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authorNeil Fortner <nfortne2@hdfgroup.org>2017-06-01 23:17:08 (GMT)
committerNeil Fortner <nfortne2@hdfgroup.org>2017-06-01 23:17:08 (GMT)
commitdd657cb32f810f8e3fa2908ae1400a9c457aa6f7 (patch)
tree0c82b43a7547584c74a9fdca6f0a969167bc4843 /src
parentbacb72e8466736c0d6495f2f3f64223b86bf9e7f (diff)
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Add support for committed datatypes. Add h5dsm_tcommit.c test for this.
Fix potential memory issue with collective object opens. Other minor fixes/cleanup.
Diffstat (limited to 'src')
-rw-r--r--src/H5VLdaosm.c523
-rw-r--r--src/H5VLdaosm.h10
2 files changed, 513 insertions, 20 deletions
diff --git a/src/H5VLdaosm.c b/src/H5VLdaosm.c
index 230db7d..eb13622 100644
--- a/src/H5VLdaosm.c
+++ b/src/H5VLdaosm.c
@@ -64,6 +64,7 @@ hid_t H5VL_DAOSM_g = -1;
#define H5VL_DAOSM_LINK_VAL_BUF_SIZE 256
#define H5VL_DAOSM_GINFO_BUF_SIZE 256
#define H5VL_DAOSM_DINFO_BUF_SIZE 1024
+#define H5VL_DAOSM_TINFO_BUF_SIZE 1024
#define H5VL_DAOSM_SEQ_LIST_LEN 128
#define H5VL_DAOSM_ITER_LEN 128
#define H5VL_DAOSM_ITER_SIZE_INIT (4 * 1024)
@@ -164,10 +165,13 @@ static herr_t H5VL_daosm_dataset_get(void *_dset, H5VL_dataset_get_t get_type,
static herr_t H5VL_daosm_dataset_close(void *_dset, hid_t dxpl_id, void **req);
/* Datatype callbacks */
+static void *H5VL_daosm_datatype_commit(void *obj, H5VL_loc_params_t loc_params,
+ const char *name, hid_t type_id, hid_t lcpl_id, hid_t tcpl_id,
+ hid_t tapl_id, hid_t dxpl_id, void **req);
static void *H5VL_daosm_datatype_open(void *_item, H5VL_loc_params_t loc_params,
const char *name, hid_t tapl_id, hid_t dxpl_id, void **req);
-static herr_t H5VL_daosm_datatype_close(void *_dtype, hid_t dxpl_id,
- void **req);
+static herr_t H5VL_daosm_datatype_get(void *obj, H5VL_datatype_get_t get_type,
+ hid_t dxpl_id, void **req, va_list arguments);
/* Object callbacks */
static void *H5VL_daosm_object_open(void *_item, H5VL_loc_params_t loc_params,
@@ -236,12 +240,16 @@ static herr_t H5VL_daosm_dataset_file_vl_cb(void *_elem, hid_t type_id,
static herr_t H5VL_daosm_dataset_mem_vl_wr_cb(void *_elem, hid_t type_id,
unsigned ndim, const hsize_t *point, void *_udata);
+static herr_t H5VL_daosm_datatype_close(void *_dtype, hid_t dxpl_id,
+ void **req);
+
static herr_t H5VL_daosm_object_close(void *_obj, hid_t dxpl_id, void **req);
/* Free list definitions */
H5FL_DEFINE(H5VL_daosm_file_t);
H5FL_DEFINE(H5VL_daosm_group_t);
H5FL_DEFINE(H5VL_daosm_dset_t);
+H5FL_DEFINE(H5VL_daosm_dtype_t);
H5FL_DEFINE(H5VL_daosm_map_t);
H5FL_DEFINE(H5VL_daosm_attr_t);
@@ -276,12 +284,12 @@ static H5VL_class_t H5VL_daosm_g = {
H5VL_daosm_dataset_close /* close */
},
{ /* datatype_cls */
- NULL,//H5VL_iod_datatype_commit, /* commit */
- NULL,//H5VL_iod_datatype_open, /* open */
- NULL,//H5VL_iod_datatype_get, /* get */
+ H5VL_daosm_datatype_commit, /* commit */
+ H5VL_daosm_datatype_open, /* open */
+ H5VL_daosm_datatype_get, /* get */
NULL, /* specific */
NULL, /* optional */
- NULL,//H5VL_iod_datatype_close /* close */
+ H5VL_daosm_datatype_close /* close */
},
{ /* file_cls */
H5VL_daosm_file_create, /* create */
@@ -3828,7 +3836,7 @@ H5VL_daosm_dataset_open(void *_item,
tot_len = type_len + space_len + dcpl_len;
/* Allocate dataset info buffer if necessary */
- if(tot_len > sizeof(dinfo_buf_static)) {
+ if((tot_len + (6 * sizeof(uint64_t))) > sizeof(dinfo_buf_static)) {
if(NULL == (dinfo_buf_dyn = (uint8_t *)H5MM_malloc(tot_len + (6 * sizeof(uint64_t)))))
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "can't allocate dataset info buffer")
dinfo_buf = dinfo_buf_dyn;
@@ -3936,7 +3944,7 @@ H5VL_daosm_dataset_open(void *_item,
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, NULL, "can't change selection")
p += space_len;
if((dset->dcpl_id = H5Pdecode(p)) < 0)
- HGOTO_ERROR(H5E_ARGS, H5E_CANTDECODE, NULL, "can't deserialize datatype")
+ HGOTO_ERROR(H5E_ARGS, H5E_CANTDECODE, NULL, "can't deserialize dataset creation property list")
/* Finish setting up dataset struct */
if((dset->dapl_id = H5Pcopy(dapl_id)) < 0)
@@ -5063,11 +5071,195 @@ H5VL_daosm_dataset_close(void *_dset, hid_t H5_ATTR_UNUSED dxpl_id,
/*-------------------------------------------------------------------------
+ * Function: H5VL_daosm_datatype_commit
+ *
+ * Purpose: Commits a datatype inside the container.
+ *
+ * Return: Success: datatype id.
+ * Failure: NULL
+ *
+ * Programmer: Neil Fortner
+ * June, 2017
+ *
+ *-------------------------------------------------------------------------
+ */
+static void *
+H5VL_daosm_datatype_commit(void *_item,
+ H5VL_loc_params_t H5_ATTR_UNUSED loc_params, const char *name,
+ hid_t type_id, hid_t H5_ATTR_UNUSED lcpl_id, hid_t tcpl_id, hid_t tapl_id,
+ hid_t dxpl_id, void **req)
+{
+ H5VL_daosm_item_t *item = (H5VL_daosm_item_t *)_item;
+ H5VL_daosm_dtype_t *dtype = NULL;
+ H5VL_daosm_group_t *target_grp = NULL;
+ void *type_buf = NULL;
+ void *tcpl_buf = NULL;
+ hbool_t collective = item->file->collective;
+ int ret;
+ void *ret_value = NULL;
+
+ FUNC_ENTER_NOAPI_NOINIT
+
+ /* Check for write access */
+ if(!(item->file->flags & H5F_ACC_RDWR))
+ HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "no write intent on file")
+
+ /* Check for collective access, if not already set by the file */
+ if(!collective)
+ if(H5Pget_all_coll_metadata_ops(tapl_id, &collective) < 0)
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, NULL, "can't get collective access property")
+
+ /* Allocate the dataset object that is returned to the user */
+ if(NULL == (dtype = H5FL_CALLOC(H5VL_daosm_dtype_t)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "can't allocate DAOS-M dataset struct")
+ dtype->obj.item.type = H5I_DATATYPE;
+ dtype->obj.item.file = item->file;
+ dtype->obj.item.rc = 1;
+ dtype->obj.obj_oh = DAOS_HDL_INVAL;
+ dtype->type_id = FAIL;
+ dtype->tcpl_id = FAIL;
+ dtype->tapl_id = FAIL;
+
+ /* Generate datatype oid */
+ H5VL_daosm_oid_encode(&dtype->obj.oid, item->file->max_oid + (uint64_t)1, H5I_DATATYPE);
+
+ /* Create datatype and write metadata if this process should */
+ if(!collective || (item->file->my_rank == 0)) {
+ const char *target_name = NULL;
+ H5VL_daosm_link_val_t link_val;
+ daos_key_t dkey;
+ daos_iod_t iod[2];
+ daos_sg_list_t sgl[2];
+ daos_iov_t sg_iov[2];
+ size_t type_size = 0;
+ size_t tcpl_size = 0;
+ char int_md_key[] = H5VL_DAOSM_INT_MD_KEY;
+ char type_key[] = H5VL_DAOSM_TYPE_KEY;
+ char tcpl_key[] = H5VL_DAOSM_CPL_KEY;
+
+ /* Traverse the path */
+ if(NULL == (target_grp = H5VL_daosm_group_traverse(item, name, dxpl_id, req, &target_name, NULL, NULL)))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_BADITER, NULL, "can't traverse path")
+
+ /* Create datatype */
+ /* Update max_oid */
+ item->file->max_oid = H5VL_daosm_oid_to_idx(dtype->obj.oid);
+
+ /* Write max OID */
+ if(H5VL_daosm_write_max_oid(item->file) < 0)
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, NULL, "can't write max OID")
+
+ /* Open datatype */
+ if(0 != (ret = daos_obj_open(item->file->coh, dtype->obj.oid, item->file->epoch, DAOS_OO_RW, &dtype->obj.obj_oh, NULL /*event*/)))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTOPENOBJ, NULL, "can't open datatype: %d", ret)
+
+ /* Encode datatype */
+ if(H5Tencode(type_id, NULL, &type_size) < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "can't determine serialized length of datatype")
+ if(NULL == (type_buf = H5MM_malloc(type_size)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "can't allocate buffer for serialized datatype")
+ if(H5Tencode(type_id, type_buf, &type_size) < 0)
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTENCODE, NULL, "can't serialize datatype")
+
+ /* Encode TCPL */
+ if(H5Pencode(tcpl_id, NULL, &tcpl_size) < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "can't determine serialized length of tcpl")
+ if(NULL == (tcpl_buf = H5MM_malloc(tcpl_size)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "can't allocate buffer for serialized tcpl")
+ if(H5Pencode(tcpl_id, tcpl_buf, &tcpl_size) < 0)
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTENCODE, NULL, "can't serialize tcpl")
+
+ /* Set up operation to write datatype and TCPL to datatype */
+ /* Set up dkey */
+ daos_iov_set(&dkey, int_md_key, (daos_size_t)(sizeof(int_md_key) - 1));
+
+ /* Set up iod */
+ HDmemset(iod, 0, sizeof(iod));
+ daos_iov_set(&iod[0].iod_name, (void *)type_key, (daos_size_t)(sizeof(type_key) - 1));
+ daos_csum_set(&iod[0].iod_kcsum, NULL, 0);
+ iod[0].iod_nr = 1u;
+ iod[0].iod_size = (uint64_t)type_size;
+ iod[0].iod_type = DAOS_IOD_SINGLE;
+
+ daos_iov_set(&iod[1].iod_name, (void *)tcpl_key, (daos_size_t)(sizeof(tcpl_key) - 1));
+ daos_csum_set(&iod[1].iod_kcsum, NULL, 0);
+ iod[1].iod_nr = 1u;
+ iod[1].iod_size = (uint64_t)tcpl_size;
+ iod[1].iod_type = DAOS_IOD_SINGLE;
+
+ /* Set up sgl */
+ daos_iov_set(&sg_iov[0], type_buf, (daos_size_t)type_size);
+ sgl[0].sg_nr.num = 1;
+ sgl[0].sg_nr.num_out = 0;
+ sgl[0].sg_iovs = &sg_iov[0];
+ daos_iov_set(&sg_iov[1], tcpl_buf, (daos_size_t)tcpl_size);
+ sgl[1].sg_nr.num = 1;
+ sgl[1].sg_nr.num_out = 0;
+ sgl[1].sg_iovs = &sg_iov[1];
+
+ /* Write internal metadata to datatype */
+ if(0 != (ret = daos_obj_update(dtype->obj.obj_oh, item->file->epoch, &dkey, 2, iod, sgl, NULL /*event*/)))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, NULL, "can't write metadata to datatype: %d", ret)
+
+ /* Create link to datatype */
+ link_val.type = H5L_TYPE_HARD;
+ link_val.target.hard = dtype->obj.oid;
+ if(H5VL_daosm_link_write(target_grp, target_name, HDstrlen(target_name), &link_val) < 0)
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, NULL, "can't create link to datatype")
+ } /* end if */
+ else {
+ /* Update max_oid */
+ item->file->max_oid = dtype->obj.oid.lo;
+
+ /* Note no barrier is currently needed here, daos_obj_open is a local
+ * operation and can occur before the lead process writes metadata. For
+ * app-level synchronization we could add a barrier or bcast though it
+ * could only be an issue with datatype reopen so we'll skip it for now.
+ * There is probably never an issue with file reopen since all commits
+ * are from process 0, same as the datatype create above. */
+
+ /* Open datatype */
+ if(0 != (ret = daos_obj_open(item->file->coh, dtype->obj.oid, item->file->epoch, DAOS_OO_RW, &dtype->obj.obj_oh, NULL /*event*/)))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTOPENOBJ, NULL, "can't open datatype: %d", ret)
+ } /* end else */
+
+ /* Finish setting up datatype struct */
+ if((dtype->type_id = H5Tcopy(type_id)) < 0)
+ HGOTO_ERROR(H5E_SYM, H5E_CANTCOPY, NULL, "failed to copy datatype")
+ if((dtype->tcpl_id = H5Pcopy(tcpl_id)) < 0)
+ HGOTO_ERROR(H5E_SYM, H5E_CANTCOPY, NULL, "failed to copy tcpl")
+ if((dtype->tapl_id = H5Pcopy(tapl_id)) < 0)
+ HGOTO_ERROR(H5E_SYM, H5E_CANTCOPY, NULL, "failed to copy tapl")
+
+ /* Set return value */
+ ret_value = (void *)dtype;
+
+done:
+ /* Close target group */
+ if(target_grp && H5VL_daosm_group_close(target_grp, dxpl_id, req) < 0)
+ HDONE_ERROR(H5E_DATATYPE, H5E_CLOSEERROR, NULL, "can't close group")
+
+ /* Cleanup on failure */
+ /* Destroy DAOS object if created before failure DSMINC */
+ if(NULL == ret_value)
+ /* Close dataset */
+ if(dtype && H5VL_daosm_datatype_close(dtype, dxpl_id, req) < 0)
+ HDONE_ERROR(H5E_DATATYPE, H5E_CLOSEERROR, NULL, "can't close datatype")
+
+ /* Free memory */
+ type_buf = H5MM_xfree(type_buf);
+ tcpl_buf = H5MM_xfree(tcpl_buf);
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5VL_daosm_datatype_commit() */
+
+
+/*-------------------------------------------------------------------------
* Function: H5VL_daosm_datatype_open
*
* Purpose: Opens a DAOS HDF5 datatype.
*
- * Return: Success: datatype id.
+ * Return: Success: datatype id.
* Failure: NULL
*
* Programmer: Neil Fortner
@@ -5076,22 +5268,297 @@ H5VL_daosm_dataset_close(void *_dset, hid_t H5_ATTR_UNUSED dxpl_id,
*-------------------------------------------------------------------------
*/
static void *
-H5VL_daosm_datatype_open(void H5_ATTR_UNUSED *_item,
- H5VL_loc_params_t H5_ATTR_UNUSED loc_params,
- const char H5_ATTR_UNUSED *name, hid_t H5_ATTR_UNUSED tapl_id,
- hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req)
+H5VL_daosm_datatype_open(void *_item,
+ H5VL_loc_params_t H5_ATTR_UNUSED loc_params, const char *name,
+ hid_t tapl_id, hid_t dxpl_id, void **req)
{
+ H5VL_daosm_item_t *item = (H5VL_daosm_item_t *)_item;
+ H5VL_daosm_dtype_t *dtype = NULL;
+ H5VL_daosm_group_t *target_grp = NULL;
+ const char *target_name = NULL;
+ daos_key_t dkey;
+ daos_iod_t iod[2];
+ daos_sg_list_t sgl[2];
+ daos_iov_t sg_iov[2];
+ uint64_t type_len = 0;
+ uint64_t tcpl_len = 0;
+ uint64_t tot_len;
+ uint8_t tinfo_buf_static[H5VL_DAOSM_TINFO_BUF_SIZE];
+ uint8_t *tinfo_buf_dyn = NULL;
+ uint8_t *tinfo_buf = tinfo_buf_static;
+ char int_md_key[] = H5VL_DAOSM_INT_MD_KEY;
+ char type_key[] = H5VL_DAOSM_TYPE_KEY;
+ char tcpl_key[] = H5VL_DAOSM_CPL_KEY;
+ uint8_t *p;
+ hbool_t collective = item->file->collective;
+ hbool_t must_bcast = FALSE;
+ int ret;
void *ret_value = NULL;
- FUNC_ENTER_NOAPI_NOINIT_NOERR
+ FUNC_ENTER_NOAPI_NOINIT
- HDassert(0 && "Not implemented (should not be called)");
+ /* Check for collective access, if not already set by the file */
+ if(!collective)
+ if(H5Pget_all_coll_metadata_ops(tapl_id, &collective) < 0)
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, NULL, "can't get collective access property")
+
+ /* Allocate the datatype object that is returned to the user */
+ if(NULL == (dtype = H5FL_CALLOC(H5VL_daosm_dtype_t)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "can't allocate DAOS-M datatype struct")
+ dtype->obj.item.type = H5I_DATATYPE;
+ dtype->obj.item.file = item->file;
+ dtype->obj.item.rc = 1;
+ dtype->obj.obj_oh = DAOS_HDL_INVAL;
+ dtype->type_id = FAIL;
+ dtype->tcpl_id = FAIL;
+ dtype->tapl_id = FAIL;
+
+ /* Check if we're actually opening the group or just receiving the datatype
+ * info from the leader */
+ if(!collective || (item->file->my_rank == 0)) {
+ if(collective && (item->file->num_procs > 1))
+ must_bcast = TRUE;
+
+ /* Check for open by address */
+ if(H5VL_OBJECT_BY_ADDR == loc_params.type) {
+ /* Generate oid from address */
+ H5VL_daosm_oid_generate(&dtype->obj.oid, (uint64_t)loc_params.loc_data.loc_by_addr.addr, H5I_DATATYPE);
+ } /* end if */
+ else {
+ /* Open using name parameter */
+ /* Traverse the path */
+ if(NULL == (target_grp = H5VL_daosm_group_traverse(item, name, dxpl_id, req, &target_name, NULL, NULL)))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_BADITER, NULL, "can't traverse path")
+
+ /* Follow link to datatype */
+ if(H5VL_daosm_link_follow(target_grp, target_name, HDstrlen(target_name), dxpl_id, req, &dtype->obj.oid) < 0)
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, NULL, "can't follow link to datatype")
+ } /* end else */
+
+ /* Open datatype */
+ if(0 != (ret = daos_obj_open(item->file->coh, dtype->obj.oid, item->file->epoch, item->file->flags & H5F_ACC_RDWR ? DAOS_COO_RW : DAOS_COO_RO, &dtype->obj.obj_oh, NULL /*event*/)))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTOPENOBJ, NULL, "can't open datatype: %d", ret)
+
+ /* Set up operation to read datatype and TCPL sizes from datatype */
+ /* Set up dkey */
+ daos_iov_set(&dkey, int_md_key, (daos_size_t)(sizeof(int_md_key) - 1));
+
+ /* Set up iod */
+ HDmemset(iod, 0, sizeof(iod));
+ daos_iov_set(&iod[0].iod_name, (void *)type_key, (daos_size_t)(sizeof(type_key) - 1));
+ daos_csum_set(&iod[0].iod_kcsum, NULL, 0);
+ iod[0].iod_nr = 1u;
+ iod[0].iod_size = DAOS_REC_ANY;
+ iod[0].iod_type = DAOS_IOD_SINGLE;
+
+ daos_iov_set(&iod[1].iod_name, (void *)tcpl_key, (daos_size_t)(sizeof(tcpl_key) - 1));
+ daos_csum_set(&iod[1].iod_kcsum, NULL, 0);
+ iod[1].iod_nr = 1u;
+ iod[1].iod_size = DAOS_REC_ANY;
+ iod[1].iod_type = DAOS_IOD_SINGLE;
+
+ /* Read internal metadata sizes from datatype */
+ if(0 != (ret = daos_obj_fetch(dtype->obj.obj_oh, item->file->epoch, &dkey, 2, iod, NULL,
+ NULL /*maps*/, NULL /*event*/)))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTDECODE, NULL, "can't read metadata sizes from datatype: %d", ret)
+
+ /* Check for metadata not found */
+ if((iod[0].iod_size == (uint64_t)0) || (iod[1].iod_size == (uint64_t)0))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_NOTFOUND, NULL, "internal metadata not found")
+
+ /* Compute datatype info buffer size */
+ type_len = iod[0].iod_size;
+ tcpl_len = iod[1].iod_size;
+ tot_len = type_len + tcpl_len;
+
+ /* Allocate datatype info buffer if necessary */
+ if((tot_len + (5 * sizeof(uint64_t))) > sizeof(tinfo_buf_static)) {
+ if(NULL == (tinfo_buf_dyn = (uint8_t *)H5MM_malloc(tot_len + (5 * sizeof(uint64_t)))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "can't allocate datatype info buffer")
+ tinfo_buf = tinfo_buf_dyn;
+ } /* end if */
+
+ /* Set up sgl */
+ p = tinfo_buf + (5 * sizeof(uint64_t));
+ daos_iov_set(&sg_iov[0], p, (daos_size_t)type_len);
+ sgl[0].sg_nr.num = 1;
+ sgl[0].sg_nr.num_out = 0;
+ sgl[0].sg_iovs = &sg_iov[0];
+ p += type_len;
+ daos_iov_set(&sg_iov[1], p, (daos_size_t)tcpl_len);
+ sgl[1].sg_nr.num = 1;
+ sgl[1].sg_nr.num_out = 0;
+ sgl[1].sg_iovs = &sg_iov[1];
+
+ /* Read internal metadata from datatype */
+ if(0 != (ret = daos_obj_fetch(dtype->obj.obj_oh, item->file->epoch, &dkey, 2, iod, sgl, NULL /*maps*/, NULL /*event*/)))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTDECODE, NULL, "can't read metadata from datatype: %d", ret)
+
+ /* Broadcast datatype info if there are other processes that need it */
+ if(collective && (item->file->num_procs > 1)) {
+ HDassert(tinfo_buf);
+ HDassert(sizeof(tinfo_buf_static) >= 5 * sizeof(uint64_t));
+
+ /* Encode oid */
+ p = tinfo_buf;
+ UINT64ENCODE(p, dtype->obj.oid.lo)
+ UINT64ENCODE(p, dtype->obj.oid.mid)
+ UINT64ENCODE(p, dtype->obj.oid.hi)
+
+ /* Encode serialized info lengths */
+ UINT64ENCODE(p, type_len)
+ UINT64ENCODE(p, tcpl_len)
+
+ /* MPI_Bcast dinfo_buf */
+ if(MPI_SUCCESS != MPI_Bcast((char *)tinfo_buf, sizeof(tinfo_buf_static), MPI_BYTE, 0, item->file->comm))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_MPI, NULL, "can't bcast datatype info")
+
+ /* Need a second bcast if it did not fit in the receivers' static
+ * buffer */
+ if(tot_len + (5 * sizeof(uint64_t)) > sizeof(tinfo_buf_static))
+ if(MPI_SUCCESS != MPI_Bcast((char *)p, (int)tot_len, MPI_BYTE, 0, item->file->comm))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_MPI, NULL, "can't bcast datatype info (second bcast)")
+ } /* end if */
+ else
+ p = tinfo_buf + (5 * sizeof(uint64_t));
+ } /* end if */
+ else {
+ /* Receive datatype info */
+ if(MPI_SUCCESS != MPI_Bcast((char *)tinfo_buf, sizeof(tinfo_buf_static), MPI_BYTE, 0, item->file->comm))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_MPI, NULL, "can't bcast datatype info")
+
+ /* Decode oid */
+ p = tinfo_buf_static;
+ UINT64DECODE(p, dtype->obj.oid.lo)
+ UINT64DECODE(p, dtype->obj.oid.mid)
+ UINT64DECODE(p, dtype->obj.oid.hi)
+
+ /* Decode serialized info lengths */
+ UINT64DECODE(p, type_len)
+ UINT64DECODE(p, tcpl_len)
+ tot_len = type_len + tcpl_len;
+
+ /* Check for type_len set to 0 - indicates failure */
+ if(type_len == 0)
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, NULL, "lead process failed to open datatype")
+
+ /* Check if we need to perform another bcast */
+ if(tot_len + (6 * sizeof(uint64_t)) > sizeof(tinfo_buf_static)) {
+ /* Allocate a dynamic buffer if necessary */
+ if(tot_len > sizeof(tinfo_buf_static)) {
+ if(NULL == (tinfo_buf_dyn = (uint8_t *)H5MM_malloc(tot_len)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "can't allocate space for datatype info")
+ tinfo_buf = tinfo_buf_dyn;
+ } /* end if */
+
+ /* Receive datatype info */
+ if(MPI_SUCCESS != MPI_Bcast((char *)tinfo_buf, (int)tot_len, MPI_BYTE, 0, item->file->comm))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_MPI, NULL, "can't bcast datatype info (second bcast)")
+
+ p = tinfo_buf;
+ } /* end if */
+
+ /* Open datatype */
+ if(0 != (ret = daos_obj_open(item->file->coh, dtype->obj.oid, item->file->epoch, item->file->flags & H5F_ACC_RDWR ? DAOS_COO_RW : DAOS_COO_RO, &dtype->obj.obj_oh, NULL /*event*/)))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTOPENOBJ, NULL, "can't open datatype: %d", ret)
+ } /* end else */
+
+ /* Decode datatype and TCPL */
+ if((dtype->type_id = H5Tdecode(p)) < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_CANTDECODE, NULL, "can't deserialize datatype")
+ p += type_len;
+ if((dtype->tcpl_id = H5Pdecode(p)) < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_CANTDECODE, NULL, "can't deserialize datatype creation property list")
+
+ /* Finish setting up datatype struct */
+ if((dtype->tapl_id = H5Pcopy(tapl_id)) < 0)
+ HGOTO_ERROR(H5E_SYM, H5E_CANTCOPY, NULL, "failed to copy tapl");
+
+ /* Set return value */
+ ret_value = (void *)dtype;
+
+done:
+ /* Cleanup on failure */
+ if(NULL == ret_value) {
+ /* Bcast tinfo_buf as '0' if necessary - this will trigger failures in
+ * in other processes so we do not need to do the second bcast. */
+ if(must_bcast) {
+ HDmemset(tinfo_buf_static, 0, sizeof(tinfo_buf_static));
+ if(MPI_SUCCESS != MPI_Bcast(tinfo_buf_static, sizeof(tinfo_buf_static), MPI_BYTE, 0, item->file->comm))
+ HDONE_ERROR(H5E_DATATYPE, H5E_MPI, NULL, "can't bcast empty datatype info")
+ } /* end if */
+
+ /* Close datatype */
+ if(dtype && H5VL_daosm_datatype_close(dtype, dxpl_id, req) < 0)
+ HDONE_ERROR(H5E_DATATYPE, H5E_CLOSEERROR, NULL, "can't close datatype")
+ } /* end if */
+
+ /* Close target group */
+ if(target_grp && H5VL_daosm_group_close(target_grp, dxpl_id, req) < 0)
+ HDONE_ERROR(H5E_DATATYPE, H5E_CLOSEERROR, NULL, "can't close group")
+
+ /* Free memory */
+ tinfo_buf_dyn = (uint8_t *)H5MM_xfree(tinfo_buf_dyn);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_daosm_datatype_open() */
/*-------------------------------------------------------------------------
+ * Function: H5VL_daosm_datatype_get
+ *
+ * Purpose: Gets certain information about a datatype
+ *
+ * Return: Success: 0
+ * Failure: -1
+ *
+ * Programmer: Neil Fortner
+ * May, 2017
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5VL_daosm_datatype_get(void *_dtype, H5VL_datatype_get_t get_type,
+ hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req, va_list arguments)
+{
+ H5VL_daosm_dtype_t *dtype = (H5VL_daosm_dtype_t *)_dtype;
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT
+
+ switch (get_type) {
+ case H5VL_DATATYPE_GET_BINARY:
+ {
+ ssize_t *nalloc = va_arg(arguments, ssize_t *);
+ void *buf = va_arg(arguments, void *);
+ size_t size = va_arg(arguments, size_t);
+
+ if(H5Tencode(dtype->type_id, buf, &size) < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't determine serialized length of datatype")
+
+ *nalloc = (ssize_t)size;
+ break;
+ } /* end block */
+ case H5VL_DATATYPE_GET_TCPL:
+ {
+ hid_t *plist_id = va_arg(arguments, hid_t *);
+
+ /* Retrieve the datatype's creation property list */
+ if((*plist_id = H5Pcopy(dtype->tcpl_id)) < 0)
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "can't get dtype creation property list")
+
+ break;
+ } /* end block */
+ default:
+ HGOTO_ERROR(H5E_VOL, H5E_UNSUPPORTED, FAIL, "can't get this type of information from datatype")
+ } /* end switch */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5VL_daosm_datatype_get() */
+
+
+/*-------------------------------------------------------------------------
* Function: H5VL_daosm_datatype_close
*
* Purpose: Closes a daos-m HDF5 datatype.
@@ -5105,14 +5572,30 @@ H5VL_daosm_datatype_open(void H5_ATTR_UNUSED *_item,
*-------------------------------------------------------------------------
*/
static herr_t
-H5VL_daosm_datatype_close(void H5_ATTR_UNUSED *_dtype,
- hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req)
+H5VL_daosm_datatype_close(void *_dtype, hid_t H5_ATTR_UNUSED dxpl_id,
+ void H5_ATTR_UNUSED **req)
{
+ H5VL_daosm_dtype_t *dtype = (H5VL_daosm_dtype_t *)_dtype;
+ int ret;
herr_t ret_value = SUCCEED;
- FUNC_ENTER_NOAPI_NOINIT_NOERR
+ FUNC_ENTER_NOAPI_NOINIT
- HDassert(0 && "Not implemented (should not be called)");
+ HDassert(dtype);
+
+ if(--dtype->obj.item.rc == 0) {
+ /* Free datatype data structures */
+ if(!daos_handle_is_inval(dtype->obj.obj_oh))
+ if(0 != (ret = daos_obj_close(dtype->obj.obj_oh, NULL /*event*/)))
+ HDONE_ERROR(H5E_DATATYPE, H5E_CANTCLOSEOBJ, FAIL, "can't close datatype DAOS object: %d", ret)
+ if(dtype->type_id != FAIL && H5I_dec_app_ref(dtype->type_id) < 0)
+ HDONE_ERROR(H5E_DATATYPE, H5E_CANTDEC, FAIL, "failed to close datatype")
+ if(dtype->tcpl_id != FAIL && H5I_dec_app_ref(dtype->tcpl_id) < 0)
+ HDONE_ERROR(H5E_DATATYPE, H5E_CANTDEC, FAIL, "failed to close plist")
+ if(dtype->tapl_id != FAIL && H5I_dec_app_ref(dtype->tapl_id) < 0)
+ HDONE_ERROR(H5E_DATATYPE, H5E_CANTDEC, FAIL, "failed to close plist")
+ dtype = H5FL_FREE(H5VL_daosm_dtype_t, dtype);
+ } /* end if */
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_daosm_datatype_close() */
@@ -6971,7 +7454,7 @@ H5VL_daosm_map_open(void *_item, H5VL_loc_params_t loc_params, const char *name,
tot_len = ktype_len + vtype_len;
/* Allocate map info buffer if necessary */
- if(tot_len > sizeof(minfo_buf_static)) {
+ if((tot_len + (5 * sizeof(uint64_t))) > sizeof(minfo_buf_static)) {
if(NULL == (minfo_buf_dyn = (uint8_t *)H5MM_malloc(tot_len + (5 * sizeof(uint64_t)))))
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "can't allocate map info buffer")
minfo_buf = minfo_buf_dyn;
diff --git a/src/H5VLdaosm.h b/src/H5VLdaosm.h
index ab9d754..d2d36f4 100644
--- a/src/H5VLdaosm.h
+++ b/src/H5VLdaosm.h
@@ -97,6 +97,16 @@ typedef struct H5VL_daosm_dset_t {
hid_t dapl_id;
} H5VL_daosm_dset_t;
+/* The datatype struct */
+/* Note we could speed things up a bit by caching the serialized datatype. We
+ * may also not need to keep the type_id around. -NAF */
+typedef struct H5VL_daosm_dtype_t {
+ H5VL_daosm_obj_t obj; /* Must be first */
+ hid_t type_id;
+ hid_t tcpl_id;
+ hid_t tapl_id;
+} H5VL_daosm_dtype_t;
+
/* The map struct */
typedef struct H5VL_daosm_map_t {
H5VL_daosm_obj_t obj; /* Must be first */