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authorNeil Fortner <nfortne2@hdfgroup.org>2016-11-29 23:45:20 (GMT)
committerNeil Fortner <nfortne2@hdfgroup.org>2016-11-29 23:45:20 (GMT)
commitb866bbfe3a2f8b0c3e643a99aebf505bebc3418c (patch)
tree3d2feb0155fd32319f17b97b5cb0e19f859447ca /src
parent2b28dc62469fb21cb0fff1082e5a6a764e2de8b7 (diff)
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Fix bugs in read/write implementation. Only seems to read/write the
first element. Examples don't build correctly with make.
Diffstat (limited to 'src')
-rw-r--r--src/H5FF.c12
-rw-r--r--src/H5FFpublic.h8
-rw-r--r--src/H5VLdaosm.c42
3 files changed, 34 insertions, 28 deletions
diff --git a/src/H5FF.c b/src/H5FF.c
index 41bba51..2495377 100644
--- a/src/H5FF.c
+++ b/src/H5FF.c
@@ -570,12 +570,12 @@ H5Dwrite_ff(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id)))
HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
if(H5P_set(plist, H5VL_TRANS_ID, &trans_id) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't set property value for trans_id")
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set property value for trans_id")
/* Write the data through the VOL */
if((ret_value = H5VL_dataset_write(dset->vol_obj, dset->vol_info->vol_cls, mem_type_id, mem_space_id,
file_space_id, dxpl_id, buf, H5_REQUEST_NULL)) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write data")=
+ HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write data")
done:
FUNC_LEAVE_API(ret_value)
@@ -597,7 +597,7 @@ done:
*/
herr_t
H5Dread_ff(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
- hid_t file_space_id, hid_t dxpl_id, void *buf, hid_t rcxt_id)
+ hid_t file_space_id, hid_t dxpl_id, void *buf, hid_t trans_id)
{
H5VL_object_t *dset = NULL;
H5P_genplist_t *plist; /* Property list pointer */
@@ -605,7 +605,7 @@ H5Dread_ff(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
FUNC_ENTER_API(FAIL)
H5TRACE7("e", "iiiii*xi", dset_id, mem_type_id, mem_space_id, file_space_id,
- dxpl_id, buf, rcxt_id);
+ dxpl_id, buf, trans_id);
if(NULL == (dset = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset")
@@ -622,8 +622,8 @@ H5Dread_ff(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
/* store the transaction ID in the dxpl */
if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id)))
HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
- if(H5P_set(plist, H5VL_CONTEXT_ID, &rcxt_id) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't set property value for rcxt_id")
+ if(H5P_set(plist, H5VL_TRANS_ID, &trans_id) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set property value for trans_id")
/* Read the data through the VOL */
if((ret_value = H5VL_dataset_read(dset->vol_obj, dset->vol_info->vol_cls, mem_type_id, mem_space_id,
diff --git a/src/H5FFpublic.h b/src/H5FFpublic.h
index 4ccdb01..1208f62 100644
--- a/src/H5FFpublic.h
+++ b/src/H5FFpublic.h
@@ -50,15 +50,19 @@ extern "C" {
/* API wrappers */
H5_DLL hid_t H5Fcreate_ff(const char *filename, unsigned flags, hid_t fcpl_id,
- hid_t fapl_id, hid_t *trans_id);
+ hid_t fapl_id, hid_t *trans_id/*out*/);
H5_DLL hid_t H5Fopen_ff(const char *filename, unsigned flags, hid_t fapl_id,
- hid_t *trans_id);
+ hid_t *trans_id/*out*/);
H5_DLL herr_t H5Fclose_ff(hid_t file_id, hid_t trans_id);
H5_DLL hid_t H5Dcreate_ff(hid_t loc_id, const char *name, hid_t type_id,
hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id,
hid_t trans_id);
H5_DLL hid_t H5Dopen_ff(hid_t loc_id, const char *name, hid_t dapl_id,
hid_t trans_id);
+H5_DLL herr_t H5Dwrite_ff(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
+ hid_t file_space_id, hid_t dxpl_id, const void *buf, hid_t trans_id);
+H5_DLL herr_t H5Dread_ff(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
+ hid_t file_space_id, hid_t dxpl_id, void *buf/*out*/, hid_t trans_id);
H5_DLL herr_t H5Dclose_ff(hid_t dset_id, hid_t trans_id);
#endif /* H5_HAVE_EFF */
diff --git a/src/H5VLdaosm.c b/src/H5VLdaosm.c
index 4f53a5b..b32ce92 100644
--- a/src/H5VLdaosm.c
+++ b/src/H5VLdaosm.c
@@ -1588,7 +1588,7 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5VL_daos_dataset_read
+ * Function: H5VL_daosm_dataset_read
*
* Purpose: Reads raw data from a dataset into a buffer.
*
@@ -1601,7 +1601,7 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5VL_iod_dataset_read(void *_dset, hid_t H5_ATTR_UNUSED mem_type_id, hid_t H5_ATTR_UNUSED mem_space_id,
+H5VL_daosm_dataset_read(void *_dset, hid_t H5_ATTR_UNUSED mem_type_id, hid_t H5_ATTR_UNUSED mem_space_id,
hid_t H5_ATTR_UNUSED file_space_id, hid_t dxpl_id, void *buf,
void H5_ATTR_UNUSED **req)
{
@@ -1622,20 +1622,21 @@ H5VL_iod_dataset_read(void *_dset, hid_t H5_ATTR_UNUSED mem_type_id, hid_t H5_AT
size_t type_size;
uint64_t chunk_size;
uint8_t *p;
+ int ret;
int i;
- void *ret_value = NULL;
+ herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT
/* get the transaction ID */
if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id)))
- HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, NULL, "can't find object for ID");
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID");
if(H5P_get(plist, H5VL_TRANS_ID, &trans_id) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get property value for trans_id");
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for trans_id");
/* get the TR object */
if(NULL == (tr = (H5TR_t *)H5I_object_verify(trans_id, H5I_TR)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "not a Transaction ID")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a Transaction ID")
/* Get dataspace extent */
if((ndims = H5Sget_simple_extent_ndims(dset->space_id)) < 0)
@@ -1657,13 +1658,13 @@ H5VL_iod_dataset_read(void *_dset, hid_t H5_ATTR_UNUSED mem_type_id, hid_t H5_AT
* starting at 0. */
HDmemset(chunk_coords, 0, sizeof(chunk_coords)); //DSMINC
p = dkey_buf;
- *p++ == (uint8_t)'/';
+ *p++ = (uint8_t)'/';
for(i = 0; i < ndims; i++)
UINT64ENCODE(p, chunk_coords[i])
/* Set up operation to write data */
/* Set up dkey */
- daos_iov_set(&dkey, dkey_buf, (daos_size_t)(1 + (ndims * sizeof(chunk_coords[0]))));
+ daos_iov_set(&dkey, dkey_buf, (daos_size_t)(1 + ((size_t)ndims * sizeof(chunk_coords[0]))));
/* Set up recx */
recx.rx_rsize = (uint64_t)type_size;
@@ -1684,15 +1685,15 @@ H5VL_iod_dataset_read(void *_dset, hid_t H5_ATTR_UNUSED mem_type_id, hid_t H5_AT
/* Write data to dataset */
if(0 != (ret = daos_obj_fetch(dset->obj_oh, tr->epoch, &dkey, 1, &iod, &sgl, NULL /*maps*/, NULL /*event*/)))
- HGOTO_ERROR(H5E_DATASET, H5E_READERROR, NULL, "can't read data from dataset: %d", ret)
+ HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read data from dataset: %d", ret)
done:
FUNC_LEAVE_NOAPI(ret_value)
-} /* end H5VL_iod_dataset_read() */
+} /* end H5VL_daosm_dataset_read() */
/*-------------------------------------------------------------------------
- * Function: H5VL_daos_dataset_write
+ * Function: H5VL_daosm_dataset_write
*
* Purpose: Writes raw data from a buffer into a dataset.
*
@@ -1705,7 +1706,7 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-H5VL_iod_dataset_write(void *_dset, hid_t H5_ATTR_UNUSED mem_type_id, hid_t H5_ATTR_UNUSED mem_space_id,
+H5VL_daosm_dataset_write(void *_dset, hid_t H5_ATTR_UNUSED mem_type_id, hid_t H5_ATTR_UNUSED mem_space_id,
hid_t H5_ATTR_UNUSED file_space_id, hid_t dxpl_id, const void *buf,
void H5_ATTR_UNUSED **req)
{
@@ -1726,20 +1727,21 @@ H5VL_iod_dataset_write(void *_dset, hid_t H5_ATTR_UNUSED mem_type_id, hid_t H5_A
size_t type_size;
uint64_t chunk_size;
uint8_t *p;
+ int ret;
int i;
- void *ret_value = NULL;
+ herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT
/* get the transaction ID */
if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id)))
- HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, NULL, "can't find object for ID");
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID");
if(H5P_get(plist, H5VL_TRANS_ID, &trans_id) < 0)
- HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get property value for trans_id");
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for trans_id");
/* get the TR object */
if(NULL == (tr = (H5TR_t *)H5I_object_verify(trans_id, H5I_TR)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "not a Transaction ID")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a Transaction ID")
/* Get dataspace extent */
if((ndims = H5Sget_simple_extent_ndims(dset->space_id)) < 0)
@@ -1761,13 +1763,13 @@ H5VL_iod_dataset_write(void *_dset, hid_t H5_ATTR_UNUSED mem_type_id, hid_t H5_A
* starting at 0. */
HDmemset(chunk_coords, 0, sizeof(chunk_coords)); //DSMINC
p = dkey_buf;
- *p++ == (uint8_t)'/';
+ *p++ = (uint8_t)'/';
for(i = 0; i < ndims; i++)
UINT64ENCODE(p, chunk_coords[i])
/* Set up operation to write data */
/* Set up dkey */
- daos_iov_set(&dkey, dkey_buf, (daos_size_t)(1 + (ndims * sizeof(chunk_coords[0]))));
+ daos_iov_set(&dkey, dkey_buf, (daos_size_t)(1 + ((size_t)ndims * sizeof(chunk_coords[0]))));
/* Set up recx */
recx.rx_rsize = (uint64_t)type_size;
@@ -1788,11 +1790,11 @@ H5VL_iod_dataset_write(void *_dset, hid_t H5_ATTR_UNUSED mem_type_id, hid_t H5_A
/* Write data to dataset */
if(0 != (ret = daos_obj_update(dset->obj_oh, tr->epoch, &dkey, 1, &iod, &sgl, NULL /*event*/)))
- HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, NULL, "can't write data to dataset: %d", ret)
+ HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write data to dataset: %d", ret)
done:
FUNC_LEAVE_NOAPI(ret_value)
-} /* end H5VL_iod_dataset_write() */
+} /* end H5VL_daosm_dataset_write() */
/*-------------------------------------------------------------------------