESIGNATED_INITIALIZER @@ -83,14 +55,10 @@ /* Define if Darwin or Mac OS X */ #undef HAVE_DARWIN -/* Define to 1 if you have the declaration of `tzname', and to 0 if you don't. - */ -#undef HAVE_DECL_TZNAME - /* Define to 1 if you have the `difftime' function. */ #undef HAVE_DIFFTIME -/* Define if the direct I/O virtual file driver should be compiled */ +/* Define if the direct I/O virtual file driver (VFD) should be compiled */ #undef HAVE_DIRECT /* Define to 1 if you have the <dirent.h> header file. */ @@ -111,18 +79,6 @@ /* Define if support for deflate (zlib) filter is enabled */ #undef HAVE_FILTER_DEFLATE -/* Define if support for Fletcher32 checksum is enabled */ -#undef HAVE_FILTER_FLETCHER32 - -/* Define if support for nbit filter is enabled */ -#undef HAVE_FILTER_NBIT - -/* Define if support for scaleoffset filter is enabled */ -#undef HAVE_FILTER_SCALEOFFSET - -/* Define if support for shuffle filter is enabled */ -#undef HAVE_FILTER_SHUFFLE - /* Define if support for szip filter is enabled */ #undef HAVE_FILTER_SZIP @@ -313,12 +269,6 @@ /* Define if `struct text_info' is defined */ #undef HAVE_STRUCT_TEXT_INFO -/* Define if `struct timezone' is defined */ -#undef HAVE_STRUCT_TIMEZONE - -/* Define to 1 if `tm_zone' is a member of `struct tm'. */ -#undef HAVE_STRUCT_TM_TM_ZONE - /* Define if `struct videoconfig' is defined */ #undef HAVE_STRUCT_VIDEOCONFIG @@ -379,14 +329,6 @@ /* Define if `tm_gmtoff' is a member of `struct tm' */ #undef HAVE_TM_GMTOFF -/* Define to 1 if your `struct tm' has `tm_zone'. Deprecated, use - `HAVE_STRUCT_TM_TM_ZONE' instead. */ -#undef HAVE_TM_ZONE - -/* Define to 1 if you don't have `tm_zone' but do have the external array - `tzname'. */ -#undef HAVE_TZNAME - /* Define to 1 if you have the <unistd.h> header file. */ #undef HAVE_UNISTD_H @@ -414,45 +356,13 @@ /* Define to 1 if you have the `_scrsize' function. */ #undef HAVE__SCRSIZE -/* Define if `__tm_gmtoff' is a member of `struct tm' */ -#undef HAVE___TM_GMTOFF - -/* Define if your system can't handle converting floating-point values to long - long. */ -#undef HW_FP_TO_LLONG_NOT_WORKS - /* Define if HDF5's high-level library headers should be included in hdf5.h */ #undef INCLUDE_HL -/* Define if your system can accurately convert from integers to long double - values. */ -#undef INTEGER_TO_LDOUBLE_ACCURATE - -/* Define if your system can convert long double to integers accurately. */ -#undef LDOUBLE_TO_INTEGER_ACCURATE - -/* Define if your system can convert from long double to integer values. */ -#undef LDOUBLE_TO_INTEGER_WORKS - -/* Define if your system can convert long double to (unsigned) long long - values correctly. */ -#undef LDOUBLE_TO_LLONG_ACCURATE - /* Define if your system converts long double to (unsigned) long values with special algorithm. */ #undef LDOUBLE_TO_LONG_SPECIAL -/* Define if your system can convert long double to unsigned int values - correctly. */ -#undef LDOUBLE_TO_UINT_ACCURATE - -/* Define if your system can compile long long to floating-point casts. */ -#undef LLONG_TO_FP_CAST_WORKS - -/* Define if your system can convert (unsigned) long long to long double - values correctly. */ -#undef LLONG_TO_LDOUBLE_CORRECT - /* Define if your system can convert (unsigned) long to long double values with special algorithm. */ #undef LONG_TO_LDOUBLE_SPECIAL @@ -470,9 +380,6 @@ /* Define if deprecated public API symbols are disabled */ #undef NO_DEPRECATED_SYMBOLS -/* Define if shared writing must be disabled (CodeWarrior only) */ -#undef NO_SHARED_WRITING - /* Name of package */ #undef PACKAGE @@ -627,25 +534,6 @@ /* Define to 1 if you can safely include both <sys/time.h> and <time.h>. */ #undef TIME_WITH_SYS_TIME -/* Define to 1 if your <sys/time.h> declares `struct tm'. */ -#undef TM_IN_SYS_TIME - -/* Define if your system can compile unsigned long long to floating-point - casts. */ -#undef ULLONG_TO_FP_CAST_WORKS - -/* Define if your system can convert unsigned long long to long double with - correct precision. */ -#undef ULLONG_TO_LDOUBLE_PRECISION - -/* Define if your system accurately converting unsigned long to float values. - */ -#undef ULONG_TO_FLOAT_ACCURATE - -/* Define if your system can accurately convert unsigned (long) long values to - floating-point values. */ -#undef ULONG_TO_FP_BOTTOM_BIT_ACCURATE - /* Define using v1.6 public API symbols by default */ #undef USE_16_API_DEFAULT @@ -657,13 +545,6 @@ /* Version number of package */ #undef VERSION -/* Define if vsnprintf() returns the correct value for formatted strings that - don't fit into size allowed */ -#undef VSNPRINTF_WORKS - -/* Data accuracy is prefered to speed during data conversions */ -#undef WANT_DATA_ACCURACY - /* Check exception handling functions during data conversions */ #undef WANT_DCONV_EXCEPTION diff --git a/src/H5detect.c b/src/H5detect.c index aed7514..fc0570c 100644 --- a/src/H5detect.c +++ b/src/H5detect.c @@ -323,7 +323,7 @@ precision (detected_t *d) * steps). This is necessary because padding bits can change arbitrarily \ * and interfere with detection of the various properties below unless we \ * know to ignore them. */ \ - _v1 = 4.0; \ + _v1 = (TYPE)4.0L; \ HDmemcpy(_buf1, (const void *)&_v1, sizeof(TYPE)); \ for(_i = 0; _i < (int)sizeof(TYPE); _i++) \ for(_byte_mask = (unsigned char)1; _byte_mask; _byte_mask <<= 1) { \ @@ -335,10 +335,10 @@ precision (detected_t *d) } /* end for */ \ \ /* Byte Order */ \ - for(_i = 0, _v1 = 0.0, _v2 = 1.0; _i < (int)sizeof(TYPE); _i++) { \ + for(_i = 0, _v1 = (TYPE)0.0L, _v2 = (TYPE)1.0L; _i < (int)sizeof(TYPE); _i++) { \ _v3 = _v1; \ _v1 += _v2; \ - _v2 /= 256.0; \ + _v2 /= (TYPE)256.0L; \ HDmemcpy(_buf1, (const void *)&_v1, sizeof(TYPE)); \ HDmemcpy(_buf3, (const void *)&_v3, sizeof(TYPE)); \ _j = byte_cmp(sizeof(TYPE), _buf3, _buf1, _pad_mask); \ @@ -353,20 +353,20 @@ precision (detected_t *d) INFO.is_vax = TRUE; \ \ /* Implicit mantissa bit */ \ - _v1 = 0.5; \ - _v2 = 1.0; \ + _v1 = (TYPE)0.5L; \ + _v2 = (TYPE)1.0L; \ INFO.imp = imp_bit (sizeof(TYPE), INFO.perm, &_v1, &_v2, _pad_mask); \ \ /* Sign bit */ \ - _v1 = 1.0; \ - _v2 = -1.0; \ + _v1 = (TYPE)1.0L; \ + _v2 = (TYPE)-1.0L; \ INFO.sign = bit_cmp (sizeof(TYPE), INFO.perm, &_v1, &_v2, _pad_mask); \ \ /* Mantissa */ \ INFO.mpos = 0; \ \ - _v1 = 1.0; \ - _v2 = 1.5; \ + _v1 = (TYPE)1.0L; \ + _v2 = (TYPE)1.5L; \ INFO.msize = bit_cmp (sizeof(TYPE), INFO.perm, &_v1, &_v2, _pad_mask); \ INFO.msize += 1 + (INFO.imp?0:1) - INFO.mpos; \ \ @@ -375,7 +375,7 @@ precision (detected_t *d) \ INFO.esize = INFO.sign - INFO.epos; \ \ - _v1 = 1.0; \ + _v1 = (TYPE)1.0L; \ INFO.bias = find_bias (INFO.epos, INFO.esize, INFO.perm, &_v1); \ precision (&(INFO)); \ ALIGNMENT(TYPE, INFO); \ @@ -858,6 +858,7 @@ done:\n\ printf("/* signal_handlers tested: %d times */\n", signal_handler_tested_g); printf("/* sigbus_handler called: %d times */\n", sigbus_handler_called_g); printf("/* sigsegv_handler called: %d times */\n", sigsegv_handler_called_g); + printf("/* sigill_handler called: %d times */\n", sigill_handler_called_g); } /* end print_results() */ @@ -1381,8 +1382,8 @@ detect_C89_integers(void) static void detect_C89_floats(void) { - DETECT_F(float, FLOAT, d_g[nd_g]); nd_g++; - DETECT_F(double, DOUBLE, d_g[nd_g]); nd_g++; + DETECT_F(float, FLOAT, d_g[nd_g]); nd_g++; + DETECT_F(double, DOUBLE, d_g[nd_g]); nd_g++; } @@ -1750,13 +1751,17 @@ main(void) #if defined(H5SETJMP) && defined(H5_HAVE_SIGNAL) /* verify the SIGBUS and SIGSEGV handlers work properly */ - if (verify_signal_handlers (SIGBUS, sigbus_handler) != 0){ - fprintf(stderr, "Signal handler %s for signal %d failed\n", - "sigbus_handler", SIGBUS); + if (verify_signal_handlers(SIGBUS, sigbus_handler) != 0) { + fprintf(stderr, "Signal handler %s for signal %d failed\n", + "sigbus_handler", SIGBUS); } - if (verify_signal_handlers (SIGSEGV, sigsegv_handler) != 0){ - fprintf(stderr, "Signal handler %s for signal %d failed\n", - "sigsegv_handler", SIGSEGV); + if (verify_signal_handlers(SIGSEGV, sigsegv_handler) != 0) { + fprintf(stderr, "Signal handler %s for signal %d failed\n", + "sigsegv_handler", SIGSEGV); + } + if (verify_signal_handlers(SIGILL, sigill_handler) != 0) { + fprintf(stderr, "Signal handler %s for signal %d failed\n", + "sigill_handler", SIGILL); } #else align_status_g |= STA_NoHandlerVerify; diff --git a/src/H5private.h b/src/H5private.h index 63cc0cc..2ca82e4 100644 --- a/src/H5private.h +++ b/src/H5private.h @@ -160,6 +160,10 @@ #include <dirent.h> #endif +/* Define the default VFD for this platform. + * Since the removal of the Windows VFD, this is sec2 for all platforms. + */ +#define H5_DEFAULT_VFD H5FD_SEC2 #ifdef H5_HAVE_WIN32_API /* The following two defines must be before any windows headers are included */ @@ -213,7 +217,7 @@ #define MPE_LOG_VARS \ static int eventa(FUNC) = -1; \ static int eventb(FUNC) = -1; \ - char p_event_start[100]; + char p_event_start[128]; /* Hardwire the color to "red", since that's what all the routines are using * now. In the future, if we want to change that color for a given routine, @@ -271,12 +275,10 @@ #endif /* - * Does the compiler support the __attribute__(()) syntax? This is how gcc - * suppresses warnings about unused function arguments. It's no big deal if - * we don't. + * Does the compiler support the __attribute__(()) syntax? It's no + * big deal if we don't. */ #ifdef __cplusplus -# define __attribute__(X) /*void*/ # define UNUSED /*void*/ # define NORETURN /*void*/ #else /* __cplusplus */ @@ -284,7 +286,6 @@ # define UNUSED __attribute__((unused)) # define NORETURN __attribute__((noreturn)) #else -# define __attribute__(X) /*void*/ # define UNUSED /*void*/ # define NORETURN /*void*/ #endif @@ -476,6 +477,48 @@ # define H5_DEC_ENUM(TYPE,VAR) (VAR)=((TYPE)((VAR)-1)) #endif +/* Double constant wrapper + * + * Quiets gcc warnings from -Wunsuffixed-float-constants. + * + * This is a really annoying warning since the standard specifies that + * constants of type double do NOT get a suffix so there's no way + * to specify a constant of type double. To quiet gcc, we specify floating + * point constants as type long double and cast to double. + * + * Note that this macro only needs to be used where using a double + * is important. For most code, suffixing constants with F will quiet the + * compiler and not produce erroneous code. + */ +#define H5_DOUBLE(S) ((double) S ## L) + +/* + * Methods to compare the equality of floating-point values: + * + * 1. H5_XXX_ABS_EQUAL - check if the difference is smaller than the + * Epsilon value. The Epsilon values, FLT_EPSILON, DBL_EPSILON, + * and LDBL_EPSILON, are defined by compiler in float.h. + * + * 2. H5_XXX_REL_EQUAL - check if the relative difference is smaller than a + * predefined value M. See if two values are relatively equal. + * It's the developer's responsibility not to pass in the value 0, which + * may cause the equation to fail. + */ +#define H5_FLT_ABS_EQUAL(X,Y) (HDfabsf(X-Y) < FLT_EPSILON) +#define H5_DBL_ABS_EQUAL(X,Y) (HDfabs (X-Y) < DBL_EPSILON) +#define H5_LDBL_ABS_EQUAL(X,Y) (HDfabsl(X-Y) < LDBL_EPSILON) + +#define H5_FLT_REL_EQUAL(X,Y,M) (HDfabsf((Y-X) / X) < M) +#define H5_DBL_REL_EQUAL(X,Y,M) (HDfabs ((Y-X) / X) < M) +#define H5_LDBL_REL_EQUAL(X,Y,M) (HDfabsl((Y-X) / X) < M) + +/* KiB, MiB, GiB, TiB, EiB - Used in profiling and timing code */ +#define H5_KB (1024.0F) +#define H5_MB (1024.0F * 1024.0F) +#define H5_GB (1024.0F * 1024.0F * 1024.0F) +#define H5_TB (1024.0F * 1024.0F * 1024.0F * 1024.0F) +#define H5_EB (1024.0F * 1024.0F * 1024.0F * 1024.0F * 1024.0F) + /* * Data types and functions for timing certain parts of the library. */ @@ -567,9 +610,6 @@ typedef struct { #ifndef HDatol #define HDatol(S) atol(S) #endif /* HDatol */ -#ifndef HDBSDgettimeofday - #define HDBSDgettimeofday(S,P) BSDgettimeofday(S,P) -#endif /* HDBSDgettimeofday */ #ifndef HDbsearch #define HDbsearch(K,B,N,Z,F) bsearch(K,B,N,Z,F) #endif /* HDbsearch */ diff --git a/src/H5public.h b/src/H5public.h index 673aa6f..7bacb3d 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -94,10 +94,10 @@ extern "C" { /* Version numbers */ #define H5_VERS_MAJOR 1 /* For major interface/format changes */ #define H5_VERS_MINOR 9 /* For minor interface/format changes */ -#define H5_VERS_RELEASE 215 /* For tweaks, bug-fixes, or development */ +#define H5_VERS_RELEASE 216 /* For tweaks, bug-fixes, or development */ #define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */ /* Empty string for real releases. */ -#define H5_VERS_INFO "HDF5 library version: 1.9.215" /* Full version string */ +#define H5_VERS_INFO "HDF5 library version: 1.9.216" /* Full version string */ #define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ H5_VERS_RELEASE) @@ -332,6 +332,8 @@ H5_DLL herr_t H5get_libversion(unsigned *majnum, unsigned *minnum, H5_DLL herr_t H5check_version(unsigned majnum, unsigned minnum, unsigned relnum); H5_DLL herr_t H5free_memory(void *mem); +H5_DLL void *H5allocate_memory(size_t size, hbool_t clear); +H5_DLL void *H5resize_memory(void *mem, size_t size); #ifdef __cplusplus } diff --git a/src/H5system.c b/src/H5system.c index 437a004..56db380 100644 --- a/src/H5system.c +++ b/src/H5system.c @@ -313,7 +313,7 @@ HDfprintf(FILE *stream, const char *fmt, ...) case 'G': if(!HDstrcmp(modifier, "h")) { float x = (float)va_arg(ap, double); - n = fprintf(stream, format_templ, x); + n = fprintf(stream, format_templ, (double)x); } else if(!*modifier || !HDstrcmp(modifier, "l")) { double x = va_arg(ap, double); n = fprintf(stream, format_templ, x); diff --git a/src/H5timer.c b/src/H5timer.c index 301d98b..94f2883 100644 --- a/src/H5timer.c +++ b/src/H5timer.c @@ -90,8 +90,6 @@ * Programmer: Robb Matzke * Thursday, April 16, 1998 * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -112,8 +110,6 @@ H5_timer_reset (H5_timer_t *timer) * Programmer: Robb Matzke * Thursday, April 16, 1998 * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -131,18 +127,18 @@ H5_timer_begin (H5_timer_t *timer) #ifdef H5_HAVE_GETRUSAGE HDgetrusage (RUSAGE_SELF, &rusage); timer->utime = (double)rusage.ru_utime.tv_sec + - ((double)rusage.ru_utime.tv_usec / 1e6); + ((double)rusage.ru_utime.tv_usec / 1e6F); timer->stime = (double)rusage.ru_stime.tv_sec + - ((double)rusage.ru_stime.tv_usec / 1e6); + ((double)rusage.ru_stime.tv_usec / 1e6F); #else - timer->utime = 0.0; - timer->stime = 0.0; + timer->utime = 0.0F; + timer->stime = 0.0F; #endif #ifdef H5_HAVE_GETTIMEOFDAY HDgettimeofday (&etime, NULL); - timer->etime = (double)etime.tv_sec + ((double)etime.tv_usec / 1e6); + timer->etime = (double)etime.tv_sec + ((double)etime.tv_usec / 1e6F); #else - timer->etime = 0.0; + timer->etime = 0.0F; #endif } /* end H5_timer_begin() */ @@ -160,8 +156,6 @@ H5_timer_begin (H5_timer_t *timer) * Programmer: Robb Matzke * Thursday, April 16, 1998 * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -170,16 +164,16 @@ H5_timer_end (H5_timer_t *sum/*in,out*/, H5_timer_t *timer/*in,out*/) H5_timer_t now; HDassert(timer); - H5_timer_begin (&now); + H5_timer_begin(&now); - timer->utime = MAX(0.0, now.utime - timer->utime); - timer->stime = MAX(0.0, now.stime - timer->stime); - timer->etime = MAX(0.0, now.etime - timer->etime); + timer->utime = MAX(0.0F, now.utime - timer->utime); + timer->stime = MAX(0.0F, now.stime - timer->stime); + timer->etime = MAX(0.0F, now.etime - timer->etime); if (sum) { - sum->utime += timer->utime; - sum->stime += timer->stime; - sum->etime += timer->etime; + sum->utime += timer->utime; + sum->stime += timer->stime; + sum->etime += timer->etime; } } /* end H5_timer_end() */ @@ -207,8 +201,6 @@ H5_timer_end (H5_timer_t *sum/*in,out*/, H5_timer_t *timer/*in,out*/) * Programmer: Robb Matzke * Wednesday, August 5, 1998 * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -216,35 +208,34 @@ H5_bandwidth(char *buf/*out*/, double nbytes, double nseconds) { double bw; - if(nseconds <= 0.0) - HDstrcpy(buf, " NaN"); + if(nseconds <= 0.0F) + HDstrcpy(buf, " NaN"); else { - bw = nbytes/nseconds; - if(HDfabs(bw) < 0.0000000001) - /* That is == 0.0, but direct comparison between floats is bad */ - HDstrcpy(buf, "0.000 B/s"); - else if(bw < 1.0) - sprintf(buf, "%10.4e", bw); - else if(bw < 1024.0) { - sprintf(buf, "%05.4f", bw); - HDstrcpy(buf+5, " B/s"); - } else if(bw < (1024.0 * 1024.0)) { - sprintf(buf, "%05.4f", bw / 1024.0); - HDstrcpy(buf+5, " kB/s"); - } else if(bw < (1024.0 * 1024.0 * 1024.0)) { - sprintf(buf, "%05.4f", bw / (1024.0 * 1024.0)); - HDstrcpy(buf+5, " MB/s"); - } else if(bw < (1024.0 * 1024.0 * 1024.0 * 1024.0)) { - sprintf(buf, "%05.4f", bw / (1024.0 * 1024.0 * 1024.0)); - HDstrcpy(buf+5, " GB/s"); - } else if(bw < (1024.0 * 1024.0 * 1024.0 * 1024.0 * 1024.0)) { - sprintf(buf, "%05.4f", bw / (1024.0 * 1024.0 * 1024.0 * 1024.0)); - HDstrcpy(buf+5, " TB/s"); - } else { - sprintf(buf, "%10.4e", bw); - if(HDstrlen(buf) > 10) - sprintf(buf, "%10.3e", bw); - } + bw = nbytes/nseconds; + if(H5_DBL_ABS_EQUAL(bw, 0.0F)) + HDstrcpy(buf, "0.000 B/s"); + else if(bw < 1.0F) + sprintf(buf, "%10.4e", bw); + else if(bw < H5_KB) { + sprintf(buf, "%05.4f", bw); + HDstrcpy(buf+5, " B/s"); + } else if(bw < H5_MB) { + sprintf(buf, "%05.4f", bw / H5_KB); + HDstrcpy(buf+5, " kB/s"); + } else if(bw < H5_GB) { + sprintf(buf, "%05.4f", bw / H5_MB); + HDstrcpy(buf+5, " MB/s"); + } else if(bw < H5_TB) { + sprintf(buf, "%05.4f", bw / H5_GB); + HDstrcpy(buf+5, " GB/s"); + } else if(bw < H5_EB) { + sprintf(buf, "%05.4f", bw / H5_TB); + HDstrcpy(buf+5, " TB/s"); + } else { + sprintf(buf, "%10.4e", bw); + if(HDstrlen(buf) > 10) + sprintf(buf, "%10.3e", bw); + } } } /* end H5_bandwidth() */ diff --git a/src/H5trace.c b/src/H5trace.c index dfa5dce..6d07e8a 100644 --- a/src/H5trace.c +++ b/src/H5trace.c @@ -110,7 +110,7 @@ * SO MAY CAUSE H5_trace() TO BE INVOKED RECURSIVELY OR MAY * CAUSE LIBRARY INITIALIZATIONS THAT ARE NOT DESIRED. * - * Return: void + * Return: Execution time for an API call * * Programmer: Robb Matzke * Tuesday, June 16, 1998 @@ -129,34 +129,34 @@ H5_trace(const double *returning, const char *func, const char *type, ...) void *vp = NULL; FILE *out = H5_debug_g.trace; H5_timer_t event_time; - static H5_timer_t first_time = {0.0, 0.0, 0.0}; + static H5_timer_t first_time = {0.0F, 0.0F, 0.0F}; static int current_depth = 0; static int last_call_depth = 0; /* FUNC_ENTER() should not be called */ if(!out) - return 0.0; /*tracing is off*/ + return 0.0F; /*tracing is off*/ va_start(ap, type); if(H5_debug_g.ttop) { if(returning) { if(current_depth > 1) { --current_depth; - return 0.0; + return 0.0F; } /* end if */ } /* end if */ else { if(current_depth > 0) { /*do not update last_call_depth*/ current_depth++; - return 0.0; + return 0.0F; } /* end if */ } /* end else */ } /* end if */ - /* Get tim for event */ - if(HDfabs(first_time.etime) < 0.0000000001) + /* Get time for event */ + if(HDfabs(first_time.etime) < 0.0000000001F) /* That is == 0.0, but direct comparison between floats is bad */ H5_timer_begin(&first_time); if(H5_debug_g.ttimes) diff --git a/src/Makefile.am b/src/Makefile.am index 11525fb..e538635 100644 --- a/src/Makefile.am +++ b/src/Makefile.am @@ -121,7 +121,7 @@ include_HEADERS = hdf5.h H5api_adpt.h H5overflow.h H5pubconf.h H5public.h H5vers H5VLpublic.h H5VLnative.h \ H5Gpublic.h H5Ipublic.h H5Lpublic.h \ H5MMpublic.h H5Opublic.h H5Ppublic.h \ - H5PLextern.h \ + H5PLextern.h H5PLpublic.h \ H5Rpublic.h H5Spublic.h \ H5Tpublic.h H5Zpublic.h diff --git a/src/Makefile.in b/src/Makefile.in index 84b5c21..bee19e9 100644 --- a/src/Makefile.in +++ b/src/Makefile.in @@ -109,7 +109,8 @@ noinst_PROGRAMS = H5detect$(EXEEXT) H5make_libsettings$(EXEEXT) TESTS = subdir = src ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.ac +am__aclocal_m4_deps = $(top_srcdir)/m4/aclocal_cxx.m4 \ + $(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -469,7 +470,6 @@ AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ -AS = @AS@ AUTOCONF = @AUTOCONF@ AUTOHEADER = @AUTOHEADER@ AUTOMAKE = @AUTOMAKE@ @@ -501,7 +501,6 @@ DIRECT_VFD = @DIRECT_VFD@ DLLTOOL = @DLLTOOL@ DSYMUTIL = @DSYMUTIL@ DUMPBIN = @DUMPBIN@ -DYNAMIC_DIRS = @DYNAMIC_DIRS@ ECHO_C = @ECHO_C@ ECHO_N = @ECHO_N@ ECHO_T = @ECHO_T@ @@ -520,17 +519,14 @@ FCFLAGS_f90 = @FCFLAGS_f90@ FCLIBS = @FCLIBS@ FC_VERSION = @FC_VERSION@ FGREP = @FGREP@ -FILTERS = @FILTERS@ FSEARCH_DIRS = @FSEARCH_DIRS@ GREP = @GREP@ H5_CFLAGS = @H5_CFLAGS@ H5_CPPFLAGS = @H5_CPPFLAGS@ H5_CXXFLAGS = @H5_CXXFLAGS@ -H5_CXX_SHARED = @H5_CXX_SHARED@ H5_FCFLAGS = @H5_FCFLAGS@ H5_FORTRAN_SHARED = @H5_FORTRAN_SHARED@ H5_LDFLAGS = @H5_LDFLAGS@ -H5_LONE_COLON = @H5_LONE_COLON@ H5_VERSION = @H5_VERSION@ HADDR_T = @HADDR_T@ HAVE_DMALLOC = @HAVE_DMALLOC@ @@ -593,7 +589,6 @@ R_INTEGER = @R_INTEGER@ R_LARGE = @R_LARGE@ SEARCH = @SEARCH@ SED = @SED@ -SETX = @SETX@ SET_MAKE = @SET_MAKE@ SHELL = @SHELL@ SIZE_T = @SIZE_T@ @@ -608,10 +603,6 @@ TR = @TR@ TRACE_API = @TRACE_API@ UNAME_INFO = @UNAME_INFO@ USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@ -USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@ -USE_FILTER_NBIT = @USE_FILTER_NBIT@ -USE_FILTER_SCALEOFFSET = @USE_FILTER_SCALEOFFSET@ -USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@ USE_FILTER_SZIP = @USE_FILTER_SZIP@ USINGMEMCHECKER = @USINGMEMCHECKER@ VERSION = @VERSION@ @@ -725,15 +716,15 @@ TRACE = perl $(top_srcdir)/bin/trace # .chkexe files are used to mark tests that have run successfully. # .chklog files are output from those tests. -# *.clog are from the MPE option. -CHECK_CLEANFILES = *.chkexe *.chklog *.clog +# *.clog and *.clog2 are from the MPE option. +CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. # After making changes, run bin/reconfigure to update other configure related # files like Makefile.in. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 205 +LT_VERS_REVISION = 206 LT_VERS_AGE = 0 # Our main target, the HDF5 library @@ -829,7 +820,7 @@ include_HEADERS = hdf5.h H5api_adpt.h H5overflow.h H5pubconf.h H5public.h H5vers H5VLpublic.h H5VLnative.h \ H5Gpublic.h H5Ipublic.h H5Lpublic.h \ H5MMpublic.h H5Opublic.h H5Ppublic.h \ - H5PLextern.h \ + H5PLextern.h H5PLpublic.h \ H5Rpublic.h H5Spublic.h \ H5Tpublic.h H5Zpublic.h @@ -33,7 +33,8 @@ #include "H5Lpublic.h" /* Links */ #include "H5MMpublic.h" /* Memory management */ #include "H5Opublic.h" /* Object headers */ -#include "H5Ppublic.h" /* Property lists */ +#include "H5Ppublic.h" /* Property lists */ +#include "H5PLpublic.h" /* Plugins */ #include "H5Rpublic.h" /* References */ #include "H5Spublic.h" /* Dataspaces */ #include "H5Tpublic.h" /* Datatypes */ diff --git a/src/libhdf5.settings.in b/src/libhdf5.settings.in index 424334d..1b1ae96 100644 --- a/src/libhdf5.settings.in +++ b/src/libhdf5.settings.in @@ -62,7 +62,6 @@ Features: Default API Mapping: @DEFAULT_API_VERSION@ With Deprecated Public Symbols: @DEPRECATED_SYMBOLS@ I/O filters (external): @EXTERNAL_FILTERS@ - I/O filters (internal): @FILTERS@ MPE: @MPE@ Direct VFD: @DIRECT_VFD@ dmalloc: @HAVE_DMALLOC@ |