First stage of moving H5DOread/write_chunk() to src/ and making

them H5D calls.
* Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*.
* Moved the hl/test/test_dset_opt test to test/ and renamed to
  direct_chunk.
* Moved the hl/test/dectris_hl_perf test to tools/test/perform
  and renamed to direct_write_perf.
* Updated autotools and CMake files.

1 files changed, 2167 insertions, 0 deletions

diff --git a/test/direct_chunk.c b/test/direct_chunk.c
new file mode 100644
index 0000000..2ef38ea
--- /dev/null
+++ b/test/direct_chunk.c
@@ -0,0 +1,2167 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+* Copyright by The HDF Group.                                               *
+* Copyright by the Board of Trustees of the University of Illinois.         *
+* All rights reserved.                                                      *
+*                                                                           *
+* This file is part of HDF5.  The full HDF5 copyright notice, including     *
+* terms governing use, modification, and redistribution, is contained in    *
+ * the COPYING file, which can be found at the root of the source code       *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * If you do not have access to either file, you may request a copy from     *
+ * help@hdfgroup.org.                                                        *
+* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "h5test.h"
+
+#if defined(H5_HAVE_ZLIB_H) && !defined(H5_ZLIB_HEADER) 
+# define H5_ZLIB_HEADER "zlib.h"
+#endif
+#if defined(H5_ZLIB_HEADER)
+# include H5_ZLIB_HEADER /* "zlib.h" */
+#endif
+
+#define FILE_NAME "direct_chunk.h5"
+
+/* Datasets for Direct Write tests */
+#define DATASETNAME1        "direct_write"
+#define DATASETNAME2        "skip_one_filter"
+#define DATASETNAME3        "skip_two_filters"
+#define DATASETNAME4        "data_conv"
+#define DATASETNAME5        "contiguous_dset"
+#define DATASETNAME6        "invalid_argue"
+#define DATASETNAME7        "overwrite_chunk"
+/* Datasets for Direct Read tests */
+#define DATASETNAME8        "disabled_chunk_cache"
+#define DATASETNAME9        "flush_chunk_cache"
+#define DATASETNAME10       "read_w_valid_cache"
+#define DATASETNAME11       "unallocated_chunk"
+#define DATASETNAME12       "unfiltered_data"
+
+#define RANK         2
+#define NX     16
+#define NY     16
+#define CHUNK_NX     4
+#define CHUNK_NY     4
+
+#define DEFLATE_SIZE_ADJUST(s) (HDceil(((double)(s))*H5_DOUBLE(1.001))+H5_DOUBLE(12.0))
+
+/* Temporary filter IDs used for testing */
+#define H5Z_FILTER_BOGUS1	305
+#define H5Z_FILTER_BOGUS2	306
+#define ADD_ON			7
+#define FACTOR			3
+
+/* Constants for the overwrite test */
+#define OVERWRITE_NDIMS         3
+#define OVERWRITE_CHUNK_NX      3
+#define OVERWRITE_CHUNK_2NX     6
+#define OVERWRITE_CHUNK_NY      2
+#define OVERWRITE_VALUE         42
+
+/* Defines used in test_single_chunk_latest() */
+#define FILE            "single_latest.h5"
+#define DATASET         "dataset"
+#define DIM0            4
+#define DIM1            32
+#define CHUNK0          DIM0
+#define CHUNK1          DIM1
+
+/* Local prototypes for filter functions */
+static size_t filter_bogus1(unsigned int flags, size_t cd_nelmts,
+    const unsigned int *cd_values, size_t nbytes, size_t *buf_size, void **buf);
+static size_t filter_bogus2(unsigned int flags, size_t cd_nelmts,
+    const unsigned int *cd_values, size_t nbytes, size_t *buf_size, void **buf);
+
+/* This message derives from H5Z */
+const H5Z_class2_t H5Z_BOGUS1[1] = {{
+    H5Z_CLASS_T_VERS,       /* H5Z_class_t version */
+    H5Z_FILTER_BOGUS1,		/* Filter id number		*/
+    1, 1,               /* Encoding and decoding enabled */
+    "bogus1",			/* Filter name for debugging	*/
+    NULL,                       /* The "can apply" callback     */
+    NULL,                       /* The "set local" callback     */
+    filter_bogus1,		/* The actual filter function	*/
+}};
+
+const H5Z_class2_t H5Z_BOGUS2[1] = {{
+    H5Z_CLASS_T_VERS,       /* H5Z_class_t version */
+    H5Z_FILTER_BOGUS2,		/* Filter id number		*/
+    1, 1,               /* Encoding and decoding enabled */
+    "bogus2",			/* Filter name for debugging	*/
+    NULL,                       /* The "can apply" callback     */
+    NULL,                       /* The "set local" callback     */
+    filter_bogus2,		/* The actual filter function	*/
+}};
+
+/*-------------------------------------------------------------------------
+ * Function:	test_direct_chunk_write
+ *
+ * Purpose:	    Test the basic functionality of H5Dwrite_chunk
+ *
+ * Return:	    Success:	0
+ *		        Failure:	1
+ *
+ * Programmer:  Raymond Lu	
+ *              30 November 2012
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifdef H5_HAVE_FILTER_DEFLATE
+static int
+test_direct_chunk_write (hid_t file)
+{
+    hid_t       dataspace = -1, dataset = -1;
+    hid_t       mem_space = -1;
+    hid_t       cparms = -1, dxpl = -1;
+    hsize_t     dims[2]  = {NX, NY};        
+    hsize_t     maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+    hsize_t     chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
+    herr_t      status;
+    int         ret;
+    int         data[NX][NY];
+    int         i, j, n;
+
+    unsigned    filter_mask = 0;
+    int         direct_buf[CHUNK_NX][CHUNK_NY];
+    int         check_chunk[CHUNK_NX][CHUNK_NY];
+    hsize_t     offset[2] = {0, 0};
+    size_t      buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
+
+    const Bytef *z_src = (const Bytef*)(direct_buf);
+    Bytef	    *z_dst = NULL;		    /*destination buffer		*/
+    uLongf	     z_dst_nbytes = (uLongf)DEFLATE_SIZE_ADJUST(buf_size);
+    uLong	     z_src_nbytes = (uLong)buf_size;
+    int          aggression = 9;        /* Compression aggression setting */
+    void	    *outbuf = NULL;         /* Pointer to new buffer */
+
+    hsize_t start[2];  /* Start of hyperslab */
+    hsize_t stride[2]; /* Stride of hyperslab */
+    hsize_t count[2];  /* Block count */
+    hsize_t block[2];  /* Block sizes */
+
+    TESTING("basic functionality of H5Dwrite_chunk");
+
+    /*
+     * Create the data space with unlimited dimensions.
+     */
+    if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
+        goto error;
+
+    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
+        goto error;
+
+    /*
+     * Modify dataset creation properties, i.e. enable chunking and compression
+     */
+    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+        goto error;
+
+    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
+        goto error;
+
+    if((status = H5Pset_deflate( cparms, (unsigned) aggression)) < 0)
+        goto error;
+
+    /*
+     * Create a new dataset within the file using cparms
+     * creation properties.
+     */
+    if((dataset = H5Dcreate2(file, DATASETNAME1, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
+			cparms, H5P_DEFAULT)) < 0)
+        goto error;
+
+    /* Initialize the dataset */
+    for(i = n = 0; i < NX; i++)
+        for(j = 0; j < NY; j++)
+	    data[i][j] = n++;
+
+    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
+        goto error;
+
+    /*
+     * Write the data for the dataset.  It should stay in the chunk cache.
+     * It will be evicted from the cache by the H5Dwrite_chunk calls. 
+     */
+    if((status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+		      dxpl, data)) < 0)
+        goto error;
+
+    /* Initialize data for one chunk */
+    for(i = n = 0; i < CHUNK_NX; i++)
+        for(j = 0; j < CHUNK_NY; j++)
+	    direct_buf[i][j] = n++;
+
+    /* Allocate output (compressed) buffer */
+    outbuf = HDmalloc(z_dst_nbytes);
+    z_dst = (Bytef *)outbuf;
+
+    /* Perform compression from the source to the destination buffer */
+    ret = compress2(z_dst, &z_dst_nbytes, z_src, z_src_nbytes, aggression);
+
+    /* Check for various zlib errors */
+    if(Z_BUF_ERROR == ret) {
+        HDfprintf(stderr, "overflow");
+        goto error;
+    } else if(Z_MEM_ERROR == ret) {
+        HDfprintf(stderr, "deflate memory error");
+        goto error;
+    } else if(Z_OK != ret) {
+        HDfprintf(stderr, "other deflate error");
+        goto error;
+    }
+
+    /* Write the compressed chunk data repeatedly to cover all the chunks in the 
+     * dataset, using the direct writing function.     */ 
+    for(i=0; i<NX/CHUNK_NX; i++) {
+        for(j=0; j<NY/CHUNK_NY; j++) {
+            status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, z_dst_nbytes, outbuf);
+            offset[1] += CHUNK_NY;
+        }
+        offset[0] += CHUNK_NX;
+        offset[1] = 0;
+    }
+
+    if(outbuf)
+        HDfree(outbuf);
+
+    if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) 
+        goto error;
+
+    if(H5Dclose(dataset) < 0)
+        goto error;
+
+    if((dataset = H5Dopen2(file, DATASETNAME1, H5P_DEFAULT)) < 0)
+        goto error;
+
+    /*
+     * Select hyperslab for one chunk in the file
+     */
+    start[0]  = CHUNK_NX; start[1]  = CHUNK_NY;
+    stride[0] = 1; stride[1] = 1;
+    count[0]  = 1; count[1]  = 1;
+    block[0]  = CHUNK_NX; block[1]  = CHUNK_NY;
+    if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
+        goto error;
+
+    /* Read the chunk back */
+    if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
+        goto error;
+
+    /* Check that the values read are the same as the values written */
+    for(i = 0; i < CHUNK_NX; i++) {
+        for(j = 0; j < CHUNK_NY; j++) {
+            if(direct_buf[i][j] != check_chunk[i][j]) {
+                HDprintf("    1. Read different values than written.");
+                HDprintf("    At index %d,%d\n", i, j);
+                HDprintf("    direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]); 
+                goto error;
+            }
+        }
+    }
+
+    /* Reinitialize different data for one chunk */
+    for(i = 0; i < CHUNK_NX; i++)
+        for(j = 0; j < CHUNK_NY; j++)
+	    direct_buf[i][j] = i + j;
+
+    /* Allocate output (compressed) buffer */
+    outbuf = HDmalloc(z_dst_nbytes);
+    z_dst = (Bytef *)outbuf;
+
+    /* Perform compression from the source to the destination buffer */
+    ret = compress2(z_dst, &z_dst_nbytes, z_src, z_src_nbytes, aggression);
+
+    /* Check for various zlib errors */
+    if(Z_BUF_ERROR == ret) {
+        HDfprintf(stderr, "overflow");
+        goto error;
+    } else if(Z_MEM_ERROR == ret) {
+        HDfprintf(stderr, "deflate memory error");
+        goto error;
+    } else if(Z_OK != ret) {
+        HDfprintf(stderr, "other deflate error");
+        goto error;
+    }
+
+    /* Rewrite the compressed chunk data repeatedly to cover all the chunks in the 
+     * dataset, using the direct writing function.     */ 
+    offset[0] = offset[1] = 0;
+    for(i=0; i<NX/CHUNK_NX; i++) {
+        for(j=0; j<NY/CHUNK_NY; j++) {
+            status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, z_dst_nbytes, outbuf);
+            offset[1] += CHUNK_NY;
+        }
+        offset[0] += CHUNK_NX;
+        offset[1] = 0;
+    }
+
+    if(outbuf)
+        HDfree(outbuf);
+
+    if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) 
+        goto error;
+
+    if(H5Dclose(dataset) < 0)
+        goto error;
+
+    if((dataset = H5Dopen2(file, DATASETNAME1, H5P_DEFAULT)) < 0)
+        goto error;
+
+    /* Read the chunk back */
+    if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
+        goto error;
+
+    /* Check that the values read are the same as the values written */
+    for(i = 0; i < CHUNK_NX; i++) {
+        for(j = 0; j < CHUNK_NY; j++) {
+            if(direct_buf[i][j] != check_chunk[i][j]) {
+                HDprintf("    2. Read different values than written.");
+                HDprintf("    At index %d,%d\n", i, j);
+                HDprintf("    direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]); 
+                goto error;
+            }
+        }
+    }
+
+    /*
+     * Close/release resources.
+     */
+    H5Dclose(dataset);
+    H5Sclose(mem_space);
+    H5Sclose(dataspace);
+    H5Pclose(cparms);
+    H5Pclose(dxpl);
+    
+    PASSED();
+    return 0;
+
+error:
+    H5E_BEGIN_TRY {
+        H5Dclose(dataset);
+        H5Sclose(mem_space);
+        H5Sclose(dataspace);
+        H5Pclose(cparms);
+        H5Pclose(dxpl);
+    } H5E_END_TRY;
+
+    if(outbuf)
+        HDfree(outbuf);
+
+    H5_FAILED();
+    return 1;
+} /* test_direct_chunk_write() */
+#endif /* H5_HAVE_FILTER_DEFLATE */
+
+/*-------------------------------------------------------------------------
+ * Function:    test_direct_chunk_overwrite_data
+ *
+ * Purpose:     Test overwriting a chunk with new data.
+ *
+ * Return:      Success:    0
+ *              Failure:    1
+ *
+ * Programmer:  Dana Robinson
+ *              Spring 2017
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_direct_chunk_overwrite_data(hid_t fid)
+{
+    size_t      buf_size = OVERWRITE_CHUNK_NX * OVERWRITE_CHUNK_NY * sizeof(int16_t);
+    int16_t     data_buf[OVERWRITE_CHUNK_NY][OVERWRITE_CHUNK_NX];
+    int16_t     overwrite_buf[OVERWRITE_CHUNK_NY][OVERWRITE_CHUNK_NX];
+    uint32_t    filter_mask = 0;
+    hid_t       tid = H5T_NATIVE_UINT16;
+    hid_t       dcpl_id = -1;
+    hid_t       sid = -1;
+    hid_t       did = -1;
+    uint16_t    fill_value = 0;
+    hsize_t     dset_dims[] = {1, OVERWRITE_CHUNK_NY, OVERWRITE_CHUNK_2NX};
+    hsize_t     dset_max_dims[] = {H5S_UNLIMITED, OVERWRITE_CHUNK_NY, OVERWRITE_CHUNK_2NX};
+    hsize_t     chunk_dims[] = {1, OVERWRITE_CHUNK_NY, OVERWRITE_CHUNK_NX};
+    hsize_t     offset[] = {0, 0, 0};
+    hsize_t     i, j;
+    int16_t     n;
+    int16_t     read_buf[OVERWRITE_CHUNK_NY][OVERWRITE_CHUNK_2NX];
+
+    TESTING("overwriting existing data with H5Dwrite_chunk");
+
+    /* Create the dataset's data space */
+    if ((sid = H5Screate_simple(OVERWRITE_NDIMS, dset_dims, dset_max_dims)) < 0)
+        FAIL_STACK_ERROR
+
+    /* Set chunk size and filll value */
+    if ((dcpl_id = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+        FAIL_STACK_ERROR
+    if (H5Pset_fill_value(dcpl_id, tid, &fill_value) < 0)
+        FAIL_STACK_ERROR
+    if (H5Pset_chunk(dcpl_id, OVERWRITE_NDIMS, chunk_dims) < 0)
+        FAIL_STACK_ERROR
+
+    /* Create dataset */
+    if ((did = H5Dcreate2(fid, DATASETNAME7, tid, sid, H5P_DEFAULT, dcpl_id, H5P_DEFAULT)) < 0)
+        FAIL_STACK_ERROR
+
+    /* Initialize data buffers */
+    n = 0;
+    for (i = 0; i < OVERWRITE_CHUNK_NY; i++) {
+        for (j = 0; j < OVERWRITE_CHUNK_NX; j++) {
+            data_buf[i][j] = n++;
+            overwrite_buf[i][j] = OVERWRITE_VALUE;
+        }
+    }
+
+    /* Write chunk data using the direct write function. */
+    if (H5Dwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, buf_size, data_buf) < 0)
+        FAIL_STACK_ERROR
+
+    /* Write second chunk. */
+    offset[2] = OVERWRITE_CHUNK_NX;
+    if (H5Dwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, buf_size, data_buf) < 0)
+        FAIL_STACK_ERROR
+
+    /* Overwrite first chunk. */
+    offset[2] = 0;
+    if (H5Dwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, buf_size, overwrite_buf) < 0)
+        FAIL_STACK_ERROR
+
+    /* Read the data back out */
+    if (H5Dread(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, read_buf) < 0)
+        FAIL_STACK_ERROR
+
+    /* Ensure that the data are correct in chunk 1 */
+    for (i = 0; i < OVERWRITE_CHUNK_NY; i++)
+        for (j = 0; j < OVERWRITE_CHUNK_NX; j++) {
+            if (read_buf[i][j] != OVERWRITE_VALUE)
+                TEST_ERROR
+        }
+
+    if (H5Pclose(dcpl_id) < 0)
+        FAIL_STACK_ERROR
+    if (H5Sclose(sid) < 0)
+        FAIL_STACK_ERROR
+    if (H5Dclose(did) < 0)
+        FAIL_STACK_ERROR
+
+    PASSED();
+    return 0;
+
+error:
+    H5E_BEGIN_TRY {
+        H5Pclose(dcpl_id);
+        H5Sclose(sid);
+        H5Dclose(did);
+    } H5E_END_TRY;
+
+    H5_FAILED();
+    return 1;
+} /* end test_direct_chunk_overwrite_data() */
+
+/*-------------------------------------------------------------------------
+ * Function:	test_skip_compress_write1
+ *
+ * Purpose:	Test skipping compression filter when it is the only filter
+ *              for the dataset
+ *
+ * Return:	Success:	0
+ *		    Failure:	1
+ *
+ * Programmer:  Raymond Lu	
+ *              30 November 2012
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_skip_compress_write1(hid_t file)
+{
+    hid_t       dataspace = -1, dataset = -1;
+    hid_t       mem_space = -1;
+    hid_t       cparms = -1, dxpl = -1;
+    hsize_t     dims[2]  = {NX, NY};
+    hsize_t     maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+    hsize_t     chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
+    herr_t      status;
+    int         i, j, n;
+
+    unsigned    filter_mask = 0;
+    int         direct_buf[CHUNK_NX][CHUNK_NY];
+    int         check_chunk[CHUNK_NX][CHUNK_NY];
+    hsize_t     offset[2] = {0, 0};
+    size_t      buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
+    int         aggression = 9;     /* Compression aggression setting */
+
+    unsigned    read_filter_mask = 0; /* filter mask after direct read */
+    int         read_direct_buf[CHUNK_NX][CHUNK_NY];
+    hsize_t     read_buf_size = 0; /* buf size */
+
+    hsize_t start[2];  /* Start of hyperslab */
+    hsize_t stride[2]; /* Stride of hyperslab */
+    hsize_t count[2];  /* Block count */
+    hsize_t block[2];  /* Block sizes */
+
+    TESTING("skipping compression filter for H5Dwrite_chunk/H5Dread_chunk");
+
+    /*
+     * Create the data space with unlimited dimensions.
+     */
+    if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
+        goto error;
+
+    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
+        goto error;
+
+    /*
+     * Modify dataset creation properties, i.e. enable chunking and compression
+     */
+    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+        goto error;
+
+    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
+        goto error;
+
+    if((status = H5Pset_deflate( cparms, (unsigned ) aggression)) < 0)
+        goto error;
+
+    /*
+     * Create a new dataset within the file using cparms
+     * creation properties.
+     */
+    if((dataset = H5Dcreate2(file, DATASETNAME2, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
+			cparms, H5P_DEFAULT)) < 0)
+        goto error;
+
+    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
+        goto error;
+
+    /* Initialize data for one chunk */
+    for(i = n = 0; i < CHUNK_NX; i++)
+        for(j = 0; j < CHUNK_NY; j++) {
+            direct_buf[i][j] = n++;
+    }
+
+    /* write the uncompressed chunk data repeatedly to dataset, using the direct writing function.
+     * Indicate skipping the compression filter.     */
+    offset[0] = CHUNK_NX;
+    offset[1] = CHUNK_NY;
+
+    filter_mask = 0x00000001;
+
+    if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0)
+        goto error;
+
+    if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0)
+        goto error;
+
+    if(H5Dclose(dataset) < 0)
+        goto error;
+
+    if((dataset = H5Dopen2(file, DATASETNAME2, H5P_DEFAULT)) < 0)
+        goto error;
+
+    /*
+     * Select hyperslab for the chunk just written in the file
+     */
+    start[0]  = CHUNK_NX; start[1]  = CHUNK_NY;
+    stride[0] = 1; stride[1] = 1;
+    count[0]  = 1; count[1]  = 1;
+    block[0]  = CHUNK_NX; block[1]  = CHUNK_NY;
+    if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
+        goto error;
+
+    /* Read the chunk back */
+    if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
+        goto error;
+
+    /* Check that the values read are the same as the values written */
+    for(i = 0; i < CHUNK_NX; i++) {
+        for(j = 0; j < CHUNK_NY; j++) {
+            if(direct_buf[i][j] != check_chunk[i][j]) {
+                HDprintf("    1. Read different values than written.");
+                HDprintf("    At index %d,%d\n", i, j);
+                HDprintf("    direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]);
+                goto error;
+            }
+        }
+    }
+
+    /* Query chunk storage size */
+    if((status = H5Dget_chunk_storage_size(dataset, offset, &read_buf_size)) < 0)
+        goto error;
+    if(read_buf_size != buf_size)
+        goto error;
+
+    /* Read the raw chunk back */
+    HDmemset(&read_direct_buf, 0, sizeof(read_direct_buf));
+    if((status = H5Dread_chunk(dataset, H5P_DEFAULT, offset, &read_filter_mask, read_direct_buf)) < 0)
+        goto error;
+    if(read_filter_mask != filter_mask)
+        goto error;
+
+    /* Check that the direct chunk read is the same as the chunk written */
+    for(i = 0; i < CHUNK_NX; i++) {
+        for(j = 0; j < CHUNK_NY; j++) {
+            if(direct_buf[i][j] != read_direct_buf[i][j]) {
+                HDprintf("    1. Read different values than written.");
+                HDprintf("    At index %d,%d\n", i, j);
+                HDprintf("    direct_buf=%d, read_direct_buf=%d\n", direct_buf[i][j], read_direct_buf[i][j]);
+                goto error;
+            }
+        }
+    }
+
+    /*
+     * Close/release resources.
+     */
+    H5Dclose(dataset);
+    H5Sclose(mem_space);
+    H5Sclose(dataspace);
+    H5Pclose(cparms);
+    H5Pclose(dxpl);
+
+    PASSED();
+    return 0;
+
+error:
+    H5E_BEGIN_TRY {
+        H5Dclose(dataset);
+        H5Sclose(mem_space);
+        H5Sclose(dataspace);
+        H5Pclose(cparms);
+        H5Pclose(dxpl);
+    } H5E_END_TRY;
+
+    H5_FAILED();
+    return 1;
+} /* test_skip_compress_write1() */
+
+/*-------------------------------------------------------------------------
+ * Function:	filter_bogus1
+ *
+ * Purpose:	    A bogus filter that adds ADD_ON to the original value
+ *
+ * Return:	    Success:	Data chunk size
+ *
+ * Programmer:  Raymond Lu	
+ *              30 November 2012
+ *
+ *-------------------------------------------------------------------------
+ */
+static size_t
+filter_bogus1(unsigned int flags, size_t H5_ATTR_UNUSED cd_nelmts,
+      const unsigned int H5_ATTR_UNUSED *cd_values, size_t nbytes,
+      size_t *buf_size, void **buf)
+{
+    int *int_ptr=(int *)*buf;          /* Pointer to the data values */
+    ssize_t buf_left=(ssize_t)*buf_size;  /* Amount of data buffer left to process */
+
+    if(flags & H5Z_FLAG_REVERSE) { /* read */
+        /* Substract the "add on" value to all the data values */
+        while(buf_left>0) {
+            *int_ptr++ -= (int)ADD_ON;
+            buf_left -= (ssize_t)sizeof(int);
+        } /* end while */
+    } /* end if */
+    else { /* write */
+        /* Add the "add on" value to all the data values */
+        while(buf_left>0) {
+            *int_ptr++ += (int)ADD_ON;
+            buf_left -= (ssize_t)sizeof(int);
+        } /* end while */
+    } /* end else */
+
+    return nbytes;
+} /* filter_bogus1() */
+
+/*-------------------------------------------------------------------------
+ * Function:	filter_bogus2
+ *
+ * Purpose:	A bogus filter that multiplies the original value by FACTOR.
+ *
+ * Return:	Success:	Data chunk size
+ *
+ * Programmer:  Raymond Lu	
+ *              30 November 2012
+ *-------------------------------------------------------------------------
+ */
+static size_t
+filter_bogus2(unsigned int flags, size_t H5_ATTR_UNUSED cd_nelmts,
+      const unsigned int H5_ATTR_UNUSED *cd_values, size_t nbytes,
+      size_t *buf_size, void **buf)
+{
+    int *int_ptr=(int *)*buf;          /* Pointer to the data values */
+    ssize_t buf_left=(ssize_t)*buf_size;  /* Amount of data buffer left to process */
+
+    if(flags & H5Z_FLAG_REVERSE) { /* read */
+        /* Substract the "add on" value to all the data values */
+        while(buf_left>0) {
+            *int_ptr++ /= (int)FACTOR;
+            buf_left -= (ssize_t)sizeof(int);
+        } /* end while */
+    } /* end if */
+    else { /* write */
+        /* Add the "add on" value to all the data values */
+        while(buf_left>0) {
+            *int_ptr++ *= (int)FACTOR;
+            buf_left -= (ssize_t)sizeof(int);
+        } /* end while */
+    } /* end else */
+
+    return nbytes;
+} /* filter_bogus2() */
+
+/*-------------------------------------------------------------------------
+ * Function:	test_skip_compress_write2
+ *
+ * Purpose:	Test skipping compression filter when there are three filters
+ *              for the dataset
+ *
+ * Return:	Success:	0
+ *		    Failure:	1
+ *
+ * Programmer:  Raymond Lu	
+ *              30 November 2012
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_skip_compress_write2(hid_t file)
+{
+    hid_t       dataspace = -1, dataset = -1;
+    hid_t       mem_space = -1;
+    hid_t       cparms = -1, dxpl = -1;
+    hsize_t     dims[2]  = {NX, NY};
+    hsize_t     maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+    hsize_t     chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
+    herr_t      status;
+    int         i, j, n;
+
+    unsigned    filter_mask = 0;    /* orig filter mask */
+    int         origin_direct_buf[CHUNK_NX][CHUNK_NY];
+    int         direct_buf[CHUNK_NX][CHUNK_NY];
+    int         check_chunk[CHUNK_NX][CHUNK_NY];
+    hsize_t     offset[2] = {0, 0};
+    size_t      buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
+    int         aggression = 9;     /* Compression aggression setting */
+
+    unsigned    read_filter_mask = 0;   /* filter mask after direct read */
+    int         read_direct_buf[CHUNK_NX][CHUNK_NY];
+    hsize_t     read_buf_size = 0;  /* buf size */
+
+    hsize_t start[2];   /* Start of hyperslab */
+    hsize_t stride[2];  /* Stride of hyperslab */
+    hsize_t count[2];   /* Block count */
+    hsize_t block[2];   /* Block sizes */
+
+    TESTING("skipping compression filters but keep two other filters");
+
+    /*
+     * Create the data space with unlimited dimensions.
+     */
+    if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
+        goto error;
+
+    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
+        goto error;
+
+    /*
+     * Modify dataset creation properties, i.e. enable chunking and compression.
+     * The order of filters is bogus 1 + deflate + bogus 2.
+     */
+    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+        goto error;
+
+    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
+        goto error;
+
+    /* Register and enable first bogus filter */
+    if(H5Zregister (H5Z_BOGUS1) < 0)
+        goto error;
+
+    if(H5Pset_filter(cparms, H5Z_FILTER_BOGUS1, 0, (size_t)0, NULL) < 0)
+        goto error;
+
+    /* Enable compression filter */
+    if((status = H5Pset_deflate( cparms, (unsigned) aggression)) < 0)
+        goto error;
+
+    /* Register and enable second bogus filter */
+    if(H5Zregister (H5Z_BOGUS2) < 0)
+        goto error;
+
+    if(H5Pset_filter(cparms, H5Z_FILTER_BOGUS2, 0, (size_t)0, NULL) < 0)
+        goto error;
+
+    /*
+     * Create a new dataset within the file using cparms
+     * creation properties.
+     */
+    if((dataset = H5Dcreate2(file, DATASETNAME3, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
+			cparms, H5P_DEFAULT)) < 0)
+        goto error;
+
+    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
+        goto error;
+
+    /* Initialize data for one chunk. Apply operations of two bogus filters to the chunk */
+    for(i = n = 0; i < CHUNK_NX; i++)
+        for(j = 0; j < CHUNK_NY; j++) {
+            origin_direct_buf[i][j] = n++;
+            direct_buf[i][j] = (origin_direct_buf[i][j] + ADD_ON) * FACTOR;
+        }
+
+    /* write the uncompressed chunk data repeatedly to dataset, using the direct writing function.
+     * Indicate skipping the compression filter but keep the other two bogus filters */
+    offset[0] = CHUNK_NX;
+    offset[1] = CHUNK_NY;
+
+    /* compression filter is the middle one to be skipped */
+    filter_mask = 0x00000002;
+
+    if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0)
+        goto error;
+
+    if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0)
+        goto error;
+
+    if(H5Dclose(dataset) < 0)
+        goto error;
+
+    if((dataset = H5Dopen2(file, DATASETNAME3, H5P_DEFAULT)) < 0)
+        goto error;
+
+    /*
+     * Select hyperslab for one chunk in the file
+     */
+    start[0]  = CHUNK_NX; start[1]  = CHUNK_NY;
+    stride[0] = 1; stride[1] = 1;
+    count[0]  = 1; count[1]  = 1;
+    block[0]  = CHUNK_NX; block[1]  = CHUNK_NY;
+    if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
+        goto error;
+
+    /* Read the chunk back */
+    if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
+        goto error;
+
+    /* Check that the values read are the same as the values written */
+    for(i = 0; i < CHUNK_NX; i++) {
+        for(j = 0; j < CHUNK_NY; j++) {
+            if(origin_direct_buf[i][j] != check_chunk[i][j]) {
+                HDprintf("    1. Read different values than written.");
+                HDprintf("    At index %d,%d\n", i, j);
+                HDprintf("    origin_direct_buf=%d, check_chunk=%d\n", origin_direct_buf[i][j], check_chunk[i][j]);
+                goto error;
+            }
+        }
+    }
+
+    /* Query chunk storage size */
+    if((status = H5Dget_chunk_storage_size(dataset, offset, &read_buf_size)) < 0)
+        goto error;
+    if(read_buf_size != buf_size)
+        goto error;
+
+    /* Read the raw chunk back */
+    HDmemset(&read_direct_buf, 0, sizeof(read_direct_buf));
+    if((status = H5Dread_chunk(dataset, H5P_DEFAULT, offset, &read_filter_mask, read_direct_buf)) < 0)
+        goto error;
+    if(read_filter_mask != filter_mask)
+        goto error;
+
+    /* Check that the direct chunk read is the same as the chunk written */
+    for(i = 0; i < CHUNK_NX; i++) {
+        for(j = 0; j < CHUNK_NY; j++) {
+            if(direct_buf[i][j] != read_direct_buf[i][j]) {
+                HDprintf("    1. Read different values than written.");
+                HDprintf("    At index %d,%d\n", i, j);
+                HDprintf("    direct_buf=%d, read_direct_buf=%d\n", direct_buf[i][j], read_direct_buf[i][j]);
+                goto error;
+            }
+        }
+    }
+
+    /*
+     * Close/release resources.
+     */
+    H5Dclose(dataset);
+    H5Sclose(mem_space);
+    H5Sclose(dataspace);
+    H5Pclose(cparms);
+    H5Pclose(dxpl);
+
+    PASSED();
+    return 0;
+
+error:
+    H5E_BEGIN_TRY {
+        H5Dclose(dataset);
+        H5Sclose(mem_space);
+        H5Sclose(dataspace);
+        H5Pclose(cparms);
+        H5Pclose(dxpl);
+    } H5E_END_TRY;
+
+    H5_FAILED();
+    return 1;
+} /* test_skip_compress_write2() */
+
+/*-------------------------------------------------------------------------
+ * Function:	test_data_conv
+ *
+ * Purpose:	Test data conversion
+ *
+ * Return:	Success:	0
+ *		    Failure:	1
+ *
+ * Programmer:  Raymond Lu	
+ *              30 November 2012
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_data_conv(hid_t file)
+{
+    typedef struct {
+        int a, b, c[4], d, e;
+    } src_type_t;
+    typedef struct {
+        int a,    c[4],    e;
+    } dst_type_t;
+
+    hid_t       dataspace = -1, dataset = -1;
+    hid_t       mem_space = -1;
+    hid_t       cparms = -1, dxpl = -1;
+    hsize_t     dims[2]  = {NX, NY};        
+    hsize_t     maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+    hsize_t     chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
+    herr_t      status;
+    int         i, j, n;
+    const hsize_t	four = 4;
+    hid_t	st=-1, dt=-1;
+    hid_t       array_dt;
+
+    unsigned    filter_mask = 0;
+    src_type_t  direct_buf[CHUNK_NX][CHUNK_NY];
+    dst_type_t  check_chunk[CHUNK_NX][CHUNK_NY];
+    src_type_t  read_chunk[CHUNK_NX][CHUNK_NY];       /* For H5Dread_chunk */
+
+    hsize_t     offset[2] = {0, 0};
+    size_t      buf_size = CHUNK_NX*CHUNK_NY*sizeof(src_type_t);
+
+    hsize_t start[2];  /* Start of hyperslab */
+    hsize_t stride[2]; /* Stride of hyperslab */
+    hsize_t count[2];  /* Block count */
+    hsize_t block[2];  /* Block sizes */
+
+    TESTING("data conversion for H5Dwrite_chunk/H5Dread_chunk");
+
+    /*
+     * Create the data space with unlimited dimensions.
+     */
+    if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
+        goto error;
+
+    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
+        goto error;
+
+    /*
+     * Modify dataset creation properties, i.e. enable chunking
+     */
+    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+        goto error;
+
+    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
+        goto error;
+
+    /* Build hdf5 datatypes */
+    array_dt = H5Tarray_create2(H5T_NATIVE_INT, 1, &four);
+    if((st = H5Tcreate(H5T_COMPOUND, sizeof(src_type_t))) < 0 ||
+            H5Tinsert(st, "a", HOFFSET(src_type_t, a), H5T_NATIVE_INT) < 0 ||
+            H5Tinsert(st, "b", HOFFSET(src_type_t, b), H5T_NATIVE_INT) < 0 ||
+            H5Tinsert(st, "c", HOFFSET(src_type_t, c), array_dt) < 0 ||
+            H5Tinsert(st, "d", HOFFSET(src_type_t, d), H5T_NATIVE_INT) < 0 ||
+            H5Tinsert(st, "e", HOFFSET(src_type_t, e), H5T_NATIVE_INT) < 0)
+        goto error;
+
+    if(H5Tclose(array_dt) < 0)
+        goto error;
+
+    array_dt = H5Tarray_create2(H5T_NATIVE_INT, 1, &four);
+    if((dt = H5Tcreate(H5T_COMPOUND, sizeof(dst_type_t))) < 0 ||
+            H5Tinsert(dt, "a", HOFFSET(dst_type_t, a), H5T_NATIVE_INT) < 0 ||
+            H5Tinsert(dt, "c", HOFFSET(dst_type_t, c), array_dt) < 0 ||
+            H5Tinsert(dt, "e", HOFFSET(dst_type_t, e), H5T_NATIVE_INT) < 0)
+        goto error;
+
+    if(H5Tclose(array_dt) < 0)
+        goto error;
+
+    /*
+     * Create a new dataset within the file using cparms
+     * creation properties.
+     */
+    if((dataset = H5Dcreate2(file, DATASETNAME4, st, dataspace, H5P_DEFAULT,
+			cparms, H5P_DEFAULT)) < 0)
+        goto error;
+
+    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
+        goto error;
+
+    /* Initialize data for one chunk */
+    for(i = n = 0; i < CHUNK_NX; i++) {
+        for(j = 0; j < CHUNK_NY; j++) {
+            (direct_buf[i][j]).a    = i*j+0;
+            (direct_buf[i][j]).b    = i*j+1;
+            (direct_buf[i][j]).c[0] = i*j+2;
+            (direct_buf[i][j]).c[1] = i*j+3;
+            (direct_buf[i][j]).c[2] = i*j+4;
+            (direct_buf[i][j]).c[3] = i*j+5;
+            (direct_buf[i][j]).d    = i*j+6;
+            (direct_buf[i][j]).e    = i*j+7;
+        }
+    }
+
+    /* write the chunk data to dataset, using the direct writing function. 
+     * There should be no data conversion involved. */
+    offset[0] = CHUNK_NX;
+    offset[1] = CHUNK_NY;
+
+    if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0)
+        goto error;
+
+    if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) 
+        goto error;
+
+    if(H5Dclose(dataset) < 0)
+        goto error;
+
+    if((dataset = H5Dopen2(file, DATASETNAME4, H5P_DEFAULT)) < 0)
+        goto error;
+
+    /* Use H5Dread_chunk() to read the uncompressed data */
+    if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, read_chunk)) < 0)
+        goto error;
+
+    /* Check that the values read are the same as the values written */
+    for(i = 0; i < CHUNK_NX; i++) {
+        for(j = 0; j < CHUNK_NY; j++) {
+            if ((direct_buf[i][j]).a    != (read_chunk[i][j]).a    ||
+                (direct_buf[i][j]).b    != (read_chunk[i][j]).b    ||
+                (direct_buf[i][j]).c[0] != (read_chunk[i][j]).c[0] ||
+                (direct_buf[i][j]).c[1] != (read_chunk[i][j]).c[1] ||
+                (direct_buf[i][j]).c[2] != (read_chunk[i][j]).c[2] ||
+                (direct_buf[i][j]).c[3] != (read_chunk[i][j]).c[3] ||
+                (direct_buf[i][j]).d    != (read_chunk[i][j]).d    ||
+                (direct_buf[i][j]).e    != (read_chunk[i][j]).e) {
+                    HDprintf("    1. Read different values than written.");
+                    HDprintf("    At index %d,%d\n", i, j);
+                    HDprintf("    src={a=%d, b=%d, c=[%d,%d,%d,%d], d=%d, e=%d\n",
+                        (direct_buf[i][j]).a, (direct_buf[i][j]).b, (direct_buf[i][j]).c[0], (direct_buf[i][j]).c[1], 
+                        (direct_buf[i][j]).c[2], (direct_buf[i][j]).c[3], (direct_buf[i][j]).d, (direct_buf[i][j]).e);
+                    HDprintf("    dst={a=%d, b=%d, c=[%d,%d,%d,%d], d=%d, e=%d\n",
+                        (read_chunk[i][j]).a, (read_chunk[i][j]).b, (read_chunk[i][j]).c[0], (read_chunk[i][j]).c[1], 
+                        (read_chunk[i][j]).c[2], (read_chunk[i][j]).c[3], (read_chunk[i][j]).d, (read_chunk[i][j]).e);
+
+                    goto error;
+            }
+        }
+    }
+
+    /*
+     * Select hyperslab for the chunk just written in the file
+     */
+    start[0]  = CHUNK_NX; start[1]  = CHUNK_NY;
+    stride[0] = 1; stride[1] = 1;
+    count[0]  = 1; count[1]  = 1;
+    block[0]  = CHUNK_NX; block[1]  = CHUNK_NY;
+    if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
+        goto error;
+
+    /* Read the chunk back. Data should be converted */
+    if((status = H5Dread(dataset, dt, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
+        goto error;
+
+    /* Check that the values read are the same as the values written */
+    for(i = 0; i < CHUNK_NX; i++) {
+        for(j = 0; j < CHUNK_NY; j++) {
+            if ((direct_buf[i][j]).a    != (check_chunk[i][j]).a    ||
+                (direct_buf[i][j]).c[0] != (check_chunk[i][j]).c[0] ||
+                (direct_buf[i][j]).c[1] != (check_chunk[i][j]).c[1] ||
+                (direct_buf[i][j]).c[2] != (check_chunk[i][j]).c[2] ||
+                (direct_buf[i][j]).c[3] != (check_chunk[i][j]).c[3] ||
+                (direct_buf[i][j]).e    != (check_chunk[i][j]).e) {
+                    HDprintf("    1. Read different values than written.");
+                    HDprintf("    At index %d,%d\n", i, j);
+                    HDprintf("    src={a=%d, b=%d, c=[%d,%d,%d,%d], d=%d, e=%d\n",
+                        (direct_buf[i][j]).a, (direct_buf[i][j]).b, (direct_buf[i][j]).c[0], (direct_buf[i][j]).c[1], 
+                        (direct_buf[i][j]).c[2], (direct_buf[i][j]).c[3], (direct_buf[i][j]).d, (direct_buf[i][j]).e);
+                    HDprintf("    dst={a=%d, c=[%d,%d,%d,%d], e=%d\n",
+                        (check_chunk[i][j]).a, (check_chunk[i][j]).c[0], (check_chunk[i][j]).c[1], (check_chunk[i][j]).c[2], 
+                        (check_chunk[i][j]).c[3], (check_chunk[i][j]).e);
+
+                    goto error;
+            }
+        }
+    }
+
+    /*
+     * Close/release resources.
+     */
+    H5Dclose(dataset);
+    H5Sclose(mem_space);
+    H5Sclose(dataspace);
+    H5Pclose(cparms);
+    H5Pclose(dxpl);
+    H5Tclose(st);
+    H5Tclose(dt);
+
+    PASSED();
+    return 0;
+
+error:
+    H5E_BEGIN_TRY {
+        H5Dclose(dataset);
+        H5Sclose(mem_space);
+        H5Sclose(dataspace);
+        H5Pclose(cparms);
+        H5Pclose(dxpl);
+        H5Tclose(st);
+        H5Tclose(dt);
+    } H5E_END_TRY;
+
+    H5_FAILED();
+    return 1;
+} /* test_data_conv() */
+
+/*-------------------------------------------------------------------------
+ * Function:	test_invalid_parameters
+ *
+ * Purpose:     Test invalid parameters for H5Dwrite_chunk and H5Dread_chunk
+ *
+ * Return:      Success:	0
+ *              Failure:	1
+ *
+ * Programmer:  Raymond Lu	
+ *              30 November 2012
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_invalid_parameters(hid_t file)
+{
+    hid_t       dataspace = -1, dataset = -1;
+    hid_t       mem_space = -1;
+    hid_t       cparms = -1, dxpl = -1;
+    hsize_t     dims[2]  = {NX, NY};        
+    hsize_t     chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
+    herr_t      status;
+    int         i, j, n;
+
+    unsigned    filter_mask = 0;
+    int         direct_buf[CHUNK_NX][CHUNK_NY];
+    hsize_t     offset[2] = {0, 0};
+    size_t      buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
+    int         aggression = 9;     /* Compression aggression setting */
+
+    hsize_t     chunk_nbytes;       /* Chunk size */
+
+    TESTING("invalid parameters for H5Dwrite_chunk/H5Dread_chunk");
+
+    /*
+     * Create the data space with unlimited dimensions.
+     */
+    if((dataspace = H5Screate_simple(RANK, dims, NULL)) < 0)
+        goto error;
+
+    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
+        goto error;
+
+    /*
+     * Modify dataset creation properties
+     */
+    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+        goto error;
+
+    /*
+     * Create a new contiguous dataset to verify H5Dwrite_chunk/H5Dread_chunk doesn't work
+     */
+    if((dataset = H5Dcreate2(file, DATASETNAME5, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
+			cparms, H5P_DEFAULT)) < 0)
+        goto error;
+
+    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
+        goto error;
+
+    /* Initialize data for one chunk */
+    for(i = n = 0; i < CHUNK_NX; i++)
+        for(j = 0; j < CHUNK_NY; j++) {
+            direct_buf[i][j] = n++;
+        }
+
+    /* Try to write the chunk data to contiguous dataset.  It should fail */
+    offset[0] = CHUNK_NX;
+    offset[1] = CHUNK_NY;
+
+    H5E_BEGIN_TRY {
+        if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    /* Try to get chunk size for a contiguous dataset.  It should fail */
+    H5E_BEGIN_TRY {
+        if((status = H5Dget_chunk_storage_size(dataset, offset, &chunk_nbytes)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    /* Try to H5Dread_chunk from the contiguous dataset.  It should fail */
+    H5E_BEGIN_TRY {
+        if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    if(H5Dclose(dataset) < 0)
+        goto error;
+
+
+    /* Create a chunked dataset with compression filter */
+    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
+        goto error;
+
+    if((status = H5Pset_deflate( cparms, (unsigned ) aggression)) < 0)
+        goto error;
+
+    /*
+     * Create a new dataset within the file using cparms
+     * creation properties.
+     */
+    if((dataset = H5Dcreate2(file, DATASETNAME6, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
+			cparms, H5P_DEFAULT)) < 0)
+        goto error;
+
+    /* Check invalid dataset ID for H5Dwrite_chunk and H5Dread_chunk */ 
+    H5E_BEGIN_TRY {
+        if((status = H5Dwrite_chunk((hid_t)-1, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    H5E_BEGIN_TRY {
+        if((status = H5Dread_chunk((hid_t)-1, dxpl, offset, &filter_mask, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    /* Check invalid DXPL ID for H5Dwrite_chunk and H5Dread_chunk */
+    H5E_BEGIN_TRY {
+        if((status = H5Dwrite_chunk(dataset, (hid_t)-1, filter_mask, offset, buf_size, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    H5E_BEGIN_TRY {
+        if((status = H5Dread_chunk(dataset, (hid_t)-1, offset, &filter_mask, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    /* Check invalid OFFSET for H5Dwrite_chunk and H5Dread_chunk */
+    H5E_BEGIN_TRY {
+        if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, NULL, buf_size, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    H5E_BEGIN_TRY {
+        if((status = H5Dread_chunk(dataset, dxpl, NULL, &filter_mask, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    /* Check when OFFSET is out of dataset range for H5Dwrite_chunk and H5Dread_chunk */
+    offset[0] = NX + 1;
+    offset[1] = NY;
+    H5E_BEGIN_TRY {
+        if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    H5E_BEGIN_TRY {
+        if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    /* Check when OFFSET is not on chunk boundary for H5Dwrite_chunk and H5Dread_chunk */
+    offset[0] = CHUNK_NX;
+    offset[1] = CHUNK_NY + 1;
+    H5E_BEGIN_TRY {
+        if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    H5E_BEGIN_TRY {
+        if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    /* Check invalid buffer size for H5Dwrite_chunk only */
+    offset[0] = CHUNK_NX;
+    offset[1] = CHUNK_NY;
+    buf_size = 0; 
+    H5E_BEGIN_TRY {
+        if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    /* Check invalid data buffer for H5Dwrite_chunk and H5Dread_chunk */
+    buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
+    H5E_BEGIN_TRY {
+        if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, NULL)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    H5E_BEGIN_TRY {
+        if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, NULL)) != FAIL)
+            goto error;
+    } H5E_END_TRY;
+
+    if(H5Dclose(dataset) < 0)
+        goto error;
+
+    /*
+     * Close/release resources.
+     */
+    H5Sclose(mem_space);
+    H5Sclose(dataspace);
+    H5Pclose(cparms);
+    H5Pclose(dxpl);
+    
+    PASSED();
+    return 0;
+
+error:
+    H5E_BEGIN_TRY {
+        H5Dclose(dataset);
+        H5Sclose(mem_space);
+        H5Sclose(dataspace);
+        H5Pclose(cparms);
+        H5Pclose(dxpl);
+    } H5E_END_TRY;
+
+    H5_FAILED();
+    return 1;
+} /* test_invalid_parameters() */
+
+/*-------------------------------------------------------------------------
+ * Function:    test_direct_chunk_read_no_cache
+ *
+ * Purpose:     Test the basic functionality of H5Dread_chunk with the
+ *              chunk cache diabled.
+ *
+ * Return:      Success:        0
+ *              Failure:        1
+ *
+ * Programmer:  Matthew Strong (GE Healthcare)
+ *              14 February 2016
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifdef H5_HAVE_FILTER_DEFLATE
+static int
+test_direct_chunk_read_no_cache (hid_t file)
+{
+    hid_t       dataspace = -1, dataset = -1;
+    hid_t       mem_space = -1;
+    hid_t       cparms = -1, dxpl = -1, dapl = -1;
+    hsize_t     dims[2]  = {NX, NY};
+    hsize_t     maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+    hsize_t     chunk_dims[2] = {CHUNK_NX, CHUNK_NY};
+    herr_t      status;             /* status from H5 function calls */
+    int         ret;                /* deflate return status */
+    int         data[NX][NY];
+    int         i, j, k, l, n;      /* local index variables */
+
+    unsigned    filter_mask = 0;    /* filter mask returned from H5Dread_chunk */
+    int         direct_buf[CHUNK_NX][CHUNK_NY];  /* chunk read with H5Dread and manually decompressed */
+    int         check_chunk[CHUNK_NX][CHUNK_NY]; /* chunk read with H5Dread */
+    hsize_t     offset[2]; /* chunk offset used for H5Dread_chunk */
+    size_t      buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
+
+    Bytef       *z_src = NULL;      /* source buffer        */
+    uLongf       z_src_nbytes = (uLongf)DEFLATE_SIZE_ADJUST(buf_size);
+    Bytef       *z_dst = (Bytef*)(direct_buf);
+    uLong        z_dst_nbytes = (uLong)buf_size;
+    int          aggression = 9;     /* Compression aggression setting */
+    void        *outbuf = NULL;      /* Pointer to new buffer */
+
+    hsize_t start[2];  /* Start of hyperslab */
+    hsize_t stride[2]; /* Stride of hyperslab */
+    hsize_t count[2];  /* Block count */
+    hsize_t block[2];  /* Block sizes */
+
+    TESTING("basic functionality of H5Dread_chunk (chunk cache disabled)");
+
+    /* Create the data space with unlimited dimensions. */
+    if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
+        goto error;
+    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
+        goto error;
+
+    /* Modify dataset creation properties, i.e. enable chunking and compression */
+    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+        goto error;
+    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
+        goto error;
+    if((status = H5Pset_deflate( cparms, (unsigned) aggression)) < 0)
+        goto error;
+    if((dapl = H5Pcreate(H5P_DATASET_ACCESS)) < 0)
+        goto error;
+
+    /* Disable chunk cache by setting number of slots to 0 */
+    if((status = H5Pset_chunk_cache(dapl, 0, H5D_CHUNK_CACHE_NBYTES_DEFAULT, H5D_CHUNK_CACHE_W0_DEFAULT)) < 0)
+        goto error;
+
+    /* Create a new dataset within the file using cparms creation properties. */
+    if((dataset = H5Dcreate2(file, DATASETNAME8, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
+            cparms, dapl)) < 0)
+        goto error;
+
+    /* Initialize the dataset */
+    for(i = n = 0; i < NX; i++)
+        for(j = 0; j < NY; j++)
+            data[i][j] = n++;
+
+    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
+        goto error;
+
+    /* Write the data for the dataset.
+     * Data will skip chunk cache and go directly to disk. */
+    if((status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+              dxpl, data)) < 0)
+        goto error;
+
+    /* Allocate output (compressed) buffer */
+    outbuf = HDmalloc(z_src_nbytes);
+    z_src = (Bytef *)outbuf;
+
+    /* For each chunk in the dataset, compare the result of H5Dread and H5Dread_chunk. */
+    for(i=0; i<NX/CHUNK_NX; i++) {
+        for(j=0; j<NY/CHUNK_NY; j++) {
+            /* Select hyperslab for one chunk in the file */
+            start[0]  = (hsize_t)i * CHUNK_NX; start[1]  = (hsize_t)j * CHUNK_NY;
+            stride[0] = 1; stride[1] = 1;
+            count[0]  = 1; count[1]  = 1;
+            block[0]  = CHUNK_NX; block[1]  = CHUNK_NY;
+
+            /* Hyperslab selection equals single chunk */
+            if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
+                goto error;
+
+            /* Read the chunk back */
+            if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
+                goto error;
+
+            offset[0] = (hsize_t)i * CHUNK_NX; offset[1] = (hsize_t)j * CHUNK_NY;
+            /* Read the compressed chunk back using the direct read function. */
+            if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, outbuf)) < 0)
+                goto error;
+
+            /* Check filter mask return value */
+            if(filter_mask != 0)
+                goto error;
+
+            /* Perform decompression from the source to the destination buffer */
+            ret = uncompress(z_dst, &z_dst_nbytes, z_src, z_src_nbytes);
+
+            /* Check for various zlib errors */
+            if(Z_BUF_ERROR == ret) {
+                HDfprintf(stderr, "overflow\n");
+                goto error;
+            } else if(Z_MEM_ERROR == ret) {
+                HDfprintf(stderr, "deflate memory error\n");
+                goto error;
+            } else if(Z_DATA_ERROR == ret) {
+                HDfprintf(stderr, "corrupted data\n");
+                goto error;
+            } else if(Z_OK != ret) {
+                HDfprintf(stderr, "other deflate error\n");
+                goto error;
+            }
+
+            /* Check that the decompressed values match those read from H5Dread */
+            for(k = 0; k < CHUNK_NX; k++) {
+                for(l = 0; l < CHUNK_NY; l++) {
+                    if(direct_buf[k][l] != check_chunk[k][l]) {
+                        HDprintf("\n    1. Read different values than written.");
+                        HDprintf("    At index %d,%d\n", k, l);
+                        HDprintf("    direct_buf=%d, check_chunk=%d\n", direct_buf[k][l], check_chunk[k][l]);
+                        goto error;
+                    }
+                }
+            }
+        }
+    }
+
+    /* Close/release resources. */
+    H5Dclose(dataset);
+    H5Sclose(mem_space);
+    H5Sclose(dataspace);
+    H5Pclose(cparms);
+    H5Pclose(dxpl);
+    H5Pclose(dapl);
+
+    if(outbuf)
+        HDfree(outbuf);
+
+    PASSED();
+    return 0;
+
+error:
+    H5E_BEGIN_TRY {
+        H5Dclose(dataset);
+        H5Sclose(mem_space);
+        H5Sclose(dataspace);
+        H5Pclose(cparms);
+        H5Pclose(dxpl);
+        H5Pclose(dapl);
+    } H5E_END_TRY;
+
+    if(outbuf)
+        HDfree(outbuf);
+
+    H5_FAILED();
+    return 1;
+} /* test_direct_chunk_read_no_cache() */
+#endif /* H5_HAVE_FILTER_DEFLATE */
+
+#ifdef H5_HAVE_FILTER_DEFLATE
+static int
+test_direct_chunk_read_cache (hid_t file, hbool_t flush)
+{
+    hid_t       dataspace = -1, dataset = -1;
+    hid_t       mem_space = -1;
+    hid_t       cparms = -1, dxpl = -1;
+    hsize_t     dims[2]  = {NX, NY};
+    hsize_t     maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+    hsize_t     chunk_dims[2] = {CHUNK_NX, CHUNK_NY};
+    herr_t      status;             /* status from H5 function calls */
+    int         ret;                /* deflate return status */
+    int         data[NX][NY];
+    int         i, j, k, l, n;      /* local index variables */
+
+    unsigned    filter_mask = 0;    /* filter mask returned from H5Dread_chunk */
+    int         direct_buf[CHUNK_NX][CHUNK_NY];  /* chunk read with H5Dread and manually decompressed */
+    int         check_chunk[CHUNK_NX][CHUNK_NY]; /* chunk read with H5Dread */
+    hsize_t     offset[2]; /* chunk offset used for H5Dread_chunk */
+    size_t      buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
+
+    Bytef       *z_src = NULL;      /* source buffer        */
+    uLongf       z_src_nbytes = (uLongf)DEFLATE_SIZE_ADJUST(buf_size);
+    Bytef       *z_dst = (Bytef*)(direct_buf);
+    uLong        z_dst_nbytes = (uLong)buf_size;
+    int          aggression = 9;     /* Compression aggression setting */
+    void        *outbuf = NULL;      /* Pointer to new buffer */
+    hsize_t     read_buf_size = 0;
+
+    hsize_t start[2];  /* Start of hyperslab */
+    hsize_t stride[2]; /* Stride of hyperslab */
+    hsize_t count[2];  /* Block count */
+    hsize_t block[2];  /* Block sizes */
+
+    if(flush) {
+        TESTING("basic functionality of H5Dread_chunk (flush chunk cache)");
+    } else {
+        TESTING("basic functionality of H5Dread_chunk (does not flush chunk cache)");
+    }
+
+    /* Create the data space with unlimited dimensions. */
+    if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
+        goto error;
+    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
+        goto error;
+
+    /* Modify dataset creation properties, i.e. enable chunking and compression */
+    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+        goto error;
+    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
+        goto error;
+    if((status = H5Pset_deflate( cparms, (unsigned) aggression)) < 0)
+        goto error;
+
+    /* Create a new dataset within the file using cparms creation properties. */
+    if((dataset = H5Dcreate2(file, flush?DATASETNAME9:DATASETNAME10, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
+            cparms, H5P_DEFAULT)) < 0)
+        goto error;
+
+    /* Initialize the dataset */
+    for(i = n = 0; i < NX; i++)
+        for(j = 0; j < NY; j++)
+            data[i][j] = n++;
+
+    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
+        goto error;
+
+    /* Write the data for the dataset.
+     * It should stay in the chunk cache. */
+    if((status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+              dxpl, data)) < 0)
+        goto error;
+
+    if(flush) {
+        /* Flush the chunk cache to disk. Cache entry is not evicted. */
+        if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0)
+            goto error;
+    }
+
+    /* Allocate output (compressed) buffer */
+    outbuf = HDmalloc(z_src_nbytes);
+    z_src = (Bytef *)outbuf;
+
+    /* For each chunk in the dataset, compare the result of H5Dread and H5Dread_chunk. */
+    for(i=0; i<NX/CHUNK_NX; i++) {
+        for(j=0; j<NY/CHUNK_NY; j++) {
+            /* Select hyperslab for one chunk in the file */
+            start[0]  = (hsize_t)i * CHUNK_NX; start[1]  = (hsize_t)j * CHUNK_NY;
+            stride[0] = 1; stride[1] = 1;
+            count[0]  = 1; count[1]  = 1;
+            block[0]  = CHUNK_NX; block[1]  = CHUNK_NY;
+
+            /* Hyperslab selection equals single chunk */
+            if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
+                goto error;
+
+            /* Read the chunk back */
+            if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
+                goto error;
+
+            offset[0] = (hsize_t)i * CHUNK_NX; offset[1] = (hsize_t)j * CHUNK_NY;
+
+            /* Query chunk storage size */
+            if((status = H5Dget_chunk_storage_size(dataset, offset, &read_buf_size)) < 0)
+                goto error;
+            if(read_buf_size == 0)
+                goto error;
+        
+            /* Read the compressed chunk back using the direct read function. */
+            if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, outbuf)) < 0)
+                goto error;
+
+            /* Check filter mask return value */
+            if(filter_mask != 0)
+                goto error;
+
+            /* Perform decompression from the source to the destination buffer */
+            ret = uncompress(z_dst, &z_dst_nbytes, z_src, z_src_nbytes);
+
+            /* Check for various zlib errors */
+            if(Z_BUF_ERROR == ret) {
+                HDfprintf(stderr, "overflow\n");
+                goto error;
+            } else if(Z_MEM_ERROR == ret) {
+                HDfprintf(stderr, "deflate memory error\n");
+                goto error;
+            } else if(Z_DATA_ERROR == ret) {
+                HDfprintf(stderr, "corrupted data\n");
+                goto error;
+            } else if(Z_OK != ret) {
+                HDfprintf(stderr, "other deflate error\n");
+                goto error;
+            }
+
+            /* Check that the decompressed values match those read from H5Dread */
+            for(k = 0; k < CHUNK_NX; k++) {
+                for(l = 0; l < CHUNK_NY; l++) {
+                    if(direct_buf[k][l] != check_chunk[k][l]) {
+                        HDprintf("\n    1. Read different values than written.");
+                        HDprintf("    At index %d,%d\n", k, l);
+                        HDprintf("    direct_buf=%d, check_chunk=%d\n", direct_buf[k][l], check_chunk[k][l]);
+                        goto error;
+                    }
+                }
+            }
+        }
+    }
+
+    /* Close/release resources. */
+    H5Dclose(dataset);
+    H5Sclose(mem_space);
+    H5Sclose(dataspace);
+    H5Pclose(cparms);
+    H5Pclose(dxpl);
+
+    if(outbuf)
+        HDfree(outbuf);
+
+    PASSED();
+    return 0;
+
+error:
+    H5E_BEGIN_TRY {
+        H5Dclose(dataset);
+        H5Sclose(mem_space);
+        H5Sclose(dataspace);
+        H5Pclose(cparms);
+        H5Pclose(dxpl);
+    } H5E_END_TRY;
+
+    if(outbuf)
+        HDfree(outbuf);
+
+    H5_FAILED();
+    return 1;
+} /* test_direct_chunk_read_cache() */
+#endif /* H5_HAVE_FILTER_DEFLATE */
+
+/*-------------------------------------------------------------------------
+ * Function:    test_read_unfiltered_dset
+ *
+ * Purpose:     Test the basic functionality of H5Dread_chunk on a dataset
+ *              without no filters applied.
+ *
+ * Return:      Success:        0
+ *              Failure:        1
+ *
+ * Programmer:  Matthew Strong (GE Healthcare)
+ *              30 November 2016
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_read_unfiltered_dset(hid_t file)
+{
+    hid_t       dataspace = -1, dataset = -1;
+    hid_t       mem_space = -1;
+    hid_t       cparms = -1, dxpl = -1;
+    hsize_t     dims[2]  = {NX, NY};
+    hsize_t     maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+    hsize_t     chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
+    herr_t      status;
+    int         data[NX][NY];
+    int         i, j, k, l, n;
+
+    unsigned    filter_mask = 0;
+    int         direct_buf[CHUNK_NX][CHUNK_NY];
+    int         check_chunk[CHUNK_NX][CHUNK_NY]; /* chunk read with H5Dread */
+    hsize_t     offset[2] = {0, 0};
+    size_t      buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
+    hsize_t     read_buf_size = 0;
+
+    hsize_t start[2];  /* Start of hyperslab */
+    hsize_t stride[2]; /* Stride of hyperslab */
+    hsize_t count[2];  /* Block count */
+    hsize_t block[2];  /* Block sizes */
+
+    TESTING("basic functionality of H5Dread_chunk on unfiltered datasets");
+
+    /* Create the data space with unlimited dimensions. */
+    if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
+        goto error;
+    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
+        goto error;
+
+    /* Modify dataset creation properties, i.e. enable chunking, no compression */
+    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+        goto error;
+    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
+        goto error;
+
+    /* Create a new dataset within the file using cparms creation properties. */
+    if((dataset = H5Dcreate2(file, DATASETNAME12, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
+            cparms, H5P_DEFAULT)) < 0)
+        goto error;
+
+    /* Initialize the dataset */
+    for(i = n = 0; i < NX; i++)
+        for(j = 0; j < NY; j++)
+            data[i][j] = n++;
+
+    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
+        goto error;
+
+    /* Write the data for the dataset.
+     * It should stay in the chunk cache and will be evicted/flushed by
+     * the H5Dread_chunk function call. */
+    if((status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+              dxpl, data)) < 0)
+        goto error;
+
+    if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0)
+        goto error;
+
+    /* For each chunk in the dataset, compare the result of H5Dread and H5Dread_chunk. */
+    for(i=0; i<NX/CHUNK_NX; i++) {
+        for(j=0; j<NY/CHUNK_NY; j++) {
+            /* Select hyperslab for one chunk in the file */
+            start[0]  = (hsize_t)i * CHUNK_NX; start[1]  = (hsize_t)j * CHUNK_NY;
+            stride[0] = 1; stride[1] = 1;
+            count[0]  = 1; count[1]  = 1;
+            block[0]  = CHUNK_NX; block[1]  = CHUNK_NY;
+
+            /* Hyperslab selection equals single chunk */
+            if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
+                goto error;
+
+            /* Read the chunk back */
+            if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
+                goto error;
+
+            /* Query chunk storage size */
+            if((status = H5Dget_chunk_storage_size(dataset, offset, &read_buf_size)) < 0)
+                goto error;
+
+            if(read_buf_size != buf_size )
+                goto error;
+
+            offset[0] = (hsize_t)i * CHUNK_NX; offset[1] = (hsize_t)j * CHUNK_NY;
+            /* Read the raw chunk back */
+            HDmemset(&direct_buf, 0, sizeof(direct_buf));
+            filter_mask = UINT_MAX;
+            if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) < 0)
+                goto error;
+
+            /* Check filter mask return value */
+            if(filter_mask != 0)
+                goto error;
+
+            /* Check that the decompressed values match those read from H5Dread */
+            for(k = 0; k < CHUNK_NX; k++) {
+                for(l = 0; l < CHUNK_NY; l++) {
+                    if(direct_buf[k][l] != check_chunk[k][l]) {
+                        HDprintf("\n    1. Read different values than written.");
+                        HDprintf("    At index %d,%d\n", k, l);
+                        HDprintf("    direct_buf=%d, check_chunk=%d\n", direct_buf[k][l], check_chunk[k][l]);
+                        goto error;
+                    }
+                }
+            }
+        }
+    }
+
+    /* Close/release resources. */
+    H5Dclose(dataset);
+    H5Sclose(mem_space);
+    H5Sclose(dataspace);
+    H5Pclose(cparms);
+    H5Pclose(dxpl);
+
+    PASSED();
+    return 0;
+
+error:
+    H5E_BEGIN_TRY {
+        H5Dclose(dataset);
+        H5Sclose(mem_space);
+        H5Sclose(dataspace);
+        H5Pclose(cparms);
+        H5Pclose(dxpl);
+    } H5E_END_TRY;
+
+    H5_FAILED();
+    return 1;
+} /* test_read_unfiltered_dset() */
+
+/*-------------------------------------------------------------------------
+ * Function:    test_read_unallocated_chunk
+ *
+ * Purpose:     Tests the H5Dread_chunk and H5Dget_chunk_storage_size with valid
+ *              offets to chunks that have not been written to the dataset and are
+ *              not allocated in the chunk storage on disk.
+ *
+ * Return:      Success:        0
+ *              Failure:        1
+ *
+ * Programmer:  Matthew Strong (GE Healthcare)
+ *              30 November 2016
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_read_unallocated_chunk (hid_t file)
+{
+    hid_t       dataspace = -1, dataset = -1;
+    hid_t       mem_space = -1;
+    hid_t       cparms = -1, dxpl = -1;
+    hsize_t     dims[2]  = {NX, NY};
+    hsize_t     maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+    hsize_t     chunk_dims[2] = {CHUNK_NX, CHUNK_NY};
+    hsize_t     chunk_nbytes = CHUNK_NX*CHUNK_NY*sizeof(int);
+    hsize_t     direct_chunk_nbytes = 0;        /* size (bytes) of the on-disk chunk */
+    herr_t      status;     /* status from H5 function calls */
+    hsize_t     i, j;       /* local index variables */
+
+    unsigned    filter_mask = 0;    /* filter mask returned from H5Dread_chunk */
+    int         direct_buf[CHUNK_NX][CHUNK_NY]; /* chunk read with H5Dread and manually decompressed */
+    hsize_t     offset[2];  /* chunk offset used for H5Dread_chunk */
+
+    TESTING("H5Dread_chunk with unallocated chunks");
+
+    /* Create the data space with unlimited dimensions. */
+    if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
+        goto error;
+    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
+        goto error;
+
+    /* Modify dataset creation properties, i.e. enable chunking, no compression */
+    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+        goto error;
+    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
+        goto error;
+
+    /* Create a new dataset within the file using cparms creation properties. */
+    if((dataset = H5Dcreate2(file, DATASETNAME11, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
+            cparms, H5P_DEFAULT)) < 0)
+        goto error;
+
+    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
+        goto error;
+
+    /* Write a single chunk to intialize the chunk storage */
+    HDmemset(&chunk_dims, 0, sizeof(chunk_dims));
+    offset[0] = 0; offset[1] = 0;
+
+    if(H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, chunk_nbytes, &chunk_dims) < 0)
+        goto error;
+
+    /* Attempt to read each chunk in the dataset. Chunks are not allocated,
+     * therefore we expect the result of H5Dread_chunk to fail. Chunk idx starts
+     * at 1, since one chunk was written to init the chunk storage. */
+    for(i=1; i<NX/CHUNK_NX; i++) {
+        for(j=0; j<NY/CHUNK_NY; j++) {
+
+            offset[0] = i * CHUNK_NX;
+            offset[1] = j * CHUNK_NY;
+
+            /* Read a non-existant chunk using the direct read function. */
+            H5E_BEGIN_TRY {
+                status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, &direct_buf);
+            } H5E_END_TRY;
+
+            /* Check that the chunk read call does not succeed. */
+            if(status != -1)
+                goto error;
+
+            /* Query the size of the non-existant chunk */
+            direct_chunk_nbytes = ULONG_MAX;
+            H5E_BEGIN_TRY {
+                status = H5Dget_chunk_storage_size(dataset, offset, &direct_chunk_nbytes);
+            } H5E_END_TRY;
+
+            /* Check that the chunk storage size call does not succeed. */
+            if(status != -1 )
+                goto error;
+            if(direct_chunk_nbytes != 0 )
+                goto error;
+
+        }
+    }
+
+    /* Close/release resources. */
+    H5Dclose(dataset);
+    H5Sclose(mem_space);
+    H5Sclose(dataspace);
+    H5Pclose(cparms);
+    H5Pclose(dxpl);
+
+    PASSED();
+    return 0;
+
+error:
+    H5E_BEGIN_TRY {
+        H5Dclose(dataset);
+        H5Sclose(mem_space);
+        H5Sclose(dataspace);
+        H5Pclose(cparms);
+        H5Pclose(dxpl);
+    } H5E_END_TRY;
+
+    H5_FAILED();
+    return 1;
+} /* test_read_unallocated_chunk() */
+
+/*-------------------------------------------------------------------------
+ * Function:    test_single_chunk_latest
+ *
+ * Purpose:     This is to verify the fix for jira issue HDFFV-10425.
+ *              The problem was due to a bug in the internal ilbrary routine
+ *              H5D__chunk_direct_write() which passed a null dataset
+ *              pointer to the insert callback for the chunk index type.
+ *              Currently, the single chunk index is the only one that
+ *              used the dataset pointer in the insert callback.
+ *
+ *              This routine is based on the test program attached to
+ *              this jira issue:
+ *                  Create a file with the latest format and a chunked dataset
+ *                  with one single chunk.  The library will use single chunk
+ *                  index for the dataset.  
+ *                  Verify that the data read is the same as the written data.
+ *
+ * Return:      Success:        0
+ *              Failure:        1
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_single_chunk_latest(void)
+{
+    hid_t fid;              /* File ID */
+    hid_t fapl;             /* File access property list ID */
+    hid_t sid;              /* Dataspace ID */
+    hid_t did;              /* Dataset ID */
+    hid_t dcpl;             /* Dataset creation property list */
+    hsize_t dims[2] = {DIM0, DIM1};         /* Dimension sizes */
+    hsize_t chunk[2] = {CHUNK0, CHUNK1};    /* Chunk dimension sizes */
+    hsize_t offset[2] = {0,0};              /* Offset for writing */
+    int wdata[DIM0][DIM1];  /* Write buffer */
+    int rdata[DIM0][DIM1];  /* Read buffer */
+    int i, j;               /* Local index variable */
+
+    TESTING("H5Dwrite_chunk with single chunk and latest format");
+
+    /* Initialize data */
+    for (i=0; i<DIM0; i++) {
+      for (j=0; j< DIM1; j++)
+        wdata[i][j] = j/CHUNK0;
+    }
+
+    /* Create a new file with the latest format  */
+    if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+        goto error;
+    if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
+        goto error;
+    if((fid = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+        goto error;
+
+    /* Create dataspace */
+    if((sid = H5Screate_simple(2, dims, NULL)) < 0)
+        goto error;
+
+    /* Create the dataset creation property list and set the chunk size */
+    if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+        goto error;
+    if(H5Pset_chunk(dcpl, 2, chunk) < 0)
+        goto error;
+
+    /* Create the dataset */
+    if((did = H5Dcreate2(fid, DATASET, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+        goto error;
+
+    /* Write the data directly to the dataset */
+    if(H5Dwrite_chunk(did, H5P_DEFAULT, 0, offset, CHUNK0*CHUNK1*4, (void *)wdata) < 0)
+        goto error;
+
+    /*
+     * Close and release resources.
+     */
+    if(H5Pclose(dcpl) < 0)
+        goto error;
+    if(H5Dclose(did) < 0)
+        goto error;
+    if(H5Sclose(sid) < 0)
+        goto error;
+    if(H5Pclose(fapl) < 0)
+        goto error;
+    if(H5Fclose(fid) < 0)
+        goto error;
+
+    /* Open the file and dataset with default properties  */
+    if((fid = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0)
+        goto error;
+    if((did = H5Dopen2(fid, DATASET, H5P_DEFAULT)) < 0)
+        goto error;
+
+    /* Retrieve dataset creation property list */
+    if((dcpl = H5Dget_create_plist(did)) < 0)
+        goto error;
+
+    /* Read the data */
+    if(H5Dread(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata) < 0)
+        goto error;
+
+    /* Verify that the data read was correct.  */
+    for (i = 0; i < DIM0; i++) {
+        for (j = 0; j < DIM1; j++) {
+            if(rdata[i][j] != wdata[i][j])
+                goto error;
+        }
+    }
+
+    /*
+     * Close and release resources
+     */
+    if(H5Pclose(dcpl) < 0)
+        goto error;
+    if(H5Dclose(did) < 0)
+        goto error;
+    if(H5Fclose(fid) < 0)
+        goto error;
+
+    PASSED();
+    return 0;
+
+error:
+    H5E_BEGIN_TRY {
+        H5Dclose(did);
+        H5Sclose(sid);
+        H5Pclose(dcpl);
+        H5Pclose(fapl);
+        H5Fclose(fid);
+    } H5E_END_TRY;
+
+    H5_FAILED();
+    return 1;
+} /* test_single_chunk_latest() */
+
+/*-------------------------------------------------------------------------
+ * Function:	Main function
+ *
+ * Purpose:	    Test direct chunk write function H5Dwrite_chunk and
+ *              chunk direct read function H5Dread_chunk
+ *
+ * Return:	    Success:	0
+ *		        Failure:	1
+ *
+ * Programmer:  Raymond Lu	
+ *              30 November 2012
+ *
+ *-------------------------------------------------------------------------
+ */
+int main( void )
+{
+    hid_t file_id;
+    int   nerrors=0;
+
+    /*
+     * Create a new file. If file exists its contents will be overwritten.
+     */
+    if((file_id = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+        goto error;
+
+    /* Test direct chunk write and direct chunk read */
+#ifdef H5_HAVE_FILTER_DEFLATE
+    nerrors += test_direct_chunk_write(file_id);
+#endif /* H5_HAVE_FILTER_DEFLATE */
+	nerrors += test_direct_chunk_overwrite_data(file_id);
+    nerrors += test_skip_compress_write1(file_id);
+    nerrors += test_skip_compress_write2(file_id);
+    nerrors += test_data_conv(file_id);
+    nerrors += test_invalid_parameters(file_id);
+
+    /* Test direct chunk read */
+#ifdef H5_HAVE_FILTER_DEFLATE
+    nerrors += test_direct_chunk_read_no_cache(file_id);
+    nerrors += test_direct_chunk_read_cache(file_id, TRUE);
+    nerrors += test_direct_chunk_read_cache(file_id, FALSE);
+#endif /* H5_HAVE_FILTER_DEFLATE */
+    nerrors += test_read_unfiltered_dset(file_id);
+    nerrors += test_read_unallocated_chunk(file_id);
+
+    nerrors += test_single_chunk_latest();
+
+    if(H5Fclose(file_id) < 0)
+        goto error;
+
+    /* check for errors */
+    if (nerrors)
+        goto error;
+
+    HDputs("All direct chunk read/write tests passed.");
+    return EXIT_SUCCESS;
+
+error:
+    HDputs("*** TESTS FAILED ***");
+    return EXIT_FAILURE;
+}